BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00024789
         (641 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP57480.1| Retrovirus-related Pol polyprotein from transposo...   226   1e-71
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   225   2e-67
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   224   4e-64
gb|PNX91151.1| copia-type polyprotein, partial [Trifolium pratense]   213   7e-64
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   219   7e-64
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   224   7e-64
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   224   7e-64
dbj|GAU31045.1| hypothetical protein TSUD_214810 [Trifolium subt...   216   2e-63
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            221   8e-63
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   220   1e-62
dbj|GAU27929.1| hypothetical protein TSUD_160240 [Trifolium subt...   204   1e-62
gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]   205   2e-62
emb|CAN76379.1| hypothetical protein VITISV_017862 [Vitis vinifera]   214   2e-62
gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]   219   2e-62
gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposo...   215   2e-62
gb|PNY07765.1| putative copia-type polyprotein [Trifolium pratense]   218   5e-62
gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]            218   7e-62
gb|KYP57183.1| Retrovirus-related Pol polyprotein from transposo...   214   4e-61
gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]   214   4e-61
gb|PNX95763.1| retrotransposon-related protein, partial [Trifoli...   215   9e-61

>gb|KYP57480.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 216

 Score =  226 bits (576), Expect = 1e-71
 Identities = 110/169 (65%), Positives = 129/169 (76%)
 Frame = -2

Query: 637 DMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRHK 458
           +MV GLP++  ST +C DCV GK HREP PKKS WRAS  LQLIH DICGPI P SN  K
Sbjct: 14  NMVHGLPELPASTIMCSDCVNGKQHREPMPKKSKWRASQKLQLIHADICGPITPASNNQK 73

Query: 457 RYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHEF 278
           RYFL F+DDYS  +WV FL EKS AL  FK FK  VEKESG  +K  RTDRGGE TS EF
Sbjct: 74  RYFLCFIDDYSRKSWVYFLLEKSEALYHFKCFKTLVEKESGLPVKVFRTDRGGEFTSSEF 133

Query: 277 DKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           ++FC  +GIKR+LTT YTPQ NGVAERK+R+IM++V+S+LS K +PK +
Sbjct: 134 NEFCELNGIKRKLTTAYTPQQNGVAERKNRTIMNLVRSMLSEKNIPKTF 182


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  225 bits (574), Expect = 2e-67
 Identities = 111/171 (64%), Positives = 132/171 (77%), Gaps = 1/171 (0%)
 Frame = -2

Query: 640 KDMVRGLPKIEKST-KVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNR 464
           K MVRGLP    +T KVCEDC+ GK HR+P PKKS WRA   L+LIH DICGPI P SN 
Sbjct: 143 KGMVRGLPSSLSTTEKVCEDCMKGKQHRDPIPKKSQWRAKQKLELIHADICGPIIPSSNS 202

Query: 463 HKRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSH 284
            KRYFL F+DDY+  AW+ FLTEKS A   F+ FK  VEKESG  IK LRTDRGGE TS 
Sbjct: 203 QKRYFLCFIDDYTRKAWIYFLTEKSEAFHYFQCFKNLVEKESGLMIKCLRTDRGGEFTSS 262

Query: 283 EFDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           EF++FC  +GIKRQLTT YTPQ NGVAERK+R+IM++V+++LS KK+PK++
Sbjct: 263 EFNEFCQKTGIKRQLTTAYTPQQNGVAERKNRTIMNLVRTLLSEKKLPKSF 313



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 29/44 (65%), Positives = 38/44 (86%)
 Frame = -1

Query: 134 LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           +HV DA R KL+NKS KCVLLG++EESK Y+LY+PI +KI++SR
Sbjct: 361 VHVPDAGRTKLENKSCKCVLLGMSEESKGYRLYNPITRKIVISR 404


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  224 bits (570), Expect = 4e-64
 Identities = 108/168 (64%), Positives = 128/168 (76%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           + MV+GLP  + S+K+C+DC++GK HRE  PKKS WRASH LQLIH DICGPIKP SN  
Sbjct: 170 RKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSR 229

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRY ++F+DDYS   WV FL EKS A   FK FK  VEKE+G  I+ LRTDRGGE TS E
Sbjct: 230 KRYLISFIDDYSRKTWVYFLYEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQE 289

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPK 137
           F+ FC   GI RQLT  YTPQ NGVAERK+R+IM+MV+S+LS K+VPK
Sbjct: 290 FNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPK 337



 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 30/44 (68%), Positives = 42/44 (95%)
 Frame = -1

