BLASTX nr result
ID: Astragalus24_contig00018114
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus24_contig00018114
(471 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PNX95321.1| retroelement pol polyprotein-like [Trifolium prat... 54 2e-17
gb|PNX96222.1| retrovirus-related Pol polyprotein from transposo... 55 3e-15
gb|KYP42518.1| Retrovirus-related Pol polyprotein from transposo... 49 1e-12
gb|KYP64168.1| Retrovirus-related Pol polyprotein from transposo... 49 8e-12
gb|KYP65664.1| Retrovirus-related Pol polyprotein from transposo... 44 1e-10
dbj|GAU35639.1| hypothetical protein TSUD_394790 [Trifolium subt... 47 2e-10
gb|KYP36220.1| Copia protein [Cajanus cajan] >gi|1012357536|gb|K... 52 2e-10
gb|KYP33474.1| Retrovirus-related Pol polyprotein from transposo... 46 4e-09
gb|KYP52818.1| Retrovirus-related Pol polyprotein from transposo... 43 4e-08
gb|KYP53968.1| Retrovirus-related Pol polyprotein from transposo... 42 1e-07
gb|PKH48991.1| hypothetical protein CRG98_050339, partial [Punic... 48 8e-07
gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsi... 45 2e-06
>gb|PNX95321.1| retroelement pol polyprotein-like [Trifolium pratense]
Length = 1433
Score = 53.9 bits (128), Expect(3) = 2e-17
Identities = 22/38 (57%), Positives = 30/38 (78%)
Frame = -2
Query: 116 ILYTDLWGRYHTASYQGCHYFLTIIIDYFKRGTCEYLM 3
+++ DLWG+Y T+S+ GCHYFLTI+ DY RGT YL+
Sbjct: 553 LIHCDLWGKYRTSSHSGCHYFLTIVDDY-SRGTWVYLL 589
Score = 46.2 bits (108), Expect(3) = 2e-17
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -1
Query: 183 CH*SKQCRLPFYVSSNKTEKSFDLIH 106
CH SKQCRLPF++S NK E FDLIH
Sbjct: 530 CHRSKQCRLPFHISYNKAENPFDLIH 555
Score = 36.2 bits (82), Expect(3) = 2e-17
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -3
Query: 301 EVNKVI*HARLGHRLAKVV*LLSQLLNCSFNSNKVHC 191
E N + HAR+GH +V+ +SQL+N +F SNK+ C
Sbjct: 490 EDNTALWHARMGHPSPQVMQRISQLVNFNFCSNKLRC 526
>gb|PNX96222.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 1369
Score = 55.1 bits (131), Expect(3) = 3e-15
Identities = 23/38 (60%), Positives = 31/38 (81%)
Frame = -2
Query: 116 ILYTDLWGRYHTASYQGCHYFLTIIIDYFKRGTCEYLM 3
++++DLWGRYHTA++ G HYFLTI+ DY RGT YL+
Sbjct: 484 LIHSDLWGRYHTAAHDGSHYFLTIVDDY-SRGTWVYLL 520
Score = 40.4 bits (93), Expect(3) = 3e-15
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = -1
Query: 183 CH*SKQCRLPFYVSSNKTEKSFDLIH 106
CH SKQCRLPF S NK E+ F LIH
Sbjct: 461 CHKSKQCRLPFPQSINKAEEPFSLIH 486
Score = 33.1 bits (74), Expect(3) = 3e-15
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 280 HARLGHRLAKVV*LLSQLLNCSFNSNKV 197
H+RLGH ++ + LS LL C+FN NK+
Sbjct: 428 HSRLGHPSSQALQHLSHLLRCNFNFNKI 455
>gb|KYP42518.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 769
Score = 48.9 bits (115), Expect(3) = 1e-12
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = -2
Query: 116 ILYTDLWGRYHTASYQGCHYFLTIIIDYFKRGTCEYLM 3
+++ DLWG+YHTAS+ G HYFLT I+D F R YL+
Sbjct: 482 LIHCDLWGKYHTASHNGSHYFLT-IVDDFTRAVWIYLL 518
Score = 42.4 bits (98), Expect(3) = 1e-12
Identities = 18/26 (69%), Positives = 20/26 (76%)
Frame = -1
Query: 183 CH*SKQCRLPFYVSSNKTEKSFDLIH 106
CH SKQCRLPF ++ NK K FDLIH
Sbjct: 459 CHRSKQCRLPFSLNYNKVSKVFDLIH 484
Score = 28.9 bits (63), Expect(3) = 1e-12
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = -3
Query: 280 HARLGHRLAKVV*LLSQLLNCSFN-SNKVHC 191
