BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00019219
         (1581 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]            247   e-149
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   251   e-144
gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]   231   e-142
gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]   243   e-141
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            241   e-141
dbj|GAU13723.1| hypothetical protein TSUD_348270 [Trifolium subt...   242   e-140
gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]            232   e-138
dbj|GAU15733.1| hypothetical protein TSUD_235460 [Trifolium subt...   228   e-138
gb|PNX71231.1| copia-type polyprotein, partial [Trifolium pratense]   241   e-138
dbj|GAU23220.1| hypothetical protein TSUD_172480 [Trifolium subt...   236   e-137
dbj|GAU16044.1| hypothetical protein TSUD_339150 [Trifolium subt...   239   e-137
gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]   234   e-136
dbj|GAU43961.1| hypothetical protein TSUD_283880 [Trifolium subt...   224   e-136
dbj|GAU24969.1| hypothetical protein TSUD_312040 [Trifolium subt...   233   e-136
dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subt...   237   e-135
dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subt...   236   e-134
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   233   e-134
dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subt...   234   e-133
dbj|GAU44758.1| hypothetical protein TSUD_246510 [Trifolium subt...   226   e-131
dbj|GAU51653.1| hypothetical protein TSUD_414750 [Trifolium subt...   242   e-129

>gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]
          Length = 1328

 Score =  247 bits (630), Expect(4) = e-149
 Identities = 113/189 (59%), Positives = 147/189 (77%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G  QVI+EVY +P LK+NLLSIGQLQQK L ++F +D CK++H+E+GLIM+  M+ NRMF
Sbjct: 348 GITQVISEVYYLPGLKNNLLSIGQLQQKNLTIVFKNDICKVFHEERGLIMSTPMSANRMF 407

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           V+ AT ++P+CLQ T++  + LWH+R+GHLSY  L  L +KEMVRGLP LK    +CS+C
Sbjct: 408 VIKATVLVPMCLQTTNEIDSQLWHKRYGHLSYKGLNTLVKKEMVRGLPALKEASDVCSDC 467

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
             GKQHRE + K+ NWRA+ KLEL HSDICGPI P SNS  +YFI+F DDF+RK WVY L
Sbjct: 468 LFGKQHREVIPKKVNWRATHKLELIHSDICGPINPASNSGNKYFITFTDDFTRKTWVYIL 527

Query: 546 TEKSAAFET 572
            +K++AFE+
Sbjct: 528 QDKASAFES 536



 Score =  246 bits (628), Expect(4) = e-149
 Identities = 112/169 (66%), Positives = 138/169 (81%)
 Frame = +2

Query: 551  KISCL*NLKRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQ 730
            K S   + KRF+ + EKES CQI  LRTDRGGEF S  F +YC E GI+RQLT AYTPQQ
Sbjct: 530  KASAFESFKRFKAVAEKESGCQILSLRTDRGGEFMSEAFNKYCTEQGIKRQLTTAYTPQQ 589

Query: 731  NGVAERRNRTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEV 910
            NGV+ER+NRT+MNMVR ++N+ K+ K+FWPE++KW+ Y+LNR PT+SVKD TPEEAWS +
Sbjct: 590  NGVSERKNRTIMNMVRCMLNDKKVPKKFWPESVKWAVYVLNRSPTLSVKDVTPEEAWSSM 649

Query: 911  KASVGHLRIFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            K SV H +IFGC+A++HVPD  RKKLDNKS KCI LG+SEESKAY+LY+
Sbjct: 650  KPSVKHFKIFGCLAFVHVPDAQRKKLDNKSTKCIHLGVSEESKAYKLYN 698



 Score = 67.8 bits (164), Expect(4) = e-149
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +1

Query: 1354 KNPIWMGDYVILRDQDSDSDLYDNEGLHNLLV-CEGGDPLTYEEAVKEDKWRRAMDNEIA 1530
            K P ++ DYV      +  +L + E LHNL V C   DP T++EAVK + WR+AMD EI 
Sbjct: 785  KRPGYLSDYV------TGQELEEEEQLHNLAVFCNNTDPTTFDEAVKHEVWRKAMDQEIE 838

Query: 1531 SIEKNNTWELVD 1566
             IE N+TWEL +
Sbjct: 839  CIESNDTWELTE 850



 Score = 41.2 bits (95), Expect(4) = e-149
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
 Frame = +3

Query: 1065 KKIMISKDVVFAENETWNW--VSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEA 1238
            +KI+IS+DVVF E++ WNW   S  Q KT+  D D+    + ++AD  VN +        
Sbjct: 702  RKIIISRDVVFDESKGWNWGEASETQQKTL-YDNDDEPAEIAEEADTDVNDD-------- 752

Query: 1239 QEHAVHNQIREESSGNATDVNQGPESADTEGEIQGRIKKK 1358
                V+N+  ++        ++  E  ++E E+  R+ K+
Sbjct: 753  ----VNNE--QDPQNLTVPDSESDEQYESEDELPPRVIKR 786


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  251 bits (642), Expect(4) = e-144
 Identities = 113/169 (66%), Positives = 139/169 (82%)
 Frame = +2

Query: 551  KISCL*NLKRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQ 730
            K S     K+F++++EKES CQI CLRTDRGGEF SN F E+C+ HGI+RQLT AYTPQQ
Sbjct: 523  KASAFDVFKKFKVLVEKESNCQIMCLRTDRGGEFTSNNFNEFCSNHGIKRQLTTAYTPQQ 582

Query: 731  NGVAERRNRTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEV 910
            NGV+ER+NRT++NM+RS+M    + K FWPEA+KWS Y+LNR PT++VKD TPEEAWS  
Sbjct: 583  NGVSERKNRTLLNMIRSMMAGRNVPKSFWPEALKWSTYVLNRSPTLAVKDITPEEAWSGS 642

Query: 911  KASVGHLRIFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            K +V H RIFGC+AY+H+PD NRKKLD+KSIKCI LG+SEESK Y+LYD
Sbjct: 643  KPTVHHFRIFGCLAYVHIPDFNRKKLDDKSIKCILLGLSEESKGYKLYD 691



 Score =  233 bits (595), Expect(4) = e-144
 Identities = 107/188 (56%), Positives = 139/188 (73%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G  QVI++VY IP LK+NLLSIGQLQQK L ++F  D CK+YH ++GLIM   M+ NRM+
Sbjct: 341 GITQVISDVYYIPGLKNNLLSIGQLQQKDLTIVFKQDFCKVYHPQRGLIMATKMSANRMY 400

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           ++ A  I+P+CL+        LWH R+GHLS+  L  L +K+MVRGLP+L+     C+ C
Sbjct: 401 IIYAPVIIPMCLKTVKMDNNELWHCRYGHLSFKGLNTLVKKDMVRGLPQLQETTENCTNC 460

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
             GKQHREA+ K SNWRAS+KLEL HSDICGPITP+SN   RYF++F DDFSRK W Y L
Sbjct: 461 MTGKQHREAIPKSSNWRASKKLELVHSDICGPITPQSNGGIRYFMTFTDDFSRKTWTYLL 520

Query: 546 TEKSAAFE 569
           ++K++AF+
Sbjct: 521 SDKASAFD 528



 Score = 58.9 bits (141), Expect(4) = e-144
 Identities = 28/72 (38%), Positives = 43/72 (59%)
 Frame = +1

Query: 1348 LKKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLVCEGGDPLTYEEAVKEDKWRRAMDNEI 1527
            +K+ P ++ DYV   + D ++    N  + +       DP  Y+EA+K   W++AMD EI
Sbjct: 777  VKRKPGYLNDYVTGEELDEETQHLQNLAMFSTKE----DPTNYDEAIKNGVWKKAMDQEI 832

Query: 1528 ASIEKNNTWELV 1563
             SIE+N+TWELV
Sbjct: 833  ESIERNDTWELV 844



 Score = 42.4 bits (98), Expect(4) = e-144
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVD-GNEA 1238
            +K++++SKDVVF E++ WNW                  + D ++ K ++   T D GN  
Sbjct: 694  NKRVIVSKDVVFEESKGWNW------------------NNDSKSQKQIDITSTTDEGNSN 735

Query: 1239 QEHAVHNQIREESSGNATDVNQGP------ESADTEGEIQGRIKKK 1358
            ++H +         G   + N  P      ES D+E E+  R+K+K
Sbjct: 736  EDHEIVPDDEVSDEGFEANNNSSPETDMTGESTDSE-ELTPRVKRK 780


>gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1209

 Score =  231 bits (589), Expect(4) = e-142
 Identities = 105/173 (60%), Positives = 135/173 (78%)
 Frame = +2

Query: 551  KISCL*NLKRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQ 730
            K S L   KRF+ ++E ES   I CLRTDRGGEF S+ F E+C+E+GI+RQLT AYTPQQ
Sbjct: 507  KSSALAVFKRFKALVENESNQSIKCLRTDRGGEFLSDTFNEFCSEYGIKRQLTTAYTPQQ 566

