BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00021428
         (1130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX92765.1| ribonuclease H [Trifolium pratense]                    100   7e-38
gb|PNX92714.1| ribonuclease H [Trifolium pratense]                    100   7e-34
dbj|GAU22350.1| hypothetical protein TSUD_106780 [Trifolium subt...    94   1e-30
dbj|GAU11845.1| hypothetical protein TSUD_75960 [Trifolium subte...    91   8e-30
gb|PNY05589.1| ribonuclease H [Trifolium pratense]                     80   2e-29
gb|PNX92211.1| ribonuclease H, partial [Trifolium pratense]            80   2e-29
dbj|GAU35042.1| hypothetical protein TSUD_30080 [Trifolium subte...    93   6e-29
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...    82   8e-29
gb|ABE80156.1| Ribonuclease H [Medicago truncatula]                    81   2e-28
dbj|GAU22731.1| hypothetical protein TSUD_138560 [Trifolium subt...    84   5e-28
dbj|GAU49954.1| hypothetical protein TSUD_180180 [Trifolium subt...    94   2e-27
dbj|GAU17063.1| hypothetical protein TSUD_105620 [Trifolium subt...    85   4e-27
dbj|GAU18899.1| hypothetical protein TSUD_228890 [Trifolium subt...    76   7e-27
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    93   1e-26
dbj|GAU20604.1| hypothetical protein TSUD_33400 [Trifolium subte...    75   2e-26
dbj|GAU50297.1| hypothetical protein TSUD_288310 [Trifolium subt...    87   3e-26
gb|PNX77884.1| ribonuclease H [Trifolium pratense]                     80   1e-25
gb|PNY14401.1| ribonuclease H [Trifolium pratense]                     84   1e-25
gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]            74   1e-24
dbj|GAU50029.1| hypothetical protein TSUD_240220 [Trifolium subt...    74   9e-24

>gb|PNX92765.1| ribonuclease H [Trifolium pratense]
          Length = 1310

 Score =  100 bits (250), Expect(2) = 7e-38
 Identities = 49/121 (40%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
 Frame = +1

Query: 766  DFPNSSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANE 945
            D   + R+W ++G+ +  FFS++ +  WL+  +   +   F+AG+WW WRARN   + NE
Sbjct: 1049 DCTTAKRIWEALGYSNISFFSSNNLESWLKIHSYGPAANLFLAGLWWNWRARNIVCVGNE 1108

Query: 946  EIPLYKLKIDVISLANLI-SASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRS 1122
             I +Y++ I+V  LA+LI S       A   PRWV+WH S++   VLNVDGS +G+ GR+
Sbjct: 1109 SIHMYQILIEVRKLASLILSCFSIVPSALKPPRWVTWHPSRDVGFVLNVDGSCLGDSGRA 1168

Query: 1123 G 1125
            G
Sbjct: 1169 G 1169



 Score = 86.7 bits (213), Expect(2) = 7e-38
 Identities = 39/82 (47%), Positives = 51/82 (62%)
 Frame = +2

Query: 515  IVNETVPGCFFSWTNHLDGNYSARSGYSWLLKQLYPSHSVTSDWQWLWKAPVPEKIRILL 694
            I+N     CF  W  ++DG Y+A SGY WLL+Q Y   S+ S W W+WK   PEKI+ L+
Sbjct: 951  ILNNGTIDCFI-WQGNIDGIYNASSGYKWLLQQKYNVPSIQS-WNWIWKLQAPEKIKFLI 1008

Query: 695  WLTCPNSLPLASVLHHRNMLPS 760
            W  C +S+P   +LHHRNM  S
Sbjct: 1009 WCACHHSIPTMYMLHHRNMTSS 1030


>gb|PNX92714.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score =  100 bits (250), Expect(2) = 7e-34
 Identities = 47/121 (38%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
 Frame = +1

Query: 766  DFPNSSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANE 945
            D P S  LW SIGF +  F+  +  I W+++G    S   F AG+WW WR RN+    NE
Sbjct: 1097 DCPTSKNLWFSIGFSAPQFYDTTDNISWIKEGTSGSSLNIFAAGVWWAWRNRNSMCFTNE 1156

