BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00018408
         (1361 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   324   e-102
gb|PNX54637.1| histone deacetylase [Trifolium pratense]               310   2e-98
gb|KYP56497.1| Retrovirus-related Pol polyprotein from transposo...   304   3e-96
gb|PNX93473.1| retrovirus-related Pol polyprotein from transposo...   322   1e-95
gb|PNX95703.1| retrovirus-related Pol polyprotein from transposo...   318   2e-95
gb|PNY08092.1| histone deacetylase [Trifolium pratense]               323   2e-95
gb|PNX91972.1| retrovirus-related Pol polyprotein from transposo...   323   5e-95
gb|KYP37943.1| Retrovirus-related Pol polyprotein from transposo...   298   4e-94
gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]      319   1e-93
gb|KYP45673.1| Copia protein [Cajanus cajan]                          296   3e-93
gb|KYP63827.1| Copia protein [Cajanus cajan]                          291   3e-91
gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   295   9e-91
gb|KYP63857.1| Retrovirus-related Pol polyprotein from transposo...   291   7e-90
gb|KYP44504.1| hypothetical protein KK1_034024 [Cajanus cajan]        286   1e-89
gb|PNX92571.1| histone deacetylase [Trifolium pratense]               306   4e-89
gb|KYP68417.1| Retrovirus-related Pol polyprotein from transposo...   284   2e-88
gb|KYP50032.1| Retrovirus-related Pol polyprotein from transposo...   282   1e-87
gb|KYP38386.1| Retrovirus-related Pol polyprotein from transposo...   280   8e-87
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   296   8e-87
gb|KYP36155.1| Retrovirus-related Pol polyprotein from transposo...   278   2e-86

>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  324 bits (830), Expect = e-102
 Identities = 180/357 (50%), Positives = 234/357 (65%), Gaps = 8/357 (2%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K +  LYGLKQ P Q FERL+ TLL FGFK S+CD SLFT++    + YLLVY+DDI
Sbjct: 161  LVCKLNKALYGLKQAPRQWFERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDI 220

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TGNS  F + +   L ++F+L+QLG LDYFLG+EV+   NG++LLTQS YIRDLL +T
Sbjct: 221  IITGNSFQFTQQLIDQLNSIFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRT 280

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
               +A  +++PMV S KLSK+GS    D + YRSVVGAL+YATI  PELS++VNKV QFM
Sbjct: 281  NMLEANAISSPMVSSCKLSKHGSDTLADSTFYRSVVGALQYATITRPELSFAVNKVCQFM 340

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLG-HYCSSFYSSPIFPSRILWC*LGC*PL*FDYKRRE 953
            A PLE+HW AVKRILRYL+ T++ G H   +    P   S   +C         D     
Sbjct: 341  AHPLESHWNAVKRILRYLKGTMFYGLHLQPARVHQPF--SLYAYC---------DADWAA 389

Query: 954  I*DFEARL*YSASALEQATTDYLRDHQNIIFN-------RLLAQTTVEILWIQSLLHELS 1112
              D       +A  L      +    Q ++         R LAQ T E+LWIQ+LLHEL 
Sbjct: 390  DPDDRRSTSGAAIFLGPNLISWWSRKQPVVARSSTEAEYRSLAQATSEVLWIQTLLHELR 449

Query: 1113 VPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCENVMSKQRSIVHIPRADQ 1283
            VPF    I+CDNQST+++AHNP+LH+RTKHMEI+LFF+ E V++ Q ++ HIP +DQ
Sbjct: 450  VPFSTPTIYCDNQSTVSLAHNPVLHSRTKHMEINLFFVREKVLANQLTVQHIPASDQ 506


>gb|PNX54637.1| histone deacetylase [Trifolium pratense]
          Length = 389

 Score =  310 bits (793), Expect = 2e-98
 Identities = 180/356 (50%), Positives = 222/356 (62%), Gaps = 7/356 (1%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K +  LYGLKQ P Q FE+L+ TLL  GFK SRCD SLF ++ S  V Y LVY+DDI
Sbjct: 14   LVCKLNKALYGLKQAPRQWFEKLQATLLKLGFKASRCDPSLFIYSASGHVLYFLVYVDDI 73

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            ILTG SP+ I+S  + L   F+L+ LGDLDYFLG+EVK   +G+L L QS YIRD+L +T
Sbjct: 74   ILTGTSPSLIQSFITQLNQAFSLKHLGDLDYFLGIEVKSLPDGSLALNQSKYIRDILTRT 133

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
               +   ++TPM  S KLSK GS    DP +YRSVVGAL+YATI  PE+SYSVNKV QFM
Sbjct: 134  KMLNCSPVSTPMQSSCKLSKLGSNALADPFMYRSVVGALQYATITRPEISYSVNKVCQFM 193

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLGHYCSSFYSSPIFPSRILWC*LGC*PL*FDYKRREI 956
            + PLE+HW AVKRILRYL+ T+   H      SS   PS   +C         D      
Sbjct: 194  SHPLESHWTAVKRILRYLKGTMD-HHLRLHPLSSHQPPSIKAFC---------DADWASD 243

Query: 957  *DFEARL*YSASALEQATTDYLRDHQNIIFN-------RLLAQTTVEILWIQSLLHELSV 1115
             D       +A         +    Q ++         R LA  T EILWIQ+LL EL V
Sbjct: 244  PDDRRSTSGAAVYFGPNLVSWWSRKQPVVARSSAEAEYRSLAHVTAEILWIQTLLQELLV 303

Query: 1116 PFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCENVMSKQRSIVHIPRADQ 1283
            P    ++ CDNQS +A+AHNP+LHARTKHMEIDLFF+ E V++KQ  +VHIP  DQ
Sbjct: 304  PSTTPLVLCDNQSAVALAHNPVLHARTKHMEIDLFFVREKVLAKQLQVVHIPGTDQ 359


