BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00008127
         (4938 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO23078.1| polyprotein [Glycine max]                             1856   0.0  
gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium prat...  1832   0.0  
gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifo...  1814   0.0  
dbj|GAU11620.1| hypothetical protein TSUD_346120 [Trifolium subt...  1795   0.0  
dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subt...  1783   0.0  
dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subt...  1768   0.0  
gb|PNY16560.1| Ty3/gypsy retrotransposon protein [Trifolium prat...  1766   0.0  
dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subt...  1716   0.0  
dbj|GAU12540.1| hypothetical protein TSUD_182540 [Trifolium subt...  1706   0.0  
gb|KYP39589.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]  1659   0.0  
gb|PNX92398.1| Ty3/gypsy retrotransposon protein [Trifolium prat...  1633   0.0  
gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifo...  1600   0.0  
gb|PNY16671.1| retrotransposon-related protein, partial [Trifoli...  1585   0.0  
gb|PNX94483.1| retrotransposon-related protein, partial [Trifoli...  1578   0.0  
gb|PNX96484.1| Ty3/gypsy retrotransposon protein [Trifolium prat...  1553   0.0  
dbj|GAU23504.1| hypothetical protein TSUD_39830 [Trifolium subte...  1522   0.0  
gb|KYP39590.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]  1470   0.0  
dbj|GAU35592.1| hypothetical protein TSUD_295280 [Trifolium subt...  1402   0.0  
gb|PNX98300.1| Ty3/gypsy retrotransposon protein, partial [Trifo...  1310   0.0  
gb|PNX73110.1| Ty3/gypsy retrotransposon protein, partial [Trifo...  1301   0.0  

>gb|AAO23078.1| polyprotein [Glycine max]
          Length = 1552

 Score = 1856 bits (4808), Expect = 0.0
 Identities = 923/1564 (59%), Positives = 1146/1564 (73%), Gaps = 32/1564 (2%)
 Frame = -1

Query: 4716 MADNTRLKELTTELRRQAETI-----------EKNEAASRARFEELSSMQKASEARFNQL 4570
            MADNTR+KE+  EL++ A+ I           E+ EA + A+ E++  MQ  ++++F+QL
Sbjct: 1    MADNTRMKEVYAELKKNADAITRVSDDLQNHIERLEATNHAQMEKIEVMQSTNDSQFSQL 60

Query: 4569 ADAFEKLMQQT---PTVTHGGTNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPTMSS 4399
                 +++Q+    P  +HG +NS                                    
Sbjct: 61   NAVMSQVLQRLQNIPMSSHGASNSQKE------------------------------QQR 90

Query: 4398 TPFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIASVHLDQEVVPWFQMV 4219
            + FQVR +KLDFPRF+GKNV+DWIFKAEQFF YY TPD +RLIIASVHLDQ+VVPW+QM+
Sbjct: 91   SSFQVRSVKLDFPRFDGKNVMDWIFKAEQFFDYYATPDADRLIIASVHLDQDVVPWYQML 150

Query: 4218 NRSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYYLEFTALSNRVYGISN 4039
             ++ PF +W  FTRALELDFGPS YDCPRA+LFKL QS +VNEYY++FTAL NRV G+S 
Sbjct: 151  QKTEPFSSWQAFTRALELDFGPSAYDCPRATLFKLNQSATVNEYYMQFTALVNRVDGLSA 210

Query: 4038 DALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXANTNVQNQKYNAGSTAV 3859
            +A++DCFVSGL++E+ RDV    P ++T                   +  +KY   ++  
Sbjct: 211  EAILDCFVSGLQEEISRDVKAMEPRTLTKAVAL------------AKLFEEKY---TSPP 255

Query: 3858 QARAPFNPTRN--SQTQATEKAXXXXXXXXXXXXPMSQLQKNPA----------IKRIS- 3718
            + +   N  RN  S T AT+K              +  L   P+          IK+IS 
Sbjct: 256  KTKTFSNLARNFTSNTSATQKYPPTNQKNDNPKPNLPPLLPTPSTKPFNLRNQNIKKISP 315

Query: 3717 AEMQLRREKGLCYFCDDKFSFSHRCPNKHLMLLEL-----XXXXXXXXXXXQANSDDDRE 3553
            AE+QLRREK LCYFCD+KFS +H+CPN+ +MLL+L                +AN DDD  
Sbjct: 316  AEIQLRREKNLCYFCDEKFSPAHKCPNRQVMLLQLEETDEDQTDEQVMVTEEANMDDD-- 373

Query: 3552 IQKPVEHHLSLNALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPIE 3373
                  HHLSLNA+ G+ G+G IRF G +G + V IL+DGGSSD+FIQPR+A  L LP+E
Sbjct: 374  -----THHLSLNAMRGSNGVGTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVE 428

Query: 3372 PVTRCNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGPH 3193
            P     VLVGNGQ + AEG++Q L + +QG ++ VP YLL ++G+DVILG+ WLA+LGPH
Sbjct: 429  PAPNLRVLVGNGQILSAEGIVQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPH 488

Query: 3192 VADYATSKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAPE 3013
            VADYA   L+F+   KF+TLQG+ + +   AQLH F+RLQ+  +I E F +Q I+   PE
Sbjct: 489  VADYAALTLKFFQNDKFITLQGEGNSEATQAQLHHFRRLQNTKSIEECFAIQLIQKEVPE 548

Query: 3012 DNWKDMPVTVEPEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHS 2833
            D  KD+P  ++PE+A LL+TY +VF VP  LPP RE  H I LK+G+ PVKV+PYRYPH+
Sbjct: 549  DTLKDLPTNIDPELAILLHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHT 608

Query: 2832 QKEQIEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMP 2653
            QK+QIEKM+QEML +G             +LVKKKDG+WR CTDYRALNAIT+KDSFPMP
Sbjct: 609  QKDQIEKMIQEMLVQGIIQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMP 668

Query: 2652 TVDELLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPA 2473
            TVDELLDELHGA++FSK DLRSGYHQILV+PEDR+KTAFRTH GHYEWLVMPFGLTNAPA
Sbjct: 669  TVDELLDELHGAQYFSKLDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPA 728

Query: 2472 TFQRLMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSF 2293
            TFQ LMN+IFQ  LRK VLVFFDDIL+YS SW  HL+ +E VLQ L QH L+A+LSKCSF
Sbjct: 729  TFQCLMNKIFQFALRKFVLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSF 788

Query: 2292 GLTEVEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIA 2113
            G TEV+YLGH VSG GVSM+  KV AVLDWP P+N+KQLRGFLGLTGYYRRFIK+YA+IA
Sbjct: 789  GDTEVDYLGHKVSGLGVSMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIA 848

Query: 2112 GPLTNLLKKDAFQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLS 1933
            GPLT+LL+KD+F WN   + AF +LKKA+T APVL LPDFSQPF+LETDASG GVGAVL 
Sbjct: 849  GPLTDLLQKDSFLWNNEAEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLG 908

Query: 1932 QGGHPIAFFSKKMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXX 1753
            Q GHPIA+FSKK+APRMQ QSAYTRE  AIT AL+KFRHYLLG+KFI+RT          
Sbjct: 909  QNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMD 968

Query: 1752 XXXQTPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVA 1573
               QTPEQQAWLHKF+GYDF+IEYKPGKDNQAADALSR+  ++WS P ++FLEEL+  + 
Sbjct: 969  QSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMFMLAWSEPHSIFLEELRARLI 1028

Query: 1572 TNEHLKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHA 1393
            ++ HLK +++  +Q   A  +Y V+ GLLYWK ++VIP E +++ +IL+EYH SPIGGHA
Sbjct: 1029 SDPHLKQLMETYKQGADAS-HYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSPIGGHA 1087

Query: 1392 GVTRTLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVT 1213
            G+TRTLAR+ AQFYWPKM++DVK Y+  C++CQQAKS  T  AGLL+PLPIP QVW+DV 
Sbjct: 1088 GITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVA 1147

Query: 1212 MDFITGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSII 1033
            MDFITGLP S G +VIMVV+DRLTK+AHFIP+K DY+SK VAEAFM  +V+LHG+P+SI+
Sbjct: 1148 MDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIV 1207

Query: 1032 SDRDRVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWY 853
            SDRDRVFTS FWQ+LF+LQGTTLAMSSAYHPQ+DGQSE +NKCLEMYLRCFT+ +PK W 
Sbjct: 1208 SDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEHPKGWV 1267

Query: 852  KALCWAELWYNTSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVITE 673
            KAL WAE WYNT++H S GM+PF+ALYGREPP LTR A +  DP E+++QL DRDA++ +
Sbjct: 1268 KALPWAEFWYNTAYHMSLGMTPFRALYGREPPTLTRQACSIDDPAEVREQLTDRDALLAK 1327

Query: 672  LKRNLARAQQIMKNNADKKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPFT 493
            LK NL RAQQ+MK  ADKKR DV F++GD+VLVKLQPYRQ S  LRKNQKL MRYFGPF 
Sbjct: 1328 LKINLTRAQQVMKRQADKKRLDVSFQIGDEVLVKLQPYRQHSAVLRKNQKLSMRYFGPFK 1387

Query: 492  ILAKIGKVAYKLQLPDTAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGIL 313
            +LAKIG VAYKL+LP  A+IH VFHVSQLK F GT  +PY+PLPLT  E GP+++P  IL
Sbjct: 1388 VLAKIGDVAYKLELPSAARIHPVFHVSQLKPFNGTAQDPYLPLPLTVTEMGPVMQPVKIL 1447

Query: 312  KTRTILRNEQQVPQVLVKWQHLQVAEATWEDKNEMAIQYPNLNLEDKIALEGEGDVMNNK 133
             +R I+R   Q+ Q+LV+W++    EATWED  ++   YP  NLEDK+  +GEG+V N  
Sbjct: 1448 ASRIIIRGHNQIEQILVQWENGLQDEATWEDIEDIKASYPTFNLEDKVVFKGEGNVTNGM 1507

Query: 132  SVNE 121
            S  E
Sbjct: 1508 SRGE 1511


>gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1535

 Score = 1832 bits (4746), Expect = 0.0
 Identities = 892/1432 (62%), Positives = 1099/1432 (76%), Gaps = 5/1432 (0%)
 Frame = -1

Query: 4404 SSTPFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIASVHLDQEVVPWFQ 4225
            S  PFQVR++KL+FPRF+G NV +WIF+AEQFF YY+TPD +RL IASVHLD++VVPW+Q
Sbjct: 67   SRPPFQVRNVKLEFPRFDGTNVHEWIFRAEQFFEYYDTPDLDRLTIASVHLDKDVVPWYQ 126

Query: 4224 MVNRSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYYLEFTALSNRVYGI 4045
            MV R+ PF +W++FTRALELDFGPS+YDCPRA+LFKL+Q+ +V EYYL+FT+L+NRVYG+
Sbjct: 127  MVQRTHPFTSWIEFTRALELDFGPSVYDCPRATLFKLKQTGTVAEYYLQFTSLANRVYGL 186

Query: 4044 SNDALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXANTNVQNQKYNAGST 3865
            SNDALIDCFVSGL DE+RRDV++HTP S+                 N N +N   +  + 
Sbjct: 187  SNDALIDCFVSGLNDEIRRDVLIHTPISLVKAMSLAKVYEEKYSYNNKNQKNYSNSYSTN 246

Query: 3864 AVQARAPFNPTRNSQTQATEKAXXXXXXXXXXXXPMSQLQKNPAIKRIS-AEMQLRREKG 3688
                  P   TRN+                    PMSQ Q NP IKR+S AE QLRR+KG
Sbjct: 247  KPNTNKPDYTTRNTAP----------ILNTPPTRPMSQFQNNPNIKRMSQAERQLRRDKG 296

Query: 3687 LCYFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDDDREIQK----PVEHHLSL 3520
            LCY+CDDKFSF+H+CPN+ LML++            Q     +  I+       EHHLSL
Sbjct: 297  LCYWCDDKFSFTHKCPNRQLMLIQNDDDLDADQVLDQLTQTTETTIKSLDTNQPEHHLSL 356

Query: 3519 NALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPIEPVTRCNVLVGN 3340
            NA+ G + MGV+RF G I  + V IL+DGGSSD+F+QPRIA  L LPIEP  + NVLVGN
Sbjct: 357  NAMKGTSNMGVLRFAGSIEHIGVQILIDGGSSDNFLQPRIAKFLKLPIEPGPQFNVLVGN 416

Query: 3339 GQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYATSKLRF 3160
            G+ M AEGVIQNL + +QG  + VP +LLPVAG+DVILGA WLA+LGPHVADYA+  L+F
Sbjct: 417  GEIMTAEGVIQNLPLEIQGHKLEVPVFLLPVAGADVILGASWLATLGPHVADYASLTLKF 476

Query: 3159 YLEGKFVTLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAPEDNWKDMPVTVE 2980
            +L+ KFVTL G   P+   AQ H FKRL + D+I+E FT+Q +++    D +KD+P   E
Sbjct: 477  FLKDKFVTLTGQAVPRPTPAQFHHFKRLANTDSIAECFTVQCLKSTDDADIFKDLPTNTE 536

Query: 2979 PEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHSQKEQIEKMVQE 2800
            PE+A LLYTY+ VF+ P  LPP R  +H I L EGA PVKVKPYRYPHSQKEQIE M+Q+
Sbjct: 537  PEIAMLLYTYKNVFKTPTALPPDRFHNHTIPLIEGATPVKVKPYRYPHSQKEQIEAMIQD 596

Query: 2799 MLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHG 2620
            ML +G             +LVKKKDGTWR CTDYRALNAIT+KDSFP+PTVDELLDEL G
Sbjct: 597  MLHQGIIQNSTSPFSSPIVLVKKKDGTWRFCTDYRALNAITVKDSFPIPTVDELLDELFG 656

Query: 2619 AKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPATFQRLMNEIFQ 2440
            AK+FSK DLRSGYHQIL++PEDR KTAFRTHQGHYEWLVMPFGLTNAPATFQ LMN IFQ
Sbjct: 657  AKYFSKLDLRSGYHQILLQPEDRHKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQ 716

Query: 2439 PFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSFGLTEVEYLGHT 2260
              LRK VLVFFDDIL+YS +W  HLQ ++ VL++L +++LY KLSKC+FG+ E+EYLGH 
Sbjct: 717  HALRKYVLVFFDDILIYSNTWQDHLQHLDVVLRVLQENILYVKLSKCNFGVLEIEYLGHV 776

Query: 2259 VSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIAGPLTNLLKKDA 2080
            V+G GVSMD++KV AVL+WP P N+KQLRGFLGLTGYYRRFIK+YA IA PLT+LLKK+A
Sbjct: 777  VTGQGVSMDKDKVQAVLNWPTPMNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEA 836

Query: 2079 FQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLSQGGHPIAFFSK 1900
            +QWN   + AF+QLK AIT+APVL LP+F  PF+LETDASG G+GAVL Q GHPIA+FSK
Sbjct: 837  YQWNAQAEEAFKQLKNAITTAPVLALPNFKLPFILETDASGVGIGAVLHQQGHPIAYFSK 896

Query: 1899 KMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXXXXXQTPEQQAW 1720
            K+ PR Q +SAY RE  AI  A+AKFRHYLLGHKFI+RT             QTP+QQ W
Sbjct: 897  KLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRSLMEQSLQTPDQQEW 956

Query: 1719 LHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVATNEHLKMIVQQ 1540
            LHKF+GYDF IEYKPGK+N AADALSR+MT+SWS P+  F+E+++  +  +  ++ I+ +
Sbjct: 957  LHKFLGYDFTIEYKPGKENMAADALSRIMTLSWSEPKCQFIEQIRVALQNDNQMREILMK 1016

Query: 1539 CEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHAGVTRTLARIGA 1360
            C     A   Y+++ GLLYWKQ+LVIP ++ L+ ++L E+H SPIGGHAG+TRT+ARI +
Sbjct: 1017 CNAGK-APVQYSMRDGLLYWKQRLVIPKDNDLLYKVLFEFHTSPIGGHAGITRTMARIKS 1075

Query: 1359 QFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVTMDFITGLPPSH 1180
            QFYWP M+QD+ +YV  C+VCQQAK+  T+ AGLL+PLPIP+QVW+D+ MDFITGLP S 
Sbjct: 1076 QFYWPDMKQDIIDYVQKCMVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSS 1135

Query: 1179 GYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSIISDRDRVFTSKF 1000
            GYT IMVVVDRLTK+AHFIPMK+DY+SKSVAE+FMH++V+LHGMPKSI+SDRD+VFTS F
Sbjct: 1136 GYTTIMVVVDRLTKYAHFIPMKSDYTSKSVAESFMHNIVKLHGMPKSIVSDRDKVFTSAF 1195

Query: 999  WQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWYKALCWAELWYN 820
            WQ LF+LQGT+LAMSSAYHPQ+DGQ+E +NK LE++LRCFTF+NPKSW K L WAE WYN
Sbjct: 1196 WQQLFKLQGTSLAMSSAYHPQSDGQTEVLNKALELFLRCFTFHNPKSWSKVLSWAEYWYN 1255

Query: 819  TSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVITELKRNLARAQQI 640
            T+  TS GM+PFKALYGR+PP LT+Y A  +DP  LQ++L++RD ++ +LK NL RAQQ 
Sbjct: 1256 TAFQTSIGMTPFKALYGRDPPYLTKYEAQVTDPPALQEELMERDKILQQLKSNLDRAQQY 1315

Query: 639  MKNNADKKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPFTILAKIGKVAYK 460
            MK  ADK R+DV F+VGD VLVKLQPYRQ SVALRKNQKLGMRYFGPF I+A IG VAYK
Sbjct: 1316 MKKQADKHRKDVTFQVGDLVLVKLQPYRQQSVALRKNQKLGMRYFGPFEIIACIGAVAYK 1375

Query: 459  LQLPDTAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGILKTRTILRNEQQ 280
            L+LPD AKIH VFHVSQLK FKG  ++ Y+PLPLT  E GPI++P  +L+ RTI+R  Q+
Sbjct: 1376 LKLPDNAKIHPVFHVSQLKPFKGAASDQYLPLPLTMTETGPIMQPIAVLQARTIMRGTQR 1435

Query: 279  VPQVLVKWQHLQVAEATWEDKNEMAIQYPNLNLEDKIALEGEGDVMNNKSVN 124
            V Q+LV+W     AEATWED +++ +++P LNLEDK+   GEG VM   + N
Sbjct: 1436 VHQILVQWDTNAEAEATWEDFDDLQLKFPTLNLEDKVVFNGEGIVMRPNTTN 1487


>gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1502

 Score = 1814 bits (4699), Expect = 0.0
 Identities = 897/1532 (58%), Positives = 1127/1532 (73%), Gaps = 10/1532 (0%)
 Frame = -1

Query: 4689 LTTELRRQAETIEKNEAASRARFEELSSMQKASEARFNQLADAFEKLMQQTPTVTHGGTN 4510
            +  EL+R AE +   +A     FE L   + A++ +F+++  A + L+ Q+P+  H G  
Sbjct: 9    IEAELKRNAEDMRLYQAEM---FERLERSEAANKEKFDKIFTAIDILIDQSPSKHHHGAG 65

Query: 4509 SGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPTMSSTPFQVRHIKLDFPRFNGKNVLDW 4330
                                               +  PFQVR++KL+FPRF+G NV +W
Sbjct: 66   LNN--------------------------------NRPPFQVRNVKLEFPRFDGTNVHEW 93

Query: 4329 IFKAEQFFGYYNTPDTERLIIASVHLDQEVVPWFQMVNRSRPFQTWMDFTRALELDFGPS 4150
            IF+AEQFF YY+TPD++RL I+SVHLD++VVPW+QMV R RPF +W++FTRALELDFGPS
Sbjct: 94   IFRAEQFFDYYDTPDSDRLTISSVHLDKDVVPWYQMVQRLRPFTSWVEFTRALELDFGPS 153

Query: 4149 MYDCPRASLFKLQQSKSVNEYYLEFTALSNRVYGISNDALIDCFVSGLKDELRRDVMLHT 3970
            +YDCPRA+LFKL Q+ +V EYYL+FT+L+NRVYG+SNDA++DCFVSGL +++RRDV++HT
Sbjct: 154  VYDCPRATLFKLSQTGTVAEYYLQFTSLANRVYGLSNDAMVDCFVSGLNNQIRRDVLIHT 213

Query: 3969 PTSITXXXXXXXXXXXXXXXANTNVQNQKY----NAGSTAVQARAPFNPTRNSQTQATEK 3802
            P S+                    V  +KY    N     +   +   P  N    AT  
Sbjct: 214  PPSLVKAVSL------------AKVYEEKYADAMNTQKATINNHSTNKPFINKPEIATRN 261

Query: 3801 AXXXXXXXXXXXXPMSQLQKNPAIKRIS-AEMQLRREKGLCYFCDDKFSFSHRCPNKHLM 3625
                          MSQ QKNP IKR+S AE Q+RR+KGLCY+CD+KFSF+H+CPN+ ++
Sbjct: 262  TAPILNTPPTRP--MSQFQKNPNIKRMSPAERQVRRDKGLCYWCDEKFSFTHKCPNRQML 319

Query: 3624 LLELXXXXXXXXXXXQANSDDDR-----EIQKPVEHHLSLNALNGATGMGVIRFKGCIGP 3460
            LL+               +  ++     +     EHHLSLNAL G + MGVIRF G I  
Sbjct: 320  LLQYDDDDNDADQVFDTLTQTEQVTTNGQTTNLPEHHLSLNALKGTSNMGVIRFAGSIEH 379

Query: 3459 VDVSILLDGGSSDSFIQPRIAHCLNLPIEPVTRCNVLVGNGQKMQAEGVIQNLTVRVQGI 3280
            + V IL+DGGSSD+F+QPRIA  L LPIEP  + NVLVGNG+ M AEG+IQ L + +QG 
Sbjct: 380  IGVQILIDGGSSDNFMQPRIAKFLKLPIEPGPQFNVLVGNGEVMSAEGMIQKLPLHIQGH 439