Query: 731  NGVAERRNRTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEV 910
            NGV+ER+NRT+MN+VRS++N   + K+FWPEA+ W+ Y++NR PT+SVK+ TPEEAW   
Sbjct: 567  NGVSERKNRTLMNVVRSMLNGRNVPKRFWPEAVVWATYVINRSPTLSVKNMTPEEAWRGT 626

Query: 911  KASVGHLRIFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYDKQQE 1069
            K SV   ++FGC+ Y+HVPD  RKKLD K IKC+ LG+SEESKAY+LYD  Q+
Sbjct: 627  KPSVSFFKVFGCLGYVHVPDVKRKKLDAKGIKCVLLGVSEESKAYKLYDPIQK 679



 Score =  228 bits (582), Expect(4) = e-142
 Identities = 104/187 (55%), Positives = 139/187 (74%)
 Frame = +3

Query: 3   KGRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRM 182
           +G+I VIT+VY +PNL++NLLSIGQLQQK L ++F  D CKI+H+E+GLI++  M  NRM
Sbjct: 324 QGKISVITDVYYLPNLRNNLLSIGQLQQKNLTIVFSKDTCKIFHEERGLIVSTPMTVNRM 383

Query: 183 FVVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSE 362
           ++++   I P CL+   DS   LWH R+GHLS+  L  L +K+MV GLP L+ +  +CS+
Sbjct: 384 YILLCPVITPSCLKTAHDSEGSLWHHRYGHLSFKGLHTLAKKDMVNGLPLLQESQELCSD 443

Query: 363 CQVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYF 542
           C + KQHR+++ K S+WRA+ KLEL HSDICGPITP SN   RYFI+F DD+SRK W Y 
Sbjct: 444 CVISKQHRDSIPKTSSWRATEKLELVHSDICGPITPTSNGGCRYFITFTDDYSRKTWTYP 503

Query: 543 LTEKSAA 563
           L EKS+A
Sbjct: 504 LKEKSSA 510



 Score = 73.6 bits (179), Expect(4) = e-142
 Identities = 39/78 (50%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
 Frame = +1

Query: 1351 KKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLV-CEGGDPLTYEEAVKEDKWRRAMDNEI 1527
            +K P W  DYV        +DL   E L NL   C   DP++Y+EAVK + W++AMD EI
Sbjct: 763  RKPPGWTRDYV--------TDLNSQEELQNLAAFCNNEDPISYDEAVKVEGWKQAMDQEI 814

Query: 1528 ASIEKNNTWELVDFQRMV 1581
             SIEKNNTWELVD  + V
Sbjct: 815  ESIEKNNTWELVDLPKGV 832



 Score = 45.8 bits (107), Expect(4) = e-142
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
 Frame = +3

Query: 1065 KKIMISKDVVFAENETWNWVSTEQGKTV----ACDLDEGEKSVD-DQADKGVNSEPTVDG 1229
            KKI+IS+DVVF EN+ WNW      K V    + DL+  E  V  D+    VN     +G
Sbjct: 679  KKIIISRDVVFDENQGWNWDEKNTSKVVEDYQSIDLEVTEPMVGADEPTSSVN-----NG 733

Query: 1230 NEAQEHAVHNQIREESSGNATDVNQGPESADTEG 1331
            N A E   H    + SS +  + +  P +    G
Sbjct: 734  NHAGEENDHEDHDDNSSTDEEETSLPPRTRKPPG 767


>gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 886

 Score =  243 bits (621), Expect(4) = e-141
 Identities = 109/165 (66%), Positives = 139/165 (84%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K+F+ ++EKES C I  LRTDRGGEF S+EF E+C+ +GI+RQLTAAYTPQQNGV+ER+N
Sbjct: 535  KKFKALVEKESNCNIQTLRTDRGGEFTSHEFNEFCSTNGIKRQLTAAYTPQQNGVSERKN 594

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT++NMVRS++N   + K+FWPEA+ W+ Y++NRCPT+SVKD TPEEAWSE+K SV + R
Sbjct: 595  RTLLNMVRSMLNGRNVPKRFWPEAVIWATYVMNRCPTLSVKDITPEEAWSEIKPSVHYFR 654

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYDKQQE 1069
            +FGC+AY HVPD  RKKLD K+ KC+ LGISEESKAY+LYD  Q+
Sbjct: 655  VFGCLAYAHVPDVLRKKLDPKASKCVHLGISEESKAYKLYDPIQK 699



 Score =  234 bits (596), Expect(4) = e-141
 Identities = 108/188 (57%), Positives = 140/188 (74%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G +QVIT+VY +P LK+NLLSIGQLQQK + +IF+ D+CK++H + GLI+T  M+ NRMF
Sbjct: 345 GMVQVITDVYFLPGLKNNLLSIGQLQQKNVTIIFEKDQCKVFHDKWGLIITSDMSANRMF 404

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           ++ A+ I P+CL+ + DS + LWH R+ HLS+  L  L +K+MV+GLP L+  D +CS+C
Sbjct: 405 IIQASIISPMCLKISKDSQSHLWHCRYAHLSFKGLNTLVKKDMVKGLPTLQETDEVCSDC 464

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
             GKQ REA+ K +NWRAS KL+L HSDICGPI P SN   RYFI+F DDFSRK W Y L
Sbjct: 465 ATGKQSREAIPKSNNWRASEKLQLVHSDICGPINPASNGGSRYFITFTDDFSRKTWTYPL 524

Query: 546 TEKSAAFE 569
             KS AFE
Sbjct: 525 AAKSNAFE 532



 Score = 67.0 bits (162), Expect(4) = e-141
 Identities = 36/79 (45%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +1

Query: 1333 KFRAELKKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLVCE-GGDPLTYEEAVKEDKWRR 1509
            K    ++K P W  DYV   +   +SDL       NL +     DP+TY+EA K   WR 
Sbjct: 775  KLGPRIRKPPAWTQDYVTELENAENSDL------QNLAIFSVQSDPITYDEAAKHKVWRD 828

Query: 1510 AMDNEIASIEKNNTWELVD 1566
            AMD EI SIEKN+TWEL+D
Sbjct: 829  AMDQEILSIEKNDTWELLD 847



 Score = 30.8 bits (68), Expect(4) = e-141
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = +3

Query: 1065 KKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEAQE 1244
            KKI+IS+DV F E++ W W    Q         + +  +   +D+   +E   + + +Q+
Sbjct: 699  KKIIISRDVKFDESKGWIWDKKNQ-------KSQSQIEIAHSSDEENIAEDNTNDSGSQQ 751

Query: 1245 HAVHNQIREESSGNATD 1295
              + ++  E+S G   D
Sbjct: 752  GEIADEQVEDSDGPDED 768


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  241 bits (615), Expect(4) = e-141
 Identities = 109/173 (63%), Positives = 137/173 (79%)
 Frame = +2

Query: 539  FSNRKISCL*NLKRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAY 718
            F + K       K F+  +EKES   I+ LRTDRGGEFNSNEF E+C   GI RQLTAAY
Sbjct: 530  FLHEKSEAFAMFKNFKAYVEKESGAYITSLRTDRGGEFNSNEFEEFCKVQGISRQLTAAY 589

Query: 719  TPQQNGVAERRNRTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEA 898
            TPQQNGVAER+NRT+MNMVRS++ E K+ K FWPEA+KWS +ILNRCPT++V++KTPEEA
Sbjct: 590  TPQQNGVAERKNRTIMNMVRSMLVEKKVPKMFWPEAVKWSVHILNRCPTLAVQNKTPEEA 649

Query: 899  WSEVKASVGHLRIFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            WS +K ++ + R+FGCVA+ H+PD  R KLD+KS KC+ LG+S+ESKAY+LYD
Sbjct: 650  WSGIKPTINYFRVFGCVAHAHIPDQKRSKLDDKSKKCVLLGVSDESKAYKLYD 702



 Score =  227 bits (578), Expect(4) = e-141
 Identities = 111/189 (58%), Positives = 138/189 (73%), Gaps = 2/189 (1%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G  QVI+ VY IP LK+NLLSIGQLQ K L ++    KC IYH  KGLIM  IM+ N+MF
Sbjct: 350 GFTQVISNVYYIPELKNNLLSIGQLQDKGLSILIQHGKCMIYHPTKGLIMETIMSGNKMF 409

Query: 186 VVMAT--PILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICS 359
            ++A+  P    C Q  S++ + LWH RFGHLSY  L+ L  K+MV GLP ++    +C+
Sbjct: 410 CLVASMMPNESTCFQNVSENESYLWHCRFGHLSYQGLRTLFYKKMVNGLPSIQIPKKLCT 469

Query: 360 ECQVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVY 539
           EC +GKQHR++MSK+S WRAS KL+L H+DICGPI PESNS KRYF+SFIDDF+RK W+Y
Sbjct: 470 ECLIGKQHRDSMSKKSLWRASNKLQLVHADICGPIKPESNSNKRYFLSFIDDFTRKTWIY 529

Query: 540 FLTEKSAAF 566
           FL EKS AF
Sbjct: 530 FLHEKSEAF 538



 Score = 59.3 bits (142), Expect(4) = e-141
 Identities = 28/58 (48%), Positives = 38/58 (65%)
 Frame = +1

