BLASTX nr result

ID: Astragalus24_contig00016392 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00016392
         (303 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_016542632.1| PREDICTED: serine/arginine-rich splicing fac...    59   1e-11
gb|EOY07655.1| RNA-binding family protein with retrovirus zinc f...    67   7e-11
dbj|GAU35358.1| hypothetical protein TSUD_337500 [Trifolium subt...    53   1e-08
ref|XP_017243145.1| PREDICTED: serine/arginine-rich splicing fac...    55   2e-06
ref|XP_019159516.1| PREDICTED: serine/arginine-rich splicing fac...    54   3e-06

>ref|XP_016542632.1| PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform
           X1 [Capsicum annuum]
          Length = 338

 Score = 59.3 bits (142), Expect(3) = 1e-11
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = -3

Query: 85  LSNDGLTVCGNHFRRVRDVDMKHDYAFV 2
           +SNDGLTV GNHFRRVRDVDMKHDYAFV
Sbjct: 49  ISNDGLTVSGNHFRRVRDVDMKHDYAFV 76



 Score = 29.3 bits (64), Expect(3) = 1e-11
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 198 DFGDSFCNVIAYFYGI 151
           DFG  F NV AYFYGI
Sbjct: 12  DFGGPFYNVFAYFYGI 27



 Score = 28.1 bits (61), Expect(3) = 1e-11
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 161 FMELATITNWCLVRL*GAKYHSVPVV 84
           F  + TI+NWC+V L G + H +PV+
Sbjct: 24  FYGIPTISNWCIVHLEG-QIHELPVL 48


>gb|EOY07655.1| RNA-binding family protein with retrovirus zinc finger-like domain,
           putative [Theobroma cacao]
          Length = 312

 Score = 67.0 bits (162), Expect = 7e-11
 Identities = 47/102 (46%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
 Frame = -3

Query: 301 VFSRYGRFLGFSLN--PKVYGGRVALVVLVEIPA*S*LWRFFL*CYCVFLWNWQQSQTGV 128
           +FSRYGRFLGF L   P V G   AL  LVEIPA          CY              
Sbjct: 30  IFSRYGRFLGFCLTWRPMVRGS--ALAELVEIPAQ---------CY-------------- 64

Query: 127 *FVFEGRSIIQFP*LSNDGLTVCGNHFRRVRDVDMKHDYAFV 2
                         LSNDGLTV  N+FRR+RDVDMKHD+AFV
Sbjct: 65  --------------LSNDGLTVSSNNFRRIRDVDMKHDFAFV 92


>dbj|GAU35358.1| hypothetical protein TSUD_337500 [Trifolium subterraneum]
          Length = 317

 Score = 53.1 bits (126), Expect(2) = 1e-08
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = -1

Query: 204 SLDFGDSFCNVIAYFYGIGNNHKLV 130
           S+DFGDSFCNVIA FYGIGNNHKLV
Sbjct: 74  SVDFGDSFCNVIACFYGIGNNHKLV 98



 Score = 33.9 bits (76), Expect(2) = 1e-08
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = -3

Query: 55  NHFRRVRDVDMKHDYAFV 2
           NH   VRDVDMKHDYAFV
Sbjct: 94  NHKLVVRDVDMKHDYAFV 111


>ref|XP_017243145.1| PREDICTED: serine/arginine-rich splicing factor RS2Z33-like
          isoform X2 [Daucus carota subsp. sativus]
          Length = 302

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 25/28 (89%), Positives = 25/28 (89%)
 Frame = -3

Query: 85 LSNDGLTVCGNHFRRVRDVDMKHDYAFV 2
          LSNDGL V GN FRRVRDVDMKHDYAFV
Sbjct: 7  LSNDGLIVSGNRFRRVRDVDMKHDYAFV 34


>ref|XP_019159516.1| PREDICTED: serine/arginine-rich splicing factor RS2Z33-like
          isoform X2 [Ipomoea nil]
          Length = 398

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 24/28 (85%), Positives = 25/28 (89%)
 Frame = -3

Query: 85 LSNDGLTVCGNHFRRVRDVDMKHDYAFV 2
          LSNDGL V GNHFRRVRDVDMK DYAF+
Sbjct: 10 LSNDGLIVSGNHFRRVRDVDMKRDYAFI 37


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