>gb|KYP56497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 391

 Score =  304 bits (778), Expect = 3e-96
 Identities = 173/378 (45%), Positives = 233/378 (61%), Gaps = 17/378 (4%)
 Frame = +3

Query: 201  MHPPLIIFHKILIVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSK 380
            + PP        +V K +  LYGLKQ P Q F+RLK TLL FGF+ S+CD SLF +    
Sbjct: 2    VQPPGFEVEDKSLVCKLNKALYGLKQAPRQWFDRLKFTLLQFGFQASKCDPSLFMYKHQD 61

Query: 381  LVAYLLVYMDDIILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLT 560
             + +LLVY+DDII+TG+S  FI+ IT  L + F+L+QLG LDYFLG+++K   + +LL+T
Sbjct: 62   QIIFLLVYVDDIIITGSSSQFIQQITDQLNSTFSLKQLGQLDYFLGIKIKHLPDKSLLMT 121

Query: 561  QSNYIRDLLLKTGTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPE 740
            QS YI+DLL KT   +A  +++PM+   KLSK G+  F DP+LYRSVVGAL+YAT+  PE
Sbjct: 122  QSKYIQDLLHKTSMAEAHPISSPMLSGCKLSKTGADLFHDPTLYRSVVGALQYATLTRPE 181

Query: 741  LSYSVNKVFQFMAAPLETHWLAVKRILRYLQ*TLYLGHYCSSFYSSPIFPSRIL----WC 908
            +S++VNKV QFMA PL++HW+AVKRILRYL+ TL  G +  S      F    +    W 
Sbjct: 182  ISFAVNKVCQFMANPLDSHWVAVKRILRYLKGTLSHGLHMKSVVLGKPFSITAMCDSDWA 241

Query: 909  *LGC*PL*FDYKRREI*DFEARL*YSASAL-------------EQATTDYLRDHQNIIFN 1049
                             D + R   S SA+             +Q T     + +     
Sbjct: 242  ----------------SDIDDRKSTSGSAIYLGPNLISWWSRKQQVTARSSTEAE----Y 281

Query: 1050 RLLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLC 1229
            R +A T+ E+ WI++LL EL VPF   V+ CDNQS +A+AHNP+ H+RTKHMEID+FF+ 
Sbjct: 282  RSIAHTSAELTWIKALLQELQVPFSTPVLLCDNQSAVAIAHNPVFHSRTKHMEIDVFFVR 341

Query: 1230 ENVMSKQRSIVHIPRADQ 1283
            E V+SKQ  + HIP  DQ
Sbjct: 342  EQVLSKQLLVYHIPVLDQ 359


>gb|PNX93473.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1181

 Score =  322 bits (824), Expect = 1e-95
 Identities = 176/377 (46%), Positives = 243/377 (64%), Gaps = 28/377 (7%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K    LYGLKQ P Q F++L  TL+ FGFK S+CD SLF ++ ++ V YLLVY+DDI
Sbjct: 809  LVCKLQKALYGLKQAPRQWFDKLATTLIQFGFKASKCDPSLFIYSHNRQVVYLLVYVDDI 868

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TG+S   ++ + + L +VF+L+QLG+LDYFLG+EVK  ++G+LLLTQS YI+DLL+KT
Sbjct: 869  IITGSSLTLVQHLVTKLDSVFSLKQLGNLDYFLGIEVKHLTDGSLLLTQSKYIKDLLVKT 928

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
               D+  +ATPM+ S KLSK GS    DP+LYRSVVG+L+YATI  PE+S++VNKV QFM
Sbjct: 929  NMIDSNPIATPMMSSCKLSKVGSDNVADPTLYRSVVGSLQYATITRPEISFAVNKVCQFM 988

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLG---------------HYCSSFYSS----------- 878
            +APLE+HW AVKRILRYL+ T ++G                YC + ++S           
Sbjct: 989  SAPLESHWTAVKRILRYLKGTSHIGLKLFPTNVHHPLSLKAYCDADWASDPDDRRSTSGA 1048

Query: 879  PIF--PSRILWC*LGC*PL*FDYKRREI*DFEARL*YSASALEQATTDYLRDHQNIIFNR 1052
             IF  P+ + W           + R++             A      +Y          R
Sbjct: 1049 AIFFGPNLVSW-----------WSRKQ----------QVVARSSTEAEY----------R 1077

Query: 1053 LLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCE 1232
             LAQ T ++LW+Q+LL+EL+VPF    I+CDNQS + +AHNP+LH+RTKHMEID+FF+ E
Sbjct: 1078 SLAQATADVLWVQTLLNELTVPFTTPTIYCDNQSAVLLAHNPVLHSRTKHMEIDVFFVRE 1137

Query: 1233 NVMSKQRSIVHIPRADQ 1283
             V++KQ ++VHIP + Q
Sbjct: 1138 KVLAKQLTVVHIPGSTQ 1154


>gb|PNX95703.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 975

 Score =  318 bits (814), Expect = 2e-95
 Identities = 179/359 (49%), Positives = 237/359 (66%), Gaps = 10/359 (2%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K +  LYGLKQ P Q F++L  TL+ FGF+ S+CD SLF  N    + YLLVY+DDI
Sbjct: 601  MVCKLNKALYGLKQAPRQWFDKLTTTLVRFGFQTSKCDPSLFILNKDNHIVYLLVYVDDI 660

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TG+S   + S+   L +VF+L+QLG LDYFLG+EVK   N  LLLTQS YIRDLL KT
Sbjct: 661  IITGSSSQLVTSLVHKLNSVFSLKQLGLLDYFLGIEVKHLPNSTLLLTQSKYIRDLLTKT 720

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
               ++  ++TPM+ + KLSK GS +F DPSLYRSVVG+L+YATI  PE++Y+VNKV QFM
Sbjct: 721  NMLESNPISTPMMSTCKLSKVGSDKFHDPSLYRSVVGSLQYATITRPEIAYAVNKVCQFM 780