Query: 134 LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           +H+ +AKRKKLD+KS KCVLLG+++ESKAY+LYDPI+++I+VSR
Sbjct: 387 VHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPISERIVVSR 430


>gb|PNX91151.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 430

 Score =  213 bits (542), Expect = 7e-64
 Identities = 99/170 (58%), Positives = 125/170 (73%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           K+MV+GLP +++  +VC DC+ GK HRE  PKK  WR +  L+L+H DICGPI P SN  
Sbjct: 52  KEMVKGLPNLKEDNEVCSDCMTGKQHREVIPKKVNWRXTKXLELVHSDICGPINPASNGG 111

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
            +YF+TF DD++   WV+ L  K+SA E FK+FKA  EKES   I TLRTDRGGE  S  
Sbjct: 112 NKYFVTFTDDFTRKTWVDILQSKASAFESFKRFKAVAEKESNCQILTLRTDRGGEFLSEA 171

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F++FC D GIKRQLTT YTPQ NGV+ERK+R+IM+MV+ +LS KKVPK +
Sbjct: 172 FNRFCTDQGIKRQLTTAYTPQQNGVSERKNRTIMNMVRCMLSDKKVPKKF 221



 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 30/44 (68%), Positives = 41/44 (93%)
 Frame = -1

Query: 134 LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           +HV DA+RKKLD+KS+KCV LG++EESKAYKLY+P +++I+VSR
Sbjct: 269 VHVPDAQRKKLDDKSIKCVHLGVSEESKAYKLYNPADRRIIVSR 312


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  219 bits (559), Expect = 7e-64
 Identities = 106/182 (58%), Positives = 134/182 (73%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           + MV+GLP+I+ S +VC DC++GK  R+  PK S WRAS  LQL+H DICGPI P SN  
Sbjct: 462 RKMVKGLPQIKASARVCHDCLVGKQSRDSIPKSSQWRASQRLQLVHADICGPITPTSNSD 521

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRY L+F+DD+S   WV FLTEKS A   FK++K+ VEKE G  I  LRTDRGGE TS+E
Sbjct: 522 KRYVLSFIDDFSRKMWVYFLTEKSQAFTMFKRYKSLVEKEIGFPICCLRTDRGGEFTSNE 581

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNYMSLMQRERNW 101
           F++FC  +GIKRQLT  YTPQ NGVAER++R++M++V+SILS KK+PK   S      NW
Sbjct: 582 FNEFCQSNGIKRQLTAAYTPQQNGVAERRNRTVMNLVRSILSEKKIPK---SFWPEAVNW 638

Query: 100 IT 95
           +T
Sbjct: 639 VT 640



 Score = 56.6 bits (135), Expect = 9e-06
 Identities = 24/41 (58%), Positives = 34/41 (82%)
 Frame = -1

Query: 134 LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKIL 12
           +H+ DAKR KLD+KS KCVLLG++EE+K Y+LY+P  + +L
Sbjct: 679 VHIPDAKRTKLDDKSCKCVLLGVSEETKGYRLYNPQQRGLL 719


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  224 bits (570), Expect = 7e-64
 Identities = 107/168 (63%), Positives = 128/168 (76%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           ++MV+GLP  +  +K+C+DC++GK HRE  PKKS WRASH LQLIH DICGPIKP SN  
Sbjct: 449 RNMVKGLPDFKMPSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNNR 508

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRY ++F+DDYS   WV FL EKS A   FK FK  VEKE+G  I+ LRTDRGGE TS E
Sbjct: 509 KRYLISFIDDYSRKTWVYFLNEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQE 568

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPK 137
           F+ FC   GI RQLT  YTPQ NGVAERK+R+IM+MV+S+LS K+VPK
Sbjct: 569 FNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPK 616



 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 32/44 (72%), Positives = 42/44 (95%)
 Frame = -1

Query: 134 LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           +H+ +AKRKKLDNKS KCVLLG++EESKAY+LYDPI+++I+VSR
Sbjct: 666 VHIPEAKRKKLDNKSYKCVLLGVSEESKAYRLYDPISERIVVSR 709


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  224 bits (570), Expect = 7e-64
 Identities = 108/168 (64%), Positives = 128/168 (76%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           + MV+GLP  + S+K+C+DC++GK HRE  PKKS WRASH LQLIH DICGPIKP SN  
Sbjct: 451 RKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSR 510