Query: 3279 DITVPAYLLPVAGSDVILGAPWLASLGPHVADYATSKLRFYLEGKFVTLQGDTDPKTAIA 3100
             I VP YLLP+AG+DVILGA WLA+LGPHVADYA+  L+F+L+G+FVTL G+   + + A
Sbjct: 440  VIEVPVYLLPIAGADVILGASWLATLGPHVADYASLTLKFFLKGQFVTLTGEPMCRPSQA 499

Query: 3099 QLHQFKRLQHMDAISELFTLQQIEAVAPEDNWKDMPVTVEPEMATLLYTYREVFQVPKGL 2920
            QLH FKRL   D+I+E FT+Q I+    ED +KD+P  +EPE+A LL+ YR +FQ P  L
Sbjct: 500  QLHHFKRLATTDSIAECFTVQCIKPTVEEDIFKDLPDNIEPEIAMLLHQYRGLFQTPTTL 559

Query: 2919 PPPRELSHEILLKEGAPPVKVKPYRYPHSQKEQIEKMVQEMLEEGXXXXXXXXXXXXXIL 2740
            PP R  +H I L EG+ PVKVKPYRYPHSQK+QIE M+QEML++G             IL
Sbjct: 560  PPNRSHNHSIPLLEGSAPVKVKPYRYPHSQKQQIELMIQEMLQQGIIQNSNSPFSSPIIL 619

Query: 2739 VKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAKFFSKFDLRSGYHQILVKP 2560
            VKKKDGTWR CTDYRALNAIT+KD FP+PTVDELLDELHGAK+FSK DLRSGYHQIL++P
Sbjct: 620  VKKKDGTWRFCTDYRALNAITVKDCFPIPTVDELLDELHGAKYFSKLDLRSGYHQILLQP 679

Query: 2559 EDRQKTAFRTHQGHYEWLVMPFGLTNAPATFQRLMNEIFQPFLRKCVLVFFDDILVYSPS 2380
            EDR KTAFRTHQGHYEWLVMPFGLTNAPATFQ LMN IFQ  LRK VLVFFDDIL+YS +
Sbjct: 680  EDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALRKYVLVFFDDILIYSSN 739

Query: 2379 WHTHLQQVECVLQILSQHVLYAKLSKCSFGLTEVEYLGHTVSGSGVSMDRNKVNAVLDWP 2200
            W  HL  ++ VL +L  + LY KLSKCSFG+ E+EYLGH V+G GVSMD++KV AV++WP
Sbjct: 740  WQEHLHHLDTVLTVLQDNTLYVKLSKCSFGVLEIEYLGHVVTGQGVSMDKDKVQAVVNWP 799

Query: 2199 VPSNLKQLRGFLGLTGYYRRFIKAYASIAGPLTNLLKKDAFQWNENTQLAFEQLKKAITS 2020
             PSN+KQLRGFLGLTGYYRRFIK+YA IA PLT+LLKK+A+QW E  ++AF QLK AIT+
Sbjct: 800  TPSNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYQWTEQAEVAFHQLKNAITT 859

Query: 2019 APVLILPDFSQPFVLETDASGTGVGAVLSQGGHPIAFFSKKMAPRMQLQSAYTREFYAIT 1840
            APVLILP+F +PF+LETDASG G+GAVL Q GHPIA+FSKK+ PR Q +SAY RE  AI 
Sbjct: 860  APVLILPNFKEPFILETDASGIGIGAVLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIA 919

Query: 1839 AALAKFRHYLLGHKFILRTXXXXXXXXXXXXXQTPEQQAWLHKFIGYDFQIEYKPGKDNQ 1660
             A+AKFRHYLLGHKFI+RT             QTPEQQ WLHKF+GYDF IEYKPGK+N 
Sbjct: 920  EAIAKFRHYLLGHKFIIRTDQKSLRNLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENM 979

Query: 1659 AADALSRLMTMSWSGPENVFLEELKKEVATNEHLKMIVQQCEQNTVADRNYAVKAGLLYW 1480
            AADALSR+M M+WS P+   L+++++ +  +  L+ ++Q       A   Y+++ GLLYW
Sbjct: 980  AADALSRVMVMAWSEPKWQLLDQVRRALENDNQLREVMQNYAIGK-APVQYSMREGLLYW 1038

Query: 1479 KQKLVIPLESKLIQQILKEYHDSPIGGHAGVTRTLARIGAQFYWPKMRQDVKEYVAACIV 1300
            KQ+LVIP    L+Q++L E+H SPIGGHAG+TRT+ARI AQFYWP M++D+ EYV  C+V
Sbjct: 1039 KQRLVIPKNDDLLQKLLFEFHTSPIGGHAGITRTIARIKAQFYWPDMKKDIAEYVHKCVV 1098

Query: 1299 CQQAKSATTAYAGLLEPLPIPNQVWDDVTMDFITGLPPSHGYTVIMVVVDRLTKFAHFIP 1120
            CQQAK+  T+ AGLL+PLPIP+QVW+D+ MDFITGLP S+GYT IMVVVDRLTK AHFIP
Sbjct: 1099 CQQAKTTNTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSYGYTTIMVVVDRLTKSAHFIP 1158

Query: 1119 MKTDYSSKSVAEAFMHSVVRLHGMPKSIISDRDRVFTSKFWQNLFELQGTTLAMSSAYHP 940
            MKTDY+SK+VAEAFMH++V+LHGMPKSI+SDRD+VFTS FWQ+LF++QGT+LAMSSAYHP
Sbjct: 1159 MKTDYTSKTVAEAFMHNIVKLHGMPKSIVSDRDKVFTSAFWQHLFKMQGTSLAMSSAYHP 1218

Query: 939  QTDGQSEAVNKCLEMYLRCFTFNNPKSWYKALCWAELWYNTSHHTSAGMSPFKALYGREP 760
            QTDGQ+E +NK LE++LRCFTF+NPKSW+K + WAE WYNT+  TS GM+PFKALYGR+P
Sbjct: 1219 QTDGQTEVLNKTLELFLRCFTFHNPKSWFKVMSWAEYWYNTAFQTSIGMTPFKALYGRDP 1278

Query: 759  PMLTRYAANSSDPVELQQQLLDRDAVITELKRNLARAQQIMKNNADKKRRDVVFEVGDQV 580
            P LT+Y     DP  L+++L++RD ++ +LK NL RAQQ MK  ADK RR+V F+VGD V
Sbjct: 1279 PYLTKYEVQVDDPPALREELMERDQILQQLKTNLERAQQYMKQQADKHRREVSFKVGDLV 1338

Query: 579  LVKLQPYRQTSVALRKNQKLGMRYFGPFTILAKIGKVAYKLQLPDTAKIHSVFHVSQLKL 400
            LVKLQPY+Q SVALRKNQKLGMRYFGPF ++A +GKVAYKLQLP+ AKIH VFHVSQLK 
Sbjct: 1339 LVKLQPYKQQSVALRKNQKLGMRYFGPFEVIACVGKVAYKLQLPENAKIHPVFHVSQLKP 1398

Query: 399  FKGTMTEPYIPLPLTTVEEGPILEPEGILKTRTILRNEQQVPQVLVKWQHLQVAEATWED 220
            F GT  E Y+PLPLT  + GPI +P  IL+ RTI+R  ++V Q+ ++W      EA+WED
Sbjct: 1399 FHGTSQEQYLPLPLTMSDTGPIFQPATILQARTIVRGNKKVHQLQIQWDLNSPEEASWED 1458

Query: 219  KNEMAIQYPNLNLEDKIALEGEGDVMNNKSVN 124
             +E+  ++PN+NLEDK+  +GEG VM   + N
Sbjct: 1459 LDELQNKFPNINLEDKVVFKGEGIVMRPNNTN 1490


>dbj|GAU11620.1| hypothetical protein TSUD_346120 [Trifolium subterraneum]
          Length = 1479

 Score = 1795 bits (4649), Expect = 0.0
 Identities = 884/1488 (59%), Positives = 1100/1488 (73%), Gaps = 4/1488 (0%)
 Frame = -1

Query: 4623 FEELSSMQKASEARFNQLADAFEKLMQQTPTVTHGGTNSGXXXXXXXXXXXXXXXXXXXX 4444
            FE +  ++ A+ ++F+++  A + L+ QTP+    G                        
Sbjct: 28   FERMERLELANASKFDKIFSALDVLIDQTPSKHRHGIG---------------------- 65

Query: 4443 XXXXXXXXTIPTMSSTPFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIA 4264
                        +S  PFQVR++KL+FPRF+G NV +WIF+AEQFF YY+TPD +RL I+
Sbjct: 66   ------------LSKAPFQVRNVKLEFPRFDGSNVHEWIFRAEQFFDYYDTPDHDRLTIS 113

Query: 4263 SVHLDQEVVPWFQMVNRSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYY 4084
            SVHLD++VVPW+QM+ R+ PF +W++ TRALELDFGPS+YDCPRA+LFKL+QS SV+EYY
Sbjct: 114  SVHLDKDVVPWYQMMQRTHPFTSWIELTRALELDFGPSIYDCPRATLFKLKQSGSVSEYY 173

Query: 4083 LEFTALSNRVYGISNDALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXAN 3904
            ++FT+L+NRVYG+SNDALIDCFVSGL DE+RRDV++HTP+S+                 N
Sbjct: 174  MKFTSLANRVYGLSNDALIDCFVSGLSDEIRRDVLIHTPSSLVKAVSLAKVYEEKYAM-N 232

Query: 3903 TNVQNQKYNAGSTAVQARAPFNPTRNSQTQATEKAXXXXXXXXXXXXPMSQLQKNPAIKR 3724
            +  Q + Y+  ST         P  N    AT  +             MSQ QKNP IKR
Sbjct: 233  SKSQTRNYSNYSTN-------KPLYNKSEIATRNSAPILNTPPTRP--MSQYQKNPNIKR 283

Query: 3723 IS-AEMQLRREKGLCYFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDD---DR 3556
            IS AEMQ+RR+KGLCY+CD+KFSF+H+CPN+ LMLL                 +    D 
Sbjct: 284  ISPAEMQVRRDKGLCYWCDEKFSFTHKCPNRQLMLLHYDDSDEEQLVEPSITLEPKTIDS 343

Query: 3555 EIQKPVEHHLSLNALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPI 3376
             I    +HHLSLNA+ G   MGV+RF G I    V +L+DGGSSD+F+QPRIA  L LPI
Sbjct: 344  SITNTPDHHLSLNAMKGNNTMGVLRFTGAIEQFKVQVLIDGGSSDNFLQPRIAKFLKLPI 403

Query: 3375 EPVTRCNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGP 3196
            EP     VLVGNG+ M AEGVIQ L + +QG  I +P +LLPV G+D++LGA WLA+LGP
Sbjct: 404  EPGPTFRVLVGNGEIMTAEGVIQELPLDIQGHKIHIPVFLLPVVGADIVLGASWLATLGP 463

Query: 3195 HVADYATSKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAP 3016
            HVADYA+  L+F+LEGKFVTL G+ + +   AQLHQFKR  + DAI+E FT+Q I+   P
Sbjct: 464  HVADYASLTLKFFLEGKFVTLVGEHENRPVTAQLHQFKRFHNTDAIAECFTIQCIKTTEP 523

Query: 3015 EDNWKDMPVTVEPEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPH 2836
             D   ++P  +EPE+A LL+ Y ++FQ P  LPP R  +H I L EG+ PVKVKPYRYPH
Sbjct: 524  ADILHELPSNMEPELAILLHNYSKLFQSPAVLPPSRSHNHCIPLIEGSSPVKVKPYRYPH 583

Query: 2835 SQKEQIEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPM 2656
            SQK QIE MV++ML++G             +LVKKKDGTWR CTDYRALNAITIKDSF +
Sbjct: 584  SQKAQIEIMVEDMLQQGIIQPSTSPFSSPIVLVKKKDGTWRFCTDYRALNAITIKDSFLI 643

Query: 2655 PTVDELLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAP 2476
            PTVDELLDEL GAK+FSK DLRSGYHQIL++PEDR KTAFRTH GHYEWLVMPFGLTNAP
Sbjct: 644  PTVDELLDELFGAKYFSKLDLRSGYHQILLQPEDRFKTAFRTHHGHYEWLVMPFGLTNAP 703

Query: 2475 ATFQRLMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCS 2296
            ATFQ LMN IFQ  LRK VLVFFDDIL+YS SWH HLQ +  VL++L  + L+ KLSKCS
Sbjct: 704  ATFQSLMNHIFQQALRKYVLVFFDDILIYSSSWHDHLQHLNKVLEMLQANTLFVKLSKCS 763

Query: 2295 FGLTEVEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASI 2116
            FG+ E++YLGH V+G GV+M+++KV AVLDWP P N+KQLRGFLGLTGYYRRFIK+YA I
Sbjct: 764  FGVNEIDYLGHIVTGQGVTMEKSKVQAVLDWPTPGNIKQLRGFLGLTGYYRRFIKSYAKI 823

Query: 2115 AGPLTNLLKKDAFQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVL 1936
            A PLT+LLKK+A++WNE  + AF+QLK A+TSAPVL LP+F++PF+LETDASG G+GAVL
Sbjct: 824  AAPLTDLLKKEAYKWNEQAEAAFQQLKIAVTSAPVLALPNFNEPFILETDASGIGIGAVL 883

Query: 1935 SQGGHPIAFFSKKMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXX 1756
             Q  HPIA+FSKK+ PR Q +SAY RE  AI  A+AKFRHYLLGHKFI+RT         
Sbjct: 884  HQNNHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRSLM 943

Query: 1755 XXXXQTPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEV 1576
                QTP+QQ WLHKF+GYDF IEYKPGKDN AADALSR+M M WS P+  +++++K  +
Sbjct: 944  EQSLQTPDQQEWLHKFLGYDFTIEYKPGKDNLAADALSRMMCMGWSEPQCSWIQQIKTAL 1003

Query: 1575 ATNEHLKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGH 1396
              +  L  I+QQCEQ    + +Y V+ GLLYWK ++VIP++  L+QQ+LKE+H SPIGGH
Sbjct: 1004 QQDTTLMEIIQQCEQGQ-TNTHYTVRDGLLYWKHRIVIPVDDALLQQVLKEFHSSPIGGH 1062

Query: 1395 AGVTRTLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDV 1216
            AG+TRTLARI AQFYWP M+QD+ +YV  C+VCQQ K+  T  AGLL+PLPIP+Q+W+D+
Sbjct: 1063 AGMTRTLARIQAQFYWPNMKQDIVQYVQNCLVCQQTKTTNTLPAGLLQPLPIPSQIWEDL 1122

Query: 1215 TMDFITGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSI 1036
             MDFITGLP SHGYTVI+VVVDRLTK+AHFIPMKTDYSSKSVAE FM +VV+LHG+PKSI
Sbjct: 1123 AMDFITGLPSSHGYTVILVVVDRLTKYAHFIPMKTDYSSKSVAEVFMQNVVKLHGLPKSI 1182

Query: 1035 ISDRDRVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSW 856
            +SDRD+VFTS FWQ LF+LQGTTLAMSSAYHPQ+DGQSE +NK LE+YLRCF+FNNPK+W
Sbjct: 1183 VSDRDKVFTSAFWQQLFKLQGTTLAMSSAYHPQSDGQSEVLNKTLELYLRCFSFNNPKAW 1242

Query: 855  YKALCWAELWYNTSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVIT 676
             K L W+E WYNT+  TS GM+PFKA+YGR+PP L RY A  SDP  L+ +L++RD ++ 
Sbjct: 1243 SKMLSWSEFWYNTAFQTSIGMTPFKAVYGRDPPYLNRYVAQDSDPPTLRAELMERDTILQ 1302

Query: 675  ELKRNLARAQQIMKNNADKKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPF 496
            +LK NL +AQQ MK  ADK R ++ F++GD VLVKLQPYRQ SVALRKNQKLG+RYFGPF
Sbjct: 1303 QLKNNLLKAQQYMKKQADKHRIELQFQIGDLVLVKLQPYRQHSVALRKNQKLGLRYFGPF 1362

Query: 495  TILAKIGKVAYKLQLPDTAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGI 316
             I+AK+G VAYKL+LPD AKIH VFHVSQLK FKG   E Y PLPLT  E GP+ +P  +
Sbjct: 1363 EIIAKVGAVAYKLKLPDYAKIHPVFHVSQLKPFKGFTNEQYFPLPLTMTEIGPLSQPIDV 1422

Query: 315  LKTRTILRNEQQVPQVLVKWQHLQVAEATWEDKNEMAIQYPNLNLEDK 172
            L+ RTI++  ++V QVL++W      EA+WED +++  ++P  NLEDK
Sbjct: 1423 LQVRTIIKGTKKVHQVLIQWDQYPREEASWEDADDVLNKFPAFNLEDK 1470


>dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subterraneum]
          Length = 1512

 Score = 1783 bits (4618), Expect = 0.0
 Identities = 886/1503 (58%), Positives = 1095/1503 (72%), Gaps = 6/1503 (0%)
 Frame = -1

Query: 4623 FEELSSMQKASEARFNQLADAFEKLMQQTPTVTHGGTNSGXXXXXXXXXXXXXXXXXXXX 4444
            FE L   + A+  +F ++  A + L+ QTP+  + G                        
Sbjct: 28   FERLERSEAANAEKFAKIFTALDILIDQTPSKQNHG------------------------ 63

Query: 4443 XXXXXXXXTIPTMSSTPFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIA 4264
                     I   + TPFQVR++KL+FPRF+G NV +WIF+AEQFF YY+TPD +RL IA
Sbjct: 64   ---------IGLNNRTPFQVRNVKLEFPRFDGNNVHEWIFRAEQFFDYYDTPDLDRLTIA 114

Query: 4263 SVHLDQEVVPWFQMVNRSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYY 4084
            SVHLD++VVPW+QMV R+ PFQ+WMDFTRALELDFGPS+Y+CPRA+LFKL Q+ +V EYY
Sbjct: 115  SVHLDKDVVPWYQMVQRTTPFQSWMDFTRALELDFGPSIYECPRATLFKLNQTGTVAEYY 174

Query: 4083 LEFTALSNRVYGISNDALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXAN 3904
            L+FT+L+NRVYG+SNDALIDCF+SGL  ++RRDV++HTP SI                  
Sbjct: 175  LQFTSLANRVYGLSNDALIDCFISGLSADIRRDVLIHTPNSIVKAVSLAKVYEEKYTTTL 234

Query: 3903 TNVQNQKYNAGSTAVQARAPFNPTRNSQTQATEKAXXXXXXXXXXXXPMSQLQKNPAIKR 3724
               +  + N  +       P N TRNS                    PMSQ QKNP IKR
Sbjct: 235  KPQKTYQNNYSNIKPLTTKPENSTRNSAP----------ILNTPPTRPMSQFQKNPNIKR 284

Query: 3723 IS-AEMQLRREKGLCYFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDD----- 3562
            IS AEMQ+RR+KGLCY+CD+KFSF+H+CPN+ LMLL+                D      
Sbjct: 285  ISPAEMQIRRDKGLCYWCDEKFSFTHKCPNRQLMLLQYDDNETQLFDGSPEPPDSPTNSL 344

Query: 3561 DREIQKPVEHHLSLNALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNL 3382
            D  I    +HHLS+NA+ G + MGVIRF G I  ++V IL+DGGSSD+F+QPRIA  L L
Sbjct: 345  DTNIP---DHHLSMNAMKGTSNMGVIRFVGSIEHIEVQILIDGGSSDNFVQPRIAKFLKL 401

Query: 3381 PIEPVTRCNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASL 3202
            PIEP     VLVGNG+ M AEGVI+ L + +QG  + VPA+LLPVAG DV+LGA WLA+L
Sbjct: 402  PIEPAPVFKVLVGNGEIMNAEGVIKQLPIDIQGHKLEVPAFLLPVAGVDVVLGASWLATL 461

Query: 3201 GPHVADYATSKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAV 3022
            GPHVADYA+  L+F+L GKFVTL G+   +    Q H  KR  +  AI+E F +Q+++  
Sbjct: 462  GPHVADYASLTLKFFLNGKFVTLVGEPLARPEPTQFHHLKRCCNTKAIAECFIVQRLKTT 521

Query: 3021 APEDNWKDMPVTVEPEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRY 2842
               D +K++P   EPE+A LL+ Y+EVF+ P GLPP R  +H I L EG+ PVKVKPYRY
Sbjct: 522  EATDIFKELPTNTEPEIAMLLHNYQEVFKTPNGLPPTRAHNHSIPLLEGSNPVKVKPYRY 581

Query: 2841 PHSQKEQIEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSF 2662
            PHSQK QIE MVQ+ML++G             ILVKKKDGTWR CTDYRALNAIT+KDSF
Sbjct: 582  PHSQKTQIEHMVQDMLQQGIIQPSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDSF 641

Query: 2661 PMPTVDELLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTN 2482
            P+PTVDELLDEL GAK FSK DLRSGYHQIL++PEDR KTAFRTHQGHYEWLVMPFGLTN
Sbjct: 642  PIPTVDELLDELFGAKHFSKLDLRSGYHQILLQPEDRYKTAFRTHQGHYEWLVMPFGLTN 701

Query: 2481 APATFQRLMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSK 2302
            APATFQ LMN IFQ  LRK VLVFFDDILVYS +W  HL+ +  VLQ+L  + L+ KLSK
Sbjct: 702  APATFQSLMNTIFQNVLRKYVLVFFDDILVYSKTWQEHLKHLAAVLQVLQDNELFVKLSK 761

Query: 2301 CSFGLTEVEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYA 2122
            CSFG++E+EYLGH V+G GVSMD+ K+ AVLDWP P N+KQLRGFL LTGYYRRFI++YA
Sbjct: 762  CSFGVSEIEYLGHVVNGQGVSMDKEKIQAVLDWPPPKNIKQLRGFLCLTGYYRRFIQSYA 821