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLGHYCSSF-YSSPIFPSRILWC*LGC*PL*FDYKRRE 953
            + PL++HW AVKRILRYL+ TL++G     F    PI  S  ++C         D+    
Sbjct: 781  SNPLDSHWTAVKRILRYLKETLHMGLVLYPFDVHKPI--SLKVFCDA-------DWAS-- 829

Query: 954  I*DFEARL*YSASALEQATT--DYLRDHQNIIFN-------RLLAQTTVEILWIQSLLHE 1106
              D + R   S +A+   T+   +    Q ++         R  AQ T  +LWIQ+LL E
Sbjct: 830  --DPDDRRSTSGAAIFFGTSLVSWWSRKQQVVARSSTEAEYRSRAQATAYVLWIQTLLKE 887

Query: 1107 LSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCENVMSKQRSIVHIPRADQ 1283
            L++PF   +I+CDNQS + +AHNPILH RTKHMEIDLFF+ E V++KQ +IVHIP  +Q
Sbjct: 888  LTIPFSQPIIYCDNQSAVLLAHNPILHTRTKHMEIDLFFVREKVVAKQLTIVHIPGIEQ 946


>gb|PNY08092.1| histone deacetylase [Trifolium pratense]
          Length = 1339

 Score =  323 bits (827), Expect = 2e-95
 Identities = 182/377 (48%), Positives = 242/377 (64%), Gaps = 28/377 (7%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K +  LYGLKQ P Q F++L  TLL FGFK S+CD SLFT++  + V YLLVY+DDI
Sbjct: 967  LVCKLNKALYGLKQAPRQWFDKLTTTLLQFGFKASKCDPSLFTYSKDRQVVYLLVYVDDI 1026

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TG+S   ++++   L +VF+L+QLG+LDYFLG+EV++ S+ +LLLTQS YI+DLL+KT
Sbjct: 1027 IITGSSITLVQTLVEKLDSVFSLKQLGNLDYFLGIEVQQLSDNSLLLTQSKYIKDLLVKT 1086

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
               + K +ATPM+ S KLSK GS    D +LYRSVVG+L+YATI  PE+S++VNKV QFM
Sbjct: 1087 NMLECKPIATPMMSSCKLSKVGSNTVADTTLYRSVVGSLQYATITRPEISFAVNKVCQFM 1146

Query: 777  AAPLETHWLAVKRILRYLQ*T---------------LYLGHYCSSFYSS----------- 878
            +APLETHW+AVKRILRYL+ T               L L  +C + ++S           
Sbjct: 1147 SAPLETHWIAVKRILRYLKGTIDQGLKLLPTDIHHPLPLRVFCDADWASDPDDRRSTSGA 1206

Query: 879  PIF--PSRILWC*LGC*PL*FDYKRREI*DFEARL*YSASALEQATTDYLRDHQNIIFNR 1052
             IF  P+ I W           + R++             A      +Y          R
Sbjct: 1207 AIFFGPNLISW-----------WSRKQ----------QVVARSSTEAEY----------R 1235

Query: 1053 LLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCE 1232
             LAQ T + LW+Q+LL EL+VPF   VI+CDNQS + +AHNPILH+RTKHMEIDLFF+ E
Sbjct: 1236 SLAQATADALWVQTLLKELTVPFLAPVIYCDNQSAVLLAHNPILHSRTKHMEIDLFFVRE 1295

Query: 1233 NVMSKQRSIVHIPRADQ 1283
             V++KQ S++HIP  DQ
Sbjct: 1296 KVLAKQLSVIHIPGTDQ 1312


>gb|PNX91972.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1516

 Score =  323 bits (828), Expect = 5e-95
 Identities = 180/358 (50%), Positives = 240/358 (67%), Gaps = 9/358 (2%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K +  LYGLKQ P Q F+RL  TLL FGFK S+CD SLFT++ +K V YLLVY+DDI
Sbjct: 1138 LVCKLNKALYGLKQAPRQWFDRLTTTLLQFGFKASKCDPSLFTYSQNKQVVYLLVYVDDI 1197

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TG+S   ++++   L ++F+L+QLGDL+YFLG+EVK+  + +LLLTQ  YI+DLLLKT
Sbjct: 1198 IITGSSSTLVQTLVQKLDSIFSLKQLGDLEYFLGIEVKRSPDSSLLLTQGKYIKDLLLKT 1257

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
               D K + TPM+ S KLSK GS    D +LYRSVVG+L+YATI  PE+S++VNKV QFM
Sbjct: 1258 NMLDCKPINTPMMSSCKLSKVGSTGMTDATLYRSVVGSLQYATITRPEISFAVNKVCQFM 1317

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLGHYCSSFYSSPIFPSRILWC*LGC*PL*FDYKRREI 956
            +APLETHW+AVKRILRYL+ T+  G   S        P  + +C         D+     
Sbjct: 1318 SAPLETHWIAVKRILRYLKGTIDFGLKISPTPVHHPLPLNV-FCDA-------DWAA--- 1366

Query: 957  *DFEARL*YSASAL---EQATTDYLRDHQNIIFN------RLLAQTTVEILWIQSLLHEL 1109
             D + R   S +AL       + + R  Q +  +      R LAQ T + LW+Q+LL EL
Sbjct: 1367 -DPDDRRSTSGAALFFGPNLISWWSRKQQVVARSSTEAEYRSLAQATADTLWVQTLLKEL 1425

Query: 1110 SVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCENVMSKQRSIVHIPRADQ 1283
            +VPF   V++CDN S + +AHNP+LH+RTKHMEIDLFF+ E V++KQ S++HIP  DQ
Sbjct: 1426 TVPFTAPVVYCDNLSAVHLAHNPVLHSRTKHMEIDLFFVREKVLAKQLSVLHIPGTDQ 1483