Query: 946  EIPLYKLKIDVISLANLISAS-GASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRS 1122
             IP Y+L ++   ++ L S+    +S    V  +V W++S   C +LNVDGS +G P R+
Sbjct: 1157 HIPQYRLIMEAKLMSQLFSSCFSTNSSGTLVDHFVKWNASNMTCIILNVDGSCLGTPCRA 1216

Query: 1123 G 1125
            G
Sbjct: 1217 G 1217



 Score = 73.2 bits (178), Expect(2) = 7e-34
 Identities = 35/106 (33%), Positives = 57/106 (53%)
 Frame = +2

Query: 443  SDIELPMQQIQHHIMVYVSFSLAAIVNETVPGCFFSWTNHLDGNYSARSGYSWLLKQLYP 622
            +++ L   Q+   +++ ++ S+    N T+      W+ +  G Y+  SGY W+L  L  
Sbjct: 976  ANLHLLYTQLPQEVVISLN-SMKFSFNSTIEDTMI-WSANKHGTYTTSSGYLWILS-LRS 1032

Query: 623  SHSVTSDWQWLWKAPVPEKIRILLWLTCPNSLPLASVLHHRNMLPS 760
                   W+W+W   +PEKI+ L WL C NS+P  ++LHHRNM  S
Sbjct: 1033 QLQSNQSWKWIWSLHLPEKIKFLFWLACHNSVPTLALLHHRNMSSS 1078


>dbj|GAU22350.1| hypothetical protein TSUD_106780 [Trifolium subterraneum]
          Length = 1200

 Score = 94.4 bits (233), Expect(2) = 1e-30
 Identities = 49/120 (40%), Positives = 68/120 (56%)
 Frame = +1

Query: 766  DFPNSSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANE 945
            DF N  R+W+SIGF    FF    V  WL +G  + +   F+AGIWW WRARN   L +E
Sbjct: 998  DFVN--RIWKSIGFLDQNFFQGVDVYAWLHNGLNSPTMMLFIAGIWWIWRARNAMCLDSE 1055

Query: 946  EIPLYKLKIDVISLANLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
             +  +  K+ ++  A L+     S+   S  ++V W++      +LNVDGSSIGNPG SG
Sbjct: 1056 MVSFWSQKLRIMDYALLLKNCYFSTHEISTTKFVKWNALGGTGLILNVDGSSIGNPGISG 1115



 Score = 68.9 bits (167), Expect(2) = 1e-30
 Identities = 31/98 (31%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
 Frame = +2

Query: 464  QQIQHHIMVYVSFSLAAIVNETVPGCFFSWTNHLDGNYSARSGYSWLLKQLYPSHSVT-S 640
            Q+I+ ++  +++ SL   VN+      ++W  +L+G Y+AR GY+WL +  + + +++ +
Sbjct: 884  QEIKENLN-FITISLNPSVNDC-----YTWKGNLNGIYTARDGYAWLNRHSFSATTISVA 937

Query: 641  DWQWLWKAPVPEKIRILLWLTCPNSLPLASVLHHRNML 754
             W WLW    PEK++   W    NSLP   +L HR ++
Sbjct: 938  SWSWLWHVSAPEKLKFFFWTMLHNSLPTRDMLAHRGII 975


>dbj|GAU11845.1| hypothetical protein TSUD_75960 [Trifolium subterraneum]
          Length = 386

 Score = 90.5 bits (223), Expect(2) = 8e-30
 Identities = 44/113 (38%), Positives = 63/113 (55%)
 Frame = +1

Query: 787  LWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKL 966
            +W+S+GF    FF       WLR+G    S   F+A IWW WR RN   L NE +P + L
Sbjct: 188  IWKSLGFTDHNFFQEVDSSSWLRNGLSCSSMFLFMAAIWWIWRTRNALCLDNELVPQFSL 247

Query: 967  KIDVISLANLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
            K+ ++  A L+     + +  ++P+ V W++      +LNVD SSIGNPG SG
Sbjct: 248  KMRIVDYALLLKNCHFNYQVTTLPKIVRWNALGGTSMILNVDRSSIGNPGISG 300



 Score = 70.1 bits (170), Expect(2) = 8e-30
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
 Frame = +2

