BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00018929
         (551 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY10806.1| histone deacetylase [Trifolium pratense]                81   4e-24
gb|PNY10805.1| histone deacetylase, partial [Trifolium pratense]       81   4e-24
gb|PNX84343.1| retrovirus-related Pol polyprotein from transposo...    74   5e-22
gb|PNX63176.1| retrovirus-related Pol polyprotein from transposo...    78   5e-22
dbj|GAU30708.1| hypothetical protein TSUD_39320 [Trifolium subte...    68   8e-22
gb|PNX56029.1| retrovirus-related Pol polyprotein from transposo...    74   8e-22
gb|PNX57709.1| retrovirus-related Pol polyprotein from transposo...    74   1e-21
gb|PNX93770.1| histone deacetylase [Trifolium pratense]                69   1e-21
gb|PNX63257.1| retrovirus-related Pol polyprotein from transposo...    74   2e-21
dbj|GAU29238.1| hypothetical protein TSUD_362280 [Trifolium subt...    67   3e-21
gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]       67   5e-21
gb|PNX90864.1| retrovirus-related Pol polyprotein from transposo...    72   5e-21
dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subt...    65   6e-21
dbj|GAU11134.1| hypothetical protein TSUD_197580 [Trifolium subt...    71   1e-20
dbj|GAU44321.1| hypothetical protein TSUD_305020 [Trifolium subt...    64   3e-20
gb|PNY05793.1| histone deacetylase [Trifolium pratense]                64   5e-20
gb|PNX81124.1| histone deacetylase, partial [Trifolium pratense]       67   5e-20
dbj|GAU26016.1| hypothetical protein TSUD_64040 [Trifolium subte...    64   7e-20
gb|PNY12956.1| retrovirus-related Pol polyprotein from transposo...    63   7e-20
gb|PNX79340.1| retrovirus-related Pol polyprotein from transposo...    66   7e-20

>gb|PNY10806.1| histone deacetylase [Trifolium pratense]
          Length = 1441

 Score = 81.3 bits (199), Expect(2) = 4e-24
 Identities = 39/55 (70%), Positives = 44/55 (80%)
 Frame = +1

Query: 121 TNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPMIPPKYAS 285
           T SSSS   + A KLSIKLDDKN+LLWNQQVEGV+  HKLH+ +VNP IP KYAS
Sbjct: 14  TGSSSSGKVSFAPKLSIKLDDKNYLLWNQQVEGVILAHKLHKFVVNPQIPMKYAS 68



 Score = 57.8 bits (138), Expect(2) = 4e-24
 Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 22/110 (20%)
 Frame = +3

Query: 288 SNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFN---- 443
           S+R+ D V+D +++WLVQDQ LFT LLS L+ SVLPR +    +F +  +  + F+    
Sbjct: 70  SDRLLDKVTDAYDQWLVQDQMLFTWLLSTLAESVLPRTVGCRHAFQVWDQIHKYFDAHLK 129

Query: 444 --------------NITSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                           T   SEF+ +V +I D+LI+I  +I++    D I
Sbjct: 130 AKVRQLRSELKTVKKGTKSISEFVLRVRAIADTLISIGDSISEQDQIDSI 179


>gb|PNY10805.1| histone deacetylase, partial [Trifolium pratense]
          Length = 720

 Score = 81.3 bits (199), Expect(2) = 4e-24
 Identities = 39/55 (70%), Positives = 44/55 (80%)
 Frame = +1

Query: 121 TNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPMIPPKYAS 285
           T SSSS   + A KLSIKLDDKN+LLWNQQVEGV+  HKLH+ +VNP IP KYAS
Sbjct: 14  TGSSSSGKVSFAPKLSIKLDDKNYLLWNQQVEGVILAHKLHKFVVNPQIPMKYAS 68



 Score = 57.8 bits (138), Expect(2) = 4e-24
 Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 22/110 (20%)
 Frame = +3

Query: 288 SNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFN---- 443
           S+R+ D V+D +++WLVQDQ LFT LLS L+ SVLPR +    +F +  +  + F+    
Sbjct: 70  SDRLLDKVTDAYDQWLVQDQMLFTWLLSTLAESVLPRTVGCRHAFQVWDQIHKYFDAHLK 129