Query: 1387 LRDQDSDSDLYDNEGLHNLLVCEGGDPLTYEEAVKEDKWRRAMDNEIASIEKNNTWEL 1560
            L D ++   L D + L+ +++    DPL++EEA K +KWR AM  EI SIEKN TWEL
Sbjct: 810  LADYETGEGLSDEDNLNAMMMLTEDDPLSFEEARKSNKWRDAMKAEIESIEKNKTWEL 867



 Score = 47.4 bits (111), Expect(4) = e-141
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEAQ 1241
            SKKI+ISKDV+F E+  WNW + +  + V  D+ E +   ++  ++ +     V  N  +
Sbjct: 705  SKKIIISKDVIFEEDVCWNWDNNKDERRV--DVLEWKNDYENDIEEAIEGNEEVGNNGNE 762

Query: 1242 EHAVHNQIREESSGNATDVNQGPESADTEGE---------IQGRIKK 1355
            E   HN   E   GN  D     ES  +  E         ++GR+++
Sbjct: 763  EE--HNNGNE--GGNNDDTTNSIESNSSSSESHEDESPNMVEGRVRR 805


>dbj|GAU13723.1| hypothetical protein TSUD_348270 [Trifolium subterraneum]
          Length = 1117

 Score =  242 bits (618), Expect(4) = e-140
 Identities = 109/173 (63%), Positives = 138/173 (79%)
 Frame = +2

Query: 551  KISCL*NLKRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQ 730
            K S     K+F+ +IEKES C I CLRTDRGGEF S++F E+C+EHGI+RQLTAAYTPQQ
Sbjct: 526  KASAFDCFKKFKALIEKESDCTIKCLRTDRGGEFTSSKFNEFCSEHGIKRQLTAAYTPQQ 585

Query: 731  NGVAERRNRTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEV 910
            NGV+ER+N+T++NMVRS++    + K FWPEA+ W+ Y++NR PT+SVKD TPEEAWS  
Sbjct: 586  NGVSERKNKTLLNMVRSMLVGKCVPKLFWPEAVVWATYVINRSPTLSVKDVTPEEAWSGT 645

Query: 911  KASVGHLRIFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYDKQQE 1069
            K SV H +IFGC+ Y+HVP+  RKKLD K IKC+ LG+SEESKAY+LYD  Q+
Sbjct: 646  KPSVSHFKIFGCIGYVHVPEAQRKKLDPKGIKCVHLGVSEESKAYKLYDPMQK 698



 Score =  223 bits (567), Expect(4) = e-140
 Identities = 99/188 (52%), Positives = 139/188 (73%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G++ VI++VY +P+LK+NLLSIGQLQQK L ++F  D CKI+H+ KGLI+T  M  NRM+
Sbjct: 344 GQVTVISDVYYLPDLKNNLLSIGQLQQKNLTIVFSKDVCKIFHEGKGLIVTTQMTVNRMY 403

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           +++A  +LP C + T+     LWH R+GHLS+  L  L ++EMV+GLP +K+N ++CS+C
Sbjct: 404 IILAPVMLPTCFKVTNKDEGHLWHCRYGHLSFKGLNTLAKREMVKGLPMVKDNQTVCSDC 463

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
            V KQHR+   K ++WRA+ KLEL HSDICGPI P SN   +YFI+F DD +RK W Y L
Sbjct: 464 VVSKQHRDTFPKNASWRATSKLELVHSDICGPINPTSNGGSKYFITFTDDVTRKTWTYPL 523

Query: 546 TEKSAAFE 569
            +K++AF+
Sbjct: 524 KDKASAFD 531



 Score = 66.2 bits (160), Expect(4) = e-140
 Identities = 38/74 (51%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +1

Query: 1360 PIWMGDYVI-LRDQDSDSDLYDNEGLHNLLV-CEGGDPLTYEEAVKEDKWRRAMDNEIAS 1533
            P W+ DYV  L D D D        + NL V C+  DP TYEEA K   WR+AMD EI S
Sbjct: 784  PGWVHDYVTNLEDSDIDQ-------MQNLAVFCDNSDPHTYEEASKMVVWRKAMDQEIES 836

Query: 1534 IEKNNTWELVDFQR 1575
            IE+N+TWELV   R
Sbjct: 837  IERNDTWELVTLPR 850



 Score = 42.0 bits (97), Expect(4) = e-140
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
 Frame = +3

Query: 1065 KKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQA------DKGVNSEPTVD 1226
            KKI+IS+DV+F EN  WNW   E+ K     L+E   S  +Q       D+G+N    ++
Sbjct: 698  KKIIISRDVIFDENSCWNW--DEKPKAQTSQLEEETISEYEQETTPEIDDQGIN----IE 751

Query: 1227 GNEAQEHAVHNQIREESSGNAT 1292
              +  E    +   +E +  AT
Sbjct: 752  NEQGHEETEEDNDNDEGNSGAT 773


>gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]
          Length = 1324

 Score =  232 bits (591), Expect(4) = e-138
 Identities = 104/161 (64%), Positives = 132/161 (81%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K F+ ++E ES  +I CLRTDRGGEF S  F  +C+E+GI+RQLT AYTPQQNGV+ER+N
Sbjct: 538  KTFKALVENESGYKIVCLRTDRGGEFTSEIFNNFCSENGIKRQLTTAYTPQQNGVSERKN 597

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT++NMVRS++    + K+FWPEA+KW+ Y+LNR PT+SVKD TPEEAWS +K SV H +
Sbjct: 598  RTLLNMVRSMLAGRNVPKKFWPEAVKWATYVLNRSPTLSVKDSTPEEAWSGLKPSVHHFK 657

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            IFGC+AY+HVPD  R KLD KS+KC+ LG+SEESKAY+LYD
Sbjct: 658  IFGCLAYVHVPDAKRTKLDAKSLKCVHLGVSEESKAYKLYD 698



 Score =  229 bits (583), Expect(4) = e-138
 Identities = 103/187 (55%), Positives = 140/187 (74%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G  QVIT VY +P LK+NLLSIGQLQQK + ++F DD CK++H+++GLIMT  M  NRM+
Sbjct: 348 GITQVITNVYFLPGLKNNLLSIGQLQQKDVTIVFKDDLCKVFHEQRGLIMTTRMTANRMY 407

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           V+ A  ILP+CL+      + LWH R+GHLS+  L  L ++ MV+GLP+L+  ++ CS+C
Sbjct: 408 VISAPVILPMCLKTEKQVNSHLWHCRYGHLSFKGLNTLVKRNMVKGLPQLQEIETNCSDC 467

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
            +GKQHR+++ KQ+NWRA++KLEL HSDICGPI P SN   RYF++  DD+SRK W Y +
Sbjct: 468 MIGKQHRDSIPKQANWRATKKLELVHSDICGPINPTSNGGNRYFMTLTDDYSRKTWTYVM 527

Query: 546 TEKSAAF 566
           +EKS AF
Sbjct: 528 SEKSNAF 534



 Score = 61.2 bits (147), Expect(4) = e-138
 Identities = 34/72 (47%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
 Frame = +1

Query: 1351 KKNPIWMGDYVI-LRDQDSDSDLYDNEGLHNLLVCE-GGDPLTYEEAVKEDKWRRAMDNE 1524
            KK P ++ DYV  L D++        E ++NL V    GDP TY+EA K++ WR+AMD E
Sbjct: 782  KKKPGYLNDYVTGLTDEEQ-------EQMNNLAVFSTNGDPTTYDEAHKQEVWRKAMDQE 834

Query: 1525 IASIEKNNTWEL 1560
            I SIE N TW+L
Sbjct: 835  IESIENNKTWKL 846



 Score = 44.3 bits (103), Expect(4) = e-138
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNWVSTEQGKTVAC---DLDEGEKSVDDQADKGVNSEPTVDGN 1232
            +KKI++S+DVVF E   WNW   ++    +    DL   E  ++++A  GVN+     GN
Sbjct: 701  NKKIIVSRDVVFEEGTEWNWNDKKKAAASSSNNNDLISDETDIEEEAKNGVNT-----GN 755

Query: 1233 EAQEHAVHNQIREESSGNATDVNQGPESADTEGEIQGRIKKK 1358
                           S +  D  Q     +TE E+  R KKK
Sbjct: 756  -------------NESSSEYDSEQEGNDYETEEELPPRPKKK 784


>dbj|GAU15733.1| hypothetical protein TSUD_235460 [Trifolium subterraneum]
          Length = 1067

 Score =  228 bits (580), Expect(4) = e-138
 Identities = 105/189 (55%), Positives = 135/189 (71%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G + VI+ VY +P L  NLLS+GQLQQK + VIF +D C+ YH EKGLI +  M+ NRM+
Sbjct: 341 GSVHVISNVYYLPGLNTNLLSVGQLQQKSVTVIFKNDTCRAYHDEKGLIFSTQMSANRMY 400

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
            + A  ++P+CLQ +++  T LWH R+GHLS N LKLL  K+MV+GLP ++     C +C
Sbjct: 401 TLTAPVMIPMCLQTSNEDQTQLWHNRYGHLSVNGLKLLSSKDMVKGLPAIREMSERCIDC 460