Query: 503 SLAAIVNETVPGCFFSWTNHLDGNYSARSGYSWLLKQLYPSH--SVTSDWQWLWKAPVPE 676
           S    +N ++  C+ +W  +L G Y+AR GY WL +  + ++  SV S W WLW  P PE
Sbjct: 77  SFPICLNPSINDCY-TWKGNLQGIYTARDGYHWLNRYAFSANPTSVVS-WSWLWHLPAPE 134

Query: 677 KIRILLWLTCPNSLPLASVLHHRNML 754
           KI+  +W    NSLP   +L HR ++
Sbjct: 135 KIKFFIWTLLHNSLPTRDMLTHRGII 160


>gb|PNY05589.1| ribonuclease H [Trifolium pratense]
          Length = 1360

 Score = 79.7 bits (195), Expect(2) = 2e-29
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
 Frame = +2

Query: 545  FSWTNHLDGNYSARSGYSWLL--KQLYPSHSVTSDWQWLWKAPVPEKIRILLWLTCPNSL 718
            F W N+ +G Y+ +SGY WLL  K+  PSH  T  W WLWK   PEK++ L WL C +++
Sbjct: 1009 FIWHNNKNGVYTTKSGYDWLLSRKEQVPSHPHT--WAWLWKLQAPEKLKFLFWLACHDAV 1066

Query: 719  PLASVLHHRNMLPS 760
            P  + LH RN+ PS
Sbjct: 1067 PTLTTLHRRNIAPS 1080



 Score = 79.7 bits (195), Expect(2) = 2e-29
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
 Frame = +1

Query: 778  SSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPL 957
            S  +W S+GF    FF  + V  WL++G  + +  +F AG+WW WR RN   L +E    
Sbjct: 1103 SKCVWTSMGFTYSGFFDTTSVHSWLKNGCFSPNNFTFTAGVWWVWRHRNLMCLNDETWST 1162

Query: 958  YKLKIDVISLA-NLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
             +L  ++ S+  NL +   +SS   +  R V W+SS     +LN DGS IG+P R+G
Sbjct: 1163 VRLSFNIRSMVENLKACFPSSSNDDTSSRTVKWNSSNFPGYILNTDGSCIGSPTRAG 1219


>gb|PNX92211.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1462

 Score = 79.7 bits (195), Expect(2) = 2e-29
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
 Frame = +2

Query: 545  FSWTNHLDGNYSARSGYSWLL--KQLYPSHSVTSDWQWLWKAPVPEKIRILLWLTCPNSL 718
            F W N+ +G Y+ +SGY WLL  K+  PSH  T  W WLWK   PEK++ L WL C +++
Sbjct: 1224 FIWHNNKNGVYTTKSGYDWLLSRKEQVPSHPHT--WAWLWKLQAPEKLKFLFWLACHDAV 1281

Query: 719  PLASVLHHRNMLPS 760
            P  + LH RN+ PS
Sbjct: 1282 PTLTTLHRRNIAPS 1295



 Score = 79.3 bits (194), Expect(2) = 2e-29
 Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 1/117 (0%)
 Frame = +1

Query: 778  SSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPL 957
            S R+W S+GF  + FF  + V  WL++G  + +  +F AG+WW WR RN   L +E    
Sbjct: 1318 SKRVWTSMGFTYNGFFDTTSVHSWLKNGCFSPNNFTFTAGVWWAWRRRNLMCLNDETWST 1377

Query: 958  YKLKIDVISLA-NLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
             +L  ++ S+  NL +   +S+   +  R V W+SS     +LN D S IG+P R+G
Sbjct: 1378 VRLSFNIRSMVENLKACFPSSTNDDANSRTVKWNSSNFPGYILNTDDSYIGSPTRAG 1434


>dbj|GAU35042.1| hypothetical protein TSUD_30080 [Trifolium subterraneum]
          Length = 724

 Score = 92.8 bits (229), Expect(2) = 6e-29
 Identities = 45/113 (39%), Positives = 64/113 (56%)
 Frame = +1

Query: 787  LWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKL 966
            +W+S+GF    FF       WLR+G    S   F+A IWW WR RN   L NE IP + L
Sbjct: 472  IWKSLGFTDRNFFQEVDSSSWLRNGLSCSSMFLFMAAIWWIWRTRNALCLDNELIPQFSL 531