HAR+GH +V+ LS +++ SFN +NK+ C
Sbjct: 425 HARMGHPSDQVLSKLSTIISFSFNANNKMEC 455
>gb|KYP64168.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 967
Score = 49.3 bits (116), Expect(3) = 8e-12
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = -2
Query: 116 ILYTDLWGRYHTASYQGCHYFLTIIIDYFKRGTCEYLM 3
+++ DLWG+Y+TAS G HYFLTI+ DY R T YLM
Sbjct: 85 LIHCDLWGKYNTASQNGSHYFLTIVDDY-SRATWVYLM 121
Score = 39.3 bits (90), Expect(3) = 8e-12
Identities = 17/26 (65%), Positives = 19/26 (73%)
Frame = -1
Query: 183 CH*SKQCRLPFYVSSNKTEKSFDLIH 106
CH SKQC+LPF S+NK E F LIH
Sbjct: 62 CHKSKQCKLPFNHSNNKAEAPFHLIH 87
Score = 28.5 bits (62), Expect(3) = 8e-12
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 280 HARLGHRLAKVV*LLSQLLNCSFNSNKVHC 191
H+RLGH + + +S + CSF +NK C
Sbjct: 29 HSRLGHPSFEAIQKISYIDKCSFITNKEEC 58
>gb|KYP65664.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 529
Score = 44.3 bits (103), Expect(3) = 1e-10
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -2
Query: 116 ILYTDLWGRYHTASYQGCHYFLTIIIDYFKRGTCEYLM 3
+++ DLWGRY T S+ G HYFLT I+D F R YL+
Sbjct: 200 LIHCDLWGRYATKSHNGSHYFLT-IVDDFTRAVWVYLI 236
Score = 40.4 bits (93), Expect(3) = 1e-10
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = -1
Query: 183 CH*SKQCRLPFYVSSNKTEKSFDLIH 106
CH SKQC LPF +S+NK ++F+LIH
Sbjct: 177 CHRSKQCMLPFSISNNKAVQAFELIH 202
Score = 28.5 bits (62), Expect(3) = 1e-10
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 289 VI*HARLGHRLAKVV*LLSQLLNCSFNSNKV 197
V+ HAR+GH KV+ +S LN S + NK+
Sbjct: 141 VLWHARMGHPSNKVLLKMSSSLNFSLDENKL 171
>dbj|GAU35639.1| hypothetical protein TSUD_394790 [Trifolium subterraneum]
Length = 960
Score = 46.6 bits (109), Expect(3) = 2e-10
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = -2
Query: 116 ILYTDLWGRYHTASYQGCHYFLTIIIDYFKRGTCEYLM 3
+++ DLWG+Y+T S G HYFLT++ D+ RGT YLM
Sbjct: 270 LIHCDLWGKYNTTSSNGSHYFLTLVDDH-TRGTWVYLM 306
Score = 38.9 bits (89), Expect(3) = 2e-10
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = -1
Query: 183 CH*SKQCRLPFYVSSNKTEKSFDLIH 106
CH S QCRL F S NK E+ FDLIH
Sbjct: 247 CHKSNQCRLSFSQSMNKAERPFDLIH 272
Score = 26.9 bits (58), Expect(3) = 2e-10
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 280 HARLGHRLAKVV*LLSQLLNCSFNSNKVHC 191
H R+GH + + LS L+ C + NK+ C
Sbjct: 214 HCRMGHPSTQFLQQLSCLIKCCSDFNKIKC 243
>gb|KYP36220.1| Copia protein [Cajanus cajan]
gb|KYP68721.1| Copia protein [Cajanus cajan]
Length = 585
Score = 51.6 bits (122), Expect(2) = 2e-10
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = -2
Query: 122 HLILYTDLWGRYHTASYQGCHYFLTIIIDYFKRGTCEYLM 3
HLI Y DLWG+Y+TAS+ G HYFLTI+ DY R T YLM
Sbjct: 361 HLIHY-DLWGKYNTASHNGSHYFLTIVDDY-SRATWVYLM 398
Score = 41.2 bits (95), Expect(2) = 2e-10
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Frame = -1
Query: 351 EE*IGLCDLDDGAYMLRKSTRS--------SSMHDWDT-----V*PKLYSFFLXXXXXXX 211
+E IGL D+ +G Y+LR+ T+S + W + + L
Sbjct: 270 KEMIGLGDMHEGVYILRRPTKSIYFTAFLKNMAGTWHSRLGHPLFEALQKISNIVKCSFI 329
Query: 210 XXXXXXXXVCH*SKQCRLPFYVSSNKTEKSFDLIH 106
+CH SKQCR PF S+NK E F LIH
Sbjct: 330 TNKEECCDICHKSKQCRFPFNRSNNKAEAPFHLIH 364
>gb|KYP33474.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 339
Score = 45.8 bits (107), Expect(2) = 4e-09
Identities = 33/95 (34%), Positives = 41/95 (43%), Gaps = 16/95 (16%)
Frame = -1
Query: 342 IGLCDLDDGAYMLRKSTRSSSM----------------HDWDTV*PKLYSFFLXXXXXXX 211