>gb|KYP37943.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 390

 Score =  298 bits (764), Expect = 4e-94
 Identities = 170/357 (47%), Positives = 225/357 (63%), Gaps = 8/357 (2%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K    +Y LKQ P   F++LK TL +  F+ S+CD SLF ++ +  V Y+LVY+DDI
Sbjct: 14   LVCKLHKAIYDLKQAPRAWFDKLKATLFHLNFQISKCDPSLFVYSHANNVIYILVYVDDI 73

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TGN+ AF+++I S L + F+L+ LG LDYFLG+EVK  S+G+L LTQS Y+ DLL +T
Sbjct: 74   IITGNNTAFLRNIVSQLNSAFSLKDLGRLDYFLGIEVKSNSDGSLTLTQSKYVLDLLNRT 133

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
              +++  + +PMV   KLSK GS +F D SLYRSVVGAL+YATI  PE+S+SVNKV QFM
Sbjct: 134  NMENSNSITSPMVSGCKLSKSGSDKFLDVSLYRSVVGALQYATITRPEISFSVNKVCQFM 193

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLG-HYCSSFYSSPIFPSRILWC*LGC*PL*FDYKRRE 953
            + PLE HW AVKRILRYL+ T+ LG H   +  +SP+                +D     
Sbjct: 194  SNPLEQHWSAVKRILRYLKGTMSLGLHLQPTPPNSPLSIHAY-----------YDVDWAS 242

Query: 954  I*DFEARL*YSASALEQATTDYLRDHQNIIFN-------RLLAQTTVEILWIQSLLHELS 1112
              D       +A  +      +    Q I+         R LA  TVE+LWIQ+LL EL 
Sbjct: 243  DPDDRRSTSGAAIFVGPNLISWWSKKQTIVARSSIEAEYRSLALATVEVLWIQTLLSELH 302

Query: 1113 VPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCENVMSKQRSIVHIPRADQ 1283
            V     VI+CDN STIA+AHNP+LHARTKHME+DLFF+ E V +    +VH+P  DQ
Sbjct: 303  VSHYSPVIYCDNMSTIALAHNPVLHARTKHMELDLFFVREKVAANLLHVVHVPAIDQ 359


>gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1489

 Score =  319 bits (817), Expect = 1e-93
 Identities = 174/377 (46%), Positives = 244/377 (64%), Gaps = 28/377 (7%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K +  LYGLKQ P Q F++L +TL+ FGFK S+CD SLF ++ +  + YLLVY+DDI
Sbjct: 1117 LVCKLNKALYGLKQAPRQWFDKLTSTLIQFGFKASKCDPSLFIYSKNCQIVYLLVYVDDI 1176

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TG+SP  ++ + + L +VF+L+QLG+L+YFLG+EVK  S+G+LLLTQ+ YI+DLL+KT
Sbjct: 1177 IITGSSPDLVQHLVNKLDSVFSLKQLGELEYFLGIEVKNLSDGSLLLTQTKYIKDLLIKT 1236

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
               D+  +ATPM+ S KLSK GS    D +LYRSVVG+L+YATI+ PE+S++VNKV QFM
Sbjct: 1237 NMLDSNPIATPMMSSCKLSKIGSDNMNDATLYRSVVGSLQYATISRPEISFAVNKVCQFM 1296

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLG---------------HYCSSFYSS----------- 878
            +APLE+HW+AVKRILRYL+ T +LG                +C + ++S           
Sbjct: 1297 SAPLESHWVAVKRILRYLKGTSHLGLRLFPANINHPLSLRAFCDADWASDPDDRRSTSGA 1356

Query: 879  PIF--PSRILWC*LGC*PL*FDYKRREI*DFEARL*YSASALEQATTDYLRDHQNIIFNR 1052
             IF  P+ I W           + R++             A      +Y          R
Sbjct: 1357 AIFFGPNLISW-----------WSRKQ----------QVVARSSTEAEY----------R 1385

Query: 1053 LLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCE 1232
             LAQ T ++LW+Q+LL EL+VPF    ++CDNQS + +AHNP+LH+RTKHMEIDLFF+ E
Sbjct: 1386 SLAQITADVLWLQTLLKELTVPFTTPTVYCDNQSAVLLAHNPVLHSRTKHMEIDLFFVRE 1445

Query: 1233 NVMSKQRSIVHIPRADQ 1283
             V++KQ +++HIP   Q
Sbjct: 1446 KVIAKQLTVLHIPGTTQ 1462


>gb|KYP45673.1| Copia protein [Cajanus cajan]
          Length = 390

 Score =  296 bits (758), Expect = 3e-93
 Identities = 168/377 (44%), Positives = 226/377 (59%), Gaps = 28/377 (7%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K    +YGLKQ P   F++LK TL +  F+ ++CD SLF ++ +  V Y+LVY+DDI
Sbjct: 14   LVCKLHKAIYGLKQAPRAWFDKLKATLFHLNFQINKCDPSLFVYSHANNVIYILVYVDDI 73

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+ GN+  F+++I S L + F+L+ LG LDYFLG+EVK  S+G+L LTQS YI DLL +T
Sbjct: 74   IINGNNTTFLRNIVSQLNSAFSLKDLGRLDYFLGIEVKPNSDGSLTLTQSKYIHDLLNRT 133

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
              +++  + +PMV   KLSK GS +F D SLYRSVVGAL+YATI  PE+S+SVNKV QFM
Sbjct: 134  NMENSNSITSPMVSGCKLSKSGSDKFLDVSLYRSVVGALQYATITRPEVSFSVNKVCQFM 193

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLG---------------HYCSSFYSSP---------- 881
            + PLE HW AVKRILRYL+ T+ LG                YC + ++S           
Sbjct: 194  SNPLEHHWSAVKRILRYLKGTMSLGLHLQPAPTNSPLSIHAYCDADWASDPDDRRSTSGA 253