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRY ++F+DDYS   WV FL EKS A   FK FK  VEKE+G  I+ LRTDRGGE TS E
Sbjct: 511 KRYLISFIDDYSRKTWVYFLYEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQE 570

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPK 137
           F+ FC   GI RQLT  YTPQ NGVAERK+R+IM+MV+S+LS K+VPK
Sbjct: 571 FNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQVPK 618



 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 30/44 (68%), Positives = 42/44 (95%)
 Frame = -1

Query: 134 LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           +H+ +AKRKKLD+KS KCVLLG+++ESKAY+LYDPI+++I+VSR
Sbjct: 668 VHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPISERIVVSR 711


>dbj|GAU31045.1| hypothetical protein TSUD_214810 [Trifolium subterraneum]
          Length = 1248

 Score =  216 bits (549), Expect(2) = 2e-63
 Identities = 100/170 (58%), Positives = 128/170 (75%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           K+MV+GLP ++++T+ CEDC+IGKH R+  P  + WRA+  LQL+H DICGPI P SN  
Sbjct: 391 KEMVKGLPVLQETTETCEDCIIGKHQRDSIPMSANWRATEELQLVHSDICGPINPTSNGG 450

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
            RYF+TF DD+S   W   LTEKS+AL  FK+FKA  E ES   +K LRTDRGGE TS E
Sbjct: 451 SRYFITFTDDFSRKTWTYVLTEKSNALTIFKKFKAITENESNCKLKCLRTDRGGEFTSTE 510

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F+ FC + GIKRQLTT YTPQ NGV+ERK+R+IM+MV+S+++ K VPK +
Sbjct: 511 FNDFCSEHGIKRQLTTAYTPQQNGVSERKNRTIMNMVRSMIAEKGVPKRF 560



 Score = 55.5 bits (132), Expect(2) = 2e-63
 Identities = 24/33 (72%), Positives = 31/33 (93%)
 Frame = -1

Query: 101 DNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           D KS+KCV LGI++ESKAYKLYDP++KKI++SR
Sbjct: 591 DPKSVKCVHLGISDESKAYKLYDPVSKKIIISR 623


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  221 bits (562), Expect = 8e-63
 Identities = 107/170 (62%), Positives = 130/170 (76%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           K MV GLP I+   K+C +C+IGK HR+   KKS WRAS+ LQL+H DICGPIKPESN +
Sbjct: 452 KKMVNGLPSIQIPKKLCTECLIGKQHRDSMSKKSLWRASNKLQLVHADICGPIKPESNSN 511

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRYFL+F+DD++   W+ FL EKS A   FK FKA VEKESGA I +LRTDRGGE  S+E
Sbjct: 512 KRYFLSFIDDFTRKTWIYFLHEKSEAFAMFKNFKAYVEKESGAYITSLRTDRGGEFNSNE 571

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F++FC   GI RQLT  YTPQ NGVAERK+R+IM+MV+S+L  KKVPK +
Sbjct: 572 FEEFCKVQGISRQLTAAYTPQQNGVAERKNRTIMNMVRSMLVEKKVPKMF 621



 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 29/43 (67%), Positives = 39/43 (90%)
 Frame = -1

Query: 131 HVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           H+ D KR KLD+KS KCVLLG+++ESKAYKLYDP++KKI++S+
Sbjct: 670 HIPDQKRSKLDDKSKKCVLLGVSDESKAYKLYDPVSKKIIISK 712


>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  220 bits (561), Expect = 1e-62
 Identities = 103/170 (60%), Positives = 128/170 (75%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           K+MVRGLP+   S+ +C +C+ GK HR+P PKKS WRA+  L+LIH D+CGPI P SN +
Sbjct: 448 KNMVRGLPQFSISSVICTNCINGKQHRDPIPKKSNWRATQKLELIHADVCGPISPSSNSN 507

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRY L F+DDYS  +WV FL EKS AL  FK FK  VEKE+   IK LRTDRGGE  S+E
Sbjct: 508 KRYILLFIDDYSRKSWVYFLVEKSEALNSFKCFKTMVEKEAEMAIKCLRTDRGGEFNSNE 567

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F+ FC  SG+KRQLTT YTPQ NGVAERK+R++M+MV+S+L  K +PK +
Sbjct: 568 FNDFCKQSGVKRQLTTAYTPQQNGVAERKNRTVMNMVRSLLFDKNIPKTF 617



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 27/44 (61%), Positives = 39/44 (88%)
 Frame = -1