Query: 444 --------------NITSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                           T   SEF+ +V +I D+LI+I  +I++    D I
Sbjct: 130 AKVRQLRSELKTVKKGTKSISEFVLRVRAIADTLISIGDSISEQDQIDSI 179


>gb|PNX84343.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 560

 Score = 73.6 bits (179), Expect(2) = 5e-22
 Identities = 36/74 (48%), Positives = 49/74 (66%)
 Frame = +1

Query: 64  QSPNSNDTPIVTTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLH 243
           +SP +N+TP  T++        SS    T +L  +IKLD+KNFLLW+QQV GV+  H LH
Sbjct: 3   ESPVNNETPTATSADLPNTKKQSSKSGLTHSL--TIKLDEKNFLLWSQQVNGVITAHNLH 60

Query: 244 RLLVNPMIPPKYAS 285
           R +VNP IP ++AS
Sbjct: 61  RFVVNPQIPLQFAS 74



 Score = 58.5 bits (140), Expect(2) = 5e-22
 Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNIT 452
           +++R+  N SDE+++WL +DQTLFT LLS +S SVLPRVL    S  +     + FN++ 
Sbjct: 75  VTDRLDGNNSDEYQQWLFKDQTLFTWLLSTISDSVLPRVLNCKHSHEVWETIHKYFNSVL 134

Query: 453 ------------------SPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                                +E++ ++ SIV+SLIA+  T++     D I
Sbjct: 135 KSRARQLRSELKNTKKHGKSVNEYLLRIKSIVNSLIAVGDTVSVQEQVDAI 185


>gb|PNX63176.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 273

 Score = 78.2 bits (191), Expect(2) = 5e-22
 Identities = 42/65 (64%), Positives = 50/65 (76%), Gaps = 3/65 (4%)
 Frame = +1

Query: 100 TSVFQGVTN---SSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPMIP 270
           TSVF G ++   SS++ HF  A KLSIKLD+KNFLLW+QQVEGV+  HKLHR +VNP IP
Sbjct: 28  TSVFAGSSSEGQSSTAVHF--APKLSIKLDEKNFLLWHQQVEGVIISHKLHRFVVNPQIP 85

Query: 271 PKYAS 285
            KY S
Sbjct: 86  AKYDS 90



 Score = 53.9 bits (128), Expect(2) = 5e-22
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 22/110 (20%)
 Frame = +3

Query: 288 SNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVLSF--------IIHGKFG---- 431
           ++R  D VS  ++KWLVQDQ LFT LLS L+ SVLPR +S          IH  F     
Sbjct: 92  ADRELDEVSAAYDKWLVQDQMLFTWLLSTLAESVLPRTISCRHAFQVWEEIHNYFNAQTK 151

Query: 432 ----------RRFNNITSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                     +     T   +EFI +V ++ ++LI+I  ++++    D I
Sbjct: 152 AKIRQLRSELKTVKKGTKTITEFILRVRAVANTLISIGDSVSEQDQIDSI 201


>dbj|GAU30708.1| hypothetical protein TSUD_39320 [Trifolium subterraneum]
          Length = 1432

 Score = 68.2 bits (165), Expect(2) = 8e-22
 Identities = 34/74 (45%), Positives = 44/74 (59%)
 Frame = +1

Query: 64  QSPNSNDTPIVTTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLH 243
           Q  N+ D     T+     T +  S    L   L+IKLD+KNFLLW+QQV GV+  H LH
Sbjct: 4   QQQNNGDLNDTETTAMNLPTTAKDSSKSGLTHSLTIKLDEKNFLLWSQQVNGVITTHNLH 63

Query: 244 RLLVNPMIPPKYAS 285
           R +VNP IP ++AS
Sbjct: 64  RFVVNPEIPLQFAS 77



 Score = 63.2 bits (152), Expect(2) = 8e-22
 Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNI- 449
           +++R+   +SDE+ KWL +DQTLFT LLS +S SVLPRVL    S  +  K  + FN++ 
Sbjct: 78  VNDRLDGKISDEYRKWLFKDQTLFTWLLSTISDSVLPRVLHCKHSHEVWDKIHKYFNSVL 137