Query: 2121 SIAGPLTNLLKKDAFQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGA 1942
             IA PLT+LLKK+A+ W    + AF+QLK AITSAPVL LP+F++ F+LETDASG G+GA
Sbjct: 822  KIASPLTDLLKKEAYVWTTQAKAAFQQLKNAITSAPVLALPNFTKTFILETDASGVGIGA 881

Query: 1941 VLSQGGHPIAFFSKKMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXX 1762
            VL Q GHPIA+FSKK+ PR Q +SAY RE  AI  A+AKFRHYLLGHKFI+RT       
Sbjct: 882  VLHQEGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRN 941

Query: 1761 XXXXXXQTPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKK 1582
                  QTP+QQ WLH+F+GYDF IEYKPGKDN  ADALSR+MT++WS P+   L ++K 
Sbjct: 942  LMEQTLQTPDQQEWLHRFLGYDFSIEYKPGKDNVVADALSRVMTLAWSEPQFRLLHQIKA 1001

Query: 1581 EVATNEHLKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIG 1402
                +  L  I  +C Q++    +Y +K  LL+WKQ++VIP +  LIQQ+L E H SP+G
Sbjct: 1002 IQKQDPTLVKIRMECAQHSQPGSHYTIKDDLLFWKQRIVIPHDGALIQQVLYELHTSPLG 1061

Query: 1401 GHAGVTRTLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWD 1222
            GHAG+TRT+AR+ AQFYW  M++D+ EYV  C +CQ+AK+A T  AGLL+PLPIP+QVW+
Sbjct: 1062 GHAGITRTVARVKAQFYWSDMKKDIVEYVQNCEICQKAKTANTLPAGLLQPLPIPSQVWE 1121

Query: 1221 DVTMDFITGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPK 1042
            DV MDFITGLP SHGYTVI+VV+DRLTK+AHFIP+KTDY+SK VAEAFMH +V+LHGMPK
Sbjct: 1122 DVAMDFITGLPLSHGYTVILVVIDRLTKYAHFIPLKTDYTSKIVAEAFMHHIVKLHGMPK 1181

Query: 1041 SIISDRDRVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPK 862
            SI+SDRD+VFTS FWQ LF+LQGT+LAMSSAYHPQ+DGQSE +N+ LE++LRCFTFNNPK
Sbjct: 1182 SIVSDRDKVFTSNFWQQLFKLQGTSLAMSSAYHPQSDGQSEVLNRTLELFLRCFTFNNPK 1241

Query: 861  SWYKALCWAELWYNTSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAV 682
            +WYKAL W+E WYNT+  TS GM+PFKALYGR+PP L RY A + DP  LQ++L+ RD +
Sbjct: 1242 AWYKALSWSEFWYNTAFQTSIGMTPFKALYGRDPPTLVRYEAQAGDPPALQEELMGRDKL 1301

Query: 681  ITELKRNLARAQQIMKNNADKKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFG 502
            + +LK NL RAQQ MK  ADK RRD+  +VGD VLVKLQPYRQ S+ALRKNQKLGMRYFG
Sbjct: 1302 LQQLKSNLERAQQYMKRQADKHRRDIKLQVGDLVLVKLQPYRQQSLALRKNQKLGMRYFG 1361

Query: 501  PFTILAKIGKVAYKLQLPDTAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPE 322
            PF ILAK+G+VAYKL+LPD AKIH VFH+SQLK FKG   +  +PLPLT  + GP+++P 
Sbjct: 1362 PFEILAKVGEVAYKLKLPDHAKIHPVFHISQLKPFKGISQDQSLPLPLTMSDTGPLIQPI 1421

Query: 321  GILKTRTILRNEQQVPQVLVKWQHLQVAEATWEDKNEMAIQYPNLNLEDKIALEGEGDVM 142
             +L  RTIL+  Q+V QVL++W     AEATWE+   +  ++P  NLEDK+  +G+G VM
Sbjct: 1422 AVLAARTILKGIQKVHQVLIQWDQYPEAEATWEEVTNLQSKFPYFNLEDKVVFKGDGIVM 1481

Query: 141  NNK 133
            + K
Sbjct: 1482 SPK 1484


>dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subterraneum]
          Length = 1531

 Score = 1768 bits (4579), Expect = 0.0
 Identities = 872/1508 (57%), Positives = 1091/1508 (72%), Gaps = 8/1508 (0%)
 Frame = -1

Query: 4623 FEELSSMQKASEARFNQLADAFEKLMQQTPTVTHGGTNSGXXXXXXXXXXXXXXXXXXXX 4444
            FE L   + A+  +F ++  A + L+ QTP+    G                        
Sbjct: 28   FERLERSEAANTGKFEKIFAALDILIDQTPSKHQQGAELHHHR----------------- 70

Query: 4443 XXXXXXXXTIPTMSSTPFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIA 4264
                            PFQVR++KL+FPRF+G NV +WIF+AEQFF YY+TPD +RL IA
Sbjct: 71   ---------------APFQVRNVKLEFPRFDGTNVHEWIFRAEQFFEYYDTPDLDRLTIA 115

Query: 4263 SVHLDQEVVPWFQMVNRSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYY 4084
            +VHLD++VVPW+QM+ RS PFQ+W+DFTRALELDFGPS+YDCPRA+LFKL Q+ +V EY+
Sbjct: 116  AVHLDKDVVPWYQMMQRSHPFQSWIDFTRALELDFGPSIYDCPRATLFKLVQTGTVAEYF 175

Query: 4083 LEFTALSNRVYGISNDALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXAN 3904
            ++FT+L+NRVYG+SNDAL+DCF+SGL  ++RRDV++HTP+S+                  
Sbjct: 176  VQFTSLANRVYGLSNDALVDCFISGLNPDIRRDVLIHTPSSLVKAVSL------------ 223

Query: 3903 TNVQNQKYNAGSTAVQARAPFNPTRNSQTQATEKAXXXXXXXXXXXXP-----MSQLQKN 3739
              V  +KY   +T ++ + P+  T ++      K                   MSQ QKN
Sbjct: 224  AKVYEEKY---TTTMKPQKPYTQTYSTNKPYNNKPENSTRNTAPILNTPPTRPMSQFQKN 280

Query: 3738 PAIKRIS-AEMQLRREKGLCYFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDD 3562
            P +KRIS AEMQLRR+KGLCY+CDDKFSF+H+CPN+ LMLL+                D 
Sbjct: 281  PNVKRISPAEMQLRRDKGLCYWCDDKFSFTHKCPNRQLMLLQYEDSEDQVLDEITDPPDP 340

Query: 3561 DRE--IQKPVEHHLSLNALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCL 3388
                      + HLS++A+ G++ MGV+RF G I  + V IL+DGGSSD+F+QPRIA  L
Sbjct: 341  TTNGLTTNLPKLHLSMSAMKGSSHMGVLRFTGAIEHIQVQILIDGGSSDNFVQPRIAKFL 400

Query: 3387 NLPIEPVTRCNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLA 3208
             LPIEP     VLVGNG+ M AEG+++ L + VQG  + VP YLLPVAG+DVILGA WL+
Sbjct: 401  KLPIEPAPIFKVLVGNGEVMTAEGIVKQLPLDVQGHRLQVPVYLLPVAGADVILGASWLS 460

Query: 3207 SLGPHVADYATSKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIE 3028
            +LGPHVADYA+  ++F+L  KFVTL G+   +   AQ H  KR  H DAI E F +Q  +
Sbjct: 461  TLGPHVADYASLTIKFFLHDKFVTLVGEPIARPEPAQFHHMKRFHHTDAIEECFAIQWFK 520

Query: 3027 AVAPEDNWKDMPVTVEPEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPY 2848
                 D +K++P   +PE+A LLY Y+ VF+ P  LPP R  +H I L EG  P+KVKPY
Sbjct: 521  DTEAADIFKELPTNTDPEIAMLLYNYQAVFKTPTMLPPTRAHNHAIPLLEGTNPIKVKPY 580

Query: 2847 RYPHSQKEQIEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKD 2668
            RYPHSQK QIE MVQ+ML+ G             ILVKKKDGTWR CTDYRALNAIT+KD
Sbjct: 581  RYPHSQKTQIETMVQDMLQHGIIQPSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKD 640

Query: 2667 SFPMPTVDELLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGL 2488
            SFP+PTVDELLDEL GAK FSK DLRSGYHQIL++PEDR KTAFRTHQGHYEWLVMPFGL
Sbjct: 641  SFPIPTVDELLDELFGAKHFSKLDLRSGYHQILLQPEDRHKTAFRTHQGHYEWLVMPFGL 700

Query: 2487 TNAPATFQRLMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKL 2308
            TNAPATFQ LMN IFQ  LRK VLVFFDDILVYS +WH HL+ +  VLQ+L  + LY KL
Sbjct: 701  TNAPATFQSLMNTIFQIVLRKYVLVFFDDILVYSKTWHEHLKHLAAVLQVLKDNELYVKL 760

Query: 2307 SKCSFGLTEVEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKA 2128
            SKCSFG+ E+EYLGH VSG GV MD++K+  V+DWP P N+KQLRGFLGLTGYYRRFI++
Sbjct: 761  SKCSFGVLEIEYLGHVVSGEGVYMDKSKIQVVVDWPSPKNIKQLRGFLGLTGYYRRFIQS 820

Query: 2127 YASIAGPLTNLLKKDAFQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGV 1948
            YA IA PLT+LLKKDA+ WN   + AF++LK AIT+APVL LPDF++PF+LETDASG G+
Sbjct: 821  YAKIASPLTDLLKKDAYTWNSEMEAAFQKLKHAITTAPVLALPDFTKPFILETDASGIGI 880

Query: 1947 GAVLSQGGHPIAFFSKKMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXX 1768
            GAVL Q GHPIA+FSKK+ PR Q +SAY RE  AI  A+AKFRHYLLGHKFI+RT     
Sbjct: 881  GAVLHQEGHPIAYFSKKLVPRNQRKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSL 940

Query: 1767 XXXXXXXXQTPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEEL 1588
                    QTP+QQ WLH+F+GYDF IEYKPGK+N AADALSR+MT++WS P+   L ++
Sbjct: 941  RNLMEQALQTPDQQEWLHRFLGYDFTIEYKPGKENVAADALSRVMTLAWSEPQYKLLHQI 1000

Query: 1587 KKEVATNEHLKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSP 1408
            +  +  +  L  I+++C QN+ ++ NY +K  LL+WK ++VIP  S+L QQ+L E H SP
Sbjct: 1001 RVALKQDSTLLEIMEKCAQNSDSNSNYTIKDDLLFWKHRIVIPKHSELRQQVLYELHTSP 1060

Query: 1407 IGGHAGVTRTLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQV 1228
            IGGHAG+ RTLAR+ AQFYW  M+ D+ +YV  C++CQ+AK+  T  AGLL+PLPIP+QV
Sbjct: 1061 IGGHAGIARTLARVKAQFYWLDMKTDIAKYVQNCVICQKAKTTNTPPAGLLQPLPIPSQV 1120

Query: 1227 WDDVTMDFITGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGM 1048
            W+DV MDFITGLP SHGYT I+VV+DRLTK+AHFIP+KTDYSSK VAEAFM ++V+LHGM
Sbjct: 1121 WEDVAMDFITGLPSSHGYTTILVVIDRLTKYAHFIPLKTDYSSKIVAEAFMDNIVKLHGM 1180

Query: 1047 PKSIISDRDRVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNN 868
            PKSI+SDRD+VFTS FWQ LF+LQGT+LAMSSAYHPQ+DGQSE +NK LE++LRCFTF N
Sbjct: 1181 PKSIVSDRDKVFTSSFWQQLFKLQGTSLAMSSAYHPQSDGQSEVLNKTLELFLRCFTFEN 1240

Query: 867  PKSWYKALCWAELWYNTSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRD 688
            PKSW KAL W+E WYNT+  TS GM+PFKALYGR+PP + RY   +SD   LQ++L++RD
Sbjct: 1241 PKSWCKALAWSEFWYNTAFQTSIGMTPFKALYGRDPPAIIRYEIQASDSPTLQEKLMERD 1300

Query: 687  AVITELKRNLARAQQIMKNNADKKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRY 508
             +I +LK NL +AQQ MK  ADK R DV  +VGD VLVKLQPYRQ SVALRKNQKLGM+Y
Sbjct: 1301 RIIQQLKLNLEKAQQYMKKQADKHRVDVKLQVGDWVLVKLQPYRQQSVALRKNQKLGMKY 1360

Query: 507  FGPFTILAKIGKVAYKLQLPDTAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILE 328
            FGPF ++AK+G+VAYKL+LPD AKIH VFHVSQLK FKG   E Y+PLPL+  + GP+++
Sbjct: 1361 FGPFEVIAKVGEVAYKLKLPDHAKIHPVFHVSQLKPFKGDNQEQYMPLPLSMTDIGPMIQ 1420

Query: 327  PEGILKTRTILRNEQQVPQVLVKWQHLQVAEATWEDKNEMAIQYPNLNLEDKIALEGEGD 148
            P  +L TRTI+R  Q++ QVL++W    +AEATWED   +  ++P  NLEDK+A  G+G 
Sbjct: 1421 PVAVLATRTIIRCAQRIQQVLIQWDQYPIAEATWEDMVALQRKFPTFNLEDKVAFIGDGI 1480

Query: 147  VMNNKSVN 124
            VM+    N
Sbjct: 1481 VMSPNEEN 1488


>gb|PNY16560.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1525

 Score = 1766 bits (4573), Expect = 0.0
 Identities = 876/1535 (57%), Positives = 1103/1535 (71%), Gaps = 11/1535 (0%)
 Frame = -1

Query: 4716 MADNTRLKELTTELRRQAET-----IEKNEAASRARFEELSSMQKASEARFNQLADAFEK 4552
            M D+  LKE+  E+R+  ++     ++  +   R      + ++ +S+ R  ++  A E 
Sbjct: 1    MTDSANLKEIQDEIRQDVQSQLKKFMDNLDIRDRDIANRFTQLEDSSDDRIARIETAVES 60

Query: 4551 LMQQTPTVTHGGTNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPTMSSTPFQVRHIK 4372
            L+Q          NS                                     PFQ R++K
Sbjct: 61   LLQNAADSQRDAANS---------------------------------RHRPPFQTRNVK 87

Query: 4371 LDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIASVHLDQEVVPWFQMVNRSRPFQTW 4192
            L+FPRF+G + ++WIFKAEQFF YY TPD +RL IA+VHLDQ+VVPW+QM+ R+ PFQ+W
Sbjct: 88   LEFPRFDGNHAIEWIFKAEQFFDYYATPDEDRLTIAAVHLDQKVVPWYQMMQRTNPFQSW 147

Query: 4191 MDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYYLEFTALSNRVYGISNDALIDCFVS 4012
              FTRA+E+DFGPS+Y+CPRA+LFKL Q  +VNEYY+EFT+L+NRVYG+SN+A++DCFVS
Sbjct: 148  QIFTRAIEVDFGPSVYECPRATLFKLVQKNTVNEYYMEFTSLANRVYGLSNEAMLDCFVS 207

Query: 4011 GLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXANTNVQNQKYNAGSTAVQARAPFNPT 3832
            GL   L+R+V+ HTPTSI                 + +   QK +  +         NP 
Sbjct: 208  GLNPALQREVIAHTPTSIQRAVALAKLFEEKCQPPSKSNYYQKASTTNNP-------NPN 260

Query: 3831 RNSQ-----TQATEKAXXXXXXXXXXXXPMSQLQKNPAIKRIS-AEMQLRREKGLCYFCD 3670
            R +Q     T +T+ +                 QKN  +K IS AEMQLRREKGLCY C+
Sbjct: 261  RPTQPPLLPTPSTKPSLFT--------------QKNNIVKNISSAEMQLRREKGLCYTCE 306

Query: 3669 DKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDDDREIQKPVEHHLSLNALNGATGMG 3490
            DK+SF+H+CPNKH+MLL +           Q+N        + +E HLSLNAL GA+G+G
Sbjct: 307  DKWSFNHKCPNKHVMLLIVEDDSQIEPEIDQSNHTQIDSNHQDLELHLSLNALKGASGLG 366

Query: 3489 VIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPIEPVTRCNVLVGNGQKMQAEGVI 3310
             I+F G +    + IL+DGGSSD+F+QPRIA  L L IEP     VLVGNG  + +EG++
Sbjct: 367  TIKFTGQVSNTPLQILVDGGSSDNFLQPRIAQFLKLDIEPAPLFKVLVGNGNALTSEGIV 426

Query: 3309 QNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYATSKLRFYLEGKFVTLQ 3130
            ++L V VQG ++ +P YLLP+ G+D+ILGA WLA+LGPHVADY    L+F+ +G F+TLQ
Sbjct: 427  KDLKVSVQGQELKLPVYLLPIVGADLILGATWLATLGPHVADYQALTLKFFQQGHFITLQ 486

Query: 3129 GDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAPEDNWKDMPVTVEPEMATLLYTY 2950
            GD       AQLH  +RL   +AISE FT+Q+ +   P+DNW  +   ++PE+A LL  Y
Sbjct: 487  GDKSTTPQQAQLHHMRRLHTTEAISEYFTIQRSDPDGPQDNWLTLAKDMDPELALLLNQY 546

Query: 2949 REVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHSQKEQIEKMVQEMLEEGXXXXX 2770
            + VF  P GLPP R   H I L+ GA PVKV+PYRYP SQKEQIE MV+EMLEEG     
Sbjct: 547  KAVFGKPIGLPPQRLQDHVIPLEPGAKPVKVRPYRYPQSQKEQIEIMVKEMLEEGIIQPS 606

Query: 2769 XXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAKFFSKFDLR 2590
                    +LVKKKDGTWR CTDYRALNAIT+KDSFPMPTVDELLDEL GA++FSK DLR
Sbjct: 607  TSPFSSPIVLVKKKDGTWRFCTDYRALNAITVKDSFPMPTVDELLDELFGAQYFSKLDLR 666

Query: 2589 SGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPATFQRLMNEIFQPFLRKCVLVF 2410
            SGYHQILV P+DR KTAFRTHQGHYEWLVMPFGLTNAPA+FQ LMN+IFQPFLRK VLVF
Sbjct: 667  SGYHQILVDPQDRHKTAFRTHQGHYEWLVMPFGLTNAPASFQCLMNQIFQPFLRKFVLVF 726

Query: 2409 FDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSFGLTEVEYLGHTVSGSGVSMDR 2230
            FDDILVYSPS+  HL+ +E VLQIL  H L+ KLSKC+FG+ +V+YLGHTV GSGV+MDR
Sbjct: 727  FDDILVYSPSFAAHLKHLEIVLQILQDHTLFVKLSKCAFGIQQVDYLGHTVLGSGVAMDR 786

Query: 2229 NKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIAGPLTNLLKKDAFQWNENTQLA 2050
            +K+  VLDWP P N+KQLRGFLGLTGYYR+FIK+YA IA PLT LLKKDAF+WN   ++A
Sbjct: 787  SKIQTVLDWPTPENIKQLRGFLGLTGYYRKFIKSYAQIATPLTELLKKDAFKWNHAAEMA 846

Query: 2049 FEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLSQGGHPIAFFSKKMAPRMQLQS 1870
            F  LKKAITSAPVL LP F+ PF LETDASG+G+GAVLSQ GHPIAFFS+K+ PRMQ QS
Sbjct: 847  FSTLKKAITSAPVLALPQFTIPFTLETDASGSGIGAVLSQNGHPIAFFSRKLGPRMQKQS 906

Query: 1869 AYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXXXXXQTPEQQAWLHKFIGYDFQ 1690
            AYTREF+AIT A+AKFRHYLLGHKFI++T             QTPEQQAWLHKF+GYDF 
Sbjct: 907  AYTREFFAITEAIAKFRHYLLGHKFIIKTDQKSLKSLMDQSLQTPEQQAWLHKFLGYDFT 966

Query: 1689 IEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVATNEHLKMIVQQCEQNTVADRN 1510
            +EYKPGK+N AADALSR+M ++WS P ++FL+E K+     E ++ I  +  +N   + +
Sbjct: 967  VEYKPGKENLAADALSRVMLLAWSQPTSLFLQEFKQACNQEEEIQQIKLKWNENRGYNPH 1026

Query: 1509 YAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHAGVTRTLARIGAQFYWPKMRQD 1330
              +K  L++WK +L++P  S +  QIL+E+H+S IGGHAG+ RT+ARI AQFYW  M+ D
Sbjct: 1027 VTIKDDLVFWKGRLMVPQVSHIRDQILQEFHNSAIGGHAGIARTMARITAQFYWKNMKND 1086

Query: 1329 VKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVTMDFITGLPPSHGYTVIMVVVD 1150
            +  +V  C+VCQQAK  T   AGLL+PLPIP+QVW+DV MDFITGLP S+G+TVIMVV+D
Sbjct: 1087 ITHFVQQCVVCQQAKHETRNPAGLLQPLPIPDQVWEDVAMDFITGLPNSYGFTVIMVVID 1146

Query: 1149 RLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSIISDRDRVFTSKFWQNLFELQGT 970
            RL+K++HF P+KTDYSSK VAE FM ++V+LHG+PKSI+SDRD+VF SKFW+ LF+LQGT
Sbjct: 1147 RLSKYSHFSPLKTDYSSKIVAEVFMRNIVKLHGVPKSIVSDRDKVFMSKFWKELFQLQGT 1206

Query: 969  TLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWYKALCWAELWYNTSHHTSAGMS 790
            TLAM+SAYHPQ+DGQSEA+NKCLEMYLRC TF NPKSW+KAL  AELWYNT+ HTS GM+
Sbjct: 1207 TLAMTSAYHPQSDGQSEALNKCLEMYLRCLTFQNPKSWFKALDLAELWYNTAFHTSLGMT 1266

Query: 789  PFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVITELKRNLARAQQIMKNNADKKRR 610
            PFK LYGR+PP + R  +++S     QQQL DRDA++T+ K NL RAQQ MK  ADK+R 
Sbjct: 1267 PFKLLYGRDPPTIIRQESSTSGATMAQQQLQDRDAILTQAKLNLERAQQYMKTQADKRRH 1326

