BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus24_contig00005961
         (2019 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX92398.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   979   0.0  
gb|KYP39589.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]   924   0.0  
gb|KYP39590.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]   922   0.0  
gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   906   0.0  
gb|PNX78745.1| retrotransposon-related protein, partial [Trifoli...   886   0.0  
gb|PNX73402.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   886   0.0  
ref|XP_014627597.1| PREDICTED: uncharacterized protein LOC100803...   897   0.0  
gb|PNY16671.1| retrotransposon-related protein, partial [Trifoli...   884   0.0  
gb|PNX94483.1| retrotransposon-related protein, partial [Trifoli...   881   0.0  
dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subt...   889   0.0  
gb|PNX99332.1| retrotransposon-related protein [Trifolium pratense]   872   0.0  
gb|PNY16560.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   886   0.0  
gb|PNX96484.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   875   0.0  
dbj|GAU11620.1| hypothetical protein TSUD_346120 [Trifolium subt...   882   0.0  
gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   882   0.0  
dbj|GAU23504.1| hypothetical protein TSUD_39830 [Trifolium subte...   865   0.0  
gb|AAO23078.1| polyprotein [Glycine max]                              878   0.0  
gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   873   0.0  
dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subt...   872   0.0  
dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subt...   865   0.0  

>gb|PNX92398.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1571

 Score =  979 bits (2532), Expect = 0.0
 Identities = 481/671 (71%), Positives = 558/671 (83%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            H+CPNKH LL+QV+D  T PE E   P+I+    E+  E       HHLSFN  KG ++ 
Sbjct: 352  HRCPNKHYLLLQVDDSDT-PEQETDPPDIDPLVEELEAE-------HHLSFNALKGVYSA 403

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G++RF+G I GV+V VLLDSGSSDNF+QPRIA CLK PIQ   +FQVLVGNG +LT+ G 
Sbjct: 404  GTLRFQGQIQGVQVQVLLDSGSSDNFLQPRIAQCLKLPIQEAPQFQVLVGNGSTLTASGL 463

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            I +LP++IQGH L LPVYLLPI G DLVLGAPWLKTLG HIADYD LSI+FYL +KF+TL
Sbjct: 464  IPDLPVTIQGHTLQLPVYLLPITGADLVLGAPWLKTLGPHIADYDALSIKFYLNNKFITL 523

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPIATDSVSIDPAMEALLNAYA 1296
             G +   P  A++HHIRRL+NT +ID  +TLQF++ +    A    ++   + ALL+ Y 
Sbjct: 524  RGDRFMDPGQAEFHHIRRLNNTHSIDLSYTLQFNSIATPSSAVALETLPAELAALLHQYW 583

Query: 1295 DVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGIIQPST 1116
             VF EP+ LPPPR QDH IPL++GS PVKV+PYRYPHSQKA+IEKMV +ML QGIIQPST
Sbjct: 584  QVFEEPTSLPPPRAQDHYIPLIDGSNPVKVKPYRYPHSQKAEIEKMVADMLKQGIIQPST 643

Query: 1115 SPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSKLDLRS 936
            SPFSSPVLLVKKKDG+WRFCTDYRALNAIT+KDSFPIPTVDELLDELFGA YFSKLDLRS
Sbjct: 644  SPFSSPVLLVKKKDGSWRFCTDYRALNAITVKDSFPIPTVDELLDELFGASYFSKLDLRS 703

Query: 935  GYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKSVLVFF 756
            GYHQILV  EDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMN+VF+DQLRK VLVFF
Sbjct: 704  GYHQILVNPEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNSVFRDQLRKFVLVFF 763

Query: 755  DDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGVEMDNS 576
            DDILVYS +W+ HL HLE VL +L+++ L+AK SKC FGL  VDYLGHTIS QGVEMD S
Sbjct: 764  DDILVYSPSWSTHLEHLEVVLRVLQENQLFAKFSKCCFGLTSVDYLGHTISNQGVEMDKS 823

Query: 575  KVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQATMAF 396
            K+QAV+EW +P+S+KQLRGFLGL+GYYRRF++ YA++ASPLT LLKKDAF+W   AT AF
Sbjct: 824  KIQAVMEWKIPSSLKQLRGFLGLSGYYRRFIRNYAAIASPLTELLKKDAFQWTSTATEAF 883

Query: 395  NALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRMQRQSA 216
            N LK AITQAPVLSLPDF   F LETDASGSG+GAVLSQ +HPIAYFSKKL PRMQ+QSA
Sbjct: 884  NKLKQAITQAPVLSLPDFRLPFTLETDASGSGVGAVLSQARHPIAYFSKKLCPRMQKQSA 943

Query: 215  YVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLGFDFTI 36
            YVRELYA+T A+A+FRHYL+GH+F+I+TDQ+SLK+L DQ IQTPEQQ WLHKFLG+DFTI
Sbjct: 944  YVRELYAITEALAKFRHYLIGHKFVIKTDQRSLKSLTDQSIQTPEQQHWLHKFLGYDFTI 1003

Query: 35   EYKPGRDNVAA 3
            EYKPG DN+AA
Sbjct: 1004 EYKPGVDNIAA 1014


>gb|KYP39589.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
          Length = 1510

 Score =  924 bits (2387), Expect = 0.0
 Identities = 452/673 (67%), Positives = 552/673 (82%), Gaps = 2/673 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            H+CPNK  LL+QVEDE    E+E+ T N++S + E       + +EHHLSFN  KG   V
Sbjct: 290  HRCPNKQYLLLQVEDEE---ELEETT-NVDSTALE-------DELEHHLSFNALKGVATV 338

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G+MRF G I G EV++LLDSGSSDNF+QP++AH LK PI+P +  QV+VGNG SL++EG 
Sbjct: 339  GTMRFTGSIAGKEVHILLDSGSSDNFLQPKLAHYLKLPIEPAAGLQVMVGNGSSLSTEGK 398

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            I  L + +QG VL LPVYLL ++G DLVLGA WL TLG HIADY  L+I+FY   K VTL
Sbjct: 399  ILNLQVQVQGQVLQLPVYLLSVSGADLVLGAAWLATLGPHIADYGSLTIKFYKDKKLVTL 458

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPIATDSV--SIDPAMEALLNA 1302
             G +    A++Q+HH++RL++T  I E++TLQ  +S  +      +  ++DP +  LL+ 
Sbjct: 459  QGEKSRPAAMSQFHHLKRLNHTQGIAEVYTLQLLSSFVETDQWKDIPDNVDPEIALLLHY 518

Query: 1301 YADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGIIQP 1122
            Y  +FA+P+ LPPPR Q+H IPLL+GS PVKVRPY+YPHSQK QIE M+ EML  GII P
Sbjct: 519  YRQIFAKPTGLPPPRSQNHRIPLLQGSGPVKVRPYKYPHSQKQQIELMIKEMLEDGIIAP 578

Query: 1121 STSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSKLDL 942
            S+SPFSSP++LVKKKDG+WRFCTDYRALNAIT+KDSFPIPTV+ELLDELFGA YFSKLDL
Sbjct: 579  SSSPFSSPIILVKKKDGSWRFCTDYRALNAITVKDSFPIPTVEELLDELFGAKYFSKLDL 638

Query: 941  RSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKSVLV 762
            R+GYHQILV++EDR+KTAFRTHQG YEWLVMPFGL+NAPA+FQ+LMN++F+  LRKSVLV
Sbjct: 639  RAGYHQILVQEEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQNLMNDIFQGLLRKSVLV 698

Query: 761  FFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGVEMD 582
            FFDDILVYSS+W  HL HL++VL++L +H LYAK SKCSFGL +V+YLGH +SG GV M+
Sbjct: 699  FFDDILVYSSSWFLHLQHLQQVLDILAKHELYAKMSKCSFGLEQVEYLGHVVSGDGVSME 758

Query: 581  NSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQATM 402
             SKVQAV++WP+P +IKQLRGFLGLTGYYRRF+QGYAS+A+PLT LLKKD FKW ++A  
Sbjct: 759  TSKVQAVIDWPVPKTIKQLRGFLGLTGYYRRFIQGYASIANPLTDLLKKDNFKWSNEADA 818

Query: 401  AFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRMQRQ 222
            AF ALK AIT APVLSLPDFS+ F+LETDASGSGIGAVLSQ+KHPIA+FSKKLS RM +Q
Sbjct: 819  AFIALKQAITTAPVLSLPDFSQPFVLETDASGSGIGAVLSQNKHPIAFFSKKLSNRMTKQ 878

Query: 221  SAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLGFDF 42
            SAY RE YA+T A+A+FRHYLLGHRFIIRTDQKSLK+L+DQ +QTPEQQ WLHKFLG+DF
Sbjct: 879  SAYTREFYAITEAIAKFRHYLLGHRFIIRTDQKSLKSLLDQTLQTPEQQAWLHKFLGYDF 938

Query: 41   TIEYKPGRDNVAA 3
            +IEYKPG +N+AA
Sbjct: 939  SIEYKPGTENLAA 951


>gb|KYP39590.1| Transposon Ty3-G Gag-Pol polyprotein [Cajanus cajan]
          Length = 1292

 Score =  922 bits (2384), Expect = 0.0
 Identities = 451/673 (67%), Positives = 552/673 (82%), Gaps = 2/673 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            H+CPNK  LL+QVEDE    E+E+ T N++S + E       + +EHHLSFN  KG   V
Sbjct: 290  HRCPNKQYLLLQVEDEE---ELEETT-NVDSTALE-------DELEHHLSFNALKGVATV 338

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G+MRF G I G EV++LLDSGSSDNF+QP++AH LK PI+P +  QV+VGNG SL++EG 
Sbjct: 339  GTMRFTGSIAGKEVHILLDSGSSDNFLQPKLAHYLKLPIEPAAGLQVMVGNGSSLSTEGK 398

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            I  L + +QG VL LPVYLL ++G DLVLGA WL TLG HIADY  L+I+FY   K VTL
Sbjct: 399  ILNLQVQVQGQVLQLPVYLLSVSGADLVLGAAWLATLGPHIADYGSLTIKFYKDKKLVTL 458

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPIATDSV--SIDPAMEALLNA 1302
             G +    A++Q+HH++RL++T  I E++TLQ  +S  +      +  ++DP +  LL+ 
Sbjct: 459  QGEKSRPAAMSQFHHLKRLNHTQGIAEVYTLQLLSSFVETDQWKDIPDNVDPEIALLLHY 518

Query: 1301 YADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGIIQP 1122
            Y  +FA+P+ LPPPR Q+H IPLL+GS PVKVRPY+YPHSQK QIE M+ EML  GII P
Sbjct: 519  YRQIFAKPTGLPPPRSQNHRIPLLQGSGPVKVRPYKYPHSQKQQIELMIKEMLEDGIIAP 578

Query: 1121 STSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSKLDL 942
            S+SPFSSP++LVKKKDG+WRFCTDYRALNAIT+KDSFPIPTV++LLDELFGA YFSKLDL
Sbjct: 579  SSSPFSSPIILVKKKDGSWRFCTDYRALNAITVKDSFPIPTVEDLLDELFGAKYFSKLDL 638

Query: 941  RSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKSVLV 762
            R+GYHQILV++EDR+KTAFRTHQG YEWLVMPFGL+NAPA+FQ+LMN++F+  LRKSVLV
Sbjct: 639  RAGYHQILVQEEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQNLMNDIFQGLLRKSVLV 698

Query: 761  FFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGVEMD 582
            FFDDILVYSS+W  HL HL++VL++L +H LYAK SKCSFGL +V+YLGH +SG GV M+
Sbjct: 699  FFDDILVYSSSWFLHLQHLQQVLDILAKHELYAKMSKCSFGLEQVEYLGHVVSGDGVSME 758

Query: 581  NSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQATM 402
             SKVQAV++WP+P +IKQLRGFLGLTGYYRRF+QGYAS+A+PLT LLKKD FKW ++A  
Sbjct: 759  TSKVQAVIDWPVPKTIKQLRGFLGLTGYYRRFIQGYASIANPLTDLLKKDNFKWSNEADA 818

Query: 401  AFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRMQRQ 222
            AF ALK AIT APVLSLPDFS+ F+LETDASGSGIGAVLSQ+KHPIA+FSKKLS RM +Q
Sbjct: 819  AFIALKQAITTAPVLSLPDFSQPFVLETDASGSGIGAVLSQNKHPIAFFSKKLSNRMTKQ 878

Query: 221  SAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLGFDF 42
            SAY RE YA+T A+A+FRHYLLGHRFIIRTDQKSLK+L+DQ +QTPEQQ WLHKFLG+DF
Sbjct: 879  SAYTREFYAITEAIAKFRHYLLGHRFIIRTDQKSLKSLLDQTLQTPEQQAWLHKFLGYDF 938

Query: 41   TIEYKPGRDNVAA 3
            +IEYKPG +N+AA
Sbjct: 939  SIEYKPGTENLAA 951


>gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1240

 Score =  906 bits (2341), Expect = 0.0
 Identities = 435/673 (64%), Positives = 537/673 (79%), Gaps = 2/673 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            HKCPN+ L+L+Q +D     EI+    + +S     T   T    EHHLSFN  KGT  +
Sbjct: 38   HKCPNRQLMLLQYDDNDENSEIDSAIQSPDS----TTDSPTTNIPEHHLSFNAMKGTSHM 93

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G +RF G I  ++V +L+D GSSDNF+QPRIA CLK P++P S F+VLVGNG  +T+EG 
Sbjct: 94   GILRFTGSIEQIKVQILIDGGSSDNFLQPRIAKCLKLPVEPASTFRVLVGNGEIMTAEGM 153

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            I++LPL IQGH L +PVYLLP+AG D++LGA WL TLG H+ADY  L+++F+L+ KFVTL
Sbjct: 154  INQLPLDIQGHKLEIPVYLLPVAGADVILGASWLATLGPHVADYASLTLKFFLEGKFVTL 213

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSH-KPIATD-SVSIDPAMEALLNA 1302
             G  +  P+ AQ+HH++RL NTDAIDE FT+Q+  S+    I  D   +I+P +  LL+ 
Sbjct: 214  VGESEVRPSAAQFHHLKRLQNTDAIDECFTVQWLKSTEITDIFKDFPTNIEPEIAILLHT 273

Query: 1301 YADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGIIQP 1122
            Y D+F  PS LPP R  +H IPL+EG+ PVKV+PYRYPHSQK QIE MV +ML QGIIQP
Sbjct: 274  YKDLFNTPSALPPSRSHNHTIPLIEGANPVKVKPYRYPHSQKEQIETMVQDMLQQGIIQP 333

Query: 1121 STSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSKLDL 942
            STSPFSSP++LVKKKDGTWRFCTDYRALNA+TIKDSFPIPTVDELLDELFGA YFSKLDL
Sbjct: 334  STSPFSSPIVLVKKKDGTWRFCTDYRALNALTIKDSFPIPTVDELLDELFGARYFSKLDL 393