Query: 450 -----------------TSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                                SE++ ++ SI++SLIA+ ++I++    D I
Sbjct: 138 KSRIRQLRSELKNTKKLARSVSEYLLRIKSIINSLIAMGESISEQEQIDAI 188


>gb|PNX56029.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 242

 Score = 73.9 bits (180), Expect(2) = 8e-22
 Identities = 37/76 (48%), Positives = 49/76 (64%)
 Frame = +1

Query: 58  PEQSPNSNDTPIVTTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHK 237
           P Q+P++N +  V T+     T  SS    T +L  +IKLD+KN+LLWNQQV GV+  H 
Sbjct: 3   PPQTPDANASEDVATADLPSTTKGSSKSGLTHSL--TIKLDEKNYLLWNQQVNGVITAHN 60

Query: 238 LHRLLVNPMIPPKYAS 285
           LHR +VNP IP +Y S
Sbjct: 61  LHRFVVNPEIPLQYTS 76



 Score = 57.4 bits (137), Expect(2) = 8e-22
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 26/119 (21%)
 Frame = +3

Query: 273 EVRLLSNRVADNV----SDEFEKWLVQDQTLFT*LLSMLSRSVLPRVLSF--------II 416
           E+ L    VAD +    SDE+++WL +DQTLFT LLS +S  VLPRVL+          I
Sbjct: 69  EIPLQYTSVADRLDGKNSDEYQRWLFKDQTLFTWLLSTISDGVLPRVLNCKHSHEVWDTI 128

Query: 417 HGKFG--------------RRFNNITSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
           H  F               +    ++   +E++ +V SIV+SLIA+   +++    D I
Sbjct: 129 HKFFNSVLKSRARQLRSELKNTKKLSKSVNEYLLRVKSIVNSLIAVGDVVSEQEQVDAI 187


>gb|PNX57709.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 242

 Score = 73.6 bits (179), Expect(2) = 1e-21
 Identities = 36/76 (47%), Positives = 49/76 (64%)
 Frame = +1

Query: 58  PEQSPNSNDTPIVTTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHK 237
           P Q+P++N +  + T+     T  SS    T +L  +IKLD+KN+LLWNQQV GV+  H 
Sbjct: 3   PPQTPSANASEDIATTDLPSTTKGSSKSGLTHSL--TIKLDEKNYLLWNQQVNGVITAHN 60

Query: 238 LHRLLVNPMIPPKYAS 285
           LHR +VNP IP +Y S
Sbjct: 61  LHRFVVNPEIPLQYTS 76



 Score = 57.4 bits (137), Expect(2) = 1e-21
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 26/119 (21%)
 Frame = +3

Query: 273 EVRLLSNRVADNV----SDEFEKWLVQDQTLFT*LLSMLSRSVLPRVLSF--------II 416
           E+ L    VAD +    SDE+++WL +DQTLFT LLS +S  VLPRVL+          I
Sbjct: 69  EIPLQYTSVADRLDGKNSDEYQRWLFKDQTLFTWLLSTISDGVLPRVLNCKHSHEVWDTI 128

Query: 417 HGKFG--------------RRFNNITSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
           H  F               +    ++   +E++ +V SIV+SLIA+   +++    D I
Sbjct: 129 HKFFNSVLKSRARQLRSELKNTKKLSKSVNEYLLRVKSIVNSLIAVGDVVSEQEQVDAI 187


>gb|PNX93770.1| histone deacetylase [Trifolium pratense]
          Length = 1453

 Score = 69.3 bits (168), Expect(2) = 1e-21
 Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
 Frame = +1

Query: 67  SPNSNDTPIV--TTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKL 240
           S NS + P+V  +T+       S  S    L   L+IKLD+KNFLLW+QQV GV+  H L
Sbjct: 3   SANSTEEPLVRNSTAEINLPQTSKESTKSGLTHSLTIKLDEKNFLLWSQQVNGVITAHNL 62