Query: 882  ---IFPSRILWC*LGC*PL*FDYKRREI*DFEARL*YSASALEQATTDYLRDHQNIIFNR 1052
               + P+ I W           + +++I            A      +Y          R
Sbjct: 254  AIFVGPNLISW-----------WSKKQI----------VVARSSTEAEY----------R 282

Query: 1053 LLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCE 1232
             LA  T E+LWIQ+LL EL V     VI+CDN ST+A+AHNP+LHARTKHME+DLFF+ E
Sbjct: 283  SLALATAEVLWIQTLLSELHVSHHSPVIYCDNMSTVALAHNPVLHARTKHMELDLFFVRE 342

Query: 1233 NVMSKQRSIVHIPRADQ 1283
             V +    +VH+P  DQ
Sbjct: 343  KVAANLLHVVHVPATDQ 359


>gb|KYP63827.1| Copia protein [Cajanus cajan]
          Length = 382

 Score =  291 bits (744), Expect = 3e-91
 Identities = 164/357 (45%), Positives = 223/357 (62%), Gaps = 8/357 (2%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +VYK    +YGLKQ P   F++LK TL    F+ S+CD SLF ++    V Y+LVY+DDI
Sbjct: 14   LVYKLHKAIYGLKQAPHAWFDKLKATLFQLNFQISKCDPSLFVYSHGNTVIYILVYVDDI 73

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TGN+ + ++SI S L + F+L+ LG LDYFLG+EVK   +G+L LTQS YIRDLL +T
Sbjct: 74   IITGNNSSVLQSIISQLNSAFSLKDLGRLDYFLGIEVKSNFDGSLTLTQSKYIRDLLNRT 133

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
              +++  +++PMV S K        F D SLYRSVVGAL+YATI  P++S+SVNKV QFM
Sbjct: 134  NMENSNSISSPMVSSEK--------FLDVSLYRSVVGALQYATITRPKISFSVNKVCQFM 185

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLG-HYCSSFYSSPIFPSRILWC*LGC*PL*FDYKRRE 953
            + PLE HW A+KRILRYLQ T++LG H   + Y SP+  S   +C         D     
Sbjct: 186  SNPLEQHWSAIKRILRYLQGTMFLGLHLHPTPYDSPL--SIHAYC---------DADWAS 234

Query: 954  I*DFEARL*YSASALEQATTDYLRDHQNIIFN-------RLLAQTTVEILWIQSLLHELS 1112
              D +     +A  +      +    Q ++         R LA  T E++WIQ+LL EL 
Sbjct: 235  DPDDQKSTSSAAIFVGPNLISWWSKKQTVVARSSTEIEYRSLALATAEVMWIQTLLSELH 294

Query: 1113 VPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCENVMSKQRSIVHIPRADQ 1283
            V     V++CDN ST+A+AHNP+LHARTKH+E+DLFF+ E V +    +VH+P  DQ
Sbjct: 295  VSHHSPVVYCDNMSTVALAHNPVLHARTKHIELDLFFVREKVAANLLHVVHVPAIDQ 351


>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  295 bits (754), Expect = 9e-91
 Identities = 164/377 (43%), Positives = 229/377 (60%), Gaps = 28/377 (7%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K    +YGLKQ P   F++LK TL    F+ S+CD SLF ++    V Y+LVY+DDI
Sbjct: 162  LVCKLHKAIYGLKQAPRAWFDKLKTTLFQLNFQISKCDPSLFVYSHDNNVIYILVYVDDI 221

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TGN+ + +++I + L + F+L+ LG LD+FLG+EVK  ++G+L LTQS YIRDLL +T
Sbjct: 222  IITGNNSSTLQNIIAQLNSAFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRT 281

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
              +++  +++PMV   KLS+ GS +F D +LYRSVVGAL+YATI  PE+S+SVNKV QFM
Sbjct: 282  NMENSNPISSPMVSGCKLSRTGSEKFLDVTLYRSVVGALQYATITRPEISFSVNKVCQFM 341

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLG---------------HYCSSFYSSP---------- 881
            + PLE HW AVKRILRYL+ T++LG                YC + ++S           
Sbjct: 342  SNPLEQHWSAVKRILRYLKGTMFLGLHLQPAPSNSPLSIRAYCDADWASDPDDRRSTSGA 401

Query: 882  ---IFPSRILWC*LGC*PL*FDYKRREI*DFEARL*YSASALEQATTDYLRDHQNIIFNR 1052
               + P+ I W           + +++          +  A   A  +Y          R
Sbjct: 402  SIFVGPNLISW-----------WSKKQ----------TVVARSSAEAEY----------R 430

Query: 1053 LLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCE 1232
             LA  T E+LWIQ+LL EL V     V++CDN ST+A+AHNP+LHARTKHME+DLFF+ E
Sbjct: 431  SLALATAEVLWIQTLLSELHVSHHTPVVYCDNMSTVALAHNPVLHARTKHMELDLFFVRE 490

Query: 1233 NVMSKQRSIVHIPRADQ 1283
             V +    +VH+P  DQ
Sbjct: 491  KVAANSLHVVHVPAIDQ 507


>gb|KYP63857.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 490

 Score =  291 bits (744), Expect = 7e-90
 Identities = 164/357 (45%), Positives = 223/357 (62%), Gaps = 8/357 (2%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +VYK    +YGLKQ P   F++LK TL    F+ S+CD SLF ++    V Y+LVY+DDI
Sbjct: 122  LVYKLHKAIYGLKQAPHAWFDKLKATLFQLNFQISKCDPSLFVYSHGNTVIYILVYVDDI 181