Query: 941  RSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKSVLV 762
            RSGYHQIL+  +DR+KTAFRTH G YEWLVMPFGL+NAPA+FQSLMN++F+  LRK VLV
Sbjct: 394  RSGYHQILLHPQDRYKTAFRTHHGHYEWLVMPFGLTNAPATFQSLMNHIFQHVLRKYVLV 453

Query: 761  FFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGVEMD 582
            FFDDIL+YSS+W  HL HL+ VL +L+ + L+ K SKCSFG++ ++YLGH ++GQGV MD
Sbjct: 454  FFDDILIYSSSWQDHLTHLDAVLKVLQDNSLFVKLSKCSFGVSEIEYLGHMVTGQGVSMD 513

Query: 581  NSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQATM 402
              KVQAVL W  P ++KQLRGFLGLTGYYRRF++ YA +A+PLT LLKK++++W+DQA +
Sbjct: 514  RDKVQAVLNWSTPTNVKQLRGFLGLTGYYRRFIKSYAKIAAPLTDLLKKESYRWNDQADI 573

Query: 401  AFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRMQRQ 222
            AF  LK A+T APVL+LP+F K FILETDASG GIGAVL QD HPIAYFSKKL PR Q++
Sbjct: 574  AFQQLKEAVTSAPVLALPNFHKPFILETDASGVGIGAVLHQDNHPIAYFSKKLVPRNQKK 633

Query: 221  SAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLGFDF 42
            SAY RE+ A+  A+A+FRHYLLGHRFIIRTDQKSL++L+DQ +QTPEQQ WLHKFLG+DF
Sbjct: 634  SAYFREMLAIAEAIAKFRHYLLGHRFIIRTDQKSLRSLMDQSLQTPEQQEWLHKFLGYDF 693

Query: 41   TIEYKPGRDNVAA 3
             IEYKPG++N+AA
Sbjct: 694  VIEYKPGKENLAA 706


>gb|PNX78745.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 711

 Score =  886 bits (2290), Expect = 0.0
 Identities = 428/673 (63%), Positives = 527/673 (78%), Gaps = 2/673 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            HKCPN+ L+L+Q ED+    E +Q    +   +  +T        EHHLS N  KGT  +
Sbjct: 19   HKCPNRQLMLLQCEDD----EEDQVLDGLPQSAEIITNTLDTTQTEHHLSLNAMKGTSNM 74

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G +RF G I  + V VL+D GSSDNF+QPRIA  LK PI+   +F VLVGNG ++T+EG 
Sbjct: 75   GVLRFTGSIEHLGVQVLIDGGSSDNFLQPRIAKILKLPIELGPQFNVLVGNGETMTAEGI 134

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            + +LPL IQGH L +PV+LLP+AG D++LGA WL TLG H+ADY  L ++F+LKDKFVTL
Sbjct: 135  VQKLPLDIQGHKLEVPVFLLPVAGADVILGASWLATLGPHVADYSSLKLKFFLKDKFVTL 194

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPIATDSV--SIDPAMEALLNA 1302
             G     P  AQ+HH +RL NTD+I E FT+Q+  SS        +  +I+P +  LL  
Sbjct: 195  SGEAMPRPIPAQFHHFKRLVNTDSIAECFTVQWLKSSESDDVFKDLPTNIEPEIAMLLYT 254

Query: 1301 YADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGIIQP 1122
            Y  +F  P+ LPP R  +H IPL+EG+ PVKV+PYRYPHSQKAQIE M+ +ML QGIIQ 
Sbjct: 255  YKSLFQPPTALPPSRAHNHTIPLMEGTNPVKVKPYRYPHSQKAQIEIMIQDMLQQGIIQT 314

Query: 1121 STSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSKLDL 942
            STS FSSP++LVKKKDGTWRFCTDYRALNAIT+KD FPIPTVDELLDELFGA +FSKLDL
Sbjct: 315  STSSFSSPIVLVKKKDGTWRFCTDYRALNAITVKDCFPIPTVDELLDELFGAKFFSKLDL 374

Query: 941  RSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKSVLV 762
            RSGYHQIL++ EDRHKTAFRTHQG YEWLVMPFGL+NAPA+FQSLMN++F+  LRK VLV
Sbjct: 375  RSGYHQILLQPEDRHKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALRKYVLV 434

Query: 761  FFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGVEMD 582
            FFDDIL+YSS W  HL HL+ VL +L+++ L+ K SKCSFG+  ++YLGH ++GQGV MD
Sbjct: 435  FFDDILIYSSNWQDHLKHLDAVLQVLQENTLFVKLSKCSFGVLEIEYLGHMVTGQGVSMD 494

Query: 581  NSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQATM 402
              KVQAVLEWP+P ++KQLRGFLGLTGYYRRF++ YA +ASPLT LLKK+A++W+  A M
Sbjct: 495  KDKVQAVLEWPIPGNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYEWNVNAEM 554

Query: 401  AFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRMQRQ 222
            AF  LK AIT APVL+LPDF K F+LETDASG GIGAVL Q+ HPIAYFSKKL PR Q++
Sbjct: 555  AFQQLKAAITSAPVLALPDFQKPFVLETDASGVGIGAVLHQEGHPIAYFSKKLVPRNQKK 614

Query: 221  SAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLGFDF 42
            SAY RE++A+  A+A+FRHYLLGH+FIIRTDQKSL++L+DQ +QTP+QQ WLHKFLG+DF
Sbjct: 615  SAYFREMFAIVKAIAKFRHYLLGHKFIIRTDQKSLRSLMDQSLQTPDQQEWLHKFLGYDF 674

Query: 41   TIEYKPGRDNVAA 3
            TIEYKPG++N+AA
Sbjct: 675  TIEYKPGKENMAA 687


>gb|PNX73402.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 895

 Score =  886 bits (2290), Expect = 0.0
 Identities = 428/673 (63%), Positives = 527/673 (78%), Gaps = 2/673 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            HKCPN+ L+L+Q ED+    E +Q    +   +  +T        EHHLS N  KGT  +
Sbjct: 19   HKCPNRQLMLLQCEDD----EEDQVLDGLPQSAEIITNTLDTTQTEHHLSLNAMKGTSNM 74

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G +RF G I  + V VL+D GSSDNF+QPRIA  LK PI+   +F VLVGNG ++T+EG 
Sbjct: 75   GVLRFTGSIEHLGVQVLIDGGSSDNFLQPRIAKILKLPIELGPQFNVLVGNGETMTAEGI 134

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            + +LPL IQGH L +PV+LLP+AG D++LGA WL TLG H+ADY  L ++F+LKDKFVTL
Sbjct: 135  VQKLPLDIQGHKLEVPVFLLPVAGADVILGASWLATLGPHVADYSSLKLKFFLKDKFVTL 194

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPIATDSV--SIDPAMEALLNA 1302
             G     P  AQ+HH +RL NTD+I E FT+Q+  SS        +  +I+P +  LL  
Sbjct: 195  SGEAMPRPIPAQFHHFKRLVNTDSIAECFTVQWLKSSESDDVFKDLPTNIEPEIAMLLYT 254

Query: 1301 YADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGIIQP 1122
            Y  +F  P+ LPP R  +H IPL+EG+ PVKV+PYRYPHSQKAQIE M+ +ML QGIIQ 
Sbjct: 255  YKSLFQPPTALPPSRAHNHTIPLMEGTNPVKVKPYRYPHSQKAQIEIMIQDMLQQGIIQT 314