Query: 241 HRLLVNPMIPPKYAS 285
           HR +VNP IP +YAS
Sbjct: 63  HRFVVNPEIPLQYAS 77



 Score = 61.2 bits (147), Expect(2) = 1e-21
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNI- 449
           +++R+    SDE++KWL +DQTLFT LLS +S SVLPRVL    +  +  K  + FN++ 
Sbjct: 78  VTDRLDGKNSDEYQKWLFKDQTLFTWLLSTISDSVLPRVLNCKHAHEVWDKIHKYFNSVL 137

Query: 450 -----------------TSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                                SE++ ++ SIV+SLIA+   +T+    D I
Sbjct: 138 KSRARQLRSELKNTKKLARSVSEYLLRIKSIVNSLIAMGDVVTEQEQVDAI 188


>gb|PNX63257.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 247

 Score = 73.6 bits (179), Expect(2) = 2e-21
 Identities = 36/57 (63%), Positives = 43/57 (75%)
 Frame = +1

Query: 115 GVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPMIPPKYAS 285
           G ++ ++S     A KLSIKLDDKNFLLWNQQVEGV+  +KLHR +VNP IP KY S
Sbjct: 10  GSSSGNNSGVVNFAPKLSIKLDDKNFLLWNQQVEGVILSNKLHRFVVNPEIPAKYNS 66



 Score = 56.6 bits (135), Expect(2) = 2e-21
 Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 22/110 (20%)
 Frame = +3

Query: 288 SNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFN---- 443
           S+R  D VS+ ++KW+VQDQ LFT LLS L+ SVLPR +    +F +  +  + FN    
Sbjct: 68  SDRELDIVSEAYDKWIVQDQMLFTWLLSTLAESVLPRTIGCCHAFQVWEQIHKYFNAHLK 127

Query: 444 --------------NITSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                           T   +EF+ +V +I D+L+++  ++T+    D I
Sbjct: 128 AKVRQLRSELKTIKKGTKTITEFVLRVRAIADTLLSVGDSVTEQDQIDSI 177


>dbj|GAU29238.1| hypothetical protein TSUD_362280 [Trifolium subterraneum]
          Length = 1433

 Score = 67.0 bits (162), Expect(2) = 3e-21
 Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNI- 449
           +++R+    SDE+ KWL +DQTLFT LLS +S +VLPRV+    S  +  K  + FN++ 
Sbjct: 78  VNDRIEGKTSDEYRKWLFKDQTLFTWLLSTISDAVLPRVVHCKHSHEVWDKIHKYFNSVL 137

Query: 450 -----------------TSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                              P SE++ ++ SIV+SLIA+ +T+T+    D I
Sbjct: 138 KSRIRQLRSELKNTKKLARPVSEYLLRIKSIVNSLIAMGETVTEQEQIDAI 188



 Score = 62.4 bits (150), Expect(2) = 3e-21
 Identities = 28/45 (62%), Positives = 35/45 (77%)
 Frame = +1

Query: 151 LALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPMIPPKYAS 285
           L   L+IKLD+KNFLLW+QQV GV+  H LHR +VNP IP ++AS
Sbjct: 33  LTHSLTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNPEIPLQFAS 77


>gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1418

 Score = 66.6 bits (161), Expect(2) = 5e-21
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
 Frame = +1

Query: 76  SNDTP--IVTTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRL 249
           + +TP  I T +     + ++ S+   L   L+IKLDDKNFLLW+QQV GV+  H LHR 
Sbjct: 4   AQETPAEIDTATTINLPSTAAPSRKSGLTHSLTIKLDDKNFLLWSQQVNGVITAHNLHRF 63

Query: 250 LVNPMIPPKYAS 285
           +VNP IP ++AS
Sbjct: 64  VVNPQIPLQFAS 75



 Score = 62.0 bits (149), Expect(2) = 5e-21
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVLS----FIIHGKFGRRFNNI- 449
           +++R+    S+E++KWL +DQTLFT LLS +S SVLPRVLS      +  K  R FN++ 
Sbjct: 76  VTDRLDGKNSEEYQKWLFKDQTLFTWLLSTMSDSVLPRVLSCKHAHEVWDKIHRYFNSVL 135