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
            +GKQ RE + KQ+ WRA+ KL+L HSDICGPI P SN  KRYF++  DDFSRK WVY L
Sbjct: 461 LIGKQQREVIPKQAKWRANTKLQLIHSDICGPINPCSNGGKRYFLTLTDDFSRKTWVYVL 520

Query: 546 TEKSAAFET 572
            EKS AFET
Sbjct: 521 KEKSEAFET 529



 Score =  227 bits (579), Expect(4) = e-138
 Identities = 104/161 (64%), Positives = 129/161 (80%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K F+ ++E ES C I  LRTDRGGEF SN F E+C   GI+RQLT AYTPQQNGV+ER+N
Sbjct: 531  KNFKALVEIESGCVIQMLRTDRGGEFTSNVFNEFCKTKGIKRQLTTAYTPQQNGVSERKN 590

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT++N+VRS++    + K FWPEA+KW+ Y++NR PT SV+D TPEEAWS VK SV H R
Sbjct: 591  RTLLNIVRSVLACRNVPKSFWPEALKWAAYVMNRSPTSSVRDMTPEEAWSGVKPSVKHFR 650

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
             F C+AY HVPD++RKKLDNKSIKC+ LGIS+ESKAY+LY+
Sbjct: 651  TFDCLAYAHVPDSHRKKLDNKSIKCVLLGISDESKAYKLYN 691



 Score = 68.9 bits (167), Expect(4) = e-138
 Identities = 34/76 (44%), Positives = 46/76 (60%)
 Frame = +1

Query: 1348 LKKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLVCEGGDPLTYEEAVKEDKWRRAMDNEI 1527
            ++K P  + D+VI ++ + +  L      HNL V    DP TYEEA K  KW++AMD EI
Sbjct: 785  IRKTPSHLRDFVIGKEAEEEQQL------HNLAVYSSSDPETYEEASKSQKWKQAMDVEI 838

Query: 1528 ASIEKNNTWELVDFQR 1575
             +IE NNTWEL D  +
Sbjct: 839  EAIEANNTWELSDLPK 854



 Score = 42.4 bits (98), Expect(4) = e-138
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
 Frame = +3

Query: 1065 KKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQA-------DKGVNSEPTV 1223
            KKI+IS+DVVF E + W+W + E+ K +  D +  + S+ + A       ++G  S+ + 
Sbjct: 695  KKIVISRDVVFDETKGWDWENKEKIKVINTDYNLLDDSITEAATPVTPTIEEGAISDDSS 754

Query: 1224 DGNEAQEHAVHNQIREESSGNATDVNQGPESADTEGEIQ 1340
               EAQ      +I    + +  D   GP    T   ++
Sbjct: 755  TDAEAQGATSSEEIIVSDTSSDDDAVLGPRIRKTPSHLR 793


>gb|PNX71231.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1017

 Score =  241 bits (615), Expect(4) = e-138
 Identities = 110/161 (68%), Positives = 131/161 (81%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K F+ ++EKE+   I CLRTDRGGEF SNEF EYC  +GI+RQLTAAYTPQQNGVAER+N
Sbjct: 237  KLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTPQQNGVAERKN 296

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RTVMNMVRSL+ E  + ++FW EA+ W+FY+LNRCPT SVK+ TP EAW  VK SVGHLR
Sbjct: 297  RTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEAWCGVKPSVGHLR 356

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            +FGC+AY HVPD  R KL++KS  C+  G+SEESKAYRLYD
Sbjct: 357  VFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYD 397



 Score =  215 bits (547), Expect(4) = e-138
 Identities = 104/196 (53%), Positives = 132/196 (67%), Gaps = 6/196 (3%)
 Frame = +3

Query: 3   KGRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRM 182
           KG   ++ +VY +P LK+NLLS+GQLQ++ L V+   ++C+IYH  KGL+    M  NRM
Sbjct: 40  KGVNYLVRDVYYVPGLKNNLLSVGQLQERGLAVLMQSNECRIYHHTKGLVFQTNMTANRM 99

Query: 183 FVVMATPIL------PVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNN 344
           FV++++           C Q T++ V  LWHRRFGHLSY  LK LQ K MVRGLP     
Sbjct: 100 FVLLSSTQSIKKENKEECFQVTTEYVAHLWHRRFGHLSYKGLKTLQTKGMVRGLPCFSEG 159

Query: 345 DSICSECQVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSR 524
           + +C  C  GKQHR+ +S++S WRAS KLEL H+DICGPI+P S   KRYFI FIDD+SR
Sbjct: 160 EIVCKNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSR 219

Query: 525 KGWVYFLTEKSAAFET 572
           K WVYFL  KS AF T
Sbjct: 220 KAWVYFLAYKSDAFTT 235



 Score = 59.3 bits (142), Expect(4) = e-138
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
 Frame = +1

Query: 1351 KKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLV---CEGGDPLTYEEAVKEDKWRRAMDN 1521
            ++ P WM DYV      S   L D E    L++       DP +++EAVKE KWR AMD 
Sbjct: 490  RRAPGWMNDYV------SGEGLSDEEVQTQLVLFAHAVHSDPTSFDEAVKEVKWRAAMDA 543

Query: 1522 EIASIEKNNTWELVDFQR 1575
            E+ SIEKN TW+L +  +
Sbjct: 544  EMKSIEKNGTWDLTELPK 561



 Score = 50.4 bits (119), Expect(4) = e-138
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNWVS-TEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEA 1238
            SK+I+IS+DVVF E+  WNW   +E+  T   + ++ +    +++  G   E   D NE 
Sbjct: 400  SKRIIISRDVVFEEDGQWNWEKRSEEDNTFDTEWEDEKSEEREESTDGNEEENATDSNEE 459

Query: 1239 QEHAVHNQIREESSGNATDVNQGPESADTEGEIQGR 1346
            +  A  N+  EE   NATD N+   +A    E + R
Sbjct: 460  ENAAEGNE--EE---NATDGNEDENAASPVSEHRNR 490


>dbj|GAU23220.1| hypothetical protein TSUD_172480 [Trifolium subterraneum]
          Length = 1323

 Score =  236 bits (603), Expect(4) = e-137
 Identities = 106/173 (61%), Positives = 137/173 (79%)
 Frame = +2

Query: 551  KISCL*NLKRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQ 730
            K S     ++F+ ++EKES C I CLRTDRGGEF S++F E+C+EHGI+RQLTAAYTPQQ
Sbjct: 530  KASAFDCFRKFKALVEKESDCTIKCLRTDRGGEFTSSKFNEFCSEHGIKRQLTAAYTPQQ 589

Query: 731  NGVAERRNRTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEV 910
            NGV+ER+N T++NMVRS++    + K FWPEA+ W+ Y++NR PT+SVK+ TPEEAWS  
Sbjct: 590  NGVSERKNITLLNMVRSMLVGKHVPKLFWPEAVVWATYVINRSPTLSVKNVTPEEAWSGT 649

Query: 911  KASVGHLRIFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYDKQQE 1069
            K SV H +IFGC+ Y+HVP+  RKKLD K IKC+ LG+SEESKAY+LYD  Q+
Sbjct: 650  KPSVSHFKIFGCIGYVHVPEAQRKKLDPKGIKCVHLGVSEESKAYKLYDPIQK 702



 Score =  219 bits (557), Expect(4) = e-137
 Identities = 97/188 (51%), Positives = 139/188 (73%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G++ VI++VY +P+LK+NLLSIGQLQQK L ++F  D CKI+H+ KGLI+T  M  NRM+
Sbjct: 348 GQVTVISDVYYLPDLKNNLLSIGQLQQKNLTIVFSKDVCKIFHEGKGLIVTTQMTVNRMY 407

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           +++A  +LP C + ++     LWH R+GHLS+  L  L ++EMV+GLP +K++ ++CS+C
Sbjct: 408 IILAPVMLPACFKVSNQDEGHLWHCRYGHLSFKGLNTLAKREMVKGLPMVKDDQTVCSDC 467

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
            V KQHR+   K ++WRA+ KLEL HSDICGPI P SN   +YFI+F DD +RK W Y L
Sbjct: 468 VVSKQHRDTFPKIASWRATSKLELVHSDICGPINPTSNGGSKYFITFTDDLTRKTWTYPL 527

Query: 546 TEKSAAFE 569
            +K++AF+
Sbjct: 528 KDKASAFD 535



 Score = 67.0 bits (162), Expect(4) = e-137
 Identities = 38/74 (51%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = +1

Query: 1360 PIWMGDYVI-LRDQDSDSDLYDNEGLHNLLV-CEGGDPLTYEEAVKEDKWRRAMDNEIAS 1533
            P W+ DYV  L D D D        + NL V C+  DP TYEEA K   WR+AMD EI S
Sbjct: 788  PGWVHDYVTNLEDSDIDQ-------MQNLAVFCDNSDPHTYEEASKMTVWRKAMDQEIES 840