Query: 1121 STSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSKLDL 942
            STS FSSP++LVKKKDGTWRFCTDYRALNAIT+KD FPIPTVDELLDELFGA +FSKLDL
Sbjct: 315  STSSFSSPIVLVKKKDGTWRFCTDYRALNAITVKDCFPIPTVDELLDELFGAKFFSKLDL 374

Query: 941  RSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKSVLV 762
            RSGYHQIL++ EDRHKTAFRTHQG YEWLVMPFGL+NAPA+FQSLMN++F+  LRK VLV
Sbjct: 375  RSGYHQILLQPEDRHKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALRKYVLV 434

Query: 761  FFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGVEMD 582
            FFDDIL+YSS W  HL HL+ VL +L+++ L+ K SKCSFG+  ++YLGH ++GQGV MD
Sbjct: 435  FFDDILIYSSNWQDHLKHLDAVLQVLQENTLFVKLSKCSFGVLEIEYLGHMVTGQGVSMD 494

Query: 581  NSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQATM 402
              KVQAVLEWP+P ++KQLRGFLGLTGYYRRF++ YA +ASPLT LLKK+A++W+  A M
Sbjct: 495  KDKVQAVLEWPIPGNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYEWNVNAEM 554

Query: 401  AFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRMQRQ 222
            AF  LK AIT APVL+LPDF K F+LETDASG GIGAVL Q+ HPIAYFSKKL PR Q++
Sbjct: 555  AFQQLKAAITSAPVLALPDFQKPFVLETDASGVGIGAVLHQEGHPIAYFSKKLVPRNQKK 614

Query: 221  SAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLGFDF 42
            SAY RE++A+  A+A+FRHYLLGH+FIIRTDQKSL++L+DQ +QTP+QQ WLHKFLG+DF
Sbjct: 615  SAYFREMFAIVEAIAKFRHYLLGHKFIIRTDQKSLRSLMDQSLQTPDQQEWLHKFLGYDF 674

Query: 41   TIEYKPGRDNVAA 3
            TIEYKPG++N+AA
Sbjct: 675  TIEYKPGKENMAA 687


>ref|XP_014627597.1| PREDICTED: uncharacterized protein LOC100803389 [Glycine max]
          Length = 1253

 Score =  897 bits (2318), Expect = 0.0
 Identities = 437/676 (64%), Positives = 534/676 (78%), Gaps = 5/676 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            H+CPN+  LL+Q++++       +P P IE     +        ++HHLS+N  KG+  +
Sbjct: 313  HRCPNRQYLLLQMDEDENVEVQLEPPPRIEETMGNLN-------LDHHLSYNALKGSFGL 365

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G+M+F G ING+ V +LLDSGSSDNF+QPRIA+CLK PI+  S FQVL GNG+SL +EG 
Sbjct: 366  GTMKFSGTINGMVVQILLDSGSSDNFLQPRIANCLKLPIELASNFQVLGGNGNSLIAEGL 425

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            + +L + +QGH L LPVYLLPIAG DLVLGA WL TLG H++DY +L+++FY  ++FVTL
Sbjct: 426  VKQLEVMVQGHSLKLPVYLLPIAGSDLVLGATWLATLGPHVSDYSQLTLKFYKDNQFVTL 485

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPIATDS-----VSIDPAMEAL 1311
            HG Q  LP  A+++ +RR+++T AI E+FTLQ+    H+ +  D        ++P +  L
Sbjct: 486  HGDQPKLPGPAEFNQLRRMNHTHAIAEVFTLQY---KHQDVPEDKWLELPKDMEPDLVML 542

Query: 1310 LNAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGI 1131
            L+ Y  +F  P+ LPP R Q+H IPL++ + PVKVRPYRYPHSQK QIE MV EML   I
Sbjct: 543  LHNYRSIFVVPNELPPSRTQNHTIPLVKDAKPVKVRPYRYPHSQKQQIETMVQEMLAASI 602

Query: 1130 IQPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSK 951
            I P+TSPF SP++LVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDEL+DEL+G++YFSK
Sbjct: 603  ITPNTSPFYSPIILVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELIDELYGSNYFSK 662

Query: 950  LDLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKS 771
            LDLRSGYHQILV  EDRHKTAFRTHQG YEWLV+PFGL+NAPA+FQSLMN+VFKD LRK 
Sbjct: 663  LDLRSGYHQILVAAEDRHKTAFRTHQGHYEWLVLPFGLTNAPATFQSLMNDVFKDFLRKF 722

Query: 770  VLVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGV 591
            VLVFFDDILVYSSTW  HL HLE VL LL++H LYAK SKCSFGL +VDYLGHT+SGQGV
Sbjct: 723  VLVFFDDILVYSSTWKEHLLHLELVLQLLQKHQLYAKLSKCSFGLPKVDYLGHTVSGQGV 782

Query: 590  EMDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQ 411
             MD  KVQAVL+WP P +IKQLRGFLGLTGYYR+F++ YA +++PLT LLKKD F W   
Sbjct: 783  SMDKDKVQAVLDWPAPINIKQLRGFLGLTGYYRKFIKSYAVISAPLTDLLKKDKFMWGVD 842

Query: 410  ATMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRM 231
            A  AFN LK  ITQAPVL+LPDFSK F LETDASG G+G VLSQ +HPIAYFSKKL+ RM
Sbjct: 843  ADEAFNKLKNVITQAPVLALPDFSKPFTLETDASGIGVGVVLSQMQHPIAYFSKKLNVRM 902

Query: 230  QRQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLG 51
            Q+QSAY RE +A+T A+A+FRHYLLGH+F+I+TDQKSLK+L DQ + TPEQQ WLHK +G
Sbjct: 903  QKQSAYAREFFAITEAIAKFRHYLLGHKFVIKTDQKSLKSLTDQVVHTPEQQNWLHKLIG 962

Query: 50   FDFTIEYKPGRDNVAA 3
            +DFTIEYK G++NVAA
Sbjct: 963  YDFTIEYKSGKENVAA 978


>gb|PNY16671.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1284

 Score =  884 bits (2285), Expect = 0.0
 Identities = 430/673 (63%), Positives = 526/673 (78%), Gaps = 2/673 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            HKCPN+ L+L+Q +D       E  T   ES  +      T    EHHLS N  KGT  +
Sbjct: 298  HKCPNRQLMLIQCDDSDADQMFEPMTQPEESTINSSITNQT----EHHLSLNAMKGTSNM 353

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G +RF G I  ++V VL+D GSSDNF+QPRIA  LK PI+   +F VLVGNG ++T+EG 
Sbjct: 354  GVLRFTGSIEQIKVQVLIDGGSSDNFLQPRIAKFLKLPIESGPQFNVLVGNGETMTAEGI 413

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            I +LPL IQGH L +PV+LLPIAG D++LGA WL TLG H+ADY  L+++F+ KDKF+TL
Sbjct: 414  IQKLPLEIQGHKLDVPVFLLPIAGADVILGASWLATLGPHVADYASLTLKFFWKDKFITL 473

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSH-KPIATD-SVSIDPAMEALLNA 1302
             G     P  AQ+HH +RL+ TD+I E FT+Q+  S+  + I  D   +IDP +  LL+ 
Sbjct: 474  SGEAVPRPIPAQFHHFKRLATTDSISECFTVQWLKSADTEDIFKDLPTNIDPEIAILLHT 533

Query: 1301 YADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGIIQP 1122
            Y ++F  PS LPP R  +H IPL++GS PVKV+PYRYPHSQKAQIE M+ EML QGIIQP
Sbjct: 534  YKNLFQTPSALPPNRTHNHTIPLIDGSNPVKVKPYRYPHSQKAQIEHMIQEMLQQGIIQP 593