Query: 967  KIDVISLANLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
            K+ ++  A L+     + +  ++P+ V W++      +LNVDGS+IGNPG SG
Sbjct: 532  KMRIVDYALLLKNCHFNHQVTTLPKIVRWNALGGTSMILNVDGSTIGNPGISG 584



 Score = 64.7 bits (156), Expect(2) = 6e-29
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
 Frame = +2

Query: 503 SLAAIVNETVPGCFFSWTNHLDGNYSARSGYSWLLKQLYPSH--SVTSDWQWLWKAPVPE 676
           S    +N ++  C+ +W  +L G Y+A  GY WL +  + ++  SV S W WLW  P PE
Sbjct: 380 SFPICLNPSINDCY-TWKGNLQGIYTAWDGYHWLNRNAFSANPTSVVS-WSWLWHLPAPE 437

Query: 677 KIRILLWLTCPNSLPLASVLHHRNMLPSRSIFQTL 781
           KI+  +W    NSL    +L HR ++   +   T+
Sbjct: 438 KIKFFIWTLLHNSLATRDMLTHRGIIHDCNFVYTI 472


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 869

 Score = 82.4 bits (202), Expect(2) = 8e-29
 Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
 Frame = +1

Query: 766  DFPNSSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANE 945
            D P S  +W  IGF    FF+ + +  W + G        F AG+WW WR+RN   ++ E
Sbjct: 608  DCPFSKIIWHHIGFSEPYFFAVTDIEIWCKSGLIGSKAILFAAGLWWIWRSRNARCMSEE 667

Query: 946  EIPLYKLKIDVISLANLISASGASSRAPSV-PRWVSWHSSKEDCTVLNVDGSSIGNPGRS 1122
             + L +L  ++    + I++         V  R+V W++S  +CT+LNVDGS IG+P R+
Sbjct: 668  SMLLQRLAANITYFVDDINSCFFQPLPVMVSDRYVKWNNSNFNCTILNVDGSCIGSPIRA 727

Query: 1123 G 1125
            G
Sbjct: 728  G 728



 Score = 74.7 bits (182), Expect(2) = 8e-29
 Identities = 32/72 (44%), Positives = 47/72 (65%)
 Frame = +2

Query: 545 FSWTNHLDGNYSARSGYSWLLKQLYPSHSVTSDWQWLWKAPVPEKIRILLWLTCPNSLPL 724
           F W ++ +G YSA+SGY WLL  L  + + T  W W+ K  + EK + L+WL C +SLP 
Sbjct: 519 FIWPHNKNGTYSAKSGYQWLLS-LSGNDNNTHSWSWILKKKISEKYKFLIWLACHDSLPT 577

Query: 725 ASVLHHRNMLPS 760
           A++LHHR ++ S
Sbjct: 578 AALLHHRQIIAS 589


>gb|ABE80156.1| Ribonuclease H [Medicago truncatula]
          Length = 438

 Score = 81.3 bits (199), Expect(2) = 2e-28
 Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
 Frame = +1

Query: 778  SSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPL 957
            S  +W+ IGF  + FF+ +   DW + G  +     F  G+WW WR RN   L NE + L
Sbjct: 181  SRSIWQKIGFTGNDFFTATSAHDWFKIGMSSSLPDIFFGGLWWAWRHRNLMCLNNETMSL 240

Query: 958  YKLKIDVISLANLI-SASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
            ++L  +++S A  I SA  +        R+V W++      +LNVDGS +G P R+G
Sbjct: 241  FRLCNNIVSAATYIKSAFDSEENVNHSDRFVKWNNRNHHDHILNVDGSCLGTPSRTG 297



 Score = 74.7 bits (182), Expect(2) = 2e-28
 Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
 Frame = +2

Query: 551 WTNHLDGNYSARSGYSWLLKQLYPSHSVTS--DWQWLWKAPVPEKIRILLWLTCPNSLPL 724
           W+ + +G YS +SG+ WLL    P+  +     W W+W   VPEK + L+WL C N +P 
Sbjct: 87  WSQNKNGTYSTKSGFHWLLTFRVPATDIIPHPSWSWIWNLQVPEKYKFLIWLACQNVVPT 146

Query: 725 ASVLHHRNMLPS 760
            S+LH RN+ PS
Sbjct: 147 LSLLHRRNIAPS 158


>dbj|GAU22731.1| hypothetical protein TSUD_138560 [Trifolium subterraneum]
          Length = 385