Query: 1534 IEKNNTWELVDFQR 1575
            IE+N+TWELV   R
Sbjct: 841  IERNDTWELVTLPR 854



 Score = 39.7 bits (91), Expect(4) = e-137
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = +3

Query: 1065 KKIMISKDVVFAENETWNWVSTEQGKTVACDLDE------GEKSVDDQADKGVNSEPTVD 1226
            KKI+IS+DV+  EN  WNW   E+ K  +  L+E       ++S  +  D+G+N    ++
Sbjct: 702  KKIIISRDVISDENSCWNW--DEKHKAQSSQLEEETISEYEQESTPEIDDQGIN----IE 755

Query: 1227 GNEAQEHAVHNQIREESSGNAT 1292
              +  E    +   +E +  AT
Sbjct: 756  NEQGHEETEEDNDSDEGNNGAT 777


>dbj|GAU16044.1| hypothetical protein TSUD_339150 [Trifolium subterraneum]
          Length = 1284

 Score =  239 bits (609), Expect(4) = e-137
 Identities = 107/165 (64%), Positives = 137/165 (83%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            KRF+ ++EKES   I CLRTDRGGEF SN F E+C+EHGI+RQLTAAYTPQQNGV+ER+N
Sbjct: 514  KRFKALVEKESSNFIKCLRTDRGGEFTSNSFNEFCSEHGIKRQLTAAYTPQQNGVSERKN 573

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT+MNMVRS+++   + K+FWPEA+ W+ ++LNR PT+SVK+ TPEEAWS  K SV + R
Sbjct: 574  RTLMNMVRSMLSGRCVPKRFWPEAVVWATHVLNRSPTLSVKNMTPEEAWSGTKPSVAYFR 633

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYDKQQE 1069
            +FGC+ Y H+PD +RKKLD KSIKC+ LG+SEESKAY++YD  Q+
Sbjct: 634  VFGCLGYAHIPDAHRKKLDPKSIKCVHLGVSEESKAYKVYDPIQK 678



 Score =  221 bits (564), Expect(4) = e-137
 Identities = 103/189 (54%), Positives = 138/189 (73%)
 Frame = +3

Query: 3   KGRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRM 182
           +GRI VIT VY +PNL++NLLSIGQLQ+K L V+F  + CKIYH++KGLI++  M  NRM
Sbjct: 323 QGRISVITNVYYLPNLRNNLLSIGQLQEKNLTVVFSKNDCKIYHEDKGLIVSTPMTVNRM 382

Query: 183 FVVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSE 362
           +V++A  +LP CL+ T +S   LWH R+GHLS+  L  L ++EMV+GLP L+    +CS+
Sbjct: 383 YVLLAPVMLPNCLKITHESEEHLWHSRYGHLSFKGLHALAKREMVKGLPLLQETQELCSD 442

Query: 363 CQVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYF 542
           C   K  R+++ K S+WRA+  L+L HSDICGP+ P SN   RYFI+F DD+SRK W Y 
Sbjct: 443 CITSKHQRDSIPKSSSWRATTNLQLVHSDICGPLNPPSNGGCRYFITFTDDYSRKTWTYP 502

Query: 543 LTEKSAAFE 569
           L EKS+AFE
Sbjct: 503 LKEKSSAFE 511



 Score = 65.5 bits (158), Expect(4) = e-137
 Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
 Frame = +1

Query: 1351 KKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLV-CEGGDPLTYEEAVKEDKWRRAMDNEI 1527
            ++ P W+ DYV   ++  +++   N  L+NL V C+  DP  YE+AVK   WR AMD EI
Sbjct: 766  RRPPGWVRDYVTNIEELDEAEQAAN--LNNLAVFCDNEDPTCYEDAVKLVVWRHAMDQEI 823

Query: 1528 ASIEKNNTWELVDFQR 1575
             SIE+N TWELVD  +
Sbjct: 824  ESIERNKTWELVDLPK 839



 Score = 36.2 bits (82), Expect(4) = e-137
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +3

Query: 1065 KKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQ---ADKGVNSEPTVDGNE 1235
            KKI+IS+DVVF E + W W    +   +   LD    S D+     D+        + N 
Sbjct: 678  KKIIISRDVVFNETQGWEWGEKNKEHDIPPVLDIDASSTDEPEILIDETEGQADIENENS 737

Query: 1236 AQEHAVHNQIREES 1277
            A E   H+   E S
Sbjct: 738  AHEEPPHHSETEPS 751


>gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 803

 Score =  234 bits (596), Expect(4) = e-136
 Identities = 106/161 (65%), Positives = 133/161 (82%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K+F+ ++E ES C I CLRTDRGGEF S EF  +C+  GI+RQLTAAYTPQQNGVAER+N
Sbjct: 296  KKFKSLVENESNCLIKCLRTDRGGEFTSLEFNNFCSSQGIKRQLTAAYTPQQNGVAERKN 355

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT++NMVRS+++   + K FWPEA+KW+ Y++NR PT +VKD TPEEA+S VK SV H R
Sbjct: 356  RTILNMVRSMISCRGVPKCFWPEAVKWATYVMNRSPTFAVKDITPEEAYSGVKPSVHHFR 415

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            IFGC+A++H+PD +RKKLD KS KCI LG+SEESKAY+LYD
Sbjct: 416  IFGCLAHVHIPDAHRKKLDGKSTKCIHLGVSEESKAYKLYD 456



 Score =  232 bits (591), Expect(4) = e-136
 Identities = 106/186 (56%), Positives = 140/186 (75%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           GRI +IT+VY +P L +NLLSIGQLQQK L ++F ++ C+++H++KGLI++  M  NRM+
Sbjct: 106 GRIIIITDVYYLPGLGNNLLSIGQLQQKGLTIVFKNNVCQLFHEDKGLILSTEMTMNRMY 165

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           +V AT I+P CLQ T    T LWH+R+ HLS   L++L +K MV+GLPEL++ +  C++C
Sbjct: 166 IVRATVIIPNCLQVTKAEETELWHKRYAHLSIKGLRVLNKKHMVKGLPELRDTEEKCTDC 225

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
             GKQHRE M KQ+NWRAS  LEL HSDICGPITP+SN   RYF++F DDFSRK W Y +
Sbjct: 226 LSGKQHRENMPKQANWRASEILELIHSDICGPITPKSNGGNRYFLTFTDDFSRKTWTYII 285

Query: 546 TEKSAA 563
            EKS A
Sbjct: 286 QEKSCA 291



 Score = 56.2 bits (134), Expect(4) = e-136
 Identities = 33/73 (45%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1351 KKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLVCEGG---DPLTYEEAVKEDKWRRAMDN 1521
            ++ P ++ DYV   +   D D      L NL +   G   DP TYEEAVK   WR AM+ 
Sbjct: 543  RRPPGYLRDYVTGNELPDDDDQ-----LQNLAIAMFGTSDDPATYEEAVKSKVWRDAMEA 597

Query: 1522 EIASIEKNNTWEL 1560
            EI SIE N TWEL
Sbjct: 598  EIKSIESNGTWEL 610



 Score = 39.3 bits (90), Expect(4) = e-136
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNW--VSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNE 1235
            ++KI+IS+DV+F EN+ WNW   ST        D + G +  ++  D  +N+E   D  E
Sbjct: 459  ARKIIISRDVIFEENKGWNWNKASTSNSGEQLSDNEAGIEVENNDTD-ALNNENNGDTIE 517

Query: 1236 AQEHAVHNQIREESSGNATDVNQGP 1310
             +  A  + +  E S     ++  P
Sbjct: 518  NENEAGSSDMDLEDSEEEQAISPRP 542


>dbj|GAU43961.1| hypothetical protein TSUD_283880 [Trifolium subterraneum]
          Length = 1273

 Score =  224 bits (572), Expect(4) = e-136
 Identities = 105/194 (54%), Positives = 137/194 (70%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G I VI+ VY +P L  NLLS+GQLQQK + +IF +D C+ YH EKGLI +  M+ N M+
Sbjct: 341 GSIHVISNVYYLPGLNTNLLSVGQLQQKNVTIIFKNDACRAYHDEKGLIFSTQMSANIMY 400

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           ++ A  I+P+CLQ + +  T LWH R+GHLS   LK+L  K+MV+GLP L   +  C++C
Sbjct: 401 ILAAPVIVPMCLQTSIEDKTQLWHNRYGHLSVKGLKILNSKDMVKGLPALGEMNERCTDC 460

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
            +GKQ RE + KQ+ WRA+ KL+L HSDICGPI P SN  KRYF++  DDFSRK WVY L
Sbjct: 461 LIGKQQREVIPKQAKWRATTKLQLIHSDICGPINPCSNGGKRYFLTLTDDFSRKTWVYIL 520

Query: 546 TEKSAAFET*RDLE 587
            EKS AFET R+ +
Sbjct: 521 KEKSEAFETFRNFK 534



 Score =  221 bits (564), Expect(4) = e-136
 Identities = 100/161 (62%), Positives = 127/161 (78%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            + F+ M+E +S C I  LRTDRGGEF SN F E+C   GI+RQLT AYTPQQNGV+ER+N
Sbjct: 531  RNFKAMVELKSGCVIQMLRTDRGGEFTSNAFNEFCKSKGIKRQLTTAYTPQQNGVSERKN 590