IGL D DG Y+L+ +T SS+ H D + L +
Sbjct: 111 IGLGDSCDGIYILKSTTMGSSLVAVHEDATNLWHARMGHPSDQI---LSQLSIPLNFHFD 167
Query: 210 XXXXXXXXVCH*SKQCRLPFYVSSNKTEKSFDLIH 106
VCH SKQCRLPF +S+NK E F LIH
Sbjct: 168 KNKLECFDVCHRSKQCRLPFSLSNNKAETPFSLIH 202
Score = 42.7 bits (99), Expect(2) = 4e-09
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = -2
Query: 116 ILYTDLWGRYHTASYQGCHYFLTIIIDYFKRGTCEYLM 3
+++ DLW +YHT ++ G HYF+TI+ DY R YL+
Sbjct: 200 LIHYDLWWKYHTMAHNGAHYFITIVDDY-TRAVWVYLL 236
>gb|KYP52818.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 180
Score = 43.1 bits (100), Expect(2) = 4e-08
Identities = 16/28 (57%), Positives = 22/28 (78%)
Frame = -2
Query: 116 ILYTDLWGRYHTASYQGCHYFLTIIIDY 33
+++ DLWGRY T S+ G HYFLTI+ D+
Sbjct: 125 LIHCDLWGRYATKSHNGSHYFLTIVDDF 152
Score = 42.0 bits (97), Expect(2) = 4e-08
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Frame = -1
Query: 435 LNCFSFMMEFCSNTIVLCNDVLCWGPSYEE*IGLCDLDDGAYMLRKSTRSSSM------- 277
LNC M+ + S+ V+ + + + IG DL DG Y+LR + + SS+
Sbjct: 14 LNC---MVTYFSDNCVIQDQAM------KRKIGSGDLCDGVYVLRMANQGSSLAAQPQDA 64
Query: 276 ---------HDWDTV*PKLYSFFLXXXXXXXXXXXXXXXVCH*SKQCRLPFYVSSNKTEK 124
H + V K+ S VCH SKQC LPF +S+NK +
Sbjct: 65 IVLWHAIMGHPSNKVLLKMSSSL---NFSLDENKLEGCDVCHQSKQCMLPFSLSNNKAVQ 121
Query: 123 SFDLIH 106
+F+LIH
Sbjct: 122 AFELIH 127
>gb|KYP53968.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 207
Score = 42.4 bits (98), Expect(2) = 1e-07
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Frame = -1
Query: 342 IGLCDLDDGAYMLRKSTRSSSM----------------HDWDTV*PKLYSFFLXXXXXXX 211
IGL D DG Y+L+ +T +S+ H D + L +
Sbjct: 22 IGLGDSCDGIYILKSTTMGTSLVAIHEDATNLWHARMGHPSDQI---LSQLSISLNFHFD 78
Query: 210 XXXXXXXXVCH*SKQCRLPFYVSSNKTEKSFDLIH 106
VCH SKQCR PF +S+NK E F LIH
Sbjct: 79 KNKLECCDVCHRSKQCRFPFSLSNNKAETPFALIH 113
Score = 41.2 bits (95), Expect(2) = 1e-07
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = -2
Query: 116 ILYTDLWGRYHTASYQGCHYFLTIIIDY 33
+++ DLW +Y+T ++ G HYFLTI+ DY
Sbjct: 111 LIHCDLWRKYYTMTHNGAHYFLTIVDDY 138
>gb|PKH48991.1| hypothetical protein CRG98_050339, partial [Punica granatum]
Length = 1053
Score = 48.1 bits (113), Expect(2) = 8e-07
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = -2
Query: 116 ILYTDLWGRYHTASYQGCHYFLTIIIDYFKRGTCEYLM 3
+++ D+WG YHTAS G HYFLTI+ D+ R T YLM
Sbjct: 360 LIHCDIWGPYHTASLSGAHYFLTIVDDH-SRATWVYLM 396
Score = 32.3 bits (72), Expect(2) = 8e-07
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -1
Query: 183 CH*SKQCRLPFYVSSNKTEKSFDLIH 106
C +KQ R PF S NK+E FDLIH
Sbjct: 337 CFRAKQTRFPFPPSINKSENIFDLIH 362
>gb|AAD24600.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 45.4 bits (106), Expect(3) = 2e-06
Identities = 23/43 (53%), Positives = 27/43 (62%)
Frame = -2
Query: 131 LRNHLILYTDLWGRYHTASYQGCHYFLTIIIDYFKRGTCEYLM 3
LR ++Y DLWG Y T S+ G YFLTII DY RG YL+
Sbjct: 444 LRIFELIYCDLWGPYRTPSHTGARYFLTIIDDY-SRGVWLYLL 485
Score = 28.1 bits (61), Expect(3) = 2e-06
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 183 CH*SKQCRLPFYVSSNKTEKSFDLIH 106
CH +KQ R F +S NKT + F+LI+
Sbjct: 426 CHRAKQTRNSFPLSINKTLRIFELIY 451
Score = 24.6 bits (52), Expect(3) = 2e-06
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 304 EEVNKVI*HARLGHRLAKVV*LLSQ 230
EE N + H+R+GH A+VV L+ +
Sbjct: 385 EEKNYELWHSRMGHPAARVVSLIPE 409