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TGN+ + ++SI S L + F+L+ LG LDYFLG+EVK   +G+L LTQS YIRDLL +T
Sbjct: 182  IITGNNSSVLQSIISQLNSAFSLKDLGRLDYFLGIEVKSNFDGSLTLTQSKYIRDLLNRT 241

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
              +++  +++PMV S K        F D SLYRSVVGAL+YATI  P++S+SVNKV QFM
Sbjct: 242  NMENSNSISSPMVSSEK--------FLDVSLYRSVVGALQYATITRPKISFSVNKVCQFM 293

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLG-HYCSSFYSSPIFPSRILWC*LGC*PL*FDYKRRE 953
            + PLE HW A+KRILRYLQ T++LG H   + Y SP+  S   +C         D     
Sbjct: 294  SNPLEQHWSAIKRILRYLQGTMFLGLHLHPTPYDSPL--SIHAYC---------DADWAS 342

Query: 954  I*DFEARL*YSASALEQATTDYLRDHQNIIFN-------RLLAQTTVEILWIQSLLHELS 1112
              D +     +A  +      +    Q ++         R LA  T E++WIQ+LL EL 
Sbjct: 343  DPDDQKSTSSAAIFVGPNLISWWSKKQTVVARSSTEIEYRSLALATAEVMWIQTLLSELH 402

Query: 1113 VPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCENVMSKQRSIVHIPRADQ 1283
            V     V++CDN ST+A+AHNP+LHARTKH+E+DLFF+ E V +    +VH+P  DQ
Sbjct: 403  VSHHSPVVYCDNMSTVALAHNPVLHARTKHIELDLFFVREKVAANLLHVVHVPAIDQ 459


>gb|KYP44504.1| hypothetical protein KK1_034024 [Cajanus cajan]
          Length = 367

 Score =  286 bits (732), Expect = 1e-89
 Identities = 159/336 (47%), Positives = 215/336 (63%), Gaps = 8/336 (2%)
 Frame = +3

Query: 300  RLKNTLL-NFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDIILTGNSPAFIKSITSMLYNV 476
            R KN L  +F F+ S+CD SLF ++    + Y+LVY+DDII+TGN+   ++++ S L++ 
Sbjct: 12   RSKNPLCPSFTFQASKCDPSLFVYSVDNNIIYVLVYVDDIIITGNNATTLQTLVSRLHSA 71

Query: 477  FALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKTGTQDAKQLATPMVFSSKLSK 656
            F+L+ LGDLDYFLG+EVK QS+G++ LTQS YIRDLL +T  + AK +++PMV   KLSK
Sbjct: 72   FSLKDLGDLDYFLGIEVKNQSDGSITLTQSKYIRDLLNRTDMEAAKPISSPMVSGCKLSK 131

Query: 657  YGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFMAAPLETHWLAVKRILRYLQ* 836
             GS +  DPSLYRSVVGAL+YATI  PE+S+SVNKV QFM+ PLE HW+AVKRILRYL+ 
Sbjct: 132  LGSEKVFDPSLYRSVVGALQYATITRPEISFSVNKVCQFMSQPLEQHWIAVKRILRYLKG 191

Query: 837  TLYLGHYCSSFYSSPIFPSRILWC*LGC*PL*FDYKRREI*DFEARL*YSASALEQATTD 1016
            T+  G +     ++  F S   +C         D       D       ++  L      
Sbjct: 192  TISWGLHLQPATTTSSF-SIHTYC---------DADWASDPDDRRSTSGASIFLGPNLVS 241

Query: 1017 YLRDHQNIIFN-------RLLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHN 1175
            +    Q ++         R LA    E++WIQ+LL EL V     VI CDN ST+A+AHN
Sbjct: 242  WWSKKQTVVARSSTEAEYRSLALAAAEVMWIQTLLSELKVHHSTPVIFCDNMSTVALAHN 301

Query: 1176 PILHARTKHMEIDLFFLCENVMSKQRSIVHIPRADQ 1283
            P+LHARTKHME+DLFF+ E V +K+  +VH+P  DQ
Sbjct: 302  PVLHARTKHMELDLFFVREKVAAKRLQVVHVPAIDQ 337


>gb|PNX92571.1| histone deacetylase [Trifolium pratense]
          Length = 1488

 Score =  306 bits (784), Expect = 4e-89
 Identities = 176/356 (49%), Positives = 224/356 (62%), Gaps = 7/356 (1%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K    LYGLKQ P Q FERL++TLL  GFK+S+CD SLF ++++    YLLVY+DDI
Sbjct: 1114 LVCKLHKALYGLKQAPRQWFERLQSTLLLLGFKSSKCDPSLFVYSSATDTIYLLVYVDDI 1173

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+T N+   + S  S L   F+L+ LG+LDYFLG+EV   S+G+LLLTQS Y+RDLL +T
Sbjct: 1174 IITSNNTTLLHSTISKLNKAFSLKHLGNLDYFLGIEVHHLSSGSLLLTQSKYLRDLLTRT 1233

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
               D+  ++TPM  + KL+K GS    DP +YRSVVGAL+YATI  PE+S+SVNK  QFM
Sbjct: 1234 HMLDSSPVSTPMQSTCKLTKLGSSPLDDPFMYRSVVGALQYATITRPEISFSVNKACQFM 1293

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLGHYCSSFYSSPIFPSRILWC*LGC*PL*FDYKRREI 956
            + PLETHW+AVKRILRYL+ TL  G   S     P  PS   +C         D      
Sbjct: 1294 SHPLETHWIAVKRILRYLKGTLDHGLLLSPAL-PPKPPSLKAFC---------DADWASD 1343

Query: 957  *DFEARL*YSASALEQATTDYLRDHQNIIFN-------RLLAQTTVEILWIQSLLHELSV 1115
             D       +A         +    Q ++         R LA  T E+LWIQ+LL EL V
Sbjct: 1344 PDDRRSTSGAAIYFGPNLVSWWSKKQPVVARSSTEAEYRSLAHATAELLWIQTLLTELHV 1403