 Score = 84.0 bits (206), Expect(2) = 5e-28
 Identities = 40/109 (36%), Positives = 58/109 (53%)
 Frame = +1

Query: 787  LWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKL 966
            LW++IG+    FF    +  WLR G  + S   F+A +WW WRARN   LANE +  + +
Sbjct: 277  LWKTIGYTDQTFFQGDNLYAWLRKGCDSPSMFMFLAAVWWIWRARNKLCLANELVSQFTI 336

Query: 967  KIDVISLANLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNP 1113
            +  +     L+       ++ S  R V W++      +LNVDGSSIGNP
Sbjct: 337  RRCIGDYTLLLQKCYFKQKSTSSSRLVCWNAHDGTNMILNVDGSSIGNP 385



 Score = 70.5 bits (171), Expect(2) = 5e-28
 Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
 Frame = +2

Query: 545 FSWTNHLDGNYSARSGYSWLLKQLYPSHSVTSD--WQWLWKAPVPEKIRILLWLTCPNSL 718
           ++W  +L+G Y+A+ GY WL  ++ P++S T D  W WLW    PEKI+  LW    NSL
Sbjct: 179 YTWKGNLNGLYTAQDGYHWL-NRVKPTNSSTKDISWSWLWHIEAPEKIKFFLWTALHNSL 237

Query: 719 PLASVLHHRNML 754
           P  ++L HR +L
Sbjct: 238 PTRAMLSHRGLL 249


>dbj|GAU49954.1| hypothetical protein TSUD_180180 [Trifolium subterraneum]
          Length = 968

 Score = 94.4 bits (233), Expect(2) = 2e-27
 Identities = 48/117 (41%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
 Frame = +1

Query: 778  SSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPL 957
            S  LW  IGF +  FFSN  V DWL+ GA       F AG+WW WR RN   L NE   L
Sbjct: 711  SRSLWHHIGFTNPNFFSNMDVYDWLKMGATGTQSLIFSAGVWWSWRHRNLMSLNNETWTL 770

Query: 958  YKLKIDVISLANLI-SASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
             +L  ++ S+     +     S   SV R++ W ++   CT+LNVDGS +G+P R+G
Sbjct: 771  SRLSFNIRSMVETFKNCCTPVSNVGSVDRFIKWKNNNFSCTILNVDGSCLGSPARAG 827



 Score = 58.2 bits (139), Expect(2) = 2e-27
 Identities = 22/42 (52%), Positives = 29/42 (69%)
 Frame = +2

Query: 635 TSDWQWLWKAPVPEKIRILLWLTCPNSLPLASVLHHRNMLPS 760
           +  W W+WK  +PEKI+  LWL C NS+P  S+L+HR M PS
Sbjct: 647 SQSWTWIWKLHLPEKIKFFLWLACHNSVPTLSLLNHRKMNPS 688


>dbj|GAU17063.1| hypothetical protein TSUD_105620 [Trifolium subterraneum]
          Length = 440

 Score = 84.7 bits (208), Expect(2) = 4e-27
 Identities = 41/109 (37%), Positives = 58/109 (53%)
 Frame = +1

Query: 787  LWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKL 966
            LW++IGF    FF    +  WLR G  + S   F+A +WW WRARN   LANE +  + +
Sbjct: 188  LWKTIGFTDQTFFHGDNLYAWLRKGCDSPSMFMFLAALWWIWRARNKLCLANELVSPFTI 247

Query: 967  KIDVISLANLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNP 1113
               +   A L+    +  ++    R V W++      +LNVDGSSIGNP
Sbjct: 248  SRCIEDYALLVKKCYSQQKSTLANRLVRWNAHDGTDMILNVDGSSIGNP 296



 Score = 66.6 bits (161), Expect(2) = 4e-27
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +2

Query: 545 FSWTNHLDGNYSARSGYSWLLKQLYPSHSVTS-DWQWLWKAPVPEKIRILLWLTCPNSLP 721
           ++W  +L+G Y+AR GY WL +    ++S+    W WLW    PEKI+  LW    N+LP
Sbjct: 90  YTWKGNLNGIYTARDGYHWLNRIESTNNSIEDISWSWLWHIEAPEKIKFFLWTALHNALP 149