Query: 134 LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           +HV +AKR KLD++S+ CVLLG++EESK Y+ +DP++KKI+VSR
Sbjct: 665 VHVPEAKRTKLDSRSITCVLLGVSEESKGYRFFDPVSKKIVVSR 708


>dbj|GAU27929.1| hypothetical protein TSUD_160240 [Trifolium subterraneum]
          Length = 1197

 Score =  204 bits (519), Expect(2) = 1e-62
 Identities = 98/170 (57%), Positives = 125/170 (73%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           KDMV+GLP + +  + C DC++GK HRE  PK++ WRA+  LQLIH DICGPI P SN  
Sbjct: 371 KDMVKGLPALRELNEKCTDCLMGKQHREVIPKQAKWRATAKLQLIHYDICGPINPSSNGG 430

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRYFLTF DD+S   WV  L EKS A   FK FKA VE ESG  I++LRT RGGE TS  
Sbjct: 431 KRYFLTFTDDFSRKTWVYILKEKSKAFATFKNFKAMVELESGCMIQSLRTYRGGEFTSSA 490

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F++FC+  GIKRQLTT YTPQ NGV+ERK+R+++++V+S+L+ + V K +
Sbjct: 491 FNEFCISEGIKRQLTTAYTPQQNGVSERKNRTLLNIVRSMLASRNVHKRF 540



 Score = 63.9 bits (154), Expect(2) = 1e-62
 Identities = 29/47 (61%), Positives = 39/47 (82%)
 Frame = -1

Query: 143 SKELHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           S+ +H+ D  RKKLD+KS+KCV LGI+ ESKAY+LY+PI  KI++SR
Sbjct: 559 SEYVHIPDNHRKKLDSKSIKCVHLGISHESKAYRLYNPIENKIVISR 605


>gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 298

 Score =  205 bits (522), Expect = 2e-62
 Identities = 99/170 (58%), Positives = 124/170 (72%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           + MV+GLP ++ S ++C DCVI KHHR+  PK + WRAS  L+LIH DICGPI P SN  
Sbjct: 115 RTMVKGLPILKDSAELCPDCVISKHHRDSIPKTASWRASSKLELIHSDICGPINPSSNGG 174

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
            RYF+TF DD+S   W   L  KSSA E F++FKA VEKE    IK LRTDRGGE TS +
Sbjct: 175 CRYFITFTDDFSRKTWTYPLKNKSSAFEVFRKFKALVEKELDHQIKCLRTDRGGEFTSSQ 234

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F+ FC + GIKRQLTT YTPQ NGV+ERK+R++M+MV+S++S   VPK +
Sbjct: 235 FNDFCSEHGIKRQLTTAYTPQQNGVSERKNRTLMNMVRSMMSGMNVPKRF 284


>emb|CAN76379.1| hypothetical protein VITISV_017862 [Vitis vinifera]
          Length = 639

 Score =  214 bits (545), Expect = 2e-62
 Identities = 101/168 (60%), Positives = 126/168 (75%)
 Frame = -2

Query: 634 MVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRHKR 455
           MV GLP+ E S  VC DC++G  HR P PKKS WRA   LQLIH DICGPI P  N  KR
Sbjct: 436 MVNGLPQFEASKTVCTDCMVGTQHRNPIPKKSTWRACSKLQLIHADICGPITPILNSKKR 495

Query: 454 YFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHEFD 275
           Y ++F+DD+S  AW+  L EKS AL  FKQ+K+CVEKE+ + IK LR +RGGE TS +F+
Sbjct: 496 YLISFIDDFSRKAWIYLLVEKSKALVIFKQYKSCVEKETSSYIKCLRINRGGEFTSQDFN 555

Query: 274 KFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           +FC ++GIKRQL   YTPQ NGVAERK+R+IM+MV+S+LS KK+PK +
Sbjct: 556 EFCKENGIKRQLIVAYTPQQNGVAERKNRTIMNMVRSMLSKKKLPKTF 603


>gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1062

 Score =  219 bits (558), Expect = 2e-62
 Identities = 109/170 (64%), Positives = 131/170 (77%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           K+MVRGLPK++ S+ VC DC+IGK HREPF K S  RA+  LQLIH D+ GPIKPESN +
Sbjct: 470 KNMVRGLPKLQDSSNVCSDCMIGKQHREPFLKVSTRRATKRLQLIHADVFGPIKPESNSN 529

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRYFLTF+DD+S   WV FL+EKSS LE FK+FKA VEKE+   I  LRTDRGGE TS +
Sbjct: 530 KRYFLTFIDDFSRKTWVYFLSEKSSVLEMFKKFKAMVEKETSDAICCLRTDRGGEFTSTD 589

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F+ FC   GIKRQLT  YTP  NGV ERK+R+IM+MV+S+LS K +PK +
Sbjct: 590 FNTFCSLHGIKRQLTVAYTPHQNGVVERKNRTIMNMVRSMLSGKGIPKEF 639


>gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 690

 Score =  215 bits (547), Expect = 2e-62
 Identities = 107/171 (62%), Positives = 127/171 (74%), Gaps = 1/171 (0%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTK-VCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNR 464
           K MVRGLP    +T+ VCEDC  GK HR+P PKKS WRA   L+LIH DICGPI P SN 
Sbjct: 451 KGMVRGLPSSLSTTENVCEDCTKGKQHRDPIPKKSQWRAKQKLELIHADICGPITPSSNS 510

Query: 463 HKRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSH 284
            KRYFL F+DDYS   W+ FLT+KS A   F+ FK  VEKESG  IK L TDRGGE TS 
Sbjct: 511 QKRYFLCFIDDYSRKTWIYFLTKKSEAFHYFQCFKNLVEKESGLMIKCLITDRGGEFTSL 570

Query: 283 EFDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           EF++FC  +GIKRQLT  YTPQ NGVAERK+R+IM++V ++LS KK+PK++
Sbjct: 571 EFNEFCQKTGIKRQLTIAYTPQQNGVAERKNRTIMNLVTTLLSEKKLPKSF 621


>gb|PNY07765.1| putative copia-type polyprotein [Trifolium pratense]
          Length = 1321

 Score =  218 bits (556), Expect = 5e-62
 Identities = 103/170 (60%), Positives = 130/170 (76%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           K+MV+GLP+IE  + VCE+C+I K HR  FP++S WRASHVLQL+H DICGP+ P SN +
Sbjct: 451 KEMVKGLPQIETPSHVCEECLIAKQHRNSFPQESTWRASHVLQLVHSDICGPMNPTSNSN 510

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRYF+TF DD+S   WV FL EKS ALE F++FKA VEKE    I+ LRTDRGGE TS E
Sbjct: 511 KRYFITFTDDFSRKTWVYFLKEKSEALEMFRKFKARVEKEKNQPIQCLRTDRGGEYTSSE 570

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F   C  +GIKRQLT  YTP  NGV+ER++ +IM+MV+S+L++K VPK +
Sbjct: 571 FVNLCESNGIKRQLTAAYTPHQNGVSERRNITIMNMVRSMLTNKNVPKTF 620



 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 30/44 (68%), Positives = 38/44 (86%)
 Frame = -1

Query: 134 LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           +HV D KRKKLDNK  KCVLLG++EESKAY+LY+P+ KKI +S+
Sbjct: 668 VHVPDQKRKKLDNKGEKCVLLGVSEESKAYRLYNPLTKKICISK 711


>gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]
          Length = 1328

 Score =  218 bits (555), Expect = 7e-62
 Identities = 101/170 (59%), Positives = 129/170 (75%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           K+MVRGLP +++++ VC DC+ GK HRE  PKK  WRA+H L+LIH DICGPI P SN  
Sbjct: 448 KEMVRGLPALKEASDVCSDCLFGKQHREVIPKKVNWRATHKLELIHSDICGPINPASNSG 507

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
            +YF+TF DD++   WV  L +K+SA E FK+FKA  EKESG  I +LRTDRGGE  S  
Sbjct: 508 NKYFITFTDDFTRKTWVYILQDKASAFESFKRFKAVAEKESGCQILSLRTDRGGEFMSEA 567

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F+K+C + GIKRQLTT YTPQ NGV+ERK+R+IM+MV+ +L+ KKVPK +
Sbjct: 568 FNKYCTEQGIKRQLTTAYTPQQNGVSERKNRTIMNMVRCMLNDKKVPKKF 617



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 31/44 (70%), Positives = 41/44 (93%)
 Frame = -1

Query: 134 LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           +HV DA+RKKLDNKS KC+ LG++EESKAYKLY+PI++KI++SR
Sbjct: 665 VHVPDAQRKKLDNKSTKCIHLGVSEESKAYKLYNPIDRKIIISR 708


>gb|KYP57183.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 884

 Score =  214 bits (545), Expect = 4e-61
 Identities = 101/170 (59%), Positives = 124/170 (72%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           K+MV GLPKI   T++CEDC++GK HR+ FP    WRA  +LQL+H DICGPI P SN +
Sbjct: 426 KNMVEGLPKINCPTEICEDCIVGKQHRDSFPHGKAWRAQQILQLVHSDICGPINPTSNGN 485