Query: 1116 PFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCENVMSKQRSIVHIPRADQ 1283
            PF    I CDNQS + +AHNPI+H+RTKHMEIDLFF+ E V+SKQ S++HIP  DQ
Sbjct: 1404 PFAAPTILCDNQSAVMLAHNPIMHSRTKHMEIDLFFVREKVISKQLSVLHIPGTDQ 1459


>gb|KYP68417.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 394

 Score =  284 bits (726), Expect = 2e-88
 Identities = 165/377 (43%), Positives = 225/377 (59%), Gaps = 28/377 (7%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K    +YGLKQ P   F++LK+TLL   F  S+CD SLF ++ +  V Y+LVY+DDI
Sbjct: 31   LVCKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFVYSHANNVIYILVYVDDI 90

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TGN+   + ++ S L+++F+L+ LGDLD+FLG+EVK Q +G+L+LTQS YIRDLL +T
Sbjct: 91   IITGNNSTILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRT 150

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
              + +K +++PMV  SKLSK GS  F D SLYRSVVGAL+YATI  PE+S+SVNKV QFM
Sbjct: 151  DMEGSKPISSPMVSGSKLSKAGSEDFLDASLYRSVVGALQYATIIRPEISFSVNKVCQFM 210

Query: 777  AAPLETHWLAVKRILRYLQ*T---------------LYLGHYCSSFYSSP---------- 881
            + PL  HW AVKRILRYL+ T               L +  YC + ++S           
Sbjct: 211  SHPLTHHWAAVKRILRYLKGTTSWGLRLQPASSPSSLSIHAYCDADWASDPDDRRSTSGA 270

Query: 882  ---IFPSRILWC*LGC*PL*FDYKRREI*DFEARL*YSASALEQATTDYLRDHQNIIFNR 1052
               + P+ + W           + +++I             + ++TT+           R
Sbjct: 271  SIFLGPNLVSW-----------WSKKQI------------VVARSTTE--------AEYR 299

Query: 1053 LLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCE 1232
             LA  T E+ WIQ+LL EL V     +I CDN ST+A+AHNP+LHARTKHME+DLFF   
Sbjct: 300  SLALATTEVTWIQTLLSELKVNHSTPIIFCDNLSTVALAHNPVLHARTKHMELDLFF--- 356

Query: 1233 NVMSKQRSIVHIPRADQ 1283
                     VH+P  DQ
Sbjct: 357  ---------VHVPAIDQ 364


>gb|KYP50032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 392

 Score =  282 bits (721), Expect = 1e-87
 Identities = 159/377 (42%), Positives = 223/377 (59%), Gaps = 28/377 (7%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K   +LYGLKQ P   F++L + LL  GF  S+CD SLF F+TS +  ++LVY+DDI
Sbjct: 15   LVCKLHKSLYGLKQAPRAWFDKLTSVLLKLGFNKSKCDPSLFIFSTSTVTIFMLVYVDDI 74

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            ILTGNSP+ ++   + L ++F+L+ LG LDYFLG+EVK  S G LLL+Q+ YI DLL K 
Sbjct: 75   ILTGNSPSMLQKFVTQLNDIFSLKDLGALDYFLGIEVKSLSQGKLLLSQAKYITDLLTKV 134

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
              +D+K ++TPM+   +L+K G+P F DP+LYRSVVGAL+YATI  PE+++SVNKV QFM
Sbjct: 135  KMEDSKSISTPMIGGQQLAKEGTP-FDDPTLYRSVVGALQYATITRPEIAFSVNKVSQFM 193

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLGHYCS----------------SFYSSP--------- 881
             +P+E HW  VKRILRYL+ T+  G   S                 + S P         
Sbjct: 194  CSPMEEHWKVVKRILRYLKGTVGHGLVFSPAKHIDPFNLTAFTDADWASDPNDRRSTSAA 253

Query: 882  ---IFPSRILWC*LGC*PL*FDYKRREI*DFEARL*YSASALEQATTDYLRDHQNIIFNR 1052
               + P+ + W           + ++++    +       AL QA T+ L          
Sbjct: 254  CIYLGPNLVSW-----------WSKKQLLVARSSTEAEYRALAQAITEVL---------- 292

Query: 1053 LLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCE 1232
                      WIQSLL EL VP     + CDNQST+A++HN +LH+R+KHME+D+FF+ E
Sbjct: 293  ----------WIQSLLKELKVPLNTPTVLCDNQSTVALSHNLVLHSRSKHMELDIFFVRE 342

Query: 1233 NVMSKQRSIVHIPRADQ 1283
             V++K  ++ HIP   Q
Sbjct: 343  KVLNKSLNVSHIPAQHQ 359


>gb|KYP38386.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 399

 Score =  280 bits (716), Expect = 8e-87
 Identities = 160/377 (42%), Positives = 221/377 (58%), Gaps = 28/377 (7%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K   +LYGLKQ P   F++L + LL  GF  S+CD SLFTF+ S +  ++LVY+DDI
Sbjct: 22   LVCKLHKSLYGLKQAPRAWFDKLTSVLLTLGFSKSKCDPSLFTFSISNVTVFMLVYVDDI 81

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            ILTGNS + I+   + L  +F+L+ LG LDYFLG+EVK   +G LLL+Q  YI DLL K 
Sbjct: 82   ILTGNSSSLIQKFVTQLNAIFSLKDLGTLDYFLGIEVKSLPHGQLLLSQDKYIIDLLTKV 141

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
              +DAK ++TPM+   +L+K G+  F DP+LYRSVVGAL+YATI  PE+++SVNKV QFM
Sbjct: 142  KMEDAKGISTPMIGGQQLAKDGT-LFDDPTLYRSVVGALQYATITRPEIAFSVNKVSQFM 200