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT++N+VRS++    + K FWPEA+KW+ Y++NR PT SV+D TPEEAWS VK SV H R
Sbjct: 591  RTLLNIVRSMLACRNVPKSFWPEALKWAAYVMNRSPTSSVRDMTPEEAWSGVKPSVKHFR 650

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
             FGC+AY HVP + R+KLDN+SI C+ LGIS+ESKAY+LY+
Sbjct: 651  TFGCLAYAHVPYSQRRKLDNRSITCVLLGISDESKAYKLYN 691



 Score = 70.5 bits (171), Expect(4) = e-136
 Identities = 35/76 (46%), Positives = 47/76 (61%)
 Frame = +1

Query: 1348 LKKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLVCEGGDPLTYEEAVKEDKWRRAMDNEI 1527
            +KK P  + D+VI ++ + +  L      HNL V   GDP TYEEA K  KW++AMD EI
Sbjct: 787  IKKTPSHLRDFVIGKEAEEEQQL------HNLDVYSNGDPETYEEASKSHKWKQAMDTEI 840

Query: 1528 ASIEKNNTWELVDFQR 1575
             +I+ NNTWEL D  +
Sbjct: 841  EAIKANNTWELSDLPK 856



 Score = 43.1 bits (100), Expect(4) = e-136
 Identities = 27/97 (27%), Positives = 51/97 (52%)
 Frame = +3

Query: 1065 KKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEAQE 1244
            KKI+IS+DVVF E + W+W + E+ K ++ D D  + SV + A     +    + +   +
Sbjct: 695  KKIVISRDVVFDEAKGWDWENKEKLKDISTDYDFLDDSVIEPAANETVTPTNEETSTRDD 754

Query: 1245 HAVHNQIREESSGNATDVNQGPESADTEGEIQGRIKK 1355
             + + +++ ++S     V+     +D   E+  RIKK
Sbjct: 755  SSTYVEVQRDASSEEIIVSD--TRSDDGIELGPRIKK 789


>dbj|GAU24969.1| hypothetical protein TSUD_312040 [Trifolium subterraneum]
          Length = 1326

 Score =  233 bits (594), Expect(4) = e-136
 Identities = 106/161 (65%), Positives = 131/161 (81%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K F+ M+E ES C I  LRTDRGGEF S+ F E+C   GI+RQLT AYTPQQNGV+ER+N
Sbjct: 534  KIFKAMVELESGCMIQALRTDRGGEFTSSVFNEFCNSKGIKRQLTTAYTPQQNGVSERKN 593

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT++NM+RS++    + K FWPEA+KW+ YILNR PT+SVK+ TPEEAWS  K SV H R
Sbjct: 594  RTLLNMIRSMLVCKNVPKIFWPEALKWATYILNRSPTISVKNMTPEEAWSGTKPSVTHFR 653

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            +FGC+AY HVPDN+RKKLDNKS+KC+ LGIS+ESKAY+LY+
Sbjct: 654  VFGCLAYAHVPDNHRKKLDNKSVKCVHLGISDESKAYKLYN 694



 Score =  231 bits (589), Expect(4) = e-136
 Identities = 107/188 (56%), Positives = 138/188 (73%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G++ VI+ VY +P L  NLLS+GQLQQK + +IF +D CK YH EKGLI +  M+ NRM+
Sbjct: 344 GKVHVISNVYYLPGLNTNLLSVGQLQQKNVTIIFKNDVCKAYHDEKGLIFSTPMSTNRMY 403

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           ++ A  ++P+CLQ + +  T LWH R+GHLS   LKLL +K+MV+GLP L++ D  C +C
Sbjct: 404 IITAPVLVPMCLQTSIEDNTQLWHLRYGHLSIKGLKLLSKKDMVKGLPALQDMDEKCIDC 463

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
             GKQ REA+ KQ+ WRA+ KL+L HSDICGPI P SN  KRYF++F DDFSRK WVY L
Sbjct: 464 LNGKQQREAIPKQAKWRATTKLQLIHSDICGPINPSSNGGKRYFLTFTDDFSRKTWVYVL 523

Query: 546 TEKSAAFE 569
            EKS AFE
Sbjct: 524 KEKSEAFE 531



 Score = 59.7 bits (143), Expect(4) = e-136
 Identities = 29/76 (38%), Positives = 48/76 (63%)
 Frame = +1

Query: 1348 LKKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLVCEGGDPLTYEEAVKEDKWRRAMDNEI 1527
            ++K P  + D+VI R+ + + +L+ +  ++N+     GDP  YEEA K  KW+ AMD EI
Sbjct: 785  IRKTPSHLRDFVIGREAEEEQELH-SLAVYNMC----GDPNNYEEASKSQKWKEAMDVEI 839

Query: 1528 ASIEKNNTWELVDFQR 1575
             +I+ N+TWEL +  +
Sbjct: 840  KAIQANHTWELTELPK 855



 Score = 35.0 bits (79), Expect(4) = e-136
 Identities = 27/97 (27%), Positives = 49/97 (50%)
 Frame = +3

Query: 1065 KKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEAQE 1244
            KKI+IS+DVVF E++ W+W + ++        +  E +  ++   G ++E  V  NE + 
Sbjct: 698  KKIVISRDVVFDESKGWDWDNKDKQNDNRTSHELLEDNNTEEDISGTDNE-NVSENENEG 756

Query: 1245 HAVHNQIREESSGNATDVNQGPESADTEGEIQGRIKK 1355
              + N      SG    V +   S+D + ++  RI+K
Sbjct: 757  TGITN-----DSGTEEQVVEN-TSSDDDYDLGPRIRK 787


>dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subterraneum]
          Length = 1980

 Score =  237 bits (604), Expect(4) = e-135
 Identities = 108/161 (67%), Positives = 130/161 (80%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K F+ ++EKE+   I CLRTDRGGEF SNEF EYC  +GI+RQLT AYTPQQNGVAER+N
Sbjct: 541  KLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKN 600

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RTVMNMVRSL+ E  + ++FW EA+ W+FY+LNRCPT SVK+ TP EAW  +K SVGHLR
Sbjct: 601  RTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLR 660

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            +FGC+AY HVPD  R KL++KS  C+  G+SEESKAYRLYD
Sbjct: 661  VFGCIAYAHVPDARRTKLEDKSRCCVLFGVSEESKAYRLYD 701



 Score =  219 bits (557), Expect(4) = e-135
 Identities = 105/196 (53%), Positives = 133/196 (67%), Gaps = 6/196 (3%)
 Frame = +3

Query: 3   KGRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRM 182
           KG   ++ +VY +P LK+NLLS+GQLQ++ L V+   ++C+IYH  KGL+    M  NRM
Sbjct: 344 KGVNYLVRDVYYVPGLKNNLLSVGQLQERGLAVLMQSNECRIYHHTKGLVFQTNMTANRM 403

Query: 183 FVVMATPIL------PVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNN 344
           FV++++           C Q T+D V  LWHRRFGHLSY  LK LQ K MVRGLP     
Sbjct: 404 FVLLSSTQSIKKENKEECFQVTTDDVAHLWHRRFGHLSYKGLKTLQTKNMVRGLPSFSVG 463

Query: 345 DSICSECQVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSR 524
           + +C+ C  GKQHR+ +S++S WRAS KLEL H+DICGPI+P S   KRYFI FIDD+SR
Sbjct: 464 EIVCTNCLKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSR 523

Query: 525 KGWVYFLTEKSAAFET 572
           K WVYFL  KS AF T
Sbjct: 524 KAWVYFLAYKSDAFTT 539



 Score = 57.8 bits (138), Expect(4) = e-135
 Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
 Frame = +1

Query: 1351 KKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLV---CEGGDPLTYEEAVKEDKWRRAMDN 1521
            ++ P W+ DYV      S   L D E    L++       DP +++EAVKE KWR AMD 
Sbjct: 785  RRAPGWVNDYV------SGEGLSDEEVQTQLVLFAHAVHSDPTSFDEAVKEVKWRAAMDA 838

Query: 1522 EIASIEKNNTWELVDFQR 1575
            E+ SIEKN TW+L +  +
Sbjct: 839  EMKSIEKNGTWDLTELPK 856



 Score = 44.3 bits (103), Expect(4) = e-135
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNW-VSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEA 1238
            SK+I+IS+DVVF E+  WNW   +E+      + ++ +    +++  G   E   DGNE 
Sbjct: 704  SKRIIISRDVVFEEDGQWNWEKKSEEDNKFDTEWEDEKSEEREESSDGNEEENATDGNED 763

Query: 1239 QEHAVHNQIREESSGNATDVNQGPESADTEGEIQGR 1346
            +              NATD N+   +A    E + R
Sbjct: 764  E--------------NATDGNEDENTASPVTEHRNR 785



 Score = 57.0 bits (136), Expect(2) = 4e-13
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
 Frame = +1

