BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00015946
         (710 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX99662.1| retrovirus-related Pol polyprotein from transposo...   350   e-110
gb|PNY02741.1| retrovirus-related Pol polyprotein from transposo...   341   e-107
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo...   320   e-104
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo...   317   e-102
gb|PNX88215.1| hypothetical protein L195_g044317, partial [Trifo...   310   e-101
gb|PNY10806.1| histone deacetylase [Trifolium pratense]               328   e-100
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   310   e-100
gb|PNX76161.1| retrovirus-related Pol polyprotein from transposo...   304   8e-99
gb|PNX75166.1| retrovirus-related Pol polyprotein from transposo...   305   1e-98
gb|PNX84939.1| retrovirus-related Pol polyprotein from transposo...   304   3e-98
gb|PNX77250.1| retrovirus-related Pol polyprotein from transposo...   304   3e-98
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo...   304   4e-98
dbj|GAU27211.1| hypothetical protein TSUD_108020 [Trifolium subt...   315   7e-98
dbj|GAU31266.1| hypothetical protein TSUD_153410 [Trifolium subt...   312   1e-97
gb|PNX93770.1| histone deacetylase [Trifolium pratense]               320   3e-97
gb|PNY05793.1| histone deacetylase [Trifolium pratense]               320   3e-97
gb|PNX92906.1| retrovirus-related Pol polyprotein from transposo...   313   6e-96
gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]      315   8e-96
gb|PNY18109.1| retrovirus-related Pol polyprotein from transposo...   313   1e-95
gb|KYP42777.1| Retrovirus-related Pol polyprotein from transposo...   296   2e-95

>gb|PNX99662.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1046

 Score =  350 bits (898), Expect = e-110
 Identities = 160/234 (68%), Positives = 200/234 (85%)
 Frame = -2

Query: 706  KWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERLT 527
            KW++QQID+NNAF+NG L EE++M QPPGF S+DKT VC+LH++LYGLKQAPRAWYERLT
Sbjct: 636  KWDIQQIDVNNAFLNGILHEEVYMVQPPGFVSTDKTLVCKLHKALYGLKQAPRAWYERLT 695

Query: 526  QVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFALK 347
            Q LL FGF +SKCD SLFVY+ K   LY LVYVDDI++TG+S  L+HDLILKLN  FALK
Sbjct: 696  QALLHFGFHASKCDPSLFVYNHKDVTLYVLVYVDDILLTGSSSALLHDLILKLNSQFALK 755

Query: 346  ELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGSD 167
             +GKPDYFLG+E+KHL NGS+L+TQ+KYI+DLLH+ANMA    ISTPMV+  KLS+ G+D
Sbjct: 756  HMGKPDYFLGIEVKHLHNGSILLTQSKYIRDLLHRANMAEAKGISTPMVSSLKLSRFGTD 815

Query: 166  VLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
             L +P +YRSI+GALQYVTL+RPEI++ VNK+CQ+++ PL +HW+A KR+LRYL
Sbjct: 816  TLPDPHEYRSIVGALQYVTLTRPEIAFCVNKMCQFLANPLLSHWQAVKRILRYL 869


>gb|PNY02741.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1054

 Score =  341 bits (875), Expect = e-107
 Identities = 158/234 (67%), Positives = 198/234 (84%)
 Frame = -2

Query: 706  KWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERLT 527
            KW++QQIDINNAF+NG L+EE++M QPPGF SSD + VCRLHR+LYGLKQAPRAWYERLT
Sbjct: 751  KWDIQQIDINNAFLNGILQEEVYMTQPPGFISSDSSLVCRLHRALYGLKQAPRAWYERLT 810

Query: 526  QVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFALK 347
            Q L++FGF  SKCD SLFVY+ K   LY LVYVDDI++TG+S +L+ DLI KLN  FALK
Sbjct: 811  QALVRFGFQPSKCDPSLFVYTHKGITLYVLVYVDDILLTGSSSSLLQDLISKLNSQFALK 870

Query: 346  ELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGSD 167
             +G+PDYFLG+E+ HL NG++L+TQ+KYI+DLLH+ANMA    I+TPMV+  KLS+ GSD
Sbjct: 871  HMGRPDYFLGIEVHHLPNGNMLLTQSKYIRDLLHRANMAEAKGINTPMVSSLKLSRFGSD 930