Query: 450 -----------------TSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                            +   +E++ ++ SIV+SL+A+  T+++    D I
Sbjct: 136 KSRARQLRSELKNTKKLSRSVNEYLLRIKSIVNSLVAVGDTVSEQEQVDAI 186


>gb|PNX90864.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 401

 Score = 72.0 bits (175), Expect(2) = 5e-21
 Identities = 32/73 (43%), Positives = 49/73 (67%)
 Frame = +1

Query: 67  SPNSNDTPIVTTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHR 246
           +P++++ PI  + +   + N+  S    L   ++IKLD+KNFLLW+QQV GV+  H LHR
Sbjct: 4   TPSTDEIPIADSGIAIDLPNTKGSTKSALTHSITIKLDEKNFLLWSQQVNGVITAHNLHR 63

Query: 247 LLVNPMIPPKYAS 285
            +VNP IP ++AS
Sbjct: 64  FVVNPEIPLQFAS 76



 Score = 56.6 bits (135), Expect(2) = 5e-21
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVLSF--------IIHGKFG--- 431
           +++R+    SDE+++WL +DQ+LFT LLS +S +VLPRVLS          IH  F    
Sbjct: 77  VADRLDGKTSDEYQRWLFKDQSLFTWLLSTISDNVLPRVLSCKHAYEVWDTIHKYFNSVL 136

Query: 432 -----------RRFNNITSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                      +    +T   +E++ ++ SIV+SLIA+   ++     D +
Sbjct: 137 KARARQLRSELKNTKKLTRSVNEYLLRIKSIVNSLIAVGDVVSVQEQVDAV 187


>dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subterraneum]
          Length = 1442

 Score = 64.7 bits (156), Expect(2) = 6e-21
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +1

Query: 127 SSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPMIPPKYAS 285
           S  S    L   L+IKLD+KN+LLWNQQV GV+  H LHR +VNP IP ++AS
Sbjct: 25  SKDSAKSGLTHSLTIKLDEKNYLLWNQQVNGVITAHDLHRFIVNPQIPIQFAS 77



 Score = 63.5 bits (153), Expect(2) = 6e-21
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 22/110 (20%)
 Frame = +3

Query: 288 SNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNI-- 449
           ++RVAD  SDE+ +W+ +DQTLFT LLS LS SVLPRVL    +F +  +  + F+++  
Sbjct: 79  ADRVADRTSDEYRQWIFKDQTLFTWLLSTLSDSVLPRVLGCKHAFQVWDQIHKYFHSVLQ 138

Query: 450 ----------------TSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                           +    E++ ++ SIV+SL+A+   ++D    D I
Sbjct: 139 ARARQLRSELKNTKKASRSVGEYLLRIKSIVNSLLAVGDLVSDREQVDAI 188


>dbj|GAU11134.1| hypothetical protein TSUD_197580 [Trifolium subterraneum]
          Length = 1234

 Score = 70.9 bits (172), Expect(2) = 1e-20
 Identities = 35/79 (44%), Positives = 47/79 (59%)
 Frame = +1

Query: 49  MTIPEQSPNSNDTPIVTTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVK 228
           M +  +SPN     +  T+       + +S+   L   L+IKLD+KNFLLWNQQV GV+ 
Sbjct: 1   MAVSNESPNHTTETLNHTTDVNLPPTAKNSRKSGLTHSLTIKLDEKNFLLWNQQVNGVIT 60

Query: 229 MHKLHRLLVNPMIPPKYAS 285
            H LHR +VNP IP +Y S
Sbjct: 61  AHNLHRFVVNPQIPLQYES 79



 Score = 56.2 bits (134), Expect(2) = 1e-20
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 22/104 (21%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNIT 452
           + +R+    SDE+++WL +DQ+LFT LLS +S  VLPRVL    S+ +  +  + FN++ 
Sbjct: 80  VEDRLDGKNSDEYQQWLFKDQSLFTWLLSTISDDVLPRVLSCKHSYEVWEQIHKHFNSVL 139