Query: 722 LASVLHHRNML 754
             ++L HR +L
Sbjct: 150 TRAMLSHRRLL 160


>dbj|GAU18899.1| hypothetical protein TSUD_228890 [Trifolium subterraneum]
          Length = 1098

 Score = 75.9 bits (185), Expect(2) = 7e-27
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
 Frame = +2

Query: 545 FSWTNHLDGNYSARSGYSWLLKQ----LYPSHSVTSDWQWLWKAPVPEKIRILLWLTCPN 712
           F W ++ +G Y+A+SGY WLL +    + P HS    W W+WK   PEK++IL WL C  
Sbjct: 748 FVWNHNKNGVYTAKSGYDWLLSRQEQVIGPFHS----WSWIWKITGPEKLKILFWLACHE 803

Query: 713 SLPLASVLHHRNMLPS 760
           ++P  ++LHHRN+  S
Sbjct: 804 AVPTLAMLHHRNIASS 819



 Score = 74.7 bits (182), Expect(2) = 7e-27
 Identities = 36/120 (30%), Positives = 58/120 (48%)
 Frame = +1

Query: 766  DFPNSSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANE 945
            D  +S  +W  +GF +  FF ++   +WL+    +     F+AG+WW WR RNN  L +E
Sbjct: 838  DCIHSKTVWDQLGFTNSSFFDSTMAHEWLKHSYFSPRRLLFLAGVWWIWRHRNNMCLGDE 897

Query: 946  EIPLYKLKIDVISLANLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
                 +L  ++ S+   +     SS      R + W+ +     V+N DGS  G P R+G
Sbjct: 898  TWSAVRLSCNIYSMVEDLKNCFPSSTTEETSRCIKWNFTNFTGVVINTDGSCSGTPARTG 957


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score = 92.8 bits (229), Expect(2) = 1e-26
 Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
 Frame = +1

Query: 766  DFPNSSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANE 945
            D  +S+ +W  +GF +  FFS S V DW+R+ +      +F+AG+WW WR RN   L+NE
Sbjct: 1034 DCKHSAAIWHKLGFVTAAFFSVSSVQDWIRNFSSGSRAITFLAGLWWSWRHRNLMCLSNE 1093

Query: 946  EIPLYKLKIDVISLANLISASGASSRA--PSVPRWVSWHSSKEDCTVLNVDGSSIGNPGR 1119
              PL ++   +    N I ++   S    P   R V W+     C +LNVDGS +G P R
Sbjct: 1094 TWPLTRISFRINDSINAIRSAFVKSNVIQPDSARMVKWNQGNHQCHILNVDGSCLGTPIR 1153

Query: 1120 SG 1125
            +G
Sbjct: 1154 AG 1155



 Score = 57.0 bits (136), Expect(2) = 1e-26
 Identities = 20/41 (48%), Positives = 28/41 (68%)
 Frame = +2

Query: 638  SDWQWLWKAPVPEKIRILLWLTCPNSLPLASVLHHRNMLPS 760
            S W W+W+   PEK ++L+WL C N+ P  S+LHHR M P+
Sbjct: 975  SVWSWIWQLTAPEKYKLLIWLACHNAAPTLSLLHHRKMAPA 1015


>dbj|GAU20604.1| hypothetical protein TSUD_33400 [Trifolium subterraneum]
          Length = 1174

 Score = 74.7 bits (182), Expect(2) = 2e-26
 Identities = 29/69 (42%), Positives = 44/69 (63%)
 Frame = +2

Query: 545  FSWTNHLDGNYSARSGYSWLLKQLYPSHSVTSDWQWLWKAPVPEKIRILLWLTCPNSLPL 724
            F WT++ +G Y  +SGY WLL Q        + W W+W+   PEK++ L WL+C +++P 
Sbjct: 823  FVWTHNKNGVYITKSGYDWLLAQTDQVTIPLNSWSWIWQIAGPEKLKFLFWLSCHDAVPT 882

Query: 725  ASVLHHRNM 751
             S+LHHRN+
Sbjct: 883  LSMLHHRNI 891



 Score = 74.3 bits (181), Expect(2) = 2e-26
 Identities = 43/118 (36%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
 Frame = +1