Query: 1351 KKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLV---CEGGDPLTYEEAVKEDKWRRAMDN 1521
            ++ P W  DYV      S   L D E    L++       DP +++EAVKE KWR AMD 
Sbjct: 1057 RRAPGWTNDYV------SGEGLSDEEVQTQLVLFAHAVHSDPTSFDEAVKEVKWRAAMDA 1110

Query: 1522 EIASIEKNNTWELVDFQR 1575
            E+ SIEKN TW+L +  +
Sbjct: 1111 EMKSIEKNGTWDLTELPK 1128



 Score = 48.1 bits (113), Expect(2) = 4e-13
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
 Frame = +3

Query: 1026 VRNLKHIGFMI---NSKKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQAD 1196
            ++N +H  + +    SK+I+IS+DVVF E+  WNW    +         E EKS + +  
Sbjct: 952  IKNEEHKAYRLYDPTSKRIIISRDVVFEEDGQWNWEKKSEEDNNFDTEWEDEKSEEREES 1011

Query: 1197 KGVNSEP-TVDGNEAQEHAVHNQIREESSGNATDVNQGPESADTEGEIQGR 1346
              VN E    +GNE +     N+       NATD N+   +A    E + R
Sbjct: 1012 SDVNEEENAAEGNEEENATDGNE-----DENATDGNEDENTASPVTEHRNR 1057


>dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  236 bits (602), Expect(4) = e-134
 Identities = 103/161 (63%), Positives = 130/161 (80%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K+F+ M+EKE+   I CLRTDRGGEFNS+EF E+C  +GI+RQLTAAYTPQQNG+AER+N
Sbjct: 533  KKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGIKRQLTAAYTPQQNGIAERKN 592

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT+M M+R ++    + K FWPEA+ W+ Y+LNR PT ++KD TPEE WS  K SV H +
Sbjct: 593  RTIMEMIRCMLAGKSVPKAFWPEAVNWAIYVLNRSPTAAIKDMTPEEVWSSTKPSVKHFK 652

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            IFGC+AY HVPD  RKKLD+KS+KC+F GISEE+KAYRLY+
Sbjct: 653  IFGCIAYAHVPDAQRKKLDDKSVKCVFFGISEETKAYRLYN 693



 Score =  224 bits (572), Expect(4) = e-134
 Identities = 104/188 (55%), Positives = 142/188 (75%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G +Q+IT VY IP LK+NLLS+GQLQ+K L  +  ++ CK+YH++KG+IM   MA N++F
Sbjct: 344 GIVQIITGVYFIPKLKNNLLSLGQLQEKNLTFVIKNNWCKVYHRDKGMIMCSQMASNKLF 403

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
            +MA     VCLQA  + +T LWH R+GHL+   L+ LQQK MV GLP+ + ++ +C++C
Sbjct: 404 PIMAEA-KQVCLQANIEDITQLWHCRYGHLNIKGLQNLQQKNMVIGLPKFEESNHVCADC 462

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
             GKQHRE++ K SNW++S++LEL HSDICGPITP SNS KRY ++FIDD+SRK W Y+L
Sbjct: 463 LRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFIDDYSRKIWAYYL 522

Query: 546 TEKSAAFE 569
           + KS AFE
Sbjct: 523 SNKSDAFE 530



 Score = 59.7 bits (143), Expect(4) = e-134
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = +1

Query: 1351 KKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLV--CEGGDPLTYEEAVKEDKWRRAMDNE 1524
            +K P W  DY     +D   +L D + ++ +    C   DP ++EEAVK   WR AM+ E
Sbjct: 783  RKPPFWHSDYDTTITED---ELVDEDSMNFITFGPCTSEDPSSFEEAVKSSTWRLAMNKE 839

Query: 1525 IASIEKNNTWELVD 1566
            I +IEKN TW+L D
Sbjct: 840  IEAIEKNKTWQLTD 853



 Score = 33.1 bits (74), Expect(4) = e-134
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEAQ 1241
            +K+I+IS+DV F E + W W   E+ + +A  +   E+S  +  + GV    T +   +Q
Sbjct: 696  TKRIIISRDVKFVEKDKWKW--DEKSEKLAEQVISDEESDKNNEEIGVEIADTDEEVHSQ 753

Query: 1242 EHAVHN 1259
            +    N
Sbjct: 754  DSTPPN 759


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 551

 Score =  233 bits (594), Expect(4) = e-134
 Identities = 105/159 (66%), Positives = 130/159 (81%)
 Frame = +2

Query: 581  FRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRNRT 760
            F+ ++EKES   I CLRTDRGGEF S+EF E+C + GI+RQLT AYTPQQNGVAER+NRT
Sbjct: 236  FKNLVEKESGLMIKCLRTDRGGEFTSSEFNEFCQKTGIKRQLTTAYTPQQNGVAERKNRT 295

Query: 761  VMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLRIF 940
            +MN+VR+L++E KL K FWPEA+ W  Y+LNR PT+ VK++TPEEAWS VK SV H R+F
Sbjct: 296  IMNLVRTLLSEKKLPKSFWPEAVNWVAYVLNRSPTLVVKNQTPEEAWSGVKPSVEHFRVF 355

Query: 941  GCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            GCV ++HVPD  R KL+NKS KC+ LG+SEESK YRLY+
Sbjct: 356  GCVTHVHVPDAGRTKLENKSCKCVLLGMSEESKGYRLYN 394



 Score =  221 bits (563), Expect(4) = e-134
 Identities = 102/191 (53%), Positives = 136/191 (71%), Gaps = 3/191 (1%)
 Frame = +3

Query: 3   KGRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRM 182
           KG   +IT+V+++P LK+NLLSIGQLQ+K L V+F    CK+YH +KGLI+   M  NRM
Sbjct: 40  KGVTHIITDVFLVPELKNNLLSIGQLQEKGLTVMFQSGTCKLYHPDKGLILETNMTTNRM 99

Query: 183 FVVMATPILPV--CLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPE-LKNNDSI 353
           F++ A        C   ++  ++ LWHRR+ HLS+  L++LQ K MVRGLP  L   + +
Sbjct: 100 FILFAQSATKKDSCFHISTQDLSSLWHRRYAHLSHKGLRILQSKGMVRGLPSSLSTTEKV 159

Query: 354 CSECQVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGW 533
           C +C  GKQHR+ + K+S WRA +KLEL H+DICGPI P SNS+KRYF+ FIDD++RK W
Sbjct: 160 CEDCMKGKQHRDPIPKKSQWRAKQKLELIHADICGPIIPSSNSQKRYFLCFIDDYTRKAW 219

Query: 534 VYFLTEKSAAF 566
           +YFLTEKS AF
Sbjct: 220 IYFLTEKSEAF 230



 Score = 58.5 bits (140), Expect(4) = e-134
 Identities = 31/76 (40%), Positives = 41/76 (53%)
 Frame = +1

Query: 1339 RAELKKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLVCEGGDPLTYEEAVKEDKWRRAMD 1518
            R   +  P WM DYV         +  ++E   N+ + +  DP ++E  VK  KWR+AMD
Sbjct: 469  RGRNRHPPGWMRDYV------DGEEFSESEDAINMALIDCTDPESFEVVVKSSKWRQAMD 522

Query: 1519 NEIASIEKNNTWELVD 1566
             EI SI KN TWEL D
Sbjct: 523  AEINSIVKNGTWELTD 538



 Score = 40.4 bits (93), Expect(4) = e-134
 Identities = 25/70 (35%), Positives = 36/70 (51%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEAQ 1241
            ++KI+IS+DVVF E+  WNW  + + +  A DL+ G    D +    V  E T DG    
Sbjct: 397  TRKIVISRDVVFEEDTQWNWNVSHREEQFA-DLEYG----DTKNTAEVEEENTADGESND 451

Query: 1242 EHAVHNQIRE 1271
            E    +Q  E
Sbjct: 452  EEGNQSQNEE 461


>dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subterraneum]
          Length = 1302

 Score =  234 bits (598), Expect(4) = e-133
 Identities = 102/161 (63%), Positives = 129/161 (80%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K+F+ M+EKE+   I CLRTDRGGEFNS+EF E+C  +GI+RQLTAAYTPQQNG+AER+N
Sbjct: 533  KKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGIKRQLTAAYTPQQNGIAERKN 592

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT+M M+R ++    + K FWPEA+ W+ Y+LNR PT ++KD TPEE WS  K SV H +
Sbjct: 593  RTIMEMIRCMLAGKSVPKAFWPEAVNWAIYVLNRSPTAAIKDMTPEEVWSSTKPSVKHFK 652

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            IFGC+AY H PD  RKKLD+KS+KC+F GISEE+KAYRLY+
Sbjct: 653  IFGCIAYAHAPDAQRKKLDDKSVKCVFFGISEETKAYRLYN 693



 Score =  224 bits (570), Expect(4) = e-133
 Identities = 103/188 (54%), Positives = 143/188 (76%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G +Q+IT V+ IP LK+NLLS+GQ Q+K L  +  ++ CK+YH++KG+IM   MA N++F
Sbjct: 344 GIVQIITGVHFIPKLKNNLLSLGQFQEKSLTFVIKNNWCKVYHRDKGMIMCSQMASNKLF 403