Query: 453 SPTS------------------EFITKVHSIVDSLIAIDKTITD 530
              S                  E++ ++ SIV+SLIA+   ++D
Sbjct: 140 KSRSRQLRSELKNTKKMARSVNEYLIRIKSIVNSLIAVGDVVSD 183


>dbj|GAU44321.1| hypothetical protein TSUD_305020 [Trifolium subterraneum]
          Length = 468

 Score = 63.5 bits (153), Expect(2) = 3e-20
 Identities = 29/55 (52%), Positives = 38/55 (69%)
 Frame = +1

Query: 121 TNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPMIPPKYAS 285
           T +  S    L   L+IKLD+KNFLLW+QQ+ GV+  H LHR +VNP IP ++AS
Sbjct: 247 TTTKDSTKSGLTHSLTIKLDEKNFLLWSQQINGVITTHNLHRFVVNPEIPLQFAS 301



 Score = 62.4 bits (150), Expect(2) = 3e-20
 Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNI- 449
           +++R+   +S+E++KWL  DQTLFT LLS +S S+LPRVL    +  +  K  + FN++ 
Sbjct: 302 VNDRLNGKISEEYQKWLFIDQTLFTWLLSTISDSILPRVLHCKHAHEVWDKIHKHFNSVL 361

Query: 450 -----------------TSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                              P SE++ ++ SI++SLIA+ + +++    +VI
Sbjct: 362 KSRIRQLRFELKNTKKLARPISEYLLRIKSIINSLIALGEAVSEQEQVNVI 412


>gb|PNY05793.1| histone deacetylase [Trifolium pratense]
          Length = 1485

 Score = 63.9 bits (154), Expect(2) = 5e-20
 Identities = 29/53 (54%), Positives = 37/53 (69%)
 Frame = +1

Query: 127 SSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPMIPPKYAS 285
           S  S    L   L+IKLD+KNFLLW+QQV GV+  H LHR ++NP IP K+A+
Sbjct: 37  SKDSSRSGLTHSLTIKLDEKNFLLWSQQVNGVITAHNLHRFILNPKIPLKFAT 89



 Score = 61.2 bits (147), Expect(2) = 5e-20
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 22/108 (20%)
 Frame = +3

Query: 294 RVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNITSPT 461
           R  +   DE+ KWL+QDQTLFT LLS LS  VLPRVL    ++ +  K  + FN++    
Sbjct: 93  RATNTFCDEYRKWLMQDQTLFTWLLSTLSDGVLPRVLGCKHAYQVWDKIHKYFNSLLKAR 152

Query: 462 S------------------EFITKVHSIVDSLIAIDKTITDTYLTDVI 551
           +                  E++ ++ +I+DSL AI  T++D    D I
Sbjct: 153 ARQLRSELKNTKKLARSIGEYLLRIKTIIDSLTAIGDTVSDQEHIDAI 200


>gb|PNX81124.1| histone deacetylase, partial [Trifolium pratense]
          Length = 660

 Score = 67.0 bits (162), Expect(2) = 5e-20
 Identities = 36/67 (53%), Positives = 47/67 (70%)
 Frame = +1

Query: 85  TPIVTTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPM 264
           TPI  T+V    T+  S++   L   L+IKLD+KNFLLW+QQV GV+  H LHRL+VNP 
Sbjct: 10  TPIHKTTVDLPNTSRESTKS-GLTHSLTIKLDEKNFLLWSQQVNGVITAHNLHRLVVNPE 68

Query: 265 IPPKYAS 285
           IP ++AS
Sbjct: 69  IPLQFAS 75



 Score = 58.2 bits (139), Expect(2) = 5e-20
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNI- 449
           +++R+    S+E++KWL +DQTLFT LLS +S  VLPRVL    S+ +  K    FN++ 
Sbjct: 76  VTDRLDGKNSEEYQKWLFKDQTLFTWLLSTISDGVLPRVLSCKHSYEVWEKIHTYFNSVL 135

Query: 450 -----------------TSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                            +   +E++ ++ SIV+SLIAI   +++    D I
Sbjct: 136 KSRARQLRSELKNTKKHSRTVNEYLLRIKSIVNSLIAIGDVVSEREQVDAI 186