Query: 1121 STSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSKLDL 942
            STSPFSSP++LVKKKDGTWRFCTDYRALNAIT+KD FPIPTVDELLDEL GA YFSKLDL
Sbjct: 594  STSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDCFPIPTVDELLDELCGAKYFSKLDL 653

Query: 941  RSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKSVLV 762
            RSGYHQIL++ EDR+KTAFRTHQG YEWLVMPFGL+NAPA+FQSLMN++F+  LRK VLV
Sbjct: 654  RSGYHQILLQPEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALRKYVLV 713

Query: 761  FFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGVEMD 582
            FFDDILVYSS W  H+ HLE VL +L+ + LY K SKCSFG+  ++YLGH ++GQGV MD
Sbjct: 714  FFDDILVYSSNWHEHIQHLEMVLKVLQDNTLYVKLSKCSFGVMEIEYLGHIVTGQGVSMD 773

Query: 581  NSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQATM 402
              KVQAVL WP+P ++KQLRGFLGLTGYYRRF+Q YA +ASPLT LLKK+ F+W++QA  
Sbjct: 774  KEKVQAVLNWPIPKNVKQLRGFLGLTGYYRRFIQSYAKIASPLTDLLKKEEFRWNEQAEQ 833

Query: 401  AFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRMQRQ 222
            AF  LK A+T APVL+LP+F   FILETDASG GIGAVL Q  HPIAYFSKKL PR Q++
Sbjct: 834  AFQKLKVAMTSAPVLALPNFKLPFILETDASGVGIGAVLQQQGHPIAYFSKKLVPRNQKK 893

Query: 221  SAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLGFDF 42
            SAY RE+ A+  ++A+FRHYL+GH+FIIRTDQKSL++L++Q +QTPEQQ WLH+FLG+DF
Sbjct: 894  SAYFREMLAIAESIAKFRHYLMGHKFIIRTDQKSLRSLMEQSLQTPEQQEWLHRFLGYDF 953

Query: 41   TIEYKPGRDNVAA 3
            TIEYKPG++N+AA
Sbjct: 954  TIEYKPGKENIAA 966


>gb|PNX94483.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1287

 Score =  881 bits (2277), Expect = 0.0
 Identities = 431/675 (63%), Positives = 534/675 (79%), Gaps = 4/675 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAI--EHHLSFNTFKGTH 1842
            HKCPN+ L+L+Q +D      +E P     S SSE+ + +T+E    EHHLSFN  KG  
Sbjct: 311  HKCPNRQLMLLQYDDNEEENVVEIP-----SDSSELAI-NTLETTQPEHHLSFNAMKGNS 364

Query: 1841 AVGSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSE 1662
            ++G +RF G I  ++V +L+D GSSDNF+QPRIA  LK PI+P   F+VLVGNG  +T+E
Sbjct: 365  SMGILRFSGTIEHIQVQILIDGGSSDNFLQPRIARFLKLPIEPGPVFKVLVGNGEIMTAE 424

Query: 1661 GFISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFV 1482
            G I  L L+IQG  L +PV+LLP+AG D++LGA WL TLG H+ADY  L+++F++  KFV
Sbjct: 425  GVIQNLALNIQGTELQVPVFLLPVAGADVILGASWLATLGPHVADYASLTLKFFINGKFV 484

Query: 1481 TLHGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHAS-SHKPIATD-SVSIDPAMEALL 1308
            TL G     PA AQ+HH +RL  TDAI E FT+Q+  S + + I  D   +I+P +  LL
Sbjct: 485  TLQGEATPRPAAAQFHHFKRLHYTDAIAECFTIQWLKSHTDEDIFRDLPTNIEPEIAILL 544

Query: 1307 NAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGII 1128
            + Y ++F  P+ LPP R  +H+IPL+EG  PVKV+PYRYPHSQK QIE MV +ML QGII
Sbjct: 545  HTYKELFKTPNTLPPHRSHNHSIPLIEGHNPVKVKPYRYPHSQKNQIELMVQDMLQQGII 604

Query: 1127 QPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSKL 948
            QPSTSPFSSP++LVKKKDGTWRFCTDYRALNAIT+KDSFPIPTVDELLDELFGA +FSKL
Sbjct: 605  QPSTSPFSSPIVLVKKKDGTWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAXFFSKL 664

Query: 947  DLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKSV 768
            DLRSGYHQIL++ EDR+KTAFRTHQGLYEWLVMPFGL+NAPA+FQ LMN++F+  LRK V
Sbjct: 665  DLRSGYHQILLQPEDRYKTAFRTHQGLYEWLVMPFGLTNAPATFQGLMNHIFQHALRKYV 724

Query: 767  LVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGVE 588
            LVFFDDILVYSSTW  HL+HL+ VL  L  + L+ K SKCSFG++ ++YLGH ++GQGV 
Sbjct: 725  LVFFDDILVYSSTWQDHLSHLDTVLKTLLDNDLFVKLSKCSFGVSEIEYLGHLVTGQGVS 784

Query: 587  MDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQA 408
            MD  K+QAVLEWP+P +IKQLRGFLGLTGYYRRF++ YA +A+PLT LLKK+ + W+ Q 
Sbjct: 785  MDRDKIQAVLEWPIPKNIKQLRGFLGLTGYYRRFIKHYARLAAPLTDLLKKENYNWNAQT 844

Query: 407  TMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRMQ 228
             +AF  LK A+T APVL+LP+F K FILETDASG G+GAVL QD HPIAYFSKKL PR Q
Sbjct: 845  ELAFQELKAAMTSAPVLALPNFQKPFILETDASGVGVGAVLHQDGHPIAYFSKKLVPRNQ 904

Query: 227  RQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLGF 48
            ++SAY RE+ A++ A+A+FRHYLLGHRFIIRTDQKSL++L+DQ +QTPEQQ WLHKFLG+
Sbjct: 905  KKSAYFREMLAISEAIAKFRHYLLGHRFIIRTDQKSLRSLMDQSLQTPEQQQWLHKFLGY 964

Query: 47   DFTIEYKPGRDNVAA 3
            DF IEYKPG++N+AA
Sbjct: 965  DFVIEYKPGKENLAA 979


>dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subterraneum]
          Length = 1556

 Score =  889 bits (2298), Expect = 0.0
 Identities = 434/676 (64%), Positives = 532/676 (78%), Gaps = 6/676 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDE-HTTPEIEQPTPNIESHSSEVTVEDTVEA-IEHHLSFNTFKGTH 1842
            H+CPNKHL L+Q+ED   T+P+ E   PNI +   +    DT +  ++ HLS N   G+ 
Sbjct: 321  HRCPNKHLYLLQLEDPIPTSPDSE---PNIAASEPQSPTSDTPQPELDLHLSLNALNGSR 377

Query: 1841 AVGSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSE 1662
             +G++RF G I G  + +L+D GSSDNF QPR+AH L+ P++P   F VLVGNG S+ +E
Sbjct: 378  KLGTLRFTGSIAGTTIQILVDGGSSDNFFQPRLAHFLQLPVEPAPGFNVLVGNGQSMMAE 437

Query: 1661 GFISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFV 1482
            G IS+L ++IQG  ++LPV+LLP +G DL+LG+ WL TLG HIA+Y  LS++F +  KFV
Sbjct: 438  GKISKLSVTIQGQTIVLPVFLLPFSGADLILGSSWLATLGPHIANYADLSLRFVVDGKFV 497