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLGHYCS----------------SFYSSP--------- 881
             +P+E HW  VKRILRYL+ T+  G   S                 + S P         
Sbjct: 201  CSPMEEHWKVVKRILRYLKGTVNHGLVFSPAKHTAPFNLTAFTDADWASDPNDRRSTSAA 260

Query: 882  ---IFPSRILWC*LGC*PL*FDYKRREI*DFEARL*YSASALEQATTDYLRDHQNIIFNR 1052
               + P+ + W           + ++++    +       AL QA T+            
Sbjct: 261  CIYLGPNLVSW-----------WSKKQLLVARSSTEAEYRALAQAVTE------------ 297

Query: 1053 LLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCE 1232
                    +LWIQSLL EL+VP     + CDNQST+A++HNP+LHAR+KHME+D+FF+ E
Sbjct: 298  --------VLWIQSLLKELTVPLNTPTVLCDNQSTVALSHNPVLHARSKHMELDIFFVRE 349

Query: 1233 NVMSKQRSIVHIPRADQ 1283
             V++K   + HIP   Q
Sbjct: 350  KVLNKSLVVSHIPAQHQ 366


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  296 bits (758), Expect = 8e-87
 Identities = 166/377 (44%), Positives = 228/377 (60%), Gaps = 28/377 (7%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K    +YGLKQ P   F++LK+TLL   F  S+CD SLF ++    V Y+LVY+DDI
Sbjct: 698  LVCKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNVIYILVYVDDI 757

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TGN+ + + ++ S L+++F+L+ LGDLD+FLG+EVK Q +G+L+LTQS YIRDLL +T
Sbjct: 758  IITGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQSKYIRDLLNRT 817

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
              + +K +++PM+  SKLSK GS  F D SLYRSVVGAL+YATI  PE+S+SVNKV QFM
Sbjct: 818  DMEGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEISFSVNKVCQFM 877

Query: 777  AAPLETHWLAVKRILRYLQ*T---------------LYLGHYCSSFYSSP---------- 881
            + PL  HW AVKRILRYL+ T               L +  YC + ++S           
Sbjct: 878  SHPLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASDPDDRRSTSGA 937

Query: 882  ---IFPSRILWC*LGC*PL*FDYKRREI*DFEARL*YSASALEQATTDYLRDHQNIIFNR 1052
               + P+ + W           + +++          +  A      +Y          R
Sbjct: 938  SIFLGPNLVSW-----------WSKKQ----------TVVARSSTEAEY----------R 966

Query: 1053 LLAQTTVEILWIQSLLHELSVPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCE 1232
             LA  T E+ WIQ+LL EL V     +I CDN ST+A+AHNP+LHARTKHME+DLFF+ E
Sbjct: 967  SLALATTEVTWIQTLLSELKVTHSTPIIFCDNLSTVALAHNPVLHARTKHMELDLFFVRE 1026

Query: 1233 NVMSKQRSIVHIPRADQ 1283
             V +K   +VH+P  DQ
Sbjct: 1027 KVAAKCLQVVHVPAIDQ 1043


>gb|KYP36155.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 390

 Score =  278 bits (712), Expect = 2e-86
 Identities = 158/357 (44%), Positives = 219/357 (61%), Gaps = 8/357 (2%)
 Frame = +3

Query: 237  IVYKPDPNLYGLKQVPVQ*FERLKNTLLNFGFKNSRCDTSLFTFNTSKLVAYLLVYMDDI 416
            +V K    +YGLKQ P   F++LK TL    F+ S+CD SL  ++    V Y+LVY+DDI
Sbjct: 14   LVCKLHKAIYGLKQAPRAWFDKLKATLFQLNFQISKCDPSLLVYSHGNHVIYILVYVDDI 73

Query: 417  ILTGNSPAFIKSITSMLYNVFALEQLGDLDYFLGLEVKKQSNGNLLLTQSNYIRDLLLKT 596
            I+TGN+   ++SI S L + F+ + LG LDYFLG+EVK   +G+L LTQS YIR LL + 
Sbjct: 74   IITGNNSYVLQSIISQLNSAFSFKDLGRLDYFLGIEVKSNYDGSLTLTQSKYIRYLLNRP 133

Query: 597  GTQDAKQLATPMVFSSKLSKYGSPRFGDPSLYRSVVGALKYATIAHPELSYSVNKVFQFM 776
              +++  +++PM+   KLSK GS +F D SLYRSVVGAL+YATI  PE+S+S+NKV QFM
Sbjct: 134  NMENSNPISSPMISGCKLSKTGSEKFHDVSLYRSVVGALQYATITRPEISFSINKVCQFM 193

Query: 777  AAPLETHWLAVKRILRYLQ*TLYLG-HYCSSFYSSPIFPSRILWC*LGC*PL*FDYKRRE 953
            + PLE HW AVK ILRYL+ T++LG H   +  +SP+  S   +C         D     
Sbjct: 194  SNPLEQHWSAVKCILRYLKGTMFLGLHLHPAPSNSPL--SIHAYC---------DVDWAS 242

Query: 954  I*DFEARL*YSASALEQATTDYLRDHQNIIFN-------RLLAQTTVEILWIQSLLHELS 1112
              D       ++  +      +    Q ++         R LA  T E++WIQ+LL E  
Sbjct: 243  NPDPRRSTSGASIFVGPNLISWWSKKQTVVARSSTEAEYRSLALATAEVMWIQTLLSEQQ 302

Query: 1113 VPFRHSVIHCDNQSTIAMAHNPILHARTKHMEIDLFFLCENVMSKQRSIVHIPRADQ 1283
            V     V++CDN ST+A+AHNP+LHARTKHM++DLFF+ E V +    +VH+P  DQ
Sbjct: 303  VSHHTPVVYCDNMSTVALAHNPVLHARTKHMKLDLFFVREKVAAYLLQVVHVPAIDQ 359