Query: 609  DVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPFTILAKIGKVAYKLQLPDTAKIH 430
            ++  EVGD VLVKLQPYRQ SVALRKNQKLGMRYFGPFT++AKIG VAYKLQLP  AKIH
Sbjct: 1327 ELQLEVGDNVLVKLQPYRQQSVALRKNQKLGMRYFGPFTVMAKIGTVAYKLQLPPEAKIH 1386

Query: 429  SVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGILKTRTILRNEQQVPQVLVKWQH 250
             VFH+SQLKLFKG  ++PY PLP  T E GP+L+P  IL+ R +++ ++ + Q+LV+W++
Sbjct: 1387 PVFHISQLKLFKGNCSQPYFPLPALTNELGPVLQPGDILQARQLVQGKKTIQQILVRWEN 1446

Query: 249  LQVAEATWEDKNEMAIQYPNLNLEDKIALEGEGDV 145
            L   EATWE+  +   Q+PN NLEDK+ + G  DV
Sbjct: 1447 LTAEEATWEELEDFRQQFPNYNLEDKVEVIGGSDV 1481


>dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subterraneum]
          Length = 1556

 Score = 1716 bits (4443), Expect = 0.0
 Identities = 841/1442 (58%), Positives = 1046/1442 (72%), Gaps = 18/1442 (1%)
 Frame = -1

Query: 4395 PFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIASVHLDQEVVPWFQMVN 4216
            PF  R+++L+FPRFNG +VL WIFKA+QFF YY+TPD ERL IA+VHLD  VVPWFQM+ 
Sbjct: 75   PFHTRNVRLEFPRFNGTDVLAWIFKADQFFDYYHTPDPERLTIAAVHLDHTVVPWFQMIQ 134

Query: 4215 RSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYYLEFTALSNRVYGISND 4036
            R  PF +W +FT ALE+++GPS+++ PR +LFKL Q+ +V+EYYL+FT L+NRV G+  D
Sbjct: 135  RETPFSSWQEFTHALEMEYGPSVFERPRTTLFKLAQTGTVHEYYLQFTNLANRVTGLDPD 194

Query: 4035 ALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXANTNVQNQKYNAGSTAVQ 3856
            AL+DCF+SGL+ +L+R+V+   PT++                    +  +K+       Q
Sbjct: 195  ALLDCFISGLQRDLQREVISQHPTTLGQAVSV------------ARLFEEKFQPTKAVTQ 242

Query: 3855 ARAPFNPTRNSQTQATEKAXXXXXXXXXXXXPMSQLQKNP---------AIKRIS-AEMQ 3706
                  PT NSQ QA                  + L   P         ++KRIS AEMQ
Sbjct: 243  PLLSKGPTYNSQYQARSTNSQGYTSNLTQRPNSTPLLPTPINRPPMANRSVKRISPAEMQ 302

Query: 3705 LRREKGLCYFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQ------ANSDDDREIQK 3544
            LRREKGLCY+CD+ FSF HRCPNKHL LL+L                    S      Q 
Sbjct: 303  LRREKGLCYYCDETFSFRHRCPNKHLYLLQLEDPIPTSPDSEPNIAASEPQSPTSDTPQP 362

Query: 3543 PVEHHLSLNALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPIEPVT 3364
             ++ HLSLNALNG+  +G +RF G I    + IL+DGGSSD+F QPR+AH L LP+EP  
Sbjct: 363  ELDLHLSLNALNGSRKLGTLRFTGSIAGTTIQILVDGGSSDNFFQPRLAHFLQLPVEPAP 422

Query: 3363 RCNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGPHVAD 3184
              NVLVGNGQ M AEG I  L+V +QG  I +P +LLP +G+D+ILG+ WLA+LGPH+A+
Sbjct: 423  GFNVLVGNGQSMMAEGKISKLSVTIQGQTIVLPVFLLPFSGADLILGSSWLATLGPHIAN 482

Query: 3183 YATSKLRFYLEGKFVTLQG--DTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAPED 3010
            YA   LRF ++GKFVTL G  D+ P  A AQLH  +R+Q   AISE++ +Q     +   
Sbjct: 483  YADLSLRFVVDGKFVTLNGMPDSLPTPAPAQLHHIRRMQRTHAISEVYMMQLFHVSSDAP 542

Query: 3009 NWKDMPVTVEPEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHSQ 2830
            + + +  T+ P++  LL+ Y ++FQ P  LPPPR   H I L + +  +KV+PYRYPHSQ
Sbjct: 543  SVEQITSTLSPDLQELLHRYSDIFQTPTSLPPPRAQDHSIPLMDESTVIKVRPYRYPHSQ 602

Query: 2829 KEQIEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMPT 2650
            KEQIEKMV+EML++G             ILVKKKDGTWRCCTDYRALN +T+KDSFP+P+
Sbjct: 603  KEQIEKMVKEMLQQGIIQPSTSPFSSPIILVKKKDGTWRCCTDYRALNTVTVKDSFPLPS 662

Query: 2649 VDELLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPAT 2470
            VDELLDEL+GA++FSK DLRSGYHQIL+ P DR KTAFRTHQGHYEWLVMPFGL+NAPA+
Sbjct: 663  VDELLDELYGARYFSKLDLRSGYHQILMNPNDRHKTAFRTHQGHYEWLVMPFGLSNAPAS 722

Query: 2469 FQRLMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSFG 2290
            FQ LMNE+FQ  LRK VLVFFDDILVYSP W  HL  +E VL  L Q VLY KLSKCSFG
Sbjct: 723  FQCLMNEVFQFALRKFVLVFFDDILVYSPDWSAHLDHLERVLLTLKQQVLYVKLSKCSFG 782

Query: 2289 LTEVEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIAG 2110
            + +V+YLGHTVSG GV+MD+ KV  + DWP+P N+KQLRGFLGLTGYYRRFIKAY+ IA 
Sbjct: 783  MLQVDYLGHTVSGMGVAMDKEKVRVIADWPLPINVKQLRGFLGLTGYYRRFIKAYSQIAA 842

Query: 2109 PLTNLLKKDAFQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLSQ 1930
            PLTNLLKK+ F W++    AF  LK  I++APVL LPDFS+PF+LETDAS TG+GA+LSQ
Sbjct: 843  PLTNLLKKEGFHWDDTATTAFYNLKLVISTAPVLALPDFSKPFILETDASNTGIGAILSQ 902

Query: 1929 GGHPIAFFSKKMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXXX 1750
             GHPIAFFSKK+ P  Q QSAY REF AIT ALAKFRHYLLGHKFI+RT           
Sbjct: 903  EGHPIAFFSKKLGPTAQKQSAYVREFRAITEALAKFRHYLLGHKFIIRTDQKSLKALLEQ 962

Query: 1749 XXQTPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVAT 1570
              QTPEQQAWLHKFIG+DF IEYKPGK+N A DALSR+  ++WS P   FL+EL+ E+  
Sbjct: 963  TLQTPEQQAWLHKFIGFDFTIEYKPGKENLAVDALSRINLLAWSEPHYSFLDELRLEIQQ 1022

Query: 1569 NEHLKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHAG 1390
            + HLK I+QQC  N+ AD NY VK  LL+W+Q+LVIP  S LIQ+IL E+H SPIGGH+G
Sbjct: 1023 DTHLKEIIQQCLNNSCADANYTVKDNLLFWQQRLVIPENSTLIQKILLEFHSSPIGGHSG 1082

Query: 1389 VTRTLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVTM 1210
            +TRT+ARI +QFYW  MRQ +  ++  C++CQQAK+ TT  AGLL PLPIP  VW D+ M
Sbjct: 1083 ITRTMARIASQFYWTHMRQHIVAFIKHCVICQQAKTTTTTPAGLLAPLPIPTLVWADIAM 1142

Query: 1209 DFITGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSIIS 1030
            DFITGLPPS+G+TVI+VV+DRLTK+AHF P+K+D+ SK VAE FM ++V+LHGMP SI+S
Sbjct: 1143 DFITGLPPSNGFTVILVVIDRLTKYAHFFPLKSDFDSKKVAEIFMQNIVKLHGMPSSIVS 1202

Query: 1029 DRDRVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWYK 850
            DRD+VFTS FW++LF+L GTTLAM+SAYHPQ+DGQSE +NKC+EMYLRC TF+NP  W K
Sbjct: 1203 DRDKVFTSAFWRHLFKLHGTTLAMTSAYHPQSDGQSEVLNKCVEMYLRCMTFDNPTKWSK 1262

Query: 849  ALCWAELWYNTSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVITEL 670
            AL W E WYNTS+HTSA M+PFKALYG +PP L R    + D  +LQ QL +R+ ++++L
Sbjct: 1263 ALPWTEFWYNTSYHTSAAMTPFKALYGSDPPQLVRTKGTTDDHPDLQTQLAEREDLLSQL 1322

Query: 669  KRNLARAQQIMKNNADKKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPFTI 490
            + NL +AQQ MK  ADKKR  V F+V DQVLVKLQPYRQ+SVALRK+QKLG+RYFGPF I
Sbjct: 1323 QVNLHKAQQAMKFQADKKRHHVEFKVDDQVLVKLQPYRQSSVALRKHQKLGLRYFGPFPI 1382

Query: 489  LAKIGKVAYKLQLPDTAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGILK 310
            +AK+G VAY+L LP T KIH VFHVSQLKLF G    PY+PLPLTT E GPIL+PE +L 
Sbjct: 1383 VAKVGVVAYRLGLPSTTKIHPVFHVSQLKLFHGPHIPPYMPLPLTTSELGPILQPEALLD 1442

Query: 309  TRTILRNEQQVPQVLVKWQHLQVAEATWEDKNEMAIQYPNLNLEDKIALEGEGDVMNNKS 130
            +R I+R    + QVL+ W+ L+ A+ATWED  E  + +PN NLEDK+ L G G ++ +  
Sbjct: 1443 SRLIMRGNTPISQVLISWEGLETADATWEDLVEFKLAHPNFNLEDKVTLNG-GSIVRDPI 1501

Query: 129  VN 124
            +N
Sbjct: 1502 IN 1503


>dbj|GAU12540.1| hypothetical protein TSUD_182540 [Trifolium subterraneum]
          Length = 1451

 Score = 1706 bits (4419), Expect = 0.0
 Identities = 851/1501 (56%), Positives = 1077/1501 (71%), Gaps = 4/1501 (0%)
 Frame = -1

Query: 4623 FEELSSMQKASEARFNQLADAFEKLMQQTPTVTHGGTNSGXXXXXXXXXXXXXXXXXXXX 4444
            FE L   +  + A+FN++  A + L+ QTP+  H G                        
Sbjct: 15   FERLERSKAENGAKFNKIFAALDILIDQTPSKQHHGAGL--------------------- 53

Query: 4443 XXXXXXXXTIPTMSSTPFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIA 4264
                       T +  PFQVR++KL+FPRF+GKNV +WIF+AEQFF YY+TPD +RL IA
Sbjct: 54   -----------THNRPPFQVRNVKLEFPRFDGKNVHEWIFRAEQFFEYYDTPDLDRLTIA 102

Query: 4263 SVHLDQEVVPWFQMVNRSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYY 4084
            SVHLD++VVPW+QM+ R+ PF +W++ TRALEL FGPS+YDCPRA+LFKL Q+ SV +YY
Sbjct: 103  SVHLDKDVVPWYQMMQRTHPFMSWIELTRALELGFGPSIYDCPRATLFKLNQTGSVADYY 162

Query: 4083 LEFTALSNRVYGISNDALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXAN 3904
            L+FT+L+NRVYG+SNDAL+DCFVSGL +E+RRDV++HTP S+                  
Sbjct: 163  LQFTSLANRVYGLSNDALVDCFVSGLNNEIRRDVLIHTPPSLVKAVSLAKVYEEKYA--- 219

Query: 3903 TNVQNQKYNAGSTAVQARAPFNPTRNSQTQATEKAXXXXXXXXXXXXPMSQLQKNPAIKR 3724
            +N++ QK+N  +T      PF  T   +T     A             MSQ QKNP IKR
Sbjct: 220  SNLKTQKFN--NTNYATNKPF--TNKPETITRNSAPILNTPPTRP---MSQFQKNPNIKR 272

Query: 3723 IS-AEMQLRREKGLCYFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDD---DR 3556
            IS AEMQ+RR+KGLCY+CDDKFS++H+CP++ LMLL+              +S D   + 
Sbjct: 273  ISPAEMQVRRDKGLCYWCDDKFSYTHKCPSRQLMLLQYDDNEEEHDDEKANDSPDIATES 332

Query: 3555 EIQKPVEHHLSLNALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPI 3376
                 +EHHLS NA+ G + MG++RF G I  + V +L+DGGSSD+F+QPRIA  L LPI
Sbjct: 333  SDNTQLEHHLSFNAMKGNSSMGILRFTGTIEHIQVQVLIDGGSSDNFLQPRIAKFLKLPI 392

Query: 3375 EPVTRCNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGP 3196
            EP     VLVGNGQ M AE                       VAG+DV+LGA WLA+LGP
Sbjct: 393  EPGPVFKVLVGNGQIMTAE-----------------------VAGADVVLGASWLATLGP 429

Query: 3195 HVADYATSKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAP 3016
            HVADYA+  L+F++ GKFVTL+G+T  K   AQ H FKRL   DAI+E FT+Q +++   
Sbjct: 430  HVADYASLTLKFFINGKFVTLKGETTSKPTAAQFHHFKRLHFTDAIAECFTIQWLKSHTD 489

Query: 3015 EDNWKDMPVTVEPEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPH 2836
            ED ++++P  +EPE+A LL+TY+E+F+ P  LPP R  +H I L EG  PVKVKPYRYPH
Sbjct: 490  EDIFRELPTNIEPEIAMLLHTYKELFKTPNTLPPHRLHNHNIPLIEGYNPVKVKPYRYPH 549

Query: 2835 SQKEQIEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPM 2656
            SQK QIE MVQ+ML++G             +LVKKKDGTWR CTDYRALNAIT+KDSFP+
Sbjct: 550  SQKNQIELMVQDMLQQGIIQPNTSPFSSPIVLVKKKDGTWRFCTDYRALNAITVKDSFPI 609

Query: 2655 PTVDELLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAP 2476
            PTVDELLDEL GAKFFSK DLRSGY+QIL++PEDR KTAF+THQGHYEWLVMPFGLTNAP
Sbjct: 610  PTVDELLDELFGAKFFSKLDLRSGYYQILLQPEDRYKTAFKTHQGHYEWLVMPFGLTNAP 669

Query: 2475 ATFQRLMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCS 2296
            ATFQ LMN IFQ  LRK VLVFFDDILVYS +W  HL  ++ VL+ L  + L+ KLSKCS
Sbjct: 670  ATFQSLMNHIFQHALRKYVLVFFDDILVYSSTWQDHLNHLDTVLKTLQDNDLFVKLSKCS 729

Query: 2295 FGLTEVEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASI 2116
            FG+ E+EYLGH V+G GVSMD++KV A+L+WP P+N+KQLRGFLGLTGYYRRFIK YA +
Sbjct: 730  FGVVEIEYLGHLVTGQGVSMDKDKVRAILEWPTPNNIKQLRGFLGLTGYYRRFIKHYARL 789

Query: 2115 AGPLTNLLKKDAFQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVL 1936
            A PLT+LLKK+ + WN  T++ F++LK A+TSAPVL LP+F +PF+ ETDASG       
Sbjct: 790  AAPLTDLLKKENYYWNAQTEMGFQELKVAMTSAPVLALPNFQKPFIPETDASGY------ 843

Query: 1935 SQGGHPIAFFSKKMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXX 1756
             QG               + +SAY RE  AI+ A+AKFRHY LGH+FI+RT         
Sbjct: 844  -QG--------------TRKKSAYFREMLAISEAIAKFRHYFLGHRFIIRTDQKSLRSLM 888

Query: 1755 XXXXQTPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEV 1576
                QTP+QQ WLHKF+GYDF IEYKPGK+N AADALSR+MT++WS P +  + ++K E+
Sbjct: 889  DQSLQTPDQQQWLHKFLGYDFVIEYKPGKENLAADALSRVMTLAWSEPISQIIIQIKDEI 948

Query: 1575 ATNEHLKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGH 1396
              + +   I+ +C+    +   Y ++ G+LYWK ++VIP +S LIQQ+L E+H SPIGGH
Sbjct: 949  KADTYWSDIMDKCKSQGNSYLQYTLREGVLYWKNRVVIPKKSALIQQVLHEFHSSPIGGH 1008

Query: 1395 AGVTRTLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDV 1216
            AG TRTLARI +QFYW  M++DV EY+  C +CQQAK   T  AGLL+PLPIP+QVW+D+
Sbjct: 1009 AGFTRTLARIKSQFYWIAMKKDVLEYIQNCAICQQAKHTNTLPAGLLQPLPIPSQVWEDI 1068

Query: 1215 TMDFITGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSI 1036
             MDFITGLP S+GYT I+VV+DRLTK+AHF+PMKTDYSSKSVAE FM+++V+LHGMPKSI
Sbjct: 1069 AMDFITGLPLSYGYTTILVVIDRLTKYAHFLPMKTDYSSKSVAEVFMNNIVKLHGMPKSI 1128

Query: 1035 ISDRDRVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSW 856
            +SDRD+VFTS FWQ+LF+LQGT+LAMSSAYHPQ+DGQ+E +NK LE++LRCFTFNNPKSW
Sbjct: 1129 VSDRDKVFTSSFWQHLFKLQGTSLAMSSAYHPQSDGQTEVLNKGLELFLRCFTFNNPKSW 1188

Query: 855  YKALCWAELWYNTSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVIT 676
            YKAL W+E WYNT+ HTS GM+PFKALYGREPP LTRY    +DP  LQ++L++RD ++ 
Sbjct: 1189 YKALAWSEFWYNTALHTSIGMTPFKALYGREPPTLTRYEVQDNDPPALQEELMERDRILQ 1248

Query: 675  ELKRNLARAQQIMKNNADKKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPF 496
            +LK NL RAQQ MK  ADK R +  F +GD VLVKLQPYRQ SVALRKNQKLGMRYFGPF
Sbjct: 1249 QLKSNLERAQQYMKKQADKHRVEFKFHLGDMVLVKLQPYRQQSVALRKNQKLGMRYFGPF 1308

Query: 495  TILAKIGKVAYKLQLPDTAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGI 316
             I+A +GKVAYKL+LPD AKIH VFHVSQLK FKG   + Y+PLPLT  + GP+++P  +
Sbjct: 1309 EIIACVGKVAYKLKLPDHAKIHLVFHVSQLKPFKGVPQQQYMPLPLTMFDNGPMIQPVEV 1368

Query: 315  LKTRTILRNEQQVPQVLVKWQHLQVAEATWEDKNEMAIQYPNLNLEDKIALEGEGDVMNN 136
            L+ RTI++  Q++ Q+LV+W    +AEATWE+ +++   +P  NLEDK+  +G+G VM  
Sbjct: 1369 LQARTIMQGTQKIHQILVQWDQYDIAEATWENVDDLQKNFPLYNLEDKVIFKGDGIVMRP 1428

Query: 135  K 133
            K
Sbjct: 1429 K 1429


>gb|KYP39589.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
          Length = 1510

 Score = 1659 bits (4296), Expect = 0.0
 Identities = 806/1418 (56%), Positives = 1034/1418 (72%), Gaps = 1/1418 (0%)
 Frame = -1

Query: 4395 PFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIASVHLDQEVVPWFQMVN 4216
            P QVR++KLDFPRF+G +VL WIF+AEQFF YYNTPD +R++IA+VH ++ VVPW+QM+ 
Sbjct: 55   PLQVRNVKLDFPRFDGSDVLQWIFRAEQFFEYYNTPDEQRIVIAAVHFEKNVVPWYQMMQ 114

Query: 4215 RSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYYLEFTALSNRVYGISND 4036
            R+ P  +W   TR+LEL+FGPS +D PR++LFKL Q+ SVN+YY+EFT L+NR+YG+S +
Sbjct: 115  RTSPIISWNTLTRSLELEFGPSPFDSPRSTLFKLVQTGSVNDYYIEFTNLANRIYGVSAE 174

Query: 4035 ALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXANTNVQNQKYNAGSTAVQ 3856
            AL+DCF+SGLK +++R+++   P S+                    +  +KY+  S   Q
Sbjct: 175  ALLDCFISGLKPDIKREIIAQAPNSLLKAISL------------ARLFEEKYSFRSR--Q 220

Query: 3855 ARAPFNPTRNSQTQATEKAXXXXXXXXXXXXPMSQLQKNPAIKRIS-AEMQLRREKGLCY 3679
            +    N + ++  Q+                P +   +N A++++S AEMQ RRE+GLC+
Sbjct: 221  SFVTRNTSHSAGNQSYTNPAQQPLLNTPNIKPAAFPNRNTAVRKMSPAEMQSRRERGLCF 280

Query: 3678 FCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDDDREIQKPVEHHLSLNALNGAT 3499
             CD++FS +HRCPNK  +LL++              + D   ++  +EHHLS NAL G  
Sbjct: 281  TCDERFSANHRCPNKQYLLLQVEDEEELEE----TTNVDSTALEDELEHHLSFNALKGVA 336

Query: 3498 GMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPIEPVTRCNVLVGNGQKMQAE 3319
             +G +RF G I   +V ILLD GSSD+F+QP++AH L LPIEP     V+VGNG  +  E
Sbjct: 337  TVGTMRFTGSIAGKEVHILLDSGSSDNFLQPKLAHYLKLPIEPAAGLQVMVGNGSSLSTE 396

Query: 3318 GVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYATSKLRFYLEGKFV 3139
            G I NL V+VQG  + +P YLL V+G+D++LGA WLA+LGPH+ADY +  ++FY + K V
Sbjct: 397  GKILNLQVQVQGQVLQLPVYLLSVSGADLVLGAAWLATLGPHIADYGSLTIKFYKDKKLV 456

Query: 3138 TLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAPEDNWKDMPVTVEPEMATLL 2959
            TLQG+     A++Q H  KRL H   I+E++TLQ + +    D WKD+P  V+PE+A LL
Sbjct: 457  TLQGEKSRPAAMSQFHHLKRLNHTQGIAEVYTLQLLSSFVETDQWKDIPDNVDPEIALLL 516

Query: 2958 YTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHSQKEQIEKMVQEMLEEGXX 2779
            + YR++F  P GLPPPR  +H I L +G+ PVKV+PY+YPHSQK+QIE M++EMLE+G  
Sbjct: 517  HYYRQIFAKPTGLPPPRSQNHRIPLLQGSGPVKVRPYKYPHSQKQQIELMIKEMLEDGII 576

Query: 2778 XXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAKFFSKF 2599
                       ILVKKKDG+WR CTDYRALNAIT+KDSFP+PTV+ELLDEL GAK+FSK 
Sbjct: 577  APSSSPFSSPIILVKKKDGSWRFCTDYRALNAITVKDSFPIPTVEELLDELFGAKYFSKL 636

Query: 2598 DLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPATFQRLMNEIFQPFLRKCV 2419
            DLR+GYHQILV+ EDR KTAFRTHQGHYEWLVMPFGLTNAPATFQ LMN+IFQ  LRK V
Sbjct: 637  DLRAGYHQILVQEEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQNLMNDIFQGLLRKSV 696

Query: 2418 LVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSFGLTEVEYLGHTVSGSGVS 2239
            LVFFDDILVYS SW  HLQ ++ VL IL++H LYAK+SKCSFGL +VEYLGH VSG GVS
Sbjct: 697  LVFFDDILVYSSSWFLHLQHLQQVLDILAKHELYAKMSKCSFGLEQVEYLGHVVSGDGVS 756

Query: 2238 MDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIAGPLTNLLKKDAFQWNENT 2059
            M+ +KV AV+DWPVP  +KQLRGFLGLTGYYRRFI+ YASIA PLT+LLKKD F+W+   
Sbjct: 757  METSKVQAVIDWPVPKTIKQLRGFLGLTGYYRRFIQGYASIANPLTDLLKKDNFKWSNEA 816

Query: 2058 QLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLSQGGHPIAFFSKKMAPRMQ 1879
              AF  LK+AIT+APVL LPDFSQPFVLETDASG+G+GAVLSQ  HPIAFFSKK++ RM 
Sbjct: 817  DAAFIALKQAITTAPVLSLPDFSQPFVLETDASGSGIGAVLSQNKHPIAFFSKKLSNRMT 876

Query: 1878 LQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXXXXXQTPEQQAWLHKFIGY 1699
             QSAYTREFYAIT A+AKFRHYLLGH+FI+RT             QTPEQQAWLHKF+GY
Sbjct: 877  KQSAYTREFYAITEAIAKFRHYLLGHRFIIRTDQKSLKSLLDQTLQTPEQQAWLHKFLGY 936

Query: 1698 DFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVATNEHLKMIVQQCEQNTVA 1519
            DF IEYKPG +N AADALSR   M+ +   +  + ++K  + ++  L+ I+    Q    
Sbjct: 937  DFSIEYKPGTENLAADALSRSFFMASAVTASDLVHQIKAALGSDTALQPILTAHSQGKAL 996

Query: 1518 DRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHAGVTRTLARIGAQFYWPKM 1339
               Y+   GLL+WK ++V+P    +  QIL+E+H SP+GGH+G+ RT AR+ AQF+WP M
Sbjct: 997  SAPYSFLDGLLFWKGRIVVPNVPAIQNQILQEFHSSPLGGHSGIARTFARVAAQFFWPGM 1056

Query: 1338 RQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVTMDFITGLPPSHGYTVIMV 1159
             +D+K +V  C VCQQAK+AT   AGLL+PLPIP Q+W+D++MDFI GLPP+ GYTVI V
Sbjct: 1057 NKDIKNFVQQCCVCQQAKTATVLPAGLLQPLPIPTQIWEDISMDFIVGLPPAEGYTVIFV 1116

Query: 1158 VVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSIISDRDRVFTSKFWQNLFEL 979
            +VDRL+K+AHF P+K+D++SK VA+ F+H+VV+LHG P SI+SDRD+VFTS FWQ+L +L
Sbjct: 1117 IVDRLSKYAHFAPLKSDFNSKRVADVFLHTVVKLHGFPNSIVSDRDKVFTSTFWQHLLKL 1176

Query: 978  QGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWYKALCWAELWYNTSHHTSA 799
             GTTL +S+AYHPQ+DGQ+EA+NKCLEMYLRCFT   PK W K L WAE WYNTS H SA
Sbjct: 1177 SGTTLKLSTAYHPQSDGQTEALNKCLEMYLRCFTHEKPKDWIKFLPWAEFWYNTSFHHSA 1236

Query: 798  GMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVITELKRNLARAQQIMKNNADK 619
             MSPFK +YGR+PP L +Y+ +++DP  +Q+ LL RD V+ +LK NL  AQQ MK  AD+
Sbjct: 1237 QMSPFKVVYGRDPPTLVKYSHSATDPPSIQEMLLQRDRVLAQLKVNLMLAQQRMKKYADQ 1296

Query: 618  KRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPFTILAKIGKVAYKLQLPDTA 439
            KR    F  G+ VLVKLQPYRQ S+ALRKNQKLG+RYFGPF I  +IG VAYKL LPD A
Sbjct: 1297 KRLHKEFVEGEMVLVKLQPYRQHSLALRKNQKLGLRYFGPFPIQKRIGSVAYKLLLPDYA 1356

Query: 438  KIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGILKTRTILRNEQQVPQVLVK 259
            KIH VFH+SQLK F+G     Y+PLPLTT  EGP+++P  +L  R I++  + V QVLV+
Sbjct: 1357 KIHPVFHISQLKQFRGVTDTVYVPLPLTTAVEGPVVQPIQVLSVRDIIQAGKLVRQVLVQ 1416

Query: 258  WQHLQVAEATWEDKNEMAIQYPNLNLEDKIALEGEGDV 145
            W+   V  ATWED +++   YPN+NLEDK+  +G   V
Sbjct: 1417 WEGFGVDAATWEDLDKLEQSYPNINLEDKVIAKGGSSV 1454


>gb|PNX92398.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1571

 Score = 1633 bits (4229), Expect = 0.0
 Identities = 813/1430 (56%), Positives = 1018/1430 (71%), Gaps = 5/1430 (0%)
 Frame = -1

Query: 4395 PFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIASVHLDQEVVPWFQMVN 4216
            PFQVR++KLDFPRF+G  VL+WIFKAEQFF YY+TPD  RL IA+VHLD++VVPW+QM+ 
Sbjct: 104  PFQVRNVKLDFPRFDGTEVLNWIFKAEQFFDYYSTPDNHRLTIAAVHLDKDVVPWYQMIT 163

Query: 4215 RSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYYLEFTALSNRVYGISND 4036
            R+ PF++W  FT ALE+++GPS ++ PR +LFKL Q+ +V+EYY  FT L+NR +G+S D
Sbjct: 164  RNNPFRSWTAFTSALEMEYGPSPFESPRPTLFKLTQTTTVSEYYSTFTTLANRTHGLSPD 223

Query: 4035 ALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXANTNVQNQKYNAG--STA 3862
            A++DCF+SGL+ E+RRDV++  PTSI+               +        YN    + +
Sbjct: 224  AILDCFISGLQPEIRRDVIVQKPTSISQALSLAKLFAEKYTKSTPPTTKPYYNPSPQTNS 283

Query: 3861 VQARAPFNPTRNSQTQATEKAXXXXXXXXXXXXPMSQLQKNPAIKRISAEMQLRREKGLC 3682
               +  +NP+ NS T+ T               P  + +  P     +AE+Q RR+ G C
Sbjct: 284  PNPKTHYNPSPNSLTRPTNAILPTPANRPQTQTPNPRAR--PIRNITAAEIQRRRDTGQC 341

Query: 3681 YFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDDDREIQKPVEHHLSLNALNGA 3502
            ++CDD+FS SHRCPNKH +LL++             + D   E +   EHHLS NAL G 
Sbjct: 342  FYCDDRFSSSHRCPNKHYLLLQVDDSDTPEQETDPPDIDPLVE-ELEAEHHLSFNALKGV 400

Query: 3501 TGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPIEPVTRCNVLVGNGQKMQA 3322
               G +RF+G I  V V +LLD GSSD+F+QPRIA CL LPI+   +  VLVGNG  + A
Sbjct: 401  YSAGTLRFQGQIQGVQVQVLLDSGSSDNFLQPRIAQCLKLPIQEAPQFQVLVGNGSTLTA 460

Query: 3321 EGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYATSKLRFYLEGKF 3142
             G+I +L V +QG  + +P YLLP+ G+D++LGAPWL +LGPH+ADY    ++FYL  KF
Sbjct: 461  SGLIPDLPVTIQGHTLQLPVYLLPITGADLVLGAPWLKTLGPHIADYDALSIKFYLNNKF 520

Query: 3141 VTLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAPEDNWKDMPVTVEPEMATL 2962
            +TL+GD       A+ H  +RL +  +I   +TLQ      P         T+  E+A L
Sbjct: 521  ITLRGDRFMDPGQAEFHHIRRLNNTHSIDLSYTLQFNSIATPSS--AVALETLPAELAAL 578

Query: 2961 LYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHSQKEQIEKMVQEMLEEGX 2782
            L+ Y +VF+ P  LPPPR   H I L +G+ PVKVKPYRYPHSQK +IEKMV +ML++G 
Sbjct: 579  LHQYWQVFEEPTSLPPPRAQDHYIPLIDGSNPVKVKPYRYPHSQKAEIEKMVADMLKQGI 638

Query: 2781 XXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAKFFSK 2602
                        +LVKKKDG+WR CTDYRALNAIT+KDSFP+PTVDELLDEL GA +FSK
Sbjct: 639  IQPSTSPFSSPVLLVKKKDGSWRFCTDYRALNAITVKDSFPIPTVDELLDELFGASYFSK 698

Query: 2601 FDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPATFQRLMNEIFQPFLRKC 2422
             DLRSGYHQILV PEDR KTAFRTHQG YEWLVMPFGL+NAPA+FQ LMN +F+  LRK 
Sbjct: 699  LDLRSGYHQILVNPEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNSVFRDQLRKF 758

Query: 2421 VLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSFGLTEVEYLGHTVSGSGV 2242
            VLVFFDDILVYSPSW THL+ +E VL++L ++ L+AK SKC FGLT V+YLGHT+S  GV
Sbjct: 759  VLVFFDDILVYSPSWSTHLEHLEVVLRVLQENQLFAKFSKCCFGLTSVDYLGHTISNQGV 818

Query: 2241 SMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIAGPLTNLLKKDAFQWNEN 2062
             MD++K+ AV++W +PS+LKQLRGFLGL+GYYRRFI+ YA+IA PLT LLKKDAFQW   
Sbjct: 819  EMDKSKIQAVMEWKIPSSLKQLRGFLGLSGYYRRFIRNYAAIASPLTELLKKDAFQWTST 878

Query: 2061 TQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLSQGGHPIAFFSKKMAPRM 1882
               AF +LK+AIT APVL LPDF  PF LETDASG+GVGAVLSQ  HPIA+FSKK+ PRM
Sbjct: 879  ATEAFNKLKQAITQAPVLSLPDFRLPFTLETDASGSGVGAVLSQARHPIAYFSKKLCPRM 938

Query: 1881 QLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXXXXXQTPEQQAWLHKFIG 1702
            Q QSAY RE YAIT ALAKFRHYL+GHKF+++T             QTPEQQ WLHKF+G
Sbjct: 939  QKQSAYVRELYAITEALAKFRHYLIGHKFVIKTDQRSLKSLTDQSIQTPEQQHWLHKFLG 998

Query: 1701 YDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVATNEHLKMIVQQCEQNTV 1522
            YDF IEYKPG DN AAD+LSR    + S   +  +  +   V  +  L  I  QC   T 
Sbjct: 999  YDFTIEYKPGVDNIAADSLSRSFCFALSVQTSQLVAMIHTAVNDDPALAEIRNQCLLGTN 1058

Query: 1521 ADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHAGVTRTLARIGAQFYWPK 1342
               +Y VK  +L+WK +LVIP + +LIQ +L E+H S +GGHAG+TRT AR+ +QF+WP 
Sbjct: 1059 TAPHYQVKHDMLFWKNRLVIPQKPELIQLLLTEFHSSALGGHAGITRTKARVASQFFWPT 1118

Query: 1341 MRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVTMDFITGLPPSHGYTVIM 1162
            M +D+KE+V+ C++CQQAK +T   AGLL PLPIP Q+W+D++MDFI GLPPSH YTVI+
Sbjct: 1119 MAKDIKEFVSKCLICQQAKHSTAVPAGLLHPLPIPQQIWEDLSMDFIIGLPPSHTYTVIL 1178

Query: 1161 VVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSIISDRDRVFTSKFWQNLFE 982
            VVVDRL+K++HFIP+K DY+S  VAEAF++++V+LHG PK+I+SDRDRVFTS+FWQ+LF+
Sbjct: 1179 VVVDRLSKYSHFIPLKGDYTSSKVAEAFVNTIVKLHGFPKTIVSDRDRVFTSQFWQHLFK 1238

Query: 981  LQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWYKALCWAELWYNTSHHTS 802
            + GTTLAMS+AYHPQTDGQSEAVNKCLE+YLRCFT ++PK W K L WAE WYNTS HTS
Sbjct: 1239 ISGTTLAMSTAYHPQTDGQSEAVNKCLELYLRCFTSDSPKQWVKLLPWAEFWYNTSFHTS 1298

Query: 801  AGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVITELKRNLARAQQIMKNNAD 622
             GM+PFK +YGR+PP L RY  N+ DP  LQQ L +RD  I  LK NLARAQQIMK  AD
Sbjct: 1299 IGMTPFKVVYGRDPPSLIRYEVNNDDPPLLQQLLTERDDTIITLKANLARAQQIMKKFAD 1358

Query: 621  KKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPFTILAKIGKVAYKLQLPDT 442
             KRR V F+VGD VLVKLQPYRQ SV LR+NQKL MRYFGPF ++ +IG+VAYKL LP +
Sbjct: 1359 NKRRFVEFQVGDMVLVKLQPYRQHSVVLRRNQKLSMRYFGPFPVIERIGQVAYKLMLPPS 1418

Query: 441  AKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGILKTRTILRNEQQVPQVLV 262
            AKIH VFHVS LKL KG  +   +PLPLTT E GP+L P  I+  RTI++N Q V QV V
Sbjct: 1419 AKIHPVFHVSALKLCKGEHSTQLMPLPLTTTEHGPMLSPIAIIDRRTIIQNAQPVQQVQV 1478

Query: 261  KWQHLQVAEATWEDKNEMAIQYPNLNLEDKIALEGEGDVM---NNKSVNE 121
            +W+ L   E TWE  +E    YP  NLEDK+ +    +VM   NN S  E
Sbjct: 1479 QWEGLLPTETTWEKWDEFHSSYP--NLEDKVLVNEGSNVMIKDNNMSWQE 1526


>gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1240

 Score = 1600 bits (4144), Expect = 0.0
 Identities = 772/1218 (63%), Positives = 955/1218 (78%), Gaps = 12/1218 (0%)
 Frame = -1

Query: 3759 MSQLQKNPAIKRIS-AEMQLRREKGLCYFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXX 3583
            MSQ QKNP IKRIS AE QLRR+KGLCY+CD+KFSF+H+CPN+ LMLL+           
Sbjct: 1    MSQFQKNPNIKRISPAERQLRRDKGLCYWCDEKFSFTHKCPNRQLMLLQYDDNDE----- 55

Query: 3582 XQANSDDDREIQKP-----------VEHHLSLNALNGATGMGVIRFKGCIGPVDVSILLD 3436
               NS+ D  IQ P            EHHLS NA+ G + MG++RF G I  + V IL+D
Sbjct: 56   ---NSEIDSAIQSPDSTTDSPTTNIPEHHLSFNAMKGTSHMGILRFTGSIEQIKVQILID 112

Query: 3435 GGSSDSFIQPRIAHCLNLPIEPVTRCNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYL 3256
            GGSSD+F+QPRIA CL LP+EP +   VLVGNG+ M AEG+I  L + +QG  + +P YL
Sbjct: 113  GGSSDNFLQPRIAKCLKLPVEPASTFRVLVGNGEIMTAEGMINQLPLDIQGHKLEIPVYL 172

Query: 3255 LPVAGSDVILGAPWLASLGPHVADYATSKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKRL 3076
            LPVAG+DVILGA WLA+LGPHVADYA+  L+F+LEGKFVTL G+++ + + AQ H  KRL
Sbjct: 173  LPVAGADVILGASWLATLGPHVADYASLTLKFFLEGKFVTLVGESEVRPSAAQFHHLKRL 232

Query: 3075 QHMDAISELFTLQQIEAVAPEDNWKDMPVTVEPEMATLLYTYREVFQVPKGLPPPRELSH 2896
            Q+ DAI E FT+Q +++    D +KD P  +EPE+A LL+TY+++F  P  LPP R  +H
Sbjct: 233  QNTDAIDECFTVQWLKSTEITDIFKDFPTNIEPEIAILLHTYKDLFNTPSALPPSRSHNH 292

Query: 2895 EILLKEGAPPVKVKPYRYPHSQKEQIEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTW 2716
             I L EGA PVKVKPYRYPHSQKEQIE MVQ+ML++G             +LVKKKDGTW
Sbjct: 293  TIPLIEGANPVKVKPYRYPHSQKEQIETMVQDMLQQGIIQPSTSPFSSPIVLVKKKDGTW 352

Query: 2715 RCCTDYRALNAITIKDSFPMPTVDELLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTAF 2536
            R CTDYRALNA+TIKDSFP+PTVDELLDEL GA++FSK DLRSGYHQIL+ P+DR KTAF
Sbjct: 353  RFCTDYRALNALTIKDSFPIPTVDELLDELFGARYFSKLDLRSGYHQILLHPQDRYKTAF 412

Query: 2535 RTHQGHYEWLVMPFGLTNAPATFQRLMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQV 2356
            RTH GHYEWLVMPFGLTNAPATFQ LMN IFQ  LRK VLVFFDDIL+YS SW  HL  +
Sbjct: 413  RTHHGHYEWLVMPFGLTNAPATFQSLMNHIFQHVLRKYVLVFFDDILIYSSSWQDHLTHL 472

Query: 2355 ECVLQILSQHVLYAKLSKCSFGLTEVEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQL 2176
            + VL++L  + L+ KLSKCSFG++E+EYLGH V+G GVSMDR+KV AVL+W  P+N+KQL
Sbjct: 473  DAVLKVLQDNSLFVKLSKCSFGVSEIEYLGHMVTGQGVSMDRDKVQAVLNWSTPTNVKQL 532

Query: 2175 RGFLGLTGYYRRFIKAYASIAGPLTNLLKKDAFQWNENTQLAFEQLKKAITSAPVLILPD 1996
            RGFLGLTGYYRRFIK+YA IA PLT+LLKK++++WN+   +AF+QLK+A+TSAPVL LP+
Sbjct: 533  RGFLGLTGYYRRFIKSYAKIAAPLTDLLKKESYRWNDQADIAFQQLKEAVTSAPVLALPN 592

Query: 1995 FSQPFVLETDASGTGVGAVLSQGGHPIAFFSKKMAPRMQLQSAYTREFYAITAALAKFRH 1816
            F +PF+LETDASG G+GAVL Q  HPIA+FSKK+ PR Q +SAY RE  AI  A+AKFRH
Sbjct: 593  FHKPFILETDASGVGIGAVLHQDNHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRH 652

Query: 1815 YLLGHKFILRTXXXXXXXXXXXXXQTPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSRL 1636
            YLLGH+FI+RT             QTPEQQ WLHKF+GYDF IEYKPGK+N AADALSRL
Sbjct: 653  YLLGHRFIIRTDQKSLRSLMDQSLQTPEQQEWLHKFLGYDFVIEYKPGKENLAADALSRL 712

Query: 1635 MTMSWSGPENVFLEELKKEVATNEHLKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPL 1456
            MT++WS P+  F +++K+ +  +++L  I+Q+C Q  +A  NY V+ G+LYWK ++VIP 
Sbjct: 713  MTLAWSEPQYNFTQQVKEAIQQDDNLLEIIQKCLQG-LAPTNYTVREGILYWKHRMVIPP 771

Query: 1455 ESKLIQQILKEYHDSPIGGHAGVTRTLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSAT 1276
            ++ LIQQIL+E+H SPIGGHAG+TRTLARI +QFYW  M++D+ +YV  C+VCQQAK+  
Sbjct: 772  KAALIQQILEEFHTSPIGGHAGMTRTLARIKSQFYWSAMKKDIFDYVQNCLVCQQAKTTN 831

Query: 1275 TAYAGLLEPLPIPNQVWDDVTMDFITGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSK 1096
            T  AGLL+PLPIP+QVW+D+ MDFITGLP S GYT IMVVVDRLTK+AHFI MKTDY+SK
Sbjct: 832  TLPAGLLQPLPIPSQVWEDIAMDFITGLPLSFGYTTIMVVVDRLTKYAHFIAMKTDYTSK 891

Query: 1095 SVAEAFMHSVVRLHGMPKSIISDRDRVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEA 916
            SVAEAFMH+VV+LHGMPKSI+SDRD+VFTS FWQ+LF+LQGTTLAM+SAYHPQ+DGQ+E 
Sbjct: 892  SVAEAFMHNVVKLHGMPKSIVSDRDKVFTSTFWQHLFKLQGTTLAMTSAYHPQSDGQTEV 951

Query: 915  VNKCLEMYLRCFTFNNPKSWYKALCWAELWYNTSHHTSAGMSPFKALYGREPPMLTRYAA 736
            +NK LE+YLRCF+FNNPKSW+K L W+E WYNT+  TS GM+PFKALYGR+PP LTRY A
Sbjct: 952  LNKGLELYLRCFSFNNPKSWFKMLSWSEFWYNTAFQTSIGMTPFKALYGRDPPYLTRYVA 1011

Query: 735  NSSDPVELQQQLLDRDAVITELKRNLARAQQIMKNNADKKRRDVVFEVGDQVLVKLQPYR 556
             +SDP  LQ++L++RD ++ +LK NL RAQQ MK  ADK R D+  ++GD VLVKLQPYR
Sbjct: 1012 QASDPPTLQEELMERDKILQQLKDNLIRAQQYMKKQADKHRSDISLKIGDLVLVKLQPYR 1071

Query: 555  QTSVALRKNQKLGMRYFGPFTILAKIGKVAYKLQLPDTAKIHSVFHVSQLKLFKGTMTEP 376
            Q SVALRKNQKLG+RYFGPF I+A++G+VAYKL+LPD AKIH VFHVSQLK FKG   E 
Sbjct: 1072 QHSVALRKNQKLGLRYFGPFEIIARVGEVAYKLKLPDDAKIHPVFHVSQLKPFKGVADEQ 1131

Query: 375  YIPLPLTTVEEGPILEPEGILKTRTILRNEQQVPQVLVKWQHLQVAEATWEDKNEMAIQY 196
            Y+PLPLT  + GP ++P  +L+ RT++R  QQ+ QVL++W     A+ATWED   +  ++
Sbjct: 1132 YLPLPLTMTDIGPSIQPIDVLQVRTVIRGSQQIHQVLIQWDQYPAAQATWEDITTIQEKF 1191

Query: 195  PNLNLEDKIALEGEGDVM 142
            P+LNLEDK+A  G+G VM
Sbjct: 1192 PSLNLEDKVAFNGDGIVM 1209


>gb|PNY16671.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1284

 Score = 1585 bits (4103), Expect = 0.0
 Identities = 768/1245 (61%), Positives = 954/1245 (76%), Gaps = 8/1245 (0%)
 Frame = -1

Query: 4410 TMSSTPFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIASVHLDQEVVPW 4231
            T +  PFQVR++KL+FPRF+GKNV +WIF+AEQFF YY+TPD +RL IASVHLD++VVPW
Sbjct: 55   TSNKPPFQVRNVKLEFPRFDGKNVHEWIFRAEQFFEYYDTPDLDRLTIASVHLDKDVVPW 114

Query: 4230 FQMVNRSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYYLEFTALSNRVY 4051
            +QMV R+ PFQ+W++FTRALELDFGPS+Y+CPRA+LFKL QS +V EYYL+FT L+NRVY
Sbjct: 115  YQMVQRTHPFQSWIEFTRALELDFGPSVYECPRATLFKLNQSGTVAEYYLKFTTLANRVY 174

Query: 4050 GISNDALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXANTNVQNQKYNAG 3871
            G+S+DALIDCF+SGL +++RRDVM+HTP S+                  +N   +K+N  
Sbjct: 175  GLSSDALIDCFISGLNNDIRRDVMIHTPPSLVKAFSLAKVYEEKY---TSNTNQKKFN-- 229

Query: 3870 STAVQARAPFNP----TRNSQTQATEKAXXXXXXXXXXXXPMSQLQKNPAIKRIS-AEMQ 3706
            +T      PFN     TR+S                    PMSQ QKNP I+RIS AE Q
Sbjct: 230  TTNYATNKPFNKPEILTRDSAP----------ILNTPPTRPMSQFQKNPNIRRISPAERQ 279

Query: 3705 LRREKGLCYFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDD---DREIQKPVE 3535
            +R EKGLCY+CD+KFSF+H+CPN+ LML++                ++   +  I    E
Sbjct: 280  MRSEKGLCYWCDEKFSFTHKCPNRQLMLIQCDDSDADQMFEPMTQPEESTINSSITNQTE 339

Query: 3534 HHLSLNALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPIEPVTRCN 3355
            HHLSLNA+ G + MGV+RF G I  + V +L+DGGSSD+F+QPRIA  L LPIE   + N
Sbjct: 340  HHLSLNAMKGTSNMGVLRFTGSIEQIKVQVLIDGGSSDNFLQPRIAKFLKLPIESGPQFN 399

Query: 3354 VLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYAT 3175
            VLVGNG+ M AEG+IQ L + +QG  + VP +LLP+AG+DVILGA WLA+LGPHVADYA+
Sbjct: 400  VLVGNGETMTAEGIIQKLPLEIQGHKLDVPVFLLPIAGADVILGASWLATLGPHVADYAS 459

Query: 3174 SKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAPEDNWKDM 2995
              L+F+ + KF+TL G+  P+   AQ H FKRL   D+ISE FT+Q +++   ED +KD+
Sbjct: 460  LTLKFFWKDKFITLSGEAVPRPIPAQFHHFKRLATTDSISECFTVQWLKSADTEDIFKDL 519

Query: 2994 PVTVEPEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHSQKEQIE 2815
            P  ++PE+A LL+TY+ +FQ P  LPP R  +H I L +G+ PVKVKPYRYPHSQK QIE
Sbjct: 520  PTNIDPEIAILLHTYKNLFQTPSALPPNRTHNHTIPLIDGSNPVKVKPYRYPHSQKAQIE 579

Query: 2814 KMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELL 2635
             M+QEML++G             ILVKKKDGTWR CTDYRALNAIT+KD FP+PTVDELL
Sbjct: 580  HMIQEMLQQGIIQPSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDCFPIPTVDELL 639

Query: 2634 DELHGAKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPATFQRLM 2455
            DEL GAK+FSK DLRSGYHQIL++PEDR KTAFRTHQGHYEWLVMPFGLTNAPATFQ LM
Sbjct: 640  DELCGAKYFSKLDLRSGYHQILLQPEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQSLM 699

Query: 2454 NEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSFGLTEVE 2275
            N IFQ  LRK VLVFFDDILVYS +WH H+Q +E VL++L  + LY KLSKCSFG+ E+E
Sbjct: 700  NHIFQHALRKYVLVFFDDILVYSSNWHEHIQHLEMVLKVLQDNTLYVKLSKCSFGVMEIE 759

Query: 2274 YLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIAGPLTNL 2095
            YLGH V+G GVSMD+ KV AVL+WP+P N+KQLRGFLGLTGYYRRFI++YA IA PLT+L
Sbjct: 760  YLGHIVTGQGVSMDKEKVQAVLNWPIPKNVKQLRGFLGLTGYYRRFIQSYAKIASPLTDL 819

Query: 2094 LKKDAFQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLSQGGHPI 1915
            LKK+ F+WNE  + AF++LK A+TSAPVL LP+F  PF+LETDASG G+GAVL Q GHPI
Sbjct: 820  LKKEEFRWNEQAEQAFQKLKVAMTSAPVLALPNFKLPFILETDASGVGIGAVLQQQGHPI 879

Query: 1914 AFFSKKMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXXXXXQTP 1735
            A+FSKK+ PR Q +SAY RE  AI  ++AKFRHYL+GHKFI+RT             QTP
Sbjct: 880  AYFSKKLVPRNQKKSAYFREMLAIAESIAKFRHYLMGHKFIIRTDQKSLRSLMEQSLQTP 939

Query: 1734 EQQAWLHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVATNEHLK 1555
            EQQ WLH+F+GYDF IEYKPGK+N AADALSR+MT+SWS P+  F+E+LK  + ++  + 
Sbjct: 940  EQQEWLHRFLGYDFTIEYKPGKENIAADALSRVMTLSWSEPKYHFIEQLKVALQSDHDMS 999

Query: 1554 MIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHAGVTRTL 1375
             I+++C+    A   Y+++ GLLYWKQ+L+IP +S L+ +IL E+H SPIGGHAG+TRT+
Sbjct: 1000 NIIRKCKSGK-APIQYSIRDGLLYWKQRLMIPKDSDLLNKILFEFHTSPIGGHAGITRTI 1058

Query: 1374 ARIGAQFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVTMDFITG 1195
            ARI +QFYW  M+QD+ EYV  C+VCQQAK+  T+ AGLL+PLPIP QVW+D+ MDFITG
Sbjct: 1059 ARIKSQFYWQDMKQDITEYVQKCVVCQQAKTTNTSPAGLLQPLPIPAQVWEDIAMDFITG 1118

Query: 1194 LPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSIISDRDRV 1015
            LPPS GYT IMV+VDRLTK+AHFIPMK+DYSSKSVAEAFMH++V+LHGMPKSI+SDRD+V
Sbjct: 1119 LPPSSGYTTIMVIVDRLTKYAHFIPMKSDYSSKSVAEAFMHNIVKLHGMPKSIVSDRDKV 1178

Query: 1014 FTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWYKALCWA 835
            FTS FWQ LF+LQGT+LAMSSAYHPQ+DGQ+E +NK LE++LRCFTFNNPKSW K + WA
Sbjct: 1179 FTSSFWQQLFKLQGTSLAMSSAYHPQSDGQTEVLNKVLELFLRCFTFNNPKSWSKVISWA 1238

Query: 834  ELWYNTSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQQQL 700
            E WYNT+  TS GM+PFKALYGR+PP LT+Y A   DP  LQ++L
Sbjct: 1239 EYWYNTAFQTSIGMTPFKALYGRDPPYLTKYEAQEIDPPTLQEEL 1283


>gb|PNX94483.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1287

 Score = 1578 bits (4085), Expect = 0.0
 Identities = 781/1321 (59%), Positives = 978/1321 (74%), Gaps = 5/1321 (0%)
 Frame = -1

Query: 4683 TELRRQAETIEKNEAASRARFEELSSMQKASEARFNQLADAFEKLMQQTPTVTHGGTNSG 4504
            +E++R  E  +  +A     FE L+  +  + A+F+++  A + L+ QTP+  H G    
Sbjct: 11   SEIKRNTEETKLLQAEI---FERLARSEAENGAKFDKIFAALDILIDQTPSKHHHGAGLN 67

Query: 4503 XXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPTMSSTPFQVRHIKLDFPRFNGKNVLDWIF 4324
                                             +  PFQVR++KL+FPRF+GKNV +WIF
Sbjct: 68   N--------------------------------NRPPFQVRNVKLEFPRFDGKNVHEWIF 95

Query: 4323 KAEQFFGYYNTPDTERLIIASVHLDQEVVPWFQMVNRSRPFQTWMDFTRALELDFGPSMY 4144
            +AEQFF YY+TPD +RL IASVHLD++VVPW+QM+ R+ PF +W++ TRALELDFGPS+Y
Sbjct: 96   RAEQFFEYYDTPDPDRLTIASVHLDKDVVPWYQMMQRTHPFMSWIELTRALELDFGPSIY 155

Query: 4143 DCPRASLFKLQQSKSVNEYYLEFTALSNRVYGISNDALIDCFVSGLKDELRRDVMLHTPT 3964
            +CPRA+LFKL Q+ SV +YYL+FT+L+NRVYG+SNDAL+DCFVSGL +E+RRDV++HTP 
Sbjct: 156  ECPRATLFKLNQTGSVADYYLQFTSLANRVYGLSNDALVDCFVSGLSNEIRRDVLIHTPP 215

Query: 3963 SITXXXXXXXXXXXXXXXANTNVQNQKYNAGSTAVQARAPFNPTRNSQTQATEKAXXXXX 3784
            S+                  +N+++QK N   T      PF  T   +T     A     
Sbjct: 216  SLVKAVSLAKVYEEKYA---SNLKSQKSN--HTNYSTNQPF--TNKPETITRNSAPILNT 268

Query: 3783 XXXXXXXPMSQLQKNPAIKRIS-AEMQLRREKGLCYFCDDKFSFSHRCPNKHLMLLELXX 3607
                    MSQ QKNP IKRIS AE Q+RR+KGLCY+CDDKFS++H+CPN+ LMLL+   
Sbjct: 269  PPTRP---MSQFQKNPNIKRISPAERQVRRDKGLCYWCDDKFSYTHKCPNRQLMLLQYDD 325

Query: 3606 XXXXXXXXXQANSDD----DREIQKPVEHHLSLNALNGATGMGVIRFKGCIGPVDVSILL 3439
                      ++S +      E  +P EHHLS NA+ G + MG++RF G I  + V IL+
Sbjct: 326  NEEENVVEIPSDSSELAINTLETTQP-EHHLSFNAMKGNSSMGILRFSGTIEHIQVQILI 384

Query: 3438 DGGSSDSFIQPRIAHCLNLPIEPVTRCNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAY 3259
            DGGSSD+F+QPRIA  L LPIEP     VLVGNG+ M AEGVIQNL + +QG ++ VP +
Sbjct: 385  DGGSSDNFLQPRIARFLKLPIEPGPVFKVLVGNGEIMTAEGVIQNLALNIQGTELQVPVF 444

Query: 3258 LLPVAGSDVILGAPWLASLGPHVADYATSKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKR 3079
            LLPVAG+DVILGA WLA+LGPHVADYA+  L+F++ GKFVTLQG+  P+ A AQ H FKR
Sbjct: 445  LLPVAGADVILGASWLATLGPHVADYASLTLKFFINGKFVTLQGEATPRPAAAQFHHFKR 504

Query: 3078 LQHMDAISELFTLQQIEAVAPEDNWKDMPVTVEPEMATLLYTYREVFQVPKGLPPPRELS 2899
            L + DAI+E FT+Q +++   ED ++D+P  +EPE+A LL+TY+E+F+ P  LPP R  +
Sbjct: 505  LHYTDAIAECFTIQWLKSHTDEDIFRDLPTNIEPEIAILLHTYKELFKTPNTLPPHRSHN 564

Query: 2898 HEILLKEGAPPVKVKPYRYPHSQKEQIEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGT 2719
            H I L EG  PVKVKPYRYPHSQK QIE MVQ+ML++G             +LVKKKDGT
Sbjct: 565  HSIPLIEGHNPVKVKPYRYPHSQKNQIELMVQDMLQQGIIQPSTSPFSSPIVLVKKKDGT 624

Query: 2718 WRCCTDYRALNAITIKDSFPMPTVDELLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTA 2539
            WR CTDYRALNAIT+KDSFP+PTVDELLDEL GA FFSK DLRSGYHQIL++PEDR KTA
Sbjct: 625  WRFCTDYRALNAITVKDSFPIPTVDELLDELFGAXFFSKLDLRSGYHQILLQPEDRYKTA 684

Query: 2538 FRTHQGHYEWLVMPFGLTNAPATFQRLMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQ 2359
            FRTHQG YEWLVMPFGLTNAPATFQ LMN IFQ  LRK VLVFFDDILVYS +W  HL  
Sbjct: 685  FRTHQGLYEWLVMPFGLTNAPATFQGLMNHIFQHALRKYVLVFFDDILVYSSTWQDHLSH 744

Query: 2358 VECVLQILSQHVLYAKLSKCSFGLTEVEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQ 2179
            ++ VL+ L  + L+ KLSKCSFG++E+EYLGH V+G GVSMDR+K+ AVL+WP+P N+KQ
Sbjct: 745  LDTVLKTLLDNDLFVKLSKCSFGVSEIEYLGHLVTGQGVSMDRDKIQAVLEWPIPKNIKQ 804

Query: 2178 LRGFLGLTGYYRRFIKAYASIAGPLTNLLKKDAFQWNENTQLAFEQLKKAITSAPVLILP 1999
            LRGFLGLTGYYRRFIK YA +A PLT+LLKK+ + WN  T+LAF++LK A+TSAPVL LP
Sbjct: 805  LRGFLGLTGYYRRFIKHYARLAAPLTDLLKKENYNWNAQTELAFQELKAAMTSAPVLALP 864

Query: 1998 DFSQPFVLETDASGTGVGAVLSQGGHPIAFFSKKMAPRMQLQSAYTREFYAITAALAKFR 1819
            +F +PF+LETDASG GVGAVL Q GHPIA+FSKK+ PR Q +SAY RE  AI+ A+AKFR
Sbjct: 865  NFQKPFILETDASGVGVGAVLHQDGHPIAYFSKKLVPRNQKKSAYFREMLAISEAIAKFR 924

Query: 1818 HYLLGHKFILRTXXXXXXXXXXXXXQTPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSR 1639
            HYLLGH+FI+RT             QTPEQQ WLHKF+GYDF IEYKPGK+N AADALSR
Sbjct: 925  HYLLGHRFIIRTDQKSLRSLMDQSLQTPEQQQWLHKFLGYDFVIEYKPGKENLAADALSR 984

Query: 1638 LMTMSWSGPENVFLEELKKEVATNEHLKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIP 1459
            +MT++WS P +  + ++K E+  + +   I+++C     +   Y ++ G+LYWK ++VIP
Sbjct: 985  VMTLAWSEPISQLITQIKGEIKADIYWSDIIEKCISQGNSYLQYTLRDGVLYWKNRVVIP 1044

Query: 1458 LESKLIQQILKEYHDSPIGGHAGVTRTLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSA 1279
             +S LIQQ+L E+H SPIGGHAG TRTLARI +QFYW  M++DV EY+  C++CQQAK+ 
Sbjct: 1045 QKSALIQQVLHEFHSSPIGGHAGFTRTLARIKSQFYWVAMKKDVLEYIQNCVICQQAKTT 1104

Query: 1278 TTAYAGLLEPLPIPNQVWDDVTMDFITGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSS 1099
             T  AGLL+PLPIP QVW+D+ MDFITGLP S+GYT I+VVVDRLTK+AHF+PMKTDYSS
Sbjct: 1105 NTLPAGLLQPLPIPTQVWEDIAMDFITGLPLSYGYTTILVVVDRLTKYAHFLPMKTDYSS 1164

Query: 1098 KSVAEAFMHSVVRLHGMPKSIISDRDRVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSE 919
            KSVAE FM+ +V+LHGMPKSI+SDRD+VFTS FWQ+LF+LQGT+LAMSSAYHPQ+DGQ+E
Sbjct: 1165 KSVAEVFMNHIVKLHGMPKSIVSDRDKVFTSSFWQHLFKLQGTSLAMSSAYHPQSDGQTE 1224

Query: 918  AVNKCLEMYLRCFTFNNPKSWYKALCWAELWYNTSHHTSAGMSPFKALYGREPPMLTRYA 739
             +NK LE++LRCFTFNNPKSWYKAL W+E WYNT+ HTS GM+PFKALYGREPP LTRY 
Sbjct: 1225 VLNKGLELFLRCFTFNNPKSWYKALAWSEFWYNTALHTSIGMTPFKALYGREPPTLTRYE 1284

Query: 738  A 736
            A
Sbjct: 1285 A 1285


>gb|PNX96484.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1258

 Score = 1553 bits (4020), Expect = 0.0
 Identities = 758/1215 (62%), Positives = 921/1215 (75%), Gaps = 3/1215 (0%)
 Frame = -1

Query: 3759 MSQLQKNPAIKRIS-AEMQLRREKGLCYFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXX 3583
            MSQ Q NP +KRIS AE QLRR+KGLCY+CDDKFSF+H+CPN+ LMLL+           
Sbjct: 1    MSQFQTNPNVKRISPAERQLRRDKGLCYWCDDKFSFTHKCPNRQLMLLQYEDSDDQVLDE 60

Query: 3582 XQANSDDDRE--IQKPVEHHLSLNALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQ 3409
                 D           E HLS+NA+ G++ MGV+RF G I  + V IL+DGGSSD+F+Q
Sbjct: 61   MTQPPDQTTNGPTNNLPELHLSMNAMKGSSHMGVLRFTGAIEHIQVQILIDGGSSDNFVQ 120

Query: 3408 PRIAHCLNLPIEPVTRCNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVI 3229
            PRIA  L LPIEP     VLVGNG+ M AEG+++ L + VQG  + VP YLLPVAG+DVI
Sbjct: 121  PRIAKFLKLPIEPAPVFKVLVGNGEVMTAEGIVKQLPLDVQGHRLQVPVYLLPVAGADVI 180

Query: 3228 LGAPWLASLGPHVADYATSKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKRLQHMDAISEL 3049
            LGA WL++LGPHVADYA+  ++F+L  KFVTL G+   +   AQ H  KR  H DAI E 
Sbjct: 181  LGASWLSTLGPHVADYASLTIKFFLHDKFVTLVGEPVARPEPAQFHHMKRFHHTDAIDEC 240

Query: 3048 FTLQQIEAVAPEDNWKDMPVTVEPEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAP 2869
            F +Q  +     D +K++P   EPE+A LLY Y+ VF+ P  LPP R  +H I L EG  
Sbjct: 241  FAIQWFKDNEVADIFKELPTNTEPEIAMLLYNYQAVFKTPTTLPPTRAHNHAIPLLEGTN 300

Query: 2868 PVKVKPYRYPHSQKEQIEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRAL 2689
            PVKVKPYRYPHSQK QIE MVQ+ML++G             ILVKKKDGTWR CTDYRAL
Sbjct: 301  PVKVKPYRYPHSQKTQIEIMVQDMLQQGIIQPSTSPFSSPIILVKKKDGTWRFCTDYRAL 360

Query: 2688 NAITIKDSFPMPTVDELLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEW 2509
            NAIT+KDSFP+PTVDELLDEL GAK FSK DLRSGYHQIL++PEDR KTAFRTHQGHYEW
Sbjct: 361  NAITVKDSFPIPTVDELLDELFGAKHFSKLDLRSGYHQILLQPEDRHKTAFRTHQGHYEW 420

Query: 2508 LVMPFGLTNAPATFQRLMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQ 2329
            LVMPFGLTNAPATFQ LMN IFQ  LRK VLVFFDDILVYS +WH HL+ +  VLQ+L  
Sbjct: 421  LVMPFGLTNAPATFQSLMNTIFQTVLRKYVLVFFDDILVYSKTWHEHLKHLAAVLQVLQD 480

Query: 2328 HVLYAKLSKCSFGLTEVEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGY 2149
            + LY KLSKCSFG+ E+EYLGH VSG GVSMD+ K+ AV+DWP P N+KQLRGFLGLTGY
Sbjct: 481  NQLYVKLSKCSFGVLEIEYLGHVVSGEGVSMDKTKIQAVVDWPPPKNIKQLRGFLGLTGY 540