Query: 1481 TLHGIQQNLP--ALAQYHHIRRLSNTDAIDELFTLQ-FHASSHKPIATDSVS-IDPAMEA 1314
            TL+G+  +LP  A AQ HHIRR+  T AI E++ +Q FH SS  P      S + P ++ 
Sbjct: 498  TLNGMPDSLPTPAPAQLHHIRRMQRTHAISEVYMMQLFHVSSDAPSVEQITSTLSPDLQE 557

Query: 1313 LLNAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQG 1134
            LL+ Y+D+F  P+ LPPPR QDH+IPL++ S  +KVRPYRYPHSQK QIEKMV EML QG
Sbjct: 558  LLHRYSDIFQTPTSLPPPRAQDHSIPLMDESTVIKVRPYRYPHSQKEQIEKMVKEMLQQG 617

Query: 1133 IIQPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFS 954
            IIQPSTSPFSSP++LVKKKDGTWR CTDYRALN +T+KDSFP+P+VDELLDEL+GA YFS
Sbjct: 618  IIQPSTSPFSSPIILVKKKDGTWRCCTDYRALNTVTVKDSFPLPSVDELLDELYGARYFS 677

Query: 953  KLDLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRK 774
            KLDLRSGYHQIL+   DRHKTAFRTHQG YEWLVMPFGLSNAPASFQ LMN VF+  LRK
Sbjct: 678  KLDLRSGYHQILMNPNDRHKTAFRTHQGHYEWLVMPFGLSNAPASFQCLMNEVFQFALRK 737

Query: 773  SVLVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQG 594
             VLVFFDDILVYS  W+AHL HLE VL  L+Q +LY K SKCSFG+ +VDYLGHT+SG G
Sbjct: 738  FVLVFFDDILVYSPDWSAHLDHLERVLLTLKQQVLYVKLSKCSFGMLQVDYLGHTVSGMG 797

Query: 593  VEMDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDD 414
            V MD  KV+ + +WPLP ++KQLRGFLGLTGYYRRF++ Y+ +A+PLT LLKK+ F WDD
Sbjct: 798  VAMDKEKVRVIADWPLPINVKQLRGFLGLTGYYRRFIKAYSQIAAPLTNLLKKEGFHWDD 857

Query: 413  QATMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPR 234
             AT AF  LK  I+ APVL+LPDFSK FILETDAS +GIGA+LSQ+ HPIA+FSKKL P 
Sbjct: 858  TATTAFYNLKLVISTAPVLALPDFSKPFILETDASNTGIGAILSQEGHPIAFFSKKLGPT 917

Query: 233  MQRQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFL 54
             Q+QSAYVRE  A+T A+A+FRHYLLGH+FIIRTDQKSLKAL++Q +QTPEQQ WLHKF+
Sbjct: 918  AQKQSAYVREFRAITEALAKFRHYLLGHKFIIRTDQKSLKALLEQTLQTPEQQAWLHKFI 977

Query: 53   GFDFTIEYKPGRDNVA 6
            GFDFTIEYKPG++N+A
Sbjct: 978  GFDFTIEYKPGKENLA 993


>gb|PNX99332.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1084

 Score =  872 bits (2254), Expect = 0.0
 Identities = 431/677 (63%), Positives = 529/677 (78%), Gaps = 6/677 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTP-NIESHSSEVTVEDTVEAIEHHLSFNTFKGTHA 1839
            HKCPN+ L+L+Q +D  T    E P P ++ ++S +  +       E HLS N  KGT+ 
Sbjct: 310  HKCPNRQLMLLQYDDGDTQLFDESPDPPDLTTNSLDTNLP------ELHLSMNAMKGTNN 363

Query: 1838 VGSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEG 1659
            +G MRF G I  ++V +L+D GSSDNF+QPRIA  LK P++P   F+VLVGNG  +T+EG
Sbjct: 364  MGVMRFAGSIGHIDVQILIDGGSSDNFVQPRIAKFLKLPVEPAPIFKVLVGNGEIMTAEG 423

Query: 1658 FISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVT 1479
             I +LP++IQ H L +  YLLP+AG D++LGA WL TLG H+ADY  L+++F+L  KFVT
Sbjct: 424  VIKQLPINIQSHKLEVSAYLLPVAGADVILGASWLATLGPHVADYASLTLKFFLNGKFVT 483

Query: 1478 LHGIQQNLPALAQYHHIRRLSNTDAIDELFTLQF---HASSH--KPIATDSVSIDPAMEA 1314
            L G     P+ AQ+HH++R  NTDAI E FT+Q    H SS   + + TD   I+P +  
Sbjct: 484  LVGDPIARPSPAQFHHLQRFCNTDAIAECFTVQCVKPHESSDIFRELPTD---IEPEIAL 540

Query: 1313 LLNAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQG 1134
            LL+ +  VF  P+ LPP R  +HAIPLLEGS PVKV+PYRYPHSQK QIE MV EML QG
Sbjct: 541  LLHNFHSVFQTPTTLPPTRAHNHAIPLLEGSDPVKVKPYRYPHSQKNQIEVMVQEMLQQG 600

Query: 1133 IIQPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFS 954
            IIQPSTSPFSSP++LVKKKDGTWRFCTDYRALNAIT+KDSFPIPTVDELLDELFGA +FS
Sbjct: 601  IIQPSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAKHFS 660

Query: 953  KLDLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRK 774
            KLDLRSGYHQIL++ EDR+KTAFRTHQG YEWLVMPFGL+NAPA+FQSLMN +F+  LRK
Sbjct: 661  KLDLRSGYHQILLQPEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNTIFQTVLRK 720

Query: 773  SVLVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQG 594
             VLVFFDDIL+YS TW  HL HL  VL +L+ + L+ K SKCSFG++ ++YLGHT++G G
Sbjct: 721  YVLVFFDDILIYSKTWQEHLEHLSAVLQVLQDNQLFVKLSKCSFGVSEIEYLGHTVNGNG 780

Query: 593  VEMDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDD 414
            V MD  KVQAVL+WP P ++KQLRGFLGLTGYYRRF++ YA +ASPLT LLKK+A+ W  
Sbjct: 781  VSMDKEKVQAVLDWPTPKNVKQLRGFLGLTGYYRRFIKAYAKIASPLTDLLKKEAYDWTV 840

Query: 413  QATMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPR 234
            QA  AF  LK A+T APVL+LP+F K FILETDASG+GIGAVL QD HPIAYFSKKL PR
Sbjct: 841  QAESAFLQLKDAMTTAPVLALPNFEKPFILETDASGTGIGAVLHQDGHPIAYFSKKLVPR 900

Query: 233  MQRQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFL 54
             Q++SAY RE+ A+  A+A+FRHYLLGH+FIIRTDQKSL+ L++Q +QTP+QQ WLHKFL
Sbjct: 901  NQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRNLMEQTLQTPDQQDWLHKFL 960

Query: 53   GFDFTIEYKPGRDNVAA 3
            G+DF+IEYKPG+DN+AA
Sbjct: 961  GYDFSIEYKPGKDNIAA 977


>gb|PNY16560.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1525

 Score =  886 bits (2289), Expect = 0.0
 Identities = 433/675 (64%), Positives = 527/675 (78%), Gaps = 4/675 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDE-HTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHA 1839
            HKCPNKH++L+ VED+    PEI+Q        S+   ++   + +E HLS N  KG   
Sbjct: 313  HKCPNKHVMLLIVEDDSQIEPEIDQ--------SNHTQIDSNHQDLELHLSLNALKGASG 364