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
            +MA     VCLQA ++ +T LWH R+GHL+   L+ LQQK MV GLP+ + ++ +C++C
Sbjct: 404 PIMAEA-KQVCLQANTEDITQLWHCRYGHLNIKGLQNLQQKNMVIGLPKFEESNHVCADC 462

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
             GKQHRE++ K SNW++S++LEL HSDICGPITP SNS KRY ++FIDD+SRK WVY+L
Sbjct: 463 LRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFIDDYSRKIWVYYL 522

Query: 546 TEKSAAFE 569
           + KS AFE
Sbjct: 523 SNKSDAFE 530



 Score = 59.3 bits (142), Expect(4) = e-133
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
 Frame = +1

Query: 1351 KKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLV--CEGGDPLTYEEAVKEDKWRRAMDNE 1524
            +K P W  DY     +D   +L D + ++ +    C   DP ++EEA+K   WR AM+ E
Sbjct: 783  RKPPFWHNDYDTTITED---ELVDEDSMNFITFGPCTSEDPSSFEEAIKSSTWRLAMNKE 839

Query: 1525 IASIEKNNTWELVD 1566
            I +IEKN TW+L D
Sbjct: 840  IEAIEKNKTWQLTD 853



 Score = 31.6 bits (70), Expect(4) = e-133
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEAQ 1241
            +K+I+ S+DV F E + W W   E+ + +A  +   E+S  +  + GV    T +   +Q
Sbjct: 696  TKRIIFSRDVKFVEKDKWKW--DEKSEKLAEQVISDEESDKNNEEIGVEIADTDEEVHSQ 753

Query: 1242 EHAVHN 1259
            +    N
Sbjct: 754  DSTPPN 759


>dbj|GAU44758.1| hypothetical protein TSUD_246510 [Trifolium subterraneum]
          Length = 1301

 Score =  226 bits (575), Expect(4) = e-131
 Identities = 106/188 (56%), Positives = 131/188 (69%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G + VI+ VY +P LK NLLSIGQLQQK++ VIF +D CK+YH +KGL+ T  M  N M+
Sbjct: 346 GVVHVISNVYFVPGLKTNLLSIGQLQQKQITVIFKNDMCKVYHDDKGLLFTTEMTNNMMY 405

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           +V AT I P+CL+      T LWH RF H S+  L  L +K+MVRGLPEL+  +  C +C
Sbjct: 406 IVSATVISPMCLRTAKQESTLLWHNRFAHFSFKGLNALAKKQMVRGLPELEELEENCVDC 465

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
             GKQHR  + KQ+ WRAS KLEL HSDICGPI P SN   RYFI+F DD+SR  WVY +
Sbjct: 466 LSGKQHRGTIPKQAKWRASTKLELIHSDICGPINPSSNGGNRYFITFTDDYSRMTWVYVM 525

Query: 546 TEKSAAFE 569
            EKS+AFE
Sbjct: 526 KEKSSAFE 533



 Score =  220 bits (561), Expect(4) = e-131
 Identities = 98/161 (60%), Positives = 130/161 (80%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K F+ M+EKE+   I CLR+DRGGE+ SN F E+C E GI+RQLTAAYTPQQNGV+ER+N
Sbjct: 536  KVFKAMVEKETGTSIVCLRSDRGGEYTSNVFNEFCREEGIKRQLTAAYTPQQNGVSERKN 595

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT++NMVRS+++   + KQ WPEA+ W+ +++NR PT+SVKD TP+EAWSE K  V + +
Sbjct: 596  RTLLNMVRSMISARNMPKQIWPEAVIWATHVINRSPTLSVKDMTPQEAWSEKKPVVHYFK 655

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
             FGC+A++H+ D NRKKLD+KS  C+ LG+SEESKAY+LYD
Sbjct: 656  TFGCLAHVHINDANRKKLDSKSKSCVLLGVSEESKAYKLYD 696



 Score = 53.9 bits (128), Expect(4) = e-131
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
 Frame = +1

Query: 1348 LKKNPIWMGDYVILRDQDSDSDLYDNEGLHNLLVCEGG-DPLTYEEAVKEDKWRRAMDNE 1524
            +++  + + DYV  R+ + D DL      +N  + +   DP +Y+EA K + WR+AM+ E
Sbjct: 786  IRRPSVKLTDYVTGREAEEDEDL------NNFAIFKTDEDPTSYDEAAKSEIWRQAMNVE 839

Query: 1525 IASIEKNNTWEL 1560
            I SI+KN+TWEL
Sbjct: 840  IESIKKNDTWEL 851



 Score = 42.4 bits (98), Expect(4) = e-131
 Identities = 25/67 (37%), Positives = 44/67 (65%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEAQ 1241
            SKKI+IS+DVVF E +TWNW ++E+ KT++ +  E  +S++     G N + T + N+  
Sbjct: 699  SKKIIISRDVVFEELKTWNWDNSER-KTISNNEWEQSESIE---GLGENVDMTENLNDEI 754

Query: 1242 EHAVHNQ 1262
            E+ + ++
Sbjct: 755  ENTLTDE 761


>dbj|GAU51653.1| hypothetical protein TSUD_414750 [Trifolium subterraneum]
          Length = 847

 Score =  242 bits (618), Expect(3) = e-129
 Identities = 107/161 (66%), Positives = 136/161 (84%)
 Frame = +2

Query: 575  KRFRMMIEKESQCQISCLRTDRGGEFNSNEFTEYCAEHGIRRQLTAAYTPQQNGVAERRN 754
            K+F+ ++EKES  QI CLRTDRGGEF SN F EYC+ HGI+RQLT AYTPQQNGV+ER+N
Sbjct: 535  KKFKALVEKESNTQIMCLRTDRGGEFTSNAFNEYCSAHGIKRQLTTAYTPQQNGVSERKN 594

Query: 755  RTVMNMVRSLMNEAKLQKQFWPEAIKWSFYILNRCPTVSVKDKTPEEAWSEVKASVGHLR 934
            RT++NMVRS+++   + K FWPEA+KW+ Y+LNR PT+SVKD TPE+AWS  K +V H R
Sbjct: 595  RTLLNMVRSMLDGKCVPKTFWPEALKWATYVLNRSPTLSVKDMTPEKAWSGSKPTVEHFR 654

Query: 935  IFGCVAYMHVPDNNRKKLDNKSIKCIFLGISEESKAYRLYD 1057
            +FGCVA++H+PD+ RKKLD+KSI+CI LG+SEESK Y+LYD
Sbjct: 655  VFGCVAFVHIPDSQRKKLDSKSIQCILLGLSEESKGYKLYD 695



 Score =  227 bits (579), Expect(3) = e-129
 Identities = 107/188 (56%), Positives = 134/188 (71%)
 Frame = +3

Query: 6   GRIQVITEVYVIPNLKDNLLSIGQLQQKKLKVIFDDDKCKIYHKEKGLIMT*IMAKNRMF 185
           G  QVIT+VY IP LK+NLLSIGQLQQK L ++F  D CK+YH+EKGLIM+  M+ NRM+
Sbjct: 345 GLTQVITDVYYIPGLKNNLLSIGQLQQKNLTIVFKKDLCKVYHEEKGLIMSTKMSSNRMY 404

Query: 186 VVMATPILPVCLQATSDSVTGLWHRRFGHLSYNSLKLLQQKEMVRGLPELKNNDSICSEC 365
           V+ A  I+P+C +        LWH R+GHLS+  L  L +KEMV+GLP L++ +     C
Sbjct: 405 VIFAPIIVPMCFKTVKMDNNELWHCRYGHLSFKGLNTLVKKEMVKGLPHLQDMEDTFVSC 464

Query: 366 QVGKQHREAMSKQSNWRASRKLELFHSDICGPITPESNSKKRYFISFIDDFSRKGWVYFL 545
              KQHREA+ K SNWRA++ LEL HSDICGPITP+SN   RYFI+F DDFSRK W Y L
Sbjct: 465 LTSKQHREAIPKSSNWRATKLLELVHSDICGPITPQSNGGNRYFITFTDDFSRKTWTYLL 524

Query: 546 TEKSAAFE 569
             K+ AF+
Sbjct: 525 ANKACAFD 532



 Score = 45.1 bits (105), Expect(3) = e-129
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
 Frame = +3

Query: 1062 SKKIMISKDVVFAENETWNWVSTEQGKTVACDLDEGEKSVDDQADKGVNSEPTVDGNEAQ 1241
            SK+I++S+DV+F E++ WN    + GK+   + DEG   + +  +  +N       N   
Sbjct: 698  SKRIIVSRDVIFDESKGWNDDQKQAGKS---NNDEGTSLITEDTEIEINEPGNFHHN--- 751

Query: 1242 EHAVHNQIREESSGNATDVNQGPESADTEG----EIQGRIKKK 1358
            EH    Q+ E ++ +   V +     D E     E+  R+ KK
Sbjct: 752  EHITDQQVHESNTDSDQQVEESSSEVDEESTDSDELPPRVVKK 794