Query: 166  VLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
             L +P +YRSI+GALQYVTL+RPEI++ VNK+CQ++S PL THW+A KR+LRYL
Sbjct: 931  SLPDPHEYRSIVGALQYVTLTRPEIAFCVNKVCQFLSNPLLTHWQAVKRILRYL 984


>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 535

 Score =  320 bits (819), Expect = e-104
 Identities = 145/235 (61%), Positives = 191/235 (81%)
 Frame = -2

Query: 709 HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
           +KW +QQID+NNAF+NG+L+EE++MKQP GF SSDK+ VC+LH+SLYGLKQAPRAWYERL
Sbjct: 121 YKWPVQQIDVNNAFLNGWLQEEVYMKQPAGFESSDKSLVCKLHKSLYGLKQAPRAWYERL 180

Query: 529 TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
           TQ LLQ GF +SKCD SL ++  +    Y L+YVDDI+ITG++P LI DLI KLN  FAL
Sbjct: 181 TQALLQMGFVTSKCDPSLLIHYQQGACTYVLIYVDDILITGSAPHLIKDLIHKLNSQFAL 240

Query: 349 KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
           K+LG+ DYFLG+E+ H+ +G LL+ Q+KYI+DLL + NM  C  I +PMV+  +LSK G+
Sbjct: 241 KQLGEVDYFLGIEVHHMPSGGLLLNQSKYIRDLLCRTNMENCKPIGSPMVSSCRLSKFGT 300

Query: 169 DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
           D + +P  YRS +GALQY TL+RP+I+++VNK+CQ+++ PLETHWKA KR+LRYL
Sbjct: 301 DAMSDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLETHWKAVKRILRYL 355


>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 535

 Score =  317 bits (811), Expect = e-102
 Identities = 147/235 (62%), Positives = 188/235 (80%)
 Frame = -2

Query: 709 HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
           +KW +QQIDINNAF+NG L+EE++M QPPGF SSDK  VC+LH++LYGLKQAPRAWY+RL
Sbjct: 121 YKWSVQQIDINNAFLNGILQEEVYMTQPPGFESSDKNLVCKLHKALYGLKQAPRAWYDRL 180

Query: 529 TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
           TQ LLQ GFT S+CD SL V+       Y LVYVDDI+ITG++P LI DLI KLN  FAL
Sbjct: 181 TQTLLQMGFTKSRCDPSLLVHHQNGACTYVLVYVDDILITGSAPHLIKDLIHKLNIKFAL 240

Query: 349 KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
           K+LG+ DYFLGLE+ H  +GS+L+ Q+KYI+DLL K  M  C  I +PMV+  KLSK G+
Sbjct: 241 KQLGEVDYFLGLEVHHSTSGSILLHQSKYIKDLLCKTKMENCKPIGSPMVSSCKLSKFGT 300

Query: 169 DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
           D +++P  YRS +GALQY TL+RP+I+++VNK+CQ+++ PLE+HWKA KR+LRYL
Sbjct: 301 DTMEDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRILRYL 355


>gb|PNX88215.1| hypothetical protein L195_g044317, partial [Trifolium pratense]
          Length = 476

 Score =  310 bits (794), Expect = e-101
 Identities = 143/235 (60%), Positives = 186/235 (79%)
 Frame = -2

Query: 709 HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
           +KW +QQIDINNAF+NG L+EE++M QP GF  SDK+ VC+LH+SLYGLKQAPRAWY++L
Sbjct: 64  YKWAVQQIDINNAFLNGILQEEVYMTQPTGFEVSDKSLVCKLHKSLYGLKQAPRAWYDKL 123

Query: 529 TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
           TQ LLQ GF  SKCD SL V+  +    Y L+YVDDI+ITG++P LI DLI KLN  FAL
Sbjct: 124 TQTLLQMGFVKSKCDPSLLVHHQQGACTYVLIYVDDILITGSAPHLIKDLIDKLNVKFAL 183

Query: 349 KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
           K+LG+ DYFLG+++ H  +GSLL+ Q+KYI DLL+K  M  C  I +PMV   +LSK G+
Sbjct: 184 KQLGEVDYFLGIQVHHKPSGSLLLHQSKYINDLLNKTKMENCKPIGSPMVNSCRLSKFGT 243