Query: 1838 VGSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEG 1659
            +G+++F G ++   + +L+D GSSDNF+QPRIA  LK  I+P   F+VLVGNG++LTSEG
Sbjct: 365  LGTIKFTGQVSNTPLQILVDGGSSDNFLQPRIAQFLKLDIEPAPLFKVLVGNGNALTSEG 424

Query: 1658 FISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVT 1479
             + +L +S+QG  L LPVYLLPI G DL+LGA WL TLG H+ADY  L+++F+ +  F+T
Sbjct: 425  IVKDLKVSVQGQELKLPVYLLPIVGADLILGATWLATLGPHVADYQALTLKFFQQGHFIT 484

Query: 1478 LHGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPI---ATDSVSIDPAMEALL 1308
            L G +   P  AQ HH+RRL  T+AI E FT+Q  +    P     T +  +DP +  LL
Sbjct: 485  LQGDKSTTPQQAQLHHMRRLHTTEAISEYFTIQ-RSDPDGPQDNWLTLAKDMDPELALLL 543

Query: 1307 NAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGII 1128
            N Y  VF +P  LPP RLQDH IPL  G+ PVKVRPYRYP SQK QIE MV EML +GII
Sbjct: 544  NQYKAVFGKPIGLPPQRLQDHVIPLEPGAKPVKVRPYRYPQSQKEQIEIMVKEMLEEGII 603

Query: 1127 QPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSKL 948
            QPSTSPFSSP++LVKKKDGTWRFCTDYRALNAIT+KDSFP+PTVDELLDELFGA YFSKL
Sbjct: 604  QPSTSPFSSPIVLVKKKDGTWRFCTDYRALNAITVKDSFPMPTVDELLDELFGAQYFSKL 663

Query: 947  DLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKSV 768
            DLRSGYHQILV  +DRHKTAFRTHQG YEWLVMPFGL+NAPASFQ LMN +F+  LRK V
Sbjct: 664  DLRSGYHQILVDPQDRHKTAFRTHQGHYEWLVMPFGLTNAPASFQCLMNQIFQPFLRKFV 723

Query: 767  LVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGVE 588
            LVFFDDILVYS ++ AHL HLE VL +L+ H L+ K SKC+FG+ +VDYLGHT+ G GV 
Sbjct: 724  LVFFDDILVYSPSFAAHLKHLEIVLQILQDHTLFVKLSKCAFGIQQVDYLGHTVLGSGVA 783

Query: 587  MDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQA 408
            MD SK+Q VL+WP P +IKQLRGFLGLTGYYR+F++ YA +A+PLT LLKKDAFKW+  A
Sbjct: 784  MDRSKIQTVLDWPTPENIKQLRGFLGLTGYYRKFIKSYAQIATPLTELLKKDAFKWNHAA 843

Query: 407  TMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRMQ 228
             MAF+ LK AIT APVL+LP F+  F LETDASGSGIGAVLSQ+ HPIA+FS+KL PRMQ
Sbjct: 844  EMAFSTLKKAITSAPVLALPQFTIPFTLETDASGSGIGAVLSQNGHPIAFFSRKLGPRMQ 903

Query: 227  RQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLGF 48
            +QSAY RE +A+T A+A+FRHYLLGH+FII+TDQKSLK+L+DQ +QTPEQQ WLHKFLG+
Sbjct: 904  KQSAYTREFFAITEAIAKFRHYLLGHKFIIKTDQKSLKSLMDQSLQTPEQQAWLHKFLGY 963

Query: 47   DFTIEYKPGRDNVAA 3
            DFT+EYKPG++N+AA
Sbjct: 964  DFTVEYKPGKENLAA 978


>gb|PNX96484.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1258

 Score =  875 bits (2262), Expect = 0.0
 Identities = 432/678 (63%), Positives = 524/678 (77%), Gaps = 7/678 (1%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVED--EHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTH 1842
            HKCPN+ L+L+Q ED  +    E+ QP         + T   T    E HLS N  KG+ 
Sbjct: 38   HKCPNRQLMLLQYEDSDDQVLDEMTQPP-------DQTTNGPTNNLPELHLSMNAMKGSS 90

Query: 1841 AVGSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSE 1662
             +G +RF G I  ++V +L+D GSSDNF+QPRIA  LK PI+P   F+VLVGNG  +T+E
Sbjct: 91   HMGVLRFTGAIEHIQVQILIDGGSSDNFVQPRIAKFLKLPIEPAPVFKVLVGNGEVMTAE 150

Query: 1661 GFISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFV 1482
            G + +LPL +QGH L +PVYLLP+AG D++LGA WL TLG H+ADY  L+I+F+L DKFV
Sbjct: 151  GIVKQLPLDVQGHRLQVPVYLLPVAGADVILGASWLSTLGPHVADYASLTIKFFLHDKFV 210

Query: 1481 TLHGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFH-----ASSHKPIATDSVSIDPAME 1317
            TL G     P  AQ+HH++R  +TDAIDE F +Q+      A   K + T++   +P + 
Sbjct: 211  TLVGEPVARPEPAQFHHMKRFHHTDAIDECFAIQWFKDNEVADIFKELPTNT---EPEIA 267

Query: 1316 ALLNAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQ 1137
             LL  Y  VF  P+ LPP R  +HAIPLLEG+ PVKV+PYRYPHSQK QIE MV +ML Q
Sbjct: 268  MLLYNYQAVFKTPTTLPPTRAHNHAIPLLEGTNPVKVKPYRYPHSQKTQIEIMVQDMLQQ 327

Query: 1136 GIIQPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYF 957
            GIIQPSTSPFSSP++LVKKKDGTWRFCTDYRALNAIT+KDSFPIPTVDELLDELFGA +F
Sbjct: 328  GIIQPSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAKHF 387

Query: 956  SKLDLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLR 777
            SKLDLRSGYHQIL++ EDRHKTAFRTHQG YEWLVMPFGL+NAPA+FQSLMN +F+  LR
Sbjct: 388  SKLDLRSGYHQILLQPEDRHKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNTIFQTVLR 447

Query: 776  KSVLVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQ 597
            K VLVFFDDILVYS TW  HL HL  VL +L+ + LY K SKCSFG+  ++YLGH +SG+
Sbjct: 448  KYVLVFFDDILVYSKTWHEHLKHLAAVLQVLQDNQLYVKLSKCSFGVLEIEYLGHVVSGE 507

Query: 596  GVEMDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWD 417
            GV MD +K+QAV++WP P +IKQLRGFLGLTGYYRRF+Q YA +ASPLT LLKK+A+ W 
Sbjct: 508  GVSMDKTKIQAVVDWPPPKNIKQLRGFLGLTGYYRRFIQSYAKIASPLTDLLKKEAYTWT 567

Query: 416  DQATMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSP 237
             Q   AF  LK AIT APVL+LPDF+K F+LETDASG GIGAVL Q+ HPIAYFSKKL P
Sbjct: 568  SQEESAFQKLKHAITTAPVLALPDFTKPFVLETDASGIGIGAVLHQEGHPIAYFSKKLVP 627

Query: 236  RMQRQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKF 57
            R QR+SAY RE+ A+  A+A+FRHYLLGH+FIIRTDQKSL+ L++Q +QTP+QQ WLH+F
Sbjct: 628  RNQRKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRNLMEQALQTPDQQEWLHRF 687