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRYF+ F+DD+S   WV FL EKS A   FK FK+ VEKESG  I+ LRTDRGGE  SH 
Sbjct: 486 KRYFIIFIDDHSRKTWVYFLQEKSEAFLIFKSFKSRVEKESGKYIQILRTDRGGEFNSHN 545

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F  FC   GI+RQLT  YTPQ NGVAERK+++IM+MV+S+L  K +PK +
Sbjct: 546 FASFCELHGIQRQLTAAYTPQQNGVAERKNQTIMNMVRSMLVKKNIPKTF 595



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 28/43 (65%), Positives = 37/43 (86%)
 Frame = -1

Query: 131 HVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           HV D KR KLD+KS+KCV +G++EESKAY+LY+P  KKI++SR
Sbjct: 644 HVPDEKRTKLDDKSVKCVFVGVSEESKAYRLYNPTTKKIIISR 686


>gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 886

 Score =  214 bits (545), Expect = 4e-61
 Identities = 100/170 (58%), Positives = 127/170 (74%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           KDMV+GLP ++++ +VC DC  GK  RE  PK + WRAS  LQL+H DICGPI P SN  
Sbjct: 445 KDMVKGLPTLQETDEVCSDCATGKQSREAIPKSNNWRASEKLQLVHSDICGPINPASNGG 504

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
            RYF+TF DD+S   W   L  KS+A E FK+FKA VEKES   I+TLRTDRGGE TSHE
Sbjct: 505 SRYFITFTDDFSRKTWTYPLAAKSNAFEIFKKFKALVEKESNCNIQTLRTDRGGEFTSHE 564

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNY 131
           F++FC  +GIKRQLT  YTPQ NGV+ERK+R++++MV+S+L+ + VPK +
Sbjct: 565 FNEFCSTNGIKRQLTAAYTPQQNGVSERKNRTLLNMVRSMLNGRNVPKRF 614



 Score = 66.6 bits (161), Expect = 4e-09
 Identities = 32/43 (74%), Positives = 36/43 (83%)
 Frame = -1

Query: 131 HVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           HV D  RKKLD K+ KCV LGI+EESKAYKLYDPI KKI++SR
Sbjct: 663 HVPDVLRKKLDPKASKCVHLGISEESKAYKLYDPIQKKIIISR 705


>gb|PNX95763.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1327

 Score =  215 bits (547), Expect = 9e-61
 Identities = 100/180 (55%), Positives = 129/180 (71%)
 Frame = -2

Query: 640 KDMVRGLPKIEKSTKVCEDCVIGKHHREPFPKKSPWRASHVLQLIHGDICGPIKPESNRH 461
           + MV GLP ++   K+C  C++GK HR+P PK++ WRA+H LQL+H DICGPI P SN +
Sbjct: 450 RGMVEGLPTVKTPQKLCTHCLVGKQHRDPIPKRNLWRATHKLQLVHSDICGPISPISNSN 509

Query: 460 KRYFLTFVDDYSW*AWVNFLTEKSSALECFKQFKACVEKESGAGIKTLRTDRGGESTSHE 281
           KRY L+F+DD++   W+ FL +KS ALE FK FK   EKE+G  IK LRTDRGGE  S E
Sbjct: 510 KRYILSFIDDFTRKTWIYFLNQKSEALEAFKGFKTWTEKEAGTSIKCLRTDRGGEYNSKE 569

Query: 280 FDKFCVDSGIKRQLTTIYTPQLNGVAERKSRSIMDMVKSILSHKKVPKNYMSLMQRERNW 101
           F +FC   GI RQLT  YTPQ NGVAERK+R+IM+MV+S+LS K++PK + +      NW
Sbjct: 570 FTEFCSTHGINRQLTAAYTPQQNGVAERKNRTIMNMVRSMLSEKQMPKEFWA---EAANW 626



 Score = 57.8 bits (138), Expect = 4e-06
 Identities = 27/44 (61%), Positives = 35/44 (79%)
 Frame = -1

Query: 134 LHVLDAKRKKLDNKSLKCVLLGINEESKAYKLYDPINKKILVSR 3
           +HV D KR KLD+KS   + LG+++ESKAYKL+DPI KKI +SR
Sbjct: 667 VHVPDQKRIKLDDKSKTHIFLGVSKESKAYKLFDPITKKITISR 710