Query: 778  SSRLWRSIGFESDVFFSNSRVIDWLRDGA-RTHSFASFVAGIWWQWRARNNHILANEEIP 954
            S  +W  +GF S +FF  + V DWL+    R H F  F+AG+WW WR RN   L+NE   
Sbjct: 917  SRPVWIRLGFTSRIFFDITSVHDWLKSAYFRPHRFV-FMAGVWWLWRHRNLMCLSNETWS 975

Query: 955  LYKLKIDVISLAN-LISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
              ++  ++ S+ + L +   +SS   +  R V W+S+     +LN+DGS  G P R G
Sbjct: 976  FVRISCNIYSMGDTLKTCFPSSSPEETSNRTVKWNSTDFTGFILNMDGSCSGTPIRCG 1033


>dbj|GAU50297.1| hypothetical protein TSUD_288310 [Trifolium subterraneum]
          Length = 545

 Score = 86.7 bits (213), Expect(2) = 3e-26
 Identities = 44/114 (38%), Positives = 59/114 (51%)
 Frame = +1

Query: 784  RLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYK 963
            R W++IGF    FF    + DWLR+     S   F+A +WW W ARN   + NE I  + 
Sbjct: 292  RFWKAIGFLGQTFFQGDNLNDWLRNSIDGPSSFLFMAAVWWIWCARNQLCMDNEAISYFT 351

Query: 964  LKIDVISLANLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
            L+ +  +LA L+          S    V W++      +LNVDGSSIGNPG SG
Sbjct: 352  LRTNTENLAQLLRMCFIKQNISSTATMVRWNAHGGIGMILNVDGSSIGNPGISG 405



 Score = 62.0 bits (149), Expect(2) = 3e-26
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
 Frame = +2

Query: 545 FSWTNHLDGNYSARSGYSWLLKQLYPSHSVTSDWQW--LWKAPVPEKIRILLWLTCPNSL 718
           ++W  +L+G Y+A+ GY WL +  + S + T D  W  +W  P PEKI+  +W    N+L
Sbjct: 195 YTWKGNLNGLYTAKEGYYWLNRFSF-SDTATDDISWNSVWHIPAPEKIKFFIWSALHNAL 253

Query: 719 PLASVLHHRNML 754
           P  S+L HR +L
Sbjct: 254 PTKSMLSHRGLL 265


>gb|PNX77884.1| ribonuclease H [Trifolium pratense]
          Length = 488

 Score = 80.5 bits (197), Expect(2) = 1e-25
 Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
 Frame = +2

Query: 545 FSWTNHLDGNYSARSGYSWLLKQLYPSH--SVTSDWQWLWKAPVPEKIRILLWLTCPNSL 718
           F W+N+ +G+Y+A+SGYSWLL Q   ++  S++  W W+WK  + EKI+ L WL C NS+
Sbjct: 180 FIWSNNKNGSYTAKSGYSWLLSQKDSANTPSISFSWIWIWKLHLLEKIKFLYWLACHNSV 239

Query: 719 PLASVLHHRNMLP 757
           P   ++HHR M P
Sbjct: 240 PTLLLIHHRKMNP 252



 Score = 66.2 bits (160), Expect(2) = 1e-25
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
 Frame = +1

Query: 778  SSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPL 957
            S  +W  +GF +  FF      +WL+ G+       F AG+WW WR RN   L NE   +
Sbjct: 276  SRPIWHHLGFITRDFFILMDAHEWLKFGSTGSQAFVFSAGVWWAWRHRNLXCLQNETWSI 335

Query: 958  YKLKIDVIS-LANLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
             +L  ++ S +A L S   + S   S    V W+++     +LNVDGS + +  R+G
Sbjct: 336  NRLIFNIHSMIATLTSCFSSRSTTASEEMHVKWNNNNYSGVILNVDGSCLKSLVRAG 392


>gb|PNY14401.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score = 83.6 bits (205), Expect(2) = 1e-25
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
 Frame = +2

Query: 545  FSWTNHLDGNYSARSGYSWLLKQ----LYPSHSVTSDWQWLWKAPVPEKIRILLWLTCPN 712
            F W+++ +G+Y+ +SGY WLL Q    + PSHS    W W+WK   PEKI+ L WL C +
Sbjct: 1009 FIWSHNKNGDYTTKSGYDWLLSQSEQVIIPSHS----WSWIWKIAGPEKIKFLFWLACHD 1064