Query: 169 DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
           D +Q+P  YRS +GALQY T++RP+I+Y+VNK+CQ+++ PLE+HWKA KR+LRYL
Sbjct: 244 DSMQDPSLYRSTVGALQYATITRPDIAYSVNKVCQFMAHPLESHWKAVKRILRYL 298


>gb|PNY10806.1| histone deacetylase [Trifolium pratense]
          Length = 1441

 Score =  328 bits (840), Expect = e-100
 Identities = 147/234 (62%), Positives = 198/234 (84%)
 Frame = -2

Query: 706  KWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERLT 527
            KW++QQIDINNAF+NG L+EE++M QPPGF + DK+ VC+LH++LYGLKQAPRAWY+RL 
Sbjct: 1029 KWDIQQIDINNAFLNGILQEEVYMSQPPGFGNGDKSLVCKLHKALYGLKQAPRAWYDRLA 1088

Query: 526  QVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFALK 347
            Q L+ FGF  SKCD SLFVYS +   +Y LVYVDDI++TG+S  ++HDLI KL+  FALK
Sbjct: 1089 QALVSFGFHPSKCDPSLFVYSHQGVTMYVLVYVDDILLTGSSSPILHDLIAKLHSQFALK 1148

Query: 346  ELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGSD 167
             +G+PDYFLG+E+++L +G++L+TQ+KYI+DLLH+ANMA    I+TPMV+  KLSK G+D
Sbjct: 1149 HMGRPDYFLGIEVRYLPSGNILLTQSKYIRDLLHRANMADAKGINTPMVSSLKLSKFGTD 1208

Query: 166  VLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
             L +P +YRSI+GALQYVTL+RP+I++ VNK+CQ++S+PL +HW+A KR+LRYL
Sbjct: 1209 ELPDPLEYRSIVGALQYVTLTRPDIAFCVNKVCQFLSRPLLSHWQAVKRILRYL 1262


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 539

 Score =  310 bits (794), Expect = e-100
 Identities = 143/233 (61%), Positives = 186/233 (79%)
 Frame = -2

Query: 703 WEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERLTQ 524
           W++ Q+D+NNAF+NG L E ++M+QPPGF   D T VC+L+++LYGLKQAPR W+ERL  
Sbjct: 126 WDIHQLDVNNAFLNGSLNETVYMQQPPGFEVPDSTLVCKLNKALYGLKQAPRQWFERLQY 185

Query: 523 VLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFALKE 344
            LLQFGF +SKCD SLF Y  +S I+Y LVYVDDIIITG S      LI +LN IF+LK+
Sbjct: 186 TLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQLIDQLNSIFSLKQ 245

Query: 343 LGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGSDV 164
           LGK DYFLG+E++HLQNGS+L+TQ+KYI+DLL + NM   N+IS+PMV+  KLSKHGSD 
Sbjct: 246 LGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSCKLSKHGSDT 305

Query: 163 LQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
           L +   YRS++GALQY T++RPE+S+ VNK+CQ+++ PLE+HW A KR+LRYL
Sbjct: 306 LADSTFYRSVVGALQYATITRPELSFAVNKVCQFMAHPLESHWNAVKRILRYL 358


>gb|PNX76161.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 459

 Score =  304 bits (779), Expect = 8e-99
 Identities = 142/235 (60%), Positives = 182/235 (77%)
 Frame = -2

Query: 709 HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
           +KW +QQIDINNAF+NG L EE++M QP GF SSDK+ VC+LH+SLYGLKQAPRAWYERL
Sbjct: 109 YKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERL 168

Query: 529 TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
           TQ LLQ GF +SKCD SL V   +    Y L+YVDDI+ITG++P LI D+I KLN   AL
Sbjct: 169 TQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQDVIQKLNFKLAL 228

Query: 349 KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
           K+LG+ DYFLG+E+    +G L++ Q+KYI+DLL K  M  C  I +PMV   +LS+ G+
Sbjct: 229 KQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLSRFGT 288

Query: 169 DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
           D + +P  YRS +GALQY TL+RP+IS++VNK+CQ+I+ PLE+HWKA KR+LRYL
Sbjct: 289 DAMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFIAHPLESHWKAVKRILRYL 343


>gb|PNX75166.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 499

 Score =  305 bits (781), Expect = 1e-98
 Identities = 142/235 (60%), Positives = 181/235 (77%)
 Frame = -2

Query: 709 HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
           +KW +QQIDINNAF+NG L+EE++M QP GF +SDKT VC+LH+SLYGLKQAPRAWYERL
Sbjct: 85  YKWSVQQIDINNAFLNGLLQEEVYMSQPAGFENSDKTLVCKLHKSLYGLKQAPRAWYERL 144

Query: 529 TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
           T  LLQ GF  S+CD SL V+       Y LVYVDDI+ITG+   L+ DLI KLN  FAL
Sbjct: 145 THTLLQMGFVKSRCDPSLLVHHKHGACTYVLVYVDDILITGSDSHLVKDLIHKLNVKFAL 204

Query: 349 KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
           K+LG+ DYFLG+E+ H  +G LL+ Q KY++DLL K NM  C  I +PMV+  +L+K G+
Sbjct: 205 KQLGELDYFLGIEVHHKPSGGLLLHQTKYVKDLLIKTNMDNCKPIGSPMVSSCRLTKFGT 264

Query: 169 DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
           D + N   YRS +GALQY TL+RP+I+Y+VNK+CQ+++ PLE+HWKA KR+LRYL
Sbjct: 265 DAMTNATLYRSTVGALQYATLTRPDIAYSVNKVCQFMAHPLESHWKAVKRILRYL 319


>gb|PNX84939.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 499

 Score =  304 bits (779), Expect = 3e-98
 Identities = 142/235 (60%), Positives = 182/235 (77%)
 Frame = -2

Query: 709 HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
           +KW +QQIDINNAF+NG L EE++M QP GF SSDK+ VC+LH+SLYGLKQAPRAWYERL
Sbjct: 178 YKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERL 237

Query: 529 TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
           TQ LLQ GF +SKCD SL V   +    Y L+YVDDI+ITG++P LI D+I KLN   AL
Sbjct: 238 TQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQDVIQKLNFKLAL 297

Query: 349 KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
           K+LG+ DYFLG+E+    +G L++ Q+KYI+DLL K  M  C  I +PMV   +LS+ G+
Sbjct: 298 KQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLSRFGT 357

Query: 169 DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
           D + +P  YRS +GALQY TL+RP+IS++VNK+CQ+I+ PLE+HWKA KR+LRYL
Sbjct: 358 DAMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFIAHPLESHWKAVKRILRYL 412


>gb|PNX77250.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 499

 Score =  304 bits (779), Expect = 3e-98
 Identities = 142/235 (60%), Positives = 182/235 (77%)
 Frame = -2

Query: 709 HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
           +KW +QQIDINNAF+NG L EE++M QP GF SSDK+ VC+LH+SLYGLKQAPRAWYERL
Sbjct: 85  YKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERL 144

Query: 529 TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
           TQ LLQ GF +SKCD SL V   +    Y L+YVDDI+ITG++P LI D+I KLN   AL
Sbjct: 145 TQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQDVIQKLNFKLAL 204

Query: 349 KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
           K+LG+ DYFLG+E+    +G L++ Q+KYI+DLL K  M  C  I +PMV   +LS+ G+
Sbjct: 205 KQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLSRFGT 264

Query: 169 DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
           D + +P  YRS +GALQY TL+RP+IS++VNK+CQ+I+ PLE+HWKA KR+LRYL
Sbjct: 265 DAMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFIAHPLESHWKAVKRILRYL 319


>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 515

 Score =  304 bits (779), Expect = 4e-98
 Identities = 142/235 (60%), Positives = 182/235 (77%)
 Frame = -2

Query: 709 HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
           +KW +QQIDINNAF+NG L EE++M QP GF SSDK+ VC+LH+SLYGLKQAPRAWYERL
Sbjct: 194 YKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERL 253

Query: 529 TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
           TQ LLQ GF +SKCD SL V   +    Y L+YVDDI+ITG++P LI D+I KLN   AL
Sbjct: 254 TQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQDVIQKLNFKLAL 313

Query: 349 KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
           K+LG+ DYFLG+E+    +G L++ Q+KYI+DLL K  M  C  I +PMV   +LS+ G+
Sbjct: 314 KQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSPMVNSCRLSRFGT 373

Query: 169 DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
           D + +P  YRS +GALQY TL+RP+IS++VNK+CQ+I+ PLE+HWKA KR+LRYL
Sbjct: 374 DAMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFIAHPLESHWKAVKRILRYL 428


>dbj|GAU27211.1| hypothetical protein TSUD_108020 [Trifolium subterraneum]
          Length = 967

 Score =  315 bits (807), Expect = 7e-98
 Identities = 144/235 (61%), Positives = 188/235 (80%)
 Frame = -2

Query: 709  HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
            +KW +QQID+ NAF+NG L+EE++M Q  GF  +DKT VC+LH+SLYGLKQAPRAWYERL
Sbjct: 587  YKWLIQQIDVKNAFLNGVLQEEVYMTQLAGFEVADKTLVCKLHKSLYGLKQAPRAWYERL 646

Query: 529  TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
            TQ LLQ GF +SKCD SL ++  K    Y L+YVDDI+ITG++P LIHDLI KLN  FAL
Sbjct: 647  TQALLQMGFVTSKCDPSLLIHHQKGACTYVLIYVDDILITGSTPHLIHDLIHKLNVKFAL 706

Query: 349  KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
            K+LG+ DYFLG+E+ H+ +G LL+ Q+KY++DLL + NM  C +I +PMV+  KLSK G+
Sbjct: 707  KQLGEVDYFLGIEVHHMPSGDLLLNQSKYVRDLLSRTNMENCKAIGSPMVSSCKLSKFGT 766

Query: 169  DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
            D + +P  YRS +GALQY TL+RP+IS++VNK+CQ+++ PLETHWKA KR+LRYL
Sbjct: 767  DSMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFMANPLETHWKAVKRILRYL 821


>dbj|GAU31266.1| hypothetical protein TSUD_153410 [Trifolium subterraneum]
          Length = 844

 Score =  312 bits (799), Expect = 1e-97
 Identities = 143/235 (60%), Positives = 192/235 (81%)
 Frame = -2

Query: 709  HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
            +KW ++Q+DINNAF+NG L EE++M QP GF S+D T VC+L+++LYGLKQAPR W+++L
Sbjct: 435  YKWPIRQLDINNAFLNGSLDEEVYMVQPQGFESTDATLVCKLNKALYGLKQAPRQWFDKL 494

Query: 529  TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
            T  L+QFGF +SKCD SLF+YS KS ++Y LVYVDDIII G+SPTL+  L+ KL+ +F+L
Sbjct: 495  TTTLIQFGFNASKCDPSLFIYSQKSQVVYLLVYVDDIIIIGSSPTLVQHLVDKLDAVFSL 554

Query: 349  KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
            K+LG  DYFLG+E+KHL++GSLL+TQ KYI+DLL K NM  CN I+TPM++  KLSK GS
Sbjct: 555  KQLGDLDYFLGIEVKHLKDGSLLLTQTKYIKDLLVKTNMFDCNPIATPMMSSCKLSKVGS 614

Query: 169  DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
            D + +   YRS++G+LQY T++RPEIS+ VNK+CQ++  PLE+HW A KR+LRYL
Sbjct: 615  DNVADATLYRSVVGSLQYATITRPEISFAVNKVCQFMPTPLESHWAAVKRILRYL 669


>gb|PNX93770.1| histone deacetylase [Trifolium pratense]
          Length = 1453

 Score =  320 bits (819), Expect = 3e-97
 Identities = 145/235 (61%), Positives = 190/235 (80%)
 Frame = -2

Query: 709  HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
            +KW +QQID+NNAF+NG L+EE++M QPPGF ++DK+ VC+LH+SLYGLKQAPRAWYERL
Sbjct: 1041 YKWSIQQIDVNNAFLNGLLQEEVYMSQPPGFEATDKSLVCKLHKSLYGLKQAPRAWYERL 1100

Query: 529  TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
            TQ LLQ GF +SKCD SL V+  +    Y L+YVDDI+ITG++P LI DLI KLN  F+L
Sbjct: 1101 TQALLQMGFVTSKCDPSLLVHHQQGACTYVLIYVDDILITGSAPHLIQDLIHKLNIQFSL 1160