>dbj|GAU26016.1| hypothetical protein TSUD_64040 [Trifolium subterraneum]
          Length = 942

 Score = 64.3 bits (155), Expect(2) = 7e-20
 Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNI- 449
           +++R+  N S+E+ KWL +DQTLFT LLS +S SVLPRVL    S  +  K  + FN++ 
Sbjct: 78  VNDRIEGNTSEEYRKWLFKDQTLFTWLLSTISDSVLPRVLHCKHSHEVWDKIHKYFNSVL 137

Query: 450 -----------------TSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                                SE++ ++ SIV+SLIA+ + +++    D I
Sbjct: 138 KSRIRQLRSELKNTKKLARSVSEYLLRIKSIVNSLIAMSEVVSEQEQVDAI 188



 Score = 60.5 bits (145), Expect(2) = 7e-20
 Identities = 26/45 (57%), Positives = 35/45 (77%)
 Frame = +1

Query: 151 LALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPMIPPKYAS 285
           L   ++IKLD+KNFLLW+QQV GV+  H LHR +VNP IP ++A+
Sbjct: 33  LTHSITIKLDEKNFLLWSQQVNGVITAHNLHRFVVNPNIPLQFAT 77


>gb|PNY12956.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 823

 Score = 62.8 bits (151), Expect(2) = 7e-20
 Identities = 31/63 (49%), Positives = 40/63 (63%)
 Frame = +1

Query: 97  TTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKLHRLLVNPMIPPK 276
           +T+     T    S    L   L+IKL+DKN+LLW+QQV GV+  H LHR +VNP IP +
Sbjct: 10  STAAIDLPTTVKESTKSGLTHALTIKLNDKNYLLWSQQVNGVITAHNLHRFVVNPEIPLQ 69

Query: 277 YAS 285
           YAS
Sbjct: 70  YAS 72



 Score = 62.0 bits (149), Expect(2) = 7e-20
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNI- 449
           +++R+    SDE++KWLV+DQTLFT LLS +S  VLPRVL    S  +  K  + FN++ 
Sbjct: 73  VADRLDGKNSDEYQKWLVKDQTLFTWLLSTISDDVLPRVLNCRHSHEVWEKIHKYFNSVL 132

Query: 450 -----------------TSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                                +E++ ++ SIV+SLIA+   +T+    D I
Sbjct: 133 KSRTRQLRSELKNTEKLARSVNEYLLRIKSIVNSLIAVGDVVTEQEQVDAI 183


>gb|PNX79340.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 589

 Score = 65.9 bits (159), Expect(2) = 7e-20
 Identities = 35/75 (46%), Positives = 48/75 (64%)
 Frame = +1

Query: 61  EQSPNSNDTPIVTTSVFQGVTNSSSSQHFTLALKLSIKLDDKNFLLWNQQVEGVVKMHKL 240
           E++ N+  T  + T +     +SS S    L   L+IKLDDKNFLLW+QQV GV+  H L
Sbjct: 3   EETNNTAKTNEIITDLPNTKKDSSKSG---LTHSLTIKLDDKNFLLWSQQVNGVITAHNL 59

Query: 241 HRLLVNPMIPPKYAS 285
           HR +VNP IP ++A+
Sbjct: 60  HRFVVNPQIPLQFAT 74



 Score = 58.9 bits (141), Expect(2) = 7e-20
 Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 22/111 (19%)
 Frame = +3

Query: 285 LSNRVADNVSDEFEKWLVQDQTLFT*LLSMLSRSVLPRVL----SFIIHGKFGRRFNNI- 449
           +++R+    SDE+++WL +DQTLFT LLS +S  VLPRVL    S+ +  K  + FN++ 
Sbjct: 75  VADRLDGKNSDEYQQWLFKDQTLFTWLLSTISDGVLPRVLSCKHSYEVWEKIHKYFNSVL 134

Query: 450 -----------------TSPTSEFITKVHSIVDSLIAIDKTITDTYLTDVI 551
                                +E++ +V SIV+SLIA+   +++    D I
Sbjct: 135 KSRARQLRSELKNTKKHARSVNEYLLRVKSIVNSLIAVGDNVSEQEQVDAI 185