Query: 2148 YRRFIKAYASIAGPLTNLLKKDAFQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLET 1969
            YRRFI++YA IA PLT+LLKK+A+ W    + AF++LK AIT+APVL LPDF++PFVLET
Sbjct: 541  YRRFIQSYAKIASPLTDLLKKEAYTWTSQEESAFQKLKHAITTAPVLALPDFTKPFVLET 600

Query: 1968 DASGTGVGAVLSQGGHPIAFFSKKMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFIL 1789
            DASG G+GAVL Q GHPIA+FSKK+ PR Q +SAY RE  AI  A+AKFRHYLLGHKFI+
Sbjct: 601  DASGIGIGAVLHQEGHPIAYFSKKLVPRNQRKSAYFREMLAIAEAIAKFRHYLLGHKFII 660

Query: 1788 RTXXXXXXXXXXXXXQTPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPE 1609
            RT             QTP+QQ WLH+F+GYDF IEYKPGK+N AADALSR+MTM+WS P+
Sbjct: 661  RTDQKSLRNLMEQALQTPDQQEWLHRFLGYDFSIEYKPGKENVAADALSRVMTMAWSEPQ 720

Query: 1608 NVFLEELKKEVATNEHLKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQIL 1429
               L +++  +  +  L  I+Q+C QN   + +Y VK  LL+WK ++VIP  S+LI+Q+L
Sbjct: 721  YKLLHQIRAALKQDSTLLGIMQKCVQNNATNSHYTVKDELLFWKHRIVIPKNSELIKQVL 780

Query: 1428 KEYHDSPIGGHAGVTRTLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEP 1249
             E H SPIGGHAG+ RTLAR+ +QFYWP M+ D+ +YV  C +CQ+AK+  T  AGLL+P
Sbjct: 781  YELHTSPIGGHAGMARTLARVKSQFYWPDMKTDIADYVQNCAICQKAKTTNTLPAGLLQP 840

Query: 1248 LPIPNQVWDDVTMDFITGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHS 1069
            LPIP+QVW+DV MDFITGLP S GYT I+VV+DRLTK+AHFIP+KTDYSSK VAEA M +
Sbjct: 841  LPIPSQVWEDVAMDFITGLPSSQGYTTILVVIDRLTKYAHFIPLKTDYSSKIVAEAVMDN 900

Query: 1068 VVRLHGMPKSIISDRDRVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYL 889
            +V+LHGMPKSI+SDRD+VFTS FWQ LF+LQGTTLAMSSAYHPQ+DGQSE +NK LE++L
Sbjct: 901  IVKLHGMPKSIVSDRDKVFTSSFWQQLFKLQGTTLAMSSAYHPQSDGQSEVLNKTLELFL 960

Query: 888  RCFTFNNPKSWYKALCWAELWYNTSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQ 709
            RCFTF+NPKSW KAL W+E WYNT+  TS GM+PFKALYGR+PP L RY   ++DP  LQ
Sbjct: 961  RCFTFDNPKSWCKALSWSEFWYNTAFQTSIGMTPFKALYGRDPPALIRYETQANDPPTLQ 1020

Query: 708  QQLLDRDAVITELKRNLARAQQIMKNNADKKRRDVVFEVGDQVLVKLQPYRQTSVALRKN 529
            ++L++RD +I +LK NL +AQQ MK  ADK R DV  +VGD VLVKLQPYRQ SVALRKN
Sbjct: 1021 EKLMERDRIIQQLKLNLEKAQQYMKKQADKHRVDVKLQVGDLVLVKLQPYRQQSVALRKN 1080

Query: 528  QKLGMRYFGPFTILAKIGKVAYKLQLPDTAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTV 349
            QKLGMRYFGPF ++AK+G+VAYKL+LP+ AKIH VFHVSQLK FKG   E Y+PLPL+  
Sbjct: 1081 QKLGMRYFGPFEVIAKVGEVAYKLKLPEHAKIHPVFHVSQLKPFKGDNQEQYMPLPLSMT 1140

Query: 348  EEGPILEPEGILKTRTILRNEQQVPQVLVKWQHLQVAEATWEDKNEMAIQYPNLNLEDKI 169
            + GP+++P  +L TRTI+R  Q++ QVL++W     AEATWED + +  ++P  NLEDK+
Sbjct: 1141 DTGPMIQPVSVLATRTIIRGAQRIQQVLIQWDQYSTAEATWEDVDALQSKFPAFNLEDKV 1200

Query: 168  ALEGEGDVMNNKSVN 124
            A  G+G VM+    N
Sbjct: 1201 AFIGDGIVMSPMEEN 1215


>dbj|GAU23504.1| hypothetical protein TSUD_39830 [Trifolium subterraneum]
          Length = 1160

 Score = 1522 bits (3940), Expect = 0.0
 Identities = 749/1150 (65%), Positives = 890/1150 (77%), Gaps = 4/1150 (0%)
 Frame = -1

Query: 3720 SAEMQLRREKGLCYFCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDDDREIQ-- 3547
            SAEMQLRREKGLCY CDDK+SF+H+CPNKHLM+L+L            AN   D  I   
Sbjct: 3    SAEMQLRREKGLCYTCDDKWSFNHKCPNKHLMILQLAAEDIEEPP---ANEPPDPPITDS 59

Query: 3546 --KPVEHHLSLNALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPIE 3373
              K +E HLSLNAL G++G+G I+F G IG + V IL+DGGSSD+F+QPRIA  L L +E
Sbjct: 60   ETKQLELHLSLNALKGSSGVGTIKFTGHIGHIAVQILVDGGSSDNFLQPRIAKFLKLDVE 119

Query: 3372 PVTRCNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGPH 3193
                  VLVGNG  +  EG I NL V VQG ++ +P YLLPV G+D+ILGA WLA+LGPH
Sbjct: 120  SAPLFKVLVGNGHSLNPEGSISNLCVTVQGHEMHMPVYLLPVVGADLILGATWLATLGPH 179

Query: 3192 VADYATSKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAPE 3013
            VADY    L+F+  GKF+TL G+       A LH  +RL   +AI   F + + + +   
Sbjct: 180  VADYQALCLKFFYNGKFITLHGEKSILPQQAHLHHMRRLYQTNAIEACFAIHRADPMIHL 239

Query: 3012 DNWKDMPVTVEPEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHS 2833
            DNW ++P  +EPEM  LL  Y+ VF  P GLPPPR+ +H I L  GA  VKV+PYRYP S
Sbjct: 240  DNWLELPENMEPEMVLLLNNYKAVFHKPTGLPPPRQQNHTIPLLGGAKHVKVRPYRYPQS 299

Query: 2832 QKEQIEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMP 2653
            QKEQIE M+QEML EG             +LVKKKDGTWR CTDYRALNAITIKDSFPMP
Sbjct: 300  QKEQIELMIQEMLAEGIIQPSNSPFSSPIVLVKKKDGTWRFCTDYRALNAITIKDSFPMP 359

Query: 2652 TVDELLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPA 2473
            TVDELLDEL GA+ FSK DLRSGYHQILV+P DR KTAFRTHQGHYEWLVMPFGLTNAPA
Sbjct: 360  TVDELLDELFGAQCFSKLDLRSGYHQILVEPADRYKTAFRTHQGHYEWLVMPFGLTNAPA 419

Query: 2472 TFQRLMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSF 2293
            +FQ LMN+IFQP LRK VLVFFDDILVYSPS+ THLQ +E VLQIL  H L+ KLSKCSF
Sbjct: 420  SFQCLMNQIFQPLLRKYVLVFFDDILVYSPSFSTHLQHLETVLQILQHHTLFVKLSKCSF 479

Query: 2292 GLTEVEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIA 2113
            G+ EV+YLGHTVSGSGV+MD+ KV  VLDWP P+N+KQLRGFLGLTGYYRRFIK+YA+IA
Sbjct: 480  GMKEVDYLGHTVSGSGVAMDKLKVQTVLDWPKPTNVKQLRGFLGLTGYYRRFIKSYATIA 539

Query: 2112 GPLTNLLKKDAFQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLS 1933
             PLTNLLKK+AF+WN N + AF  LK AITSAPVL LP F+QPF LETDASGTGVGAVLS
Sbjct: 540  TPLTNLLKKEAFEWNSNAEQAFSHLKSAITSAPVLALPQFNQPFTLETDASGTGVGAVLS 599

Query: 1932 QGGHPIAFFSKKMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXX 1753
            QGGHPIAFFSKKM PRMQ QSAYTRE +AIT A+AKFRHYLLGHKF ++T          
Sbjct: 600  QGGHPIAFFSKKMVPRMQKQSAYTRELFAITEAIAKFRHYLLGHKFTIKTDQKSLRSLMD 659

Query: 1752 XXXQTPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVA 1573
               QTPEQQAWLHKFIGYDF IEYKPGK+N AADALSR++ ++WS P+  FL+EL+   +
Sbjct: 660  QSLQTPEQQAWLHKFIGYDFNIEYKPGKENVAADALSRVLLVAWSEPKLQFLDELRAATS 719

Query: 1572 TNEHLKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHA 1393
             +  L+ +  Q       D  Y    GL+++  ++++P   +L ++IL E+H SPIGGHA
Sbjct: 720  NDADLRTMSSQ-------DPRYVHHDGLIFFNNRIMVPTHQELKEKILFEFHSSPIGGHA 772

Query: 1392 GVTRTLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVT 1213
            G+TRTLARI AQFYW  M+QD++++V  C++CQQAK  T A AGLL+PLPIP QVW+DV 
Sbjct: 773  GITRTLARISAQFYWVNMKQDIQQFVQNCVICQQAKHETRAPAGLLQPLPIPEQVWEDVA 832

Query: 1212 MDFITGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSII 1033
            MDFITGLP SHGYTVIMVV+DRLTK++HFIP+K DY+SKSVAEAFM  +V+LHG+PKSI+
Sbjct: 833  MDFITGLPSSHGYTVIMVVIDRLTKYSHFIPLKMDYNSKSVAEAFMKYIVKLHGLPKSIV 892

Query: 1032 SDRDRVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWY 853
            SDRD+VF S+FW++LF+LQGTTLAMSSAYHPQTDGQSEA+NKCLEMYLRC TF  PK+W 
Sbjct: 893  SDRDKVFVSQFWKDLFKLQGTTLAMSSAYHPQTDGQSEALNKCLEMYLRCLTFQQPKTWS 952

Query: 852  KALCWAELWYNTSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVITE 673
            KAL WAE WYNT+HHTS GM+PF+ALYGR PP L RY  +  D   +QQQL DRD ++ +
Sbjct: 953  KALDWAEYWYNTAHHTSLGMTPFRALYGRHPPSLVRYHPSPHDAATVQQQLSDRDNLLAQ 1012

Query: 672  LKRNLARAQQIMKNNADKKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPFT 493
            +K NL RAQQ+MK+ ADK RR VVFEVGD+VLVKLQPYRQ S+ALRK+QKLGMR+FGPFT
Sbjct: 1013 IKVNLCRAQQVMKDQADKHRRHVVFEVGDKVLVKLQPYRQNSIALRKHQKLGMRFFGPFT 1072

Query: 492  ILAKIGKVAYKLQLPDTAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGIL 313
            I+ K+G VAYKLQLP  A+IH VFH+SQLKLFKG+ +EPY+PLPLTT E GPIL+P  +L
Sbjct: 1073 IIEKVGMVAYKLQLPTEARIHPVFHISQLKLFKGSCSEPYMPLPLTTHELGPILQPARVL 1132

Query: 312  KTRTILRNEQ 283
            + R +L+  +
Sbjct: 1133 QDRVVLKGTE 1142


>gb|KYP39590.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
          Length = 1292

 Score = 1470 bits (3806), Expect = 0.0
 Identities = 708/1247 (56%), Positives = 914/1247 (73%), Gaps = 1/1247 (0%)
 Frame = -1

Query: 4395 PFQVRHIKLDFPRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIASVHLDQEVVPWFQMVN 4216
            P QVR++KLDFPRF+G +VL WIF+AEQFF YYNTPD +R++IA+VH ++ VVPW+QM+ 
Sbjct: 55   PLQVRNVKLDFPRFDGSDVLQWIFRAEQFFEYYNTPDEQRIVIAAVHFEKNVVPWYQMMQ 114

Query: 4215 RSRPFQTWMDFTRALELDFGPSMYDCPRASLFKLQQSKSVNEYYLEFTALSNRVYGISND 4036
            R+ P  +W   TR+LEL+FGPS +D PR++LFKL Q+ SVN+YY+EFT L+NR+YG+S +
Sbjct: 115  RTSPIISWNTLTRSLELEFGPSPFDSPRSTLFKLVQTGSVNDYYIEFTNLANRIYGVSAE 174

Query: 4035 ALIDCFVSGLKDELRRDVMLHTPTSITXXXXXXXXXXXXXXXANTNVQNQKYNAGSTAVQ 3856
            AL+DCF+SGLK +++R+++   P S+                    +  +KY+  S   Q
Sbjct: 175  ALLDCFISGLKPDIKREIIAQAPNSLLKAISL------------ARLFEEKYSFRSR--Q 220

Query: 3855 ARAPFNPTRNSQTQATEKAXXXXXXXXXXXXPMSQLQKNPAIKRIS-AEMQLRREKGLCY 3679
            +    N + ++  Q+                P +   +N A++++S AEMQ RRE+GLC+
Sbjct: 221  SFVTRNTSHSAGNQSYTNPAQQPLLNTPNIKPAAFPNRNTAVRKMSPAEMQSRRERGLCF 280

Query: 3678 FCDDKFSFSHRCPNKHLMLLELXXXXXXXXXXXQANSDDDREIQKPVEHHLSLNALNGAT 3499
             CD++FS +HRCPNK  +LL++              + D   ++  +EHHLS NAL G  
Sbjct: 281  TCDERFSANHRCPNKQYLLLQVEDEEELEE----TTNVDSTALEDELEHHLSFNALKGVA 336

Query: 3498 GMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPIEPVTRCNVLVGNGQKMQAE 3319
             +G +RF G I   +V ILLD GSSD+F+QP++AH L LPIEP     V+VGNG  +  E
Sbjct: 337  TVGTMRFTGSIAGKEVHILLDSGSSDNFLQPKLAHYLKLPIEPAAGLQVMVGNGSSLSTE 396

Query: 3318 GVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGPHVADYATSKLRFYLEGKFV 3139
            G I NL V+VQG  + +P YLL V+G+D++LGA WLA+LGPH+ADY +  ++FY + K V
Sbjct: 397  GKILNLQVQVQGQVLQLPVYLLSVSGADLVLGAAWLATLGPHIADYGSLTIKFYKDKKLV 456

Query: 3138 TLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAPEDNWKDMPVTVEPEMATLL 2959
            TLQG+     A++Q H  KRL H   I+E++TLQ + +    D WKD+P  V+PE+A LL
Sbjct: 457  TLQGEKSRPAAMSQFHHLKRLNHTQGIAEVYTLQLLSSFVETDQWKDIPDNVDPEIALLL 516

Query: 2958 YTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHSQKEQIEKMVQEMLEEGXX 2779
            + YR++F  P GLPPPR  +H I L +G+ PVKV+PY+YPHSQK+QIE M++EMLE+G  
Sbjct: 517  HYYRQIFAKPTGLPPPRSQNHRIPLLQGSGPVKVRPYKYPHSQKQQIELMIKEMLEDGII 576

Query: 2778 XXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAKFFSKF 2599
                       ILVKKKDG+WR CTDYRALNAIT+KDSFP+PTV++LLDEL GAK+FSK 
Sbjct: 577  APSSSPFSSPIILVKKKDGSWRFCTDYRALNAITVKDSFPIPTVEDLLDELFGAKYFSKL 636

Query: 2598 DLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPATFQRLMNEIFQPFLRKCV 2419
            DLR+GYHQILV+ EDR KTAFRTHQGHYEWLVMPFGLTNAPATFQ LMN+IFQ  LRK V
Sbjct: 637  DLRAGYHQILVQEEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQNLMNDIFQGLLRKSV 696

Query: 2418 LVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSFGLTEVEYLGHTVSGSGVS 2239
            LVFFDDILVYS SW  HLQ ++ VL IL++H LYAK+SKCSFGL +VEYLGH VSG GVS
Sbjct: 697  LVFFDDILVYSSSWFLHLQHLQQVLDILAKHELYAKMSKCSFGLEQVEYLGHVVSGDGVS 756

Query: 2238 MDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIAGPLTNLLKKDAFQWNENT 2059
            M+ +KV AV+DWPVP  +KQLRGFLGLTGYYRRFI+ YASIA PLT+LLKKD F+W+   
Sbjct: 757  METSKVQAVIDWPVPKTIKQLRGFLGLTGYYRRFIQGYASIANPLTDLLKKDNFKWSNEA 816

Query: 2058 QLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLSQGGHPIAFFSKKMAPRMQ 1879
              AF  LK+AIT+APVL LPDFSQPFVLETDASG+G+GAVLSQ  HPIAFFSKK++ RM 
Sbjct: 817  DAAFIALKQAITTAPVLSLPDFSQPFVLETDASGSGIGAVLSQNKHPIAFFSKKLSNRMT 876

Query: 1878 LQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXXXXXQTPEQQAWLHKFIGY 1699
             QSAYTREFYAIT A+AKFRHYLLGH+FI+RT             QTPEQQAWLHKF+GY
Sbjct: 877  KQSAYTREFYAITEAIAKFRHYLLGHRFIIRTDQKSLKSLLDQTLQTPEQQAWLHKFLGY 936

Query: 1698 DFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVATNEHLKMIVQQCEQNTVA 1519
            DF IEYKPG +N AADALSR   M+ +   +  + ++K  + ++  L+ I+    Q    
Sbjct: 937  DFSIEYKPGTENLAADALSRSFFMASAVTASDLVHQIKAALGSDTALQPILTAHSQGKAL 996

Query: 1518 DRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHAGVTRTLARIGAQFYWPKM 1339
               Y+   GLL+WK ++V+P    +  QIL+E+H SP+GGH+G+ RT AR+ AQF+WP M
Sbjct: 997  SAPYSFLDGLLFWKGRIVVPNVPAIQNQILQEFHSSPLGGHSGIARTFARVAAQFFWPGM 1056

Query: 1338 RQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVTMDFITGLPPSHGYTVIMV 1159
             +D+K +V  C VCQQAK+AT   AGLL+PLPIP Q+W+D++MDFI GLPP+ GYTVI V
Sbjct: 1057 NKDIKNFVQQCCVCQQAKTATVLPAGLLQPLPIPTQIWEDISMDFIVGLPPAEGYTVIFV 1116

Query: 1158 VVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSIISDRDRVFTSKFWQNLFEL 979
            +VDRL+K+AHF P+K+D++SK VA+ F+H+VV+LHG P SI+SDRD+VFTS FWQ+L +L
Sbjct: 1117 IVDRLSKYAHFAPLKSDFNSKRVADVFLHTVVKLHGFPNSIVSDRDKVFTSTFWQHLLKL 1176

Query: 978  QGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWYKALCWAELWYNTSHHTSA 799
             GTTL +S+AYHPQ+DGQ+EA+NKCLEMYLRCFT   PK W K L WAE WYNTS H SA
Sbjct: 1177 SGTTLKLSTAYHPQSDGQTEALNKCLEMYLRCFTHEKPKDWIKFLPWAEFWYNTSFHHSA 1236

Query: 798  GMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVITELKRNL 658
             MSPFK +YGR+PP L +Y+ +++DP  +Q+ LL RD V+ +LK NL
Sbjct: 1237 QMSPFKVVYGRDPPTLVKYSHSATDPPSIQEMLLQRDRVLAQLKVNL 1283


>dbj|GAU35592.1| hypothetical protein TSUD_295280 [Trifolium subterraneum]
          Length = 1358

 Score = 1402 bits (3628), Expect = 0.0
 Identities = 694/1137 (61%), Positives = 839/1137 (73%)
 Frame = -1

Query: 3540 VEHHLSLNALNGATGMGVIRFKGCIGPVDVSILLDGGSSDSFIQPRIAHCLNLPIEPVTR 3361
            ++HHLSLNA+NG + +G +R  G +   DV IL+DGGS+D+F QPR+A  L LPIEP++ 
Sbjct: 199  IDHHLSLNAMNGCSSLGTLRLTGQVLGKDVHILVDGGSTDNFFQPRLAKFLKLPIEPISN 258

Query: 3360 CNVLVGNGQKMQAEGVIQNLTVRVQGIDITVPAYLLPVAGSDVILGAPWLASLGPHVADY 3181
             NVLVGNG KM AEG I NLTV VQG ++ +P +LLP A +D+ILG+ WLA+LGPHVADY
Sbjct: 259  FNVLVGNGHKMTAEGKITNLTVSVQGHEMMIPVFLLPFASADLILGSSWLATLGPHVADY 318

Query: 3180 ATSKLRFYLEGKFVTLQGDTDPKTAIAQLHQFKRLQHMDAISELFTLQQIEAVAPEDNWK 3001
            +   L+F+L GKFVTLQ   +     AQLH   RL +  AI+EL+T+     +       
Sbjct: 319  SALSLKFFLNGKFVTLQCTANHTPNSAQLHHLSRLHNTHAIAELYTMYYFNMMYEPTPPL 378

Query: 3000 DMPVTVEPEMATLLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHSQKEQ 2821
            ++  TV  ++A++L  +  +F  P  LPP R  +H I L +    VKV+PYRYPHSQK Q
Sbjct: 379  ELSSTVPHDLASILTQFSHLFHSPTILPPQRSENHYIPLVDETKVVKVRPYRYPHSQKAQ 438

Query: 2820 IEKMVQEMLEEGXXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDE 2641
            IE MV++ML++G             ILVKKK GTWR CTDYRALNA+TIKDSFP+PTVDE
Sbjct: 439  IELMVEDMLKQGIIQPSTSPFSSPIILVKKKGGTWRFCTDYRALNALTIKDSFPLPTVDE 498

Query: 2640 LLDELHGAKFFSKFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPATFQR 2461
            LLDEL+GAKFFSK DLRSGYHQIL+ P+DR KTAFRTH GHYEWLVMPFGL+NAPA+FQ 
Sbjct: 499  LLDELYGAKFFSKLDLRSGYHQILMNPKDRHKTAFRTHHGHYEWLVMPFGLSNAPASFQS 558

Query: 2460 LMNEIFQPFLRKCVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSFGLTE 2281
            LMN++FQ  LRK VLVFFDDILVY+ +W +HL  +E VLQ+L  H L+ KLSKCSFG++E
Sbjct: 559  LMNQVFQKVLRKFVLVFFDDILVYNATWSSHLLHLEIVLQLLDHHKLFVKLSKCSFGMSE 618

Query: 2280 VEYLGHTVSGSGVSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIAGPLT 2101
            V+YLGHT+ G GV MD+ KV AVL WP P+NLKQLRGFLGLTGYYRRFIK+YA+IA PLT
Sbjct: 619  VDYLGHTIFGMGVIMDKTKVQAVLQWPTPTNLKQLRGFLGLTGYYRRFIKSYATIASPLT 678

Query: 2100 NLLKKDAFQWNENTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLSQGGH 1921
            +LLKKD+F W++N   AF  LK+AITSAPVLILP+FSQPF+LETDASG G+GAVLSQ GH
Sbjct: 679  DLLKKDSFNWSDNAMKAFNTLKQAITSAPVLILPNFSQPFMLETDASGIGIGAVLSQQGH 738

Query: 1920 PIAFFSKKMAPRMQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXXXXXQ 1741
            PIA+FSKK+ P  Q QS Y REF AIT ALAKFRHYLLGHKFI+RT             Q
Sbjct: 739  PIAYFSKKLGPTSQKQSGYLREFRAITEALAKFRHYLLGHKFIIRTDQQSLESLLDQTLQ 798

Query: 1740 TPEQQAWLHKFIGYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVATNEH 1561
            TPEQQAWLHKFIG+DF IEYKPGKDN+AADALSR+ ++SWS P++ FL++L +E+   ++
Sbjct: 799  TPEQQAWLHKFIGFDFTIEYKPGKDNKAADALSRMFSLSWSEPQSQFLKDLHQEIQRCDY 858

Query: 1560 LKMIVQQCEQNTVADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHAGVTR 1381
               I  QC  +   D  YAV+ GLLYW  +L IP +S +I +IL E+HDSPIGGHAG+TR
Sbjct: 859  FYPIFLQCVSDKPLDPAYAVRDGLLYWNNRLAIPPKSAMISKILTEFHDSPIGGHAGITR 918

Query: 1380 TLARIGAQFYWPKMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVTMDFI 1201
            TLARI AQF+WP MRQ + +YV  C +CQQAK  T+   GLL PLPIP  VW+D+ MDFI
Sbjct: 919  TLARISAQFFWPHMRQTISQYVKQCSICQQAKHTTSLPLGLLCPLPIPKHVWEDIAMDFI 978

Query: 1200 TGLPPSHGYTVIMVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSIISDRD 1021
            TG P S G+TVI+VVVDR TKF HF  +K D+ SK VAE  M  +V+L+GMPKSI+SDRD
Sbjct: 979  TGFPNSGGFTVILVVVDRFTKFGHFFALKKDFDSKKVAEIMMQHIVKLYGMPKSIVSDRD 1038

Query: 1020 RVFTSKFWQNLFELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWYKALC 841
            +VFTSKFWQ+LF+LQGTTLAMSSAYHPQ+DGQ+EA+NKCLEMYLRC TF NP  W K L 
Sbjct: 1039 KVFTSKFWQHLFKLQGTTLAMSSAYHPQSDGQTEALNKCLEMYLRCLTFANPNIWSKMLH 1098

Query: 840  WAELWYNTSHHTSAGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVITELKRN 661
             A+ WYNTS HTSA M+PFKALYG++PP LTR                          +N
Sbjct: 1099 LAQYWYNTSFHTSAAMTPFKALYGKDPPTLTR------------------------SNQN 1134

Query: 660  LARAQQIMKNNADKKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPFTILAK 481
            L +AQQ MK  ADKKR  + F +GD VLVKLQPYRQT VA R N K  ++YFGPF + AK
Sbjct: 1135 LHKAQQAMKFQADKKRLPMEFTIGDMVLVKLQPYRQTVVATRANHKSSLKYFGPFPVTAK 1194

Query: 480  IGKVAYKLQLPDTAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGILKTRT 301
            IG +AYKLQLP TA+IH VFH+SQLK F G+ T+PY PL  TT   GP+L+PE ILK RT
Sbjct: 1195 IGSIAYKLQLPSTARIHPVFHISQLKKFNGSATDPYYPLSDTTTVLGPLLQPESILKVRT 1254

Query: 300  ILRNEQQVPQVLVKWQHLQVAEATWEDKNEMAIQYPNLNLEDKIALEGEGDVMNNKS 130
            IL+    VPQVLVKWQ +  + ATWEDK E+   YPN NLEDKI   G G ++   S
Sbjct: 1255 ILKGPLLVPQVLVKWQDIDESLATWEDKKEILENYPNFNLEDKIVFNG-GSIVREPS 1310



 Score =  140 bits (353), Expect = 2e-29
 Identities = 86/249 (34%), Positives = 118/249 (47%), Gaps = 2/249 (0%)
 Frame = -1

Query: 4716 MADNTRLKELTTELRRQAETIEKNEAASRARFEELSSMQKASEARFNQLADAFEKLMQQ- 4540
            MAD TR K L T+L    E I        ++  E  +   +S A  + +    E L+Q  
Sbjct: 1    MADGTRFKSLETQLAHLTEIINTQIQTQISQINETVANHSSSIAETSSVLQRMETLLQSL 60

Query: 4539 -TPTVTHGGTNSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIPTMSSTPFQVRHIKLDF 4363
               T+THG                                   P     PFQ R +KL+F
Sbjct: 61   AATTITHGSQP--------------------------------PPRHHHPFQARSVKLEF 88

Query: 4362 PRFNGKNVLDWIFKAEQFFGYYNTPDTERLIIASVHLDQEVVPWFQMVNRSRPFQTWMDF 4183
            PRF+  + L+WIF+A QFF YY+TPD E L                              
Sbjct: 89   PRFDDSHALEWIFRANQFFDYYDTPDPEHL------------------------------ 118

Query: 4182 TRALELDFGPSMYDCPRASLFKLQQSKSVNEYYLEFTALSNRVYGISNDALIDCFVSGLK 4003
            +RA+E +FGPS +D PR +LFKL Q+ SV++YY+ FTAL NR  G++ DAL+DCF+SGL+
Sbjct: 119  SRAIEREFGPSAFDRPRTTLFKLAQTGSVDDYYMVFTALDNRSTGLTPDALLDCFISGLQ 178

Query: 4002 DELRRDVML 3976
             EL+R+  L
Sbjct: 179  KELQREASL 187


>gb|PNX98300.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1139

 Score = 1310 bits (3390), Expect = 0.0
 Identities = 641/1051 (60%), Positives = 781/1051 (74%), Gaps = 3/1051 (0%)
 Frame = -1

Query: 3276 ITVPAYLLPVAGSDVILGAPWLASLGPHVADYATSKLRFYLEGKFVTLQGDTDPKTAIAQ 3097
            IT+P YLLP++G+D++LGA WLA+LGPH+ADY    ++FY++  FVTL GD       AQ
Sbjct: 1    ITLPVYLLPISGADLVLGAAWLATLGPHIADYNALSIKFYIDNHFVTLFGDKPSLPRPAQ 60

Query: 3096 LHQFKRLQHMDAISELFTLQQIEAVAPEDNWKDMPVT---VEPEMATLLYTYREVFQVPK 2926
             H  +RL   DAI ++++LQ        D+  D+ ++   + P+M  LL  + EVF  P 
Sbjct: 61   FHHLRRLHQTDAIEQVYSLQL------HDDSLDVSLSSQSLHPQMKELLLQFPEVFATPS 114

Query: 2925 GLPPPRELSHEILLKEGAPPVKVKPYRYPHSQKEQIEKMVQEMLEEGXXXXXXXXXXXXX 2746
            GLPP R   H I L EG+ PVKVKPYRYPHSQK QIE MVQEMLE+G             
Sbjct: 115  GLPPSRSHDHAIPLLEGSNPVKVKPYRYPHSQKTQIELMVQEMLEQGIIQPSTSPFSSPV 174

Query: 2745 ILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAKFFSKFDLRSGYHQILV 2566
            +LVKKKDGTWR CTDYRALN IT+KDSFP+PTVDELLDEL+GA  FSK DLRSGYHQILV
Sbjct: 175  LLVKKKDGTWRFCTDYRALNTITVKDSFPIPTVDELLDELYGASHFSKLDLRSGYHQILV 234

Query: 2565 KPEDRQKTAFRTHQGHYEWLVMPFGLTNAPATFQRLMNEIFQPFLRKCVLVFFDDILVYS 2386
             P+DR KTAFRTHQG YEWLVMPFGLTNAPATFQ LMN++FQ  LRKCVLVFFDDILVYS
Sbjct: 235  APQDRYKTAFRTHQGLYEWLVMPFGLTNAPATFQSLMNQVFQHLLRKCVLVFFDDILVYS 294

Query: 2385 PSWHTHLQQVECVLQILSQHVLYAKLSKCSFGLTEVEYLGHTVSGSGVSMDRNKVNAVLD 2206
            PSW+ HL  +  VLQ+L  H LYAK+SKCSFG+T+++YLGH VSG+GV MD +KV AV++
Sbjct: 295  PSWNEHLLHLHEVLQLLRDHCLYAKVSKCSFGVTKIDYLGHIVSGNGVEMDDSKVKAVME 354

Query: 2205 WPVPSNLKQLRGFLGLTGYYRRFIKAYASIAGPLTNLLKKDAFQWNENTQLAFEQLKKAI 2026
            WP+P N+KQLRGFLGLTGYYRRFIK YA IA PLT LLKKD FQW+     AF +L++AI
Sbjct: 355  WPLPCNIKQLRGFLGLTGYYRRFIKNYALIALPLTALLKKDQFQWSSEATDAFHKLQQAI 414

Query: 2025 TSAPVLILPDFSQPFVLETDASGTGVGAVLSQGGHPIAFFSKKMAPRMQLQSAYTREFYA 1846
            T APVL LP+F + FVLETDASG+GVGAVLSQ  HPIAFFSKK+ PRMQ QSAY RE YA
Sbjct: 415  TQAPVLALPNFKEDFVLETDASGSGVGAVLSQNHHPIAFFSKKLNPRMQRQSAYVRELYA 474

Query: 1845 ITAALAKFRHYLLGHKFILRTXXXXXXXXXXXXXQTPEQQAWLHKFIGYDFQIEYKPGKD 1666
            IT A+AKFRHYLLGH+FI+RT             QTPEQQ WLHKF+G+DF IEYKPG+D
Sbjct: 475  ITEAMAKFRHYLLGHRFIIRTDQKSLKSLMDQTIQTPEQQNWLHKFLGFDFTIEYKPGRD 534

Query: 1665 NQAADALSRLMTMSWSGPENVFLEELKKEVATNEHLKMIVQQCEQNTVADRNYAVKAGLL 1486
            N AADALSR   M++S  +++ L +++  +  +  L  I   C +    D  Y V+  +L
Sbjct: 535  NIAADALSRSFMMAFSSQQSLLLHQIRLAIQQDHELAAIKALCIEGKAPDPFYTVQHDML 594

Query: 1485 YWKQKLVIPLESKLIQQILKEYHDSPIGGHAGVTRTLARIGAQFYWPKMRQDVKEYVAAC 1306
            +WK +LV+P    ++ QIL EYH SP+GGH+GV RT ARI  QF+WP M +D+ ++V  C
Sbjct: 595  FWKNRLVVPKSPHIVNQILLEYHASPVGGHSGVQRTKARICQQFFWPHMSKDITKFVTEC 654

Query: 1305 IVCQQAKSATTAYAGLLEPLPIPNQVWDDVTMDFITGLPPSHGYTVIMVVVDRLTKFAHF 1126
            + CQQAKS+T   AGLL+PLPIP Q+W+D+ MDFITGLPPS+G+TVI VVVDRL+K+ HF
Sbjct: 655  LTCQQAKSSTALPAGLLQPLPIPLQIWEDIAMDFITGLPPSNGFTVIFVVVDRLSKYGHF 714

Query: 1125 IPMKTDYSSKSVAEAFMHSVVRLHGMPKSIISDRDRVFTSKFWQNLFELQGTTLAMSSAY 946
             P+K+D+ +  VA AF +++V+LHG+PKSI+SDRD+VFTS+FWQ LF L GTTLAMS+AY
Sbjct: 715  TPLKSDFDAPKVAAAFFNNIVKLHGIPKSIVSDRDKVFTSQFWQQLFRLSGTTLAMSTAY 774

Query: 945  HPQTDGQSEAVNKCLEMYLRCFTFNNPKSWYKALCWAELWYNTSHHTSAGMSPFKALYGR 766
            HPQTDGQSEA+NKCLEMYLRCFT  NPKSW + L WAE WYNT+   S  M+PFKA+YGR
Sbjct: 775  HPQTDGQSEALNKCLEMYLRCFTGTNPKSWARLLPWAEYWYNTAFQNSIAMTPFKAVYGR 834

Query: 765  EPPMLTRYAANSSDPVELQQQLLDRDAVITELKRNLARAQQIMKNNADKKRRDVVFEVGD 586
            +PP L RY   S+DP  LQ+ L++RD V+ +LK NL  AQ  MK  ADKKRR + F+VGD
Sbjct: 835  DPPSLIRYVPQSNDPPNLQELLIERDVVLQQLKSNLLTAQGFMKKFADKKRRILEFQVGD 894

Query: 585  QVLVKLQPYRQTSVALRKNQKLGMRYFGPFTILAKIGKVAYKLQLPDTAKIHSVFHVSQL 406
             VLVKLQPYRQ SV LRKNQKLG+RYFGPFT+LAK+G VAY+LQLP   KIH VFHVS L
Sbjct: 895  SVLVKLQPYRQHSVVLRKNQKLGLRYFGPFTVLAKVGPVAYRLQLPPGTKIHPVFHVSLL 954

Query: 405  KLFKGTMTEPYIPLPLTTVEEGPILEPEGILKTRTILRNEQQVPQVLVKWQHLQVAEATW 226
            K  KG     Y+PLPL     GP+L P  +L+TR +  N Q + Q L++W  L  AEATW
Sbjct: 955  KPCKGEHDNTYLPLPLLQHAHGPLLTPLRVLQTRMVPSNGQLIAQALIQWDGLTEAEATW 1014

Query: 225  EDKNEMAIQYPNLNLEDKIALEGEGDVMNNK 133
            ED   +   YP+LNLEDK+   G G+V  +K
Sbjct: 1015 EDCLTLKKNYPSLNLEDKVVFNGGGNVTYDK 1045


>gb|PNX73110.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 937

 Score = 1301 bits (3368), Expect = 0.0
 Identities = 620/937 (66%), Positives = 756/937 (80%)
 Frame = -1

Query: 2964 LLYTYREVFQVPKGLPPPRELSHEILLKEGAPPVKVKPYRYPHSQKEQIEKMVQEMLEEG 2785
            LL+TY+++F+ P  LPP R  +H I L +GA PVKVKPYRYPHSQK QIE M+QEML++G
Sbjct: 2    LLHTYKDLFKAPVALPPNRSHNHSIPLIDGANPVKVKPYRYPHSQKAQIEHMIQEMLQQG 61

Query: 2784 XXXXXXXXXXXXXILVKKKDGTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAKFFS 2605
                         ILVKKKDGTWR CTDYRALNAIT+KD FP+PTVDELLDEL GAK+FS
Sbjct: 62   IIQTSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDCFPIPTVDELLDELFGAKYFS 121

Query: 2604 KFDLRSGYHQILVKPEDRQKTAFRTHQGHYEWLVMPFGLTNAPATFQRLMNEIFQPFLRK 2425
            K DLRSGYHQIL++PEDR KTAFRTHQGHYEWLVMPFGLTNAPATFQ LMN IFQ  LRK
Sbjct: 122  KLDLRSGYHQILLQPEDRHKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALRK 181

Query: 2424 CVLVFFDDILVYSPSWHTHLQQVECVLQILSQHVLYAKLSKCSFGLTEVEYLGHTVSGSG 2245
             VLVFFDDIL+YS +W  HL+ ++ VL+IL ++ L+ KLSKCSFG+ E+EYLGH V+G G
Sbjct: 182  YVLVFFDDILIYSRTWQDHLKHLDAVLKILQENTLFVKLSKCSFGVLEIEYLGHMVTGQG 241

Query: 2244 VSMDRNKVNAVLDWPVPSNLKQLRGFLGLTGYYRRFIKAYASIAGPLTNLLKKDAFQWNE 2065
            VSMD++KV AVL+WP P N+KQLRGFLGLTGYYRRFIK+YA IA PLT+LLKK+A+ WN+
Sbjct: 242  VSMDKDKVQAVLNWPTPKNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYAWND 301

Query: 2064 NTQLAFEQLKKAITSAPVLILPDFSQPFVLETDASGTGVGAVLSQGGHPIAFFSKKMAPR 1885
              +LAF+QLK A+T+APVL LP+F QPF+LETDASG G+GAVL Q GHPIA+FSKK+ PR
Sbjct: 302  LAELAFQQLKSAVTTAPVLALPNFHQPFILETDASGVGIGAVLHQEGHPIAYFSKKLVPR 361

Query: 1884 MQLQSAYTREFYAITAALAKFRHYLLGHKFILRTXXXXXXXXXXXXXQTPEQQAWLHKFI 1705
             Q +SAY RE  AI  A+AKFRHYLLGHKFI+RT             QTPEQQ WLHKF+
Sbjct: 362  NQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRSLMEQSLQTPEQQEWLHKFL 421

Query: 1704 GYDFQIEYKPGKDNQAADALSRLMTMSWSGPENVFLEELKKEVATNEHLKMIVQQCEQNT 1525
            GYDF IEYKPGK+N AADALSRLMT++WS P+  F+E++K  +  +  +  I+ +C    
Sbjct: 422  GYDFTIEYKPGKENMAADALSRLMTLAWSEPQCQFIEQVKLALQNDNQMMEIMLKCASGK 481

Query: 1524 VADRNYAVKAGLLYWKQKLVIPLESKLIQQILKEYHDSPIGGHAGVTRTLARIGAQFYWP 1345
             A   Y ++ GLLYWKQ+LVIP +++L+ ++L E+H SPIGGHAG+TRT+ARI +QFYWP
Sbjct: 482  -APIQYTMREGLLYWKQRLVIPKQNELLHKVLYEFHTSPIGGHAGITRTMARIKSQFYWP 540

Query: 1344 KMRQDVKEYVAACIVCQQAKSATTAYAGLLEPLPIPNQVWDDVTMDFITGLPPSHGYTVI 1165
             M++D+ EYV  C+VCQQAK+  T+ AGLL+PLPIP+QVW+D+ MDFITGLP S+GYT I
Sbjct: 541  DMKKDILEYVQNCVVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSYGYTTI 600

Query: 1164 MVVVDRLTKFAHFIPMKTDYSSKSVAEAFMHSVVRLHGMPKSIISDRDRVFTSKFWQNLF 985
            MVVVDRLTK+AHFIPM+TDY+S+SVAEAFMH++V+LHGMPKSI+SDRD+VFTS FWQ LF
Sbjct: 601  MVVVDRLTKYAHFIPMRTDYTSRSVAEAFMHNIVKLHGMPKSIVSDRDKVFTSAFWQQLF 660

Query: 984  ELQGTTLAMSSAYHPQTDGQSEAVNKCLEMYLRCFTFNNPKSWYKALCWAELWYNTSHHT 805
            +LQGT+LAMSSAYHPQ+DGQ+E +NK LE++LRCF+F+NPKSWYK L WAE WYNT+  T
Sbjct: 661  KLQGTSLAMSSAYHPQSDGQTEVLNKGLELFLRCFSFHNPKSWYKVLSWAEYWYNTAFQT 720

Query: 804  SAGMSPFKALYGREPPMLTRYAANSSDPVELQQQLLDRDAVITELKRNLARAQQIMKNNA 625
            S GM+PFKALYGR+PP LT+Y A  +D   LQ++L++RD ++ +LK NL RAQQ MK  A
Sbjct: 721  SIGMTPFKALYGRDPPYLTKYEAQVTDSPALQEELMERDKILQQLKINLERAQQYMKKQA 780

Query: 624  DKKRRDVVFEVGDQVLVKLQPYRQTSVALRKNQKLGMRYFGPFTILAKIGKVAYKLQLPD 445
            DK R +V  +VGD VLVKLQPYRQ SV+LRKNQKLGMRYFGPF I+A++G VAYKL+LPD
Sbjct: 781  DKHRSEVNLQVGDLVLVKLQPYRQQSVSLRKNQKLGMRYFGPFEIIARVGNVAYKLKLPD 840

Query: 444  TAKIHSVFHVSQLKLFKGTMTEPYIPLPLTTVEEGPILEPEGILKTRTILRNEQQVPQVL 265
             AKIH VFHVSQLK FKG   + Y+PLPLT  E GPI++P   L+ RTI+R  Q+V Q+L
Sbjct: 841  NAKIHPVFHVSQLKPFKGIAQDQYLPLPLTMSETGPIIQPIAALEARTIMRGMQKVHQIL 900

Query: 264  VKWQHLQVAEATWEDKNEMAIQYPNLNLEDKIALEGE 154
            V+W  + V EATWED + +  ++P LNLEDKIA  GE
Sbjct: 901  VQWDQMPVTEATWEDLDVLQDKFPTLNLEDKIAFNGE 937