Query: 349  KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
            K+LG+ DYFLG+E+ H+ +G LL+ Q+KYI+DLL +  M  C +I +PMV+  +LSK G+
Sbjct: 1161 KQLGEVDYFLGIEVHHMPSGGLLLNQSKYIKDLLSRTKMENCKAIGSPMVSSCRLSKFGT 1220

Query: 169  DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
            D + +P  YRS +GALQY TL+RP+ISY+VNK+CQ++S PLETHWKA KR+LRYL
Sbjct: 1221 DSMSDPSLYRSTVGALQYATLTRPDISYSVNKVCQFMSNPLETHWKAVKRILRYL 1275


>gb|PNY05793.1| histone deacetylase [Trifolium pratense]
          Length = 1485

 Score =  320 bits (819), Expect = 3e-97
 Identities = 149/235 (63%), Positives = 193/235 (82%)
 Frame = -2

Query: 709  HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
            +KW +QQIDINNAF+NGFL+EE++M QPPGF  SDKT VC+L+RSLYGLKQAPRAWYERL
Sbjct: 1073 NKWTVQQIDINNAFLNGFLQEEVYMVQPPGFEHSDKTLVCKLNRSLYGLKQAPRAWYERL 1132

Query: 529  TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
            T  L+ FGFT S+CD SL VY    + +Y L+YVDDI+ITG++P LI DLI KL++ F+L
Sbjct: 1133 TAALITFGFTKSRCDPSLLVYDLNGSTIYVLIYVDDILITGSAPQLIQDLINKLHQQFSL 1192

Query: 349  KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
            K+LG+ DYFLG+E+ HL +G++L+ QAKYI+DLL KANM   N I +PMV+  +LSK G+
Sbjct: 1193 KQLGQLDYFLGIEVHHLASGAILLNQAKYIRDLLCKANMDEANGIGSPMVSTCRLSKFGT 1252

Query: 169  DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
            D L +P  YRSI+GALQY TL+RP+I+++VNK+ Q+++ PLETHWKA KR+LRYL
Sbjct: 1253 DSLADPTMYRSIVGALQYATLTRPDIAFSVNKVAQFMAHPLETHWKAVKRILRYL 1307


>gb|PNX92906.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1196

 Score =  313 bits (803), Expect = 6e-96
 Identities = 142/235 (60%), Positives = 188/235 (80%)
 Frame = -2

Query: 709  HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
            +KW +QQID+NNAF+NG L+EE++M QP GF  +DK+ VC+LH+SLYGLKQAPRAWYERL
Sbjct: 784  YKWAVQQIDVNNAFLNGLLQEEVYMSQPSGFEVADKSLVCKLHKSLYGLKQAPRAWYERL 843

Query: 529  TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
            TQ LLQ GF +SKCD SL ++  +    Y L+YVDDI+ITG++P LI DLI KLN  F+L
Sbjct: 844  TQTLLQMGFVASKCDPSLLIHHQQGACTYVLIYVDDILITGSAPHLIQDLIHKLNIQFSL 903

Query: 349  KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
            K+LG+ DYFLG+E+ H+ +G LL+ Q+KYI+DLL +  M  C +I +PMV+  +LSK G+
Sbjct: 904  KQLGEVDYFLGIEVHHMPSGGLLLNQSKYIKDLLSRTKMENCKAIGSPMVSSCRLSKFGT 963

Query: 169  DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
            D + +P  YRS +GALQY TL+RP+ISY+VNK+CQ+++ PLETHWKA KR+LRYL
Sbjct: 964  DSMSDPSLYRSTVGALQYATLTRPDISYSVNKVCQFMANPLETHWKAVKRILRYL 1018


>gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1438

 Score =  315 bits (808), Expect = 8e-96
 Identities = 146/235 (62%), Positives = 190/235 (80%)
 Frame = -2

Query: 709  HKWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERL 530
            +KW ++QIDINNAF+NG L+EE++M QP GF SSDK+ VC+LH+SLYGLKQAPRAWYERL
Sbjct: 1034 YKWSVKQIDINNAFLNGLLQEEVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERL 1093

Query: 529  TQVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFAL 350
            TQ L+Q GF++SKCD SL V+  +    Y L+YVDDI+ITG+S  LI DLI KLN  FAL
Sbjct: 1094 TQTLVQMGFSASKCDPSLLVHHQQGACTYVLIYVDDILITGSSSQLIEDLIHKLNIQFAL 1153

Query: 349  KELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGS 170
            K+LG+ DYFLG+E+ H+ +G+LL+ Q+KYI+DLL K NM  C  I +PMV+  +LSK G+
Sbjct: 1154 KQLGEIDYFLGIEVHHMSSGALLLNQSKYIKDLLVKTNMDNCKPIGSPMVSTCRLSKFGT 1213

Query: 169  DVLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
            D L +P  YRS +GALQY TL+RP+I+++VNK+CQY++ PLE+HWKA KR+LRYL
Sbjct: 1214 DALSDPSLYRSTVGALQYATLTRPDIAFSVNKVCQYMAHPLESHWKAVKRILRYL 1268


>gb|PNY18109.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1239

 Score =  313 bits (803), Expect = 1e-95
 Identities = 143/234 (61%), Positives = 190/234 (81%)
 Frame = -2

Query: 706  KWEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERLT 527
            KW++QQID+NNAF+NG L+EE++M QP GF SSDK+ VC+LH+SLYGLKQAPRAWY+RLT
Sbjct: 831  KWQVQQIDVNNAFLNGVLQEEVYMAQPSGFESSDKSLVCKLHKSLYGLKQAPRAWYDRLT 890

Query: 526  QVLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFALK 347
            Q LLQ GF  SKCD SL V++   T  Y L+YVDDI+I G++P LI+DLI KLN  FALK
Sbjct: 891  QALLQLGFIKSKCDPSLLVHNQNGTCTYVLIYVDDILIIGSAPHLINDLINKLNMSFALK 950

Query: 346  ELGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGSD 167
             LG+ DYFLG+E+ HL +G+LL+ Q+KY++DLL KA M     I +PMV+  +LSK+G+D
Sbjct: 951  RLGQVDYFLGIEVHHLSSGALLLNQSKYVRDLLCKAKMEDSKPIGSPMVSSCRLSKYGTD 1010

Query: 166  VLQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
             + +P  YRS++GALQY TL+RP+I+++VNK+CQ+++ PLE+HWKA KR+LRYL
Sbjct: 1011 TMTDPTLYRSVVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRILRYL 1064


>gb|KYP42777.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 459

 Score =  296 bits (757), Expect = 2e-95
 Identities = 136/233 (58%), Positives = 186/233 (79%)
 Frame = -2

Query: 703 WEMQQIDINNAFINGFLKEEIFMKQPPGFTSSDKTQVCRLHRSLYGLKQAPRAWYERLTQ 524
           W++  +D+NNAF+NG L+E +FM QPPGF S+DK+ VCRL+++LYGLKQAPR W++RL  
Sbjct: 127 WDLLHLDVNNAFLNGLLEETVFMVQPPGFESADKSLVCRLNKALYGLKQAPRQWFDRLKT 186

Query: 523 VLLQFGFTSSKCDTSLFVYSAKSTILYALVYVDDIIITGTSPTLIHDLILKLNKIFALKE 344
            LLQFGF++ K D SLF Y+ +   +Y LVYVDDII+TG+S +LI  L  +LN  FALK+
Sbjct: 187 TLLQFGFSACKSDPSLFTYTLQQQTVYLLVYVDDIILTGSSQSLIQQLTTQLNARFALKQ 246

Query: 343 LGKPDYFLGLELKHLQNGSLLVTQAKYIQDLLHKANMAGCNSISTPMVTHPKLSKHGSDV 164
           LG  DYFLG+E+K+  + S+L+TQ+KYI+DLLHK  MA    IS+PMV+  KLSK+G+D+
Sbjct: 247 LGLLDYFLGIEVKYFTDKSILMTQSKYIRDLLHKTKMAEAQPISSPMVSSCKLSKNGNDL 306

Query: 163 LQNPQQYRSIIGALQYVTLSRPEISYTVNKLCQYISQPLETHWKAAKRLLRYL 5
             +P  +RS++GALQY TL+RP+ISY+VNK+CQ+++QPL+THW A KR+LRYL
Sbjct: 307 FHDPTLFRSVVGALQYATLTRPDISYSVNKVCQFMAQPLDTHWIAVKRILRYL 359