Query: 713  SLPLASVLHHRNMLPS 760
            ++P  SVLHHRN++ S
Sbjct: 1065 AVPTLSVLHHRNIVSS 1080



 Score = 62.8 bits (151), Expect(2) = 1e-25
 Identities = 36/116 (31%), Positives = 54/116 (46%)
 Frame = +1

Query: 778  SSRLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPL 957
            S  +W  IG  S  F   S V DWL+    +   + F+AG+WW WR RN   L NE    
Sbjct: 1103 SRSIWFHIGLTSSSFHGISSVHDWLKHNYFSPHRSIFMAGVWWSWRHRNLMCLNNECWSA 1162

Query: 958  YKLKIDVISLANLISASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
             ++  ++ S+ + +++   +    +  R   W+       VLN DGS  G P R G
Sbjct: 1163 VRISYNIFSMVDNLNSCFPTLMDEANIRTTKWNCLDFTGFVLNTDGSCSGTPIRCG 1218


>gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1142

 Score = 74.3 bits (181), Expect(2) = 1e-24
 Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
 Frame = +2

Query: 437  IYSDIELPMQQIQHHIMVYVSFSLAAI---VNETVPGCFFSWTNHLDGNYSARSGYSWLL 607
            +Y+D       +  +I   V+  L  I   +N  V  C+ +W  +L+G YSAR GY WL 
Sbjct: 912  VYTDGNWNFNMLYTNIPTAVTDHLKMIPVCLNSQVADCY-TWKGNLNGIYSARDGYFWLN 970

Query: 608  KQLYPSHSVTS-DWQWLWKAPVPEKIRILLWLTCPNSLPLASVLHHRNML 754
            +  +  +   S  W WLW    PEK++  LW    NSLP   +L HRNML
Sbjct: 971  RNEFAGNDTDSISWTWLWNISAPEKLKFFLWTALHNSLPTREMLCHRNML 1020



 Score = 68.9 bits (167), Expect(2) = 1e-24
 Identities = 33/94 (35%), Positives = 50/94 (53%)
 Frame = +1

Query: 784  RLWRSIGFESDVFFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYK 963
            RLW SIGF    F+  + + +WLR G +  S   F+A +WW WRARN   LANE + L  
Sbjct: 1047 RLWHSIGFTDQSFYRENDLYNWLRIGIQGKSVFMFLAAVWWLWRARNLLCLANELVSLIT 1106

Query: 964  LKIDVISLANLISASGASSRAPSVPRWVSWHSSK 1065
            L++   + A+L+             +WV W++ +
Sbjct: 1107 LRMWTENYAHLLFRCFFKQATVPDTKWVRWNAHR 1140


>dbj|GAU50029.1| hypothetical protein TSUD_240220 [Trifolium subterraneum]
          Length = 357

 Score = 73.6 bits (179), Expect(2) = 9e-24
 Identities = 40/102 (39%), Positives = 52/102 (50%)
 Frame = +1

Query: 820  FFSNSRVIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLI 999
            FF    V  WLR    + +   F+AGIWW WRARN   L +E I    LK+ ++  A L+
Sbjct: 175  FFQGDDVYVWLRYDLSSSALLLFIAGIWWIWRARNALCLDSEMISFCSLKLHIMDYALLL 234

Query: 1000 SASGASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSG 1125
                 ++      R V W+       +LNVDGS IGNPG SG
Sbjct: 235  KNCYFNTHETPTTRLVKWNVLGGTGMILNVDGSIIGNPGISG 276



 Score = 66.6 bits (161), Expect(2) = 9e-24
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
 Frame = +2

Query: 503 SLAAIVNETVPGCFFSWTNHLDGNYSARSGYSWLLKQLYPSH--SVTSDWQWLWKAPVPE 676
           S+   +N +V  C+ +W  +L+G Y+AR GY+W+ +  + ++  SVTS W WLW    P+
Sbjct: 88  SITICLNPSVNDCY-TWKGNLNGIYTARDGYAWINRNSFSANTTSVTS-WSWLWNVSAPK 145

Query: 677 KIRILLWLTCPNSLPLASVLHHR 745
           KI+   W    NS P   +L HR
Sbjct: 146 KIKFFFWTMLHNSFPTKDMLAHR 168