Query: 56   LGFDFTIEYKPGRDNVAA 3
            LG+DF+IEYKPG++NVAA
Sbjct: 688  LGYDFSIEYKPGKENVAA 705


>dbj|GAU11620.1| hypothetical protein TSUD_346120 [Trifolium subterraneum]
          Length = 1479

 Score =  882 bits (2280), Expect = 0.0
 Identities = 427/673 (63%), Positives = 533/673 (79%), Gaps = 2/673 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            HKCPN+ L+L+  +D      +E P+  +E  + + ++ +T +   HHLS N  KG + +
Sbjct: 309  HKCPNRQLMLLHYDDSDEEQLVE-PSITLEPKTIDSSITNTPD---HHLSLNAMKGNNTM 364

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G +RF G I   +V VL+D GSSDNF+QPRIA  LK PI+P   F+VLVGNG  +T+EG 
Sbjct: 365  GVLRFTGAIEQFKVQVLIDGGSSDNFLQPRIAKFLKLPIEPGPTFRVLVGNGEIMTAEGV 424

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            I ELPL IQGH + +PV+LLP+ G D+VLGA WL TLG H+ADY  L+++F+L+ KFVTL
Sbjct: 425  IQELPLDIQGHKIHIPVFLLPVVGADIVLGASWLATLGPHVADYASLTLKFFLEGKFVTL 484

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPIATDSV--SIDPAMEALLNA 1302
             G  +N P  AQ H  +R  NTDAI E FT+Q   ++        +  +++P +  LL+ 
Sbjct: 485  VGEHENRPVTAQLHQFKRFHNTDAIAECFTIQCIKTTEPADILHELPSNMEPELAILLHN 544

Query: 1301 YADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGIIQP 1122
            Y+ +F  P+VLPP R  +H IPL+EGS+PVKV+PYRYPHSQKAQIE MV +ML QGIIQP
Sbjct: 545  YSKLFQSPAVLPPSRSHNHCIPLIEGSSPVKVKPYRYPHSQKAQIEIMVEDMLQQGIIQP 604

Query: 1121 STSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSKLDL 942
            STSPFSSP++LVKKKDGTWRFCTDYRALNAITIKDSF IPTVDELLDELFGA YFSKLDL
Sbjct: 605  STSPFSSPIVLVKKKDGTWRFCTDYRALNAITIKDSFLIPTVDELLDELFGAKYFSKLDL 664

Query: 941  RSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKSVLV 762
            RSGYHQIL++ EDR KTAFRTH G YEWLVMPFGL+NAPA+FQSLMN++F+  LRK VLV
Sbjct: 665  RSGYHQILLQPEDRFKTAFRTHHGHYEWLVMPFGLTNAPATFQSLMNHIFQQALRKYVLV 724

Query: 761  FFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGVEMD 582
            FFDDIL+YSS+W  HL HL +VL +L+ + L+ K SKCSFG+N +DYLGH ++GQGV M+
Sbjct: 725  FFDDILIYSSSWHDHLQHLNKVLEMLQANTLFVKLSKCSFGVNEIDYLGHIVTGQGVTME 784

Query: 581  NSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQATM 402
             SKVQAVL+WP P +IKQLRGFLGLTGYYRRF++ YA +A+PLT LLKK+A+KW++QA  
Sbjct: 785  KSKVQAVLDWPTPGNIKQLRGFLGLTGYYRRFIKSYAKIAAPLTDLLKKEAYKWNEQAEA 844

Query: 401  AFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRMQRQ 222
            AF  LK A+T APVL+LP+F++ FILETDASG GIGAVL Q+ HPIAYFSKKL PR Q++
Sbjct: 845  AFQQLKIAVTSAPVLALPNFNEPFILETDASGIGIGAVLHQNNHPIAYFSKKLVPRNQKK 904

Query: 221  SAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLGFDF 42
            SAY RE+ A+  A+A+FRHYLLGH+FIIRTDQKSL++L++Q +QTP+QQ WLHKFLG+DF
Sbjct: 905  SAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRSLMEQSLQTPDQQEWLHKFLGYDF 964

Query: 41   TIEYKPGRDNVAA 3
            TIEYKPG+DN+AA
Sbjct: 965  TIEYKPGKDNLAA 977


>gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1535

 Score =  882 bits (2279), Expect = 0.0
 Identities = 431/678 (63%), Positives = 534/678 (78%), Gaps = 7/678 (1%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVE--DTVEAIEHHLSFNTFKGTH 1842
            HKCPN+ L+L+Q +D+    ++        + ++E T++  DT +  EHHLS N  KGT 
Sbjct: 309  HKCPNRQLMLIQNDDDLDADQVLDQL----TQTTETTIKSLDTNQP-EHHLSLNAMKGTS 363

Query: 1841 AVGSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSE 1662
             +G +RF G I  + V +L+D GSSDNF+QPRIA  LK PI+P  +F VLVGNG  +T+E
Sbjct: 364  NMGVLRFAGSIEHIGVQILIDGGSSDNFLQPRIAKFLKLPIEPGPQFNVLVGNGEIMTAE 423

Query: 1661 GFISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFV 1482
            G I  LPL IQGH L +PV+LLP+AG D++LGA WL TLG H+ADY  L+++F+LKDKFV
Sbjct: 424  GVIQNLPLEIQGHKLEVPVFLLPVAGADVILGASWLATLGPHVADYASLTLKFFLKDKFV 483

Query: 1481 TLHGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSH-----KPIATDSVSIDPAME 1317
            TL G     P  AQ+HH +RL+NTD+I E FT+Q   S+      K + T++   +P + 
Sbjct: 484  TLTGQAVPRPTPAQFHHFKRLANTDSIAECFTVQCLKSTDDADIFKDLPTNT---EPEIA 540

Query: 1316 ALLNAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQ 1137
             LL  Y +VF  P+ LPP R  +H IPL+EG+ PVKV+PYRYPHSQK QIE M+ +MLHQ
Sbjct: 541  MLLYTYKNVFKTPTALPPDRFHNHTIPLIEGATPVKVKPYRYPHSQKEQIEAMIQDMLHQ 600

Query: 1136 GIIQPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYF 957
            GIIQ STSPFSSP++LVKKKDGTWRFCTDYRALNAIT+KDSFPIPTVDELLDELFGA YF
Sbjct: 601  GIIQNSTSPFSSPIVLVKKKDGTWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAKYF 660

Query: 956  SKLDLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLR 777
            SKLDLRSGYHQIL++ EDRHKTAFRTHQG YEWLVMPFGL+NAPA+FQSLMN++F+  LR
Sbjct: 661  SKLDLRSGYHQILLQPEDRHKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALR 720

Query: 776  KSVLVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQ 597
            K VLVFFDDIL+YS+TW  HL HL+ VL +L+++ILY K SKC+FG+  ++YLGH ++GQ
Sbjct: 721  KYVLVFFDDILIYSNTWQDHLQHLDVVLRVLQENILYVKLSKCNFGVLEIEYLGHVVTGQ 780

Query: 596  GVEMDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWD 417
            GV MD  KVQAVL WP P ++KQLRGFLGLTGYYRRF++ YA +ASPLT LLKK+A++W+
Sbjct: 781  GVSMDKDKVQAVLNWPTPMNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYQWN 840

Query: 416  DQATMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSP 237
             QA  AF  LK AIT APVL+LP+F   FILETDASG GIGAVL Q  HPIAYFSKKL P
Sbjct: 841  AQAEEAFKQLKNAITTAPVLALPNFKLPFILETDASGVGIGAVLHQQGHPIAYFSKKLVP 900

Query: 236  RMQRQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKF 57
            R Q++SAY RE+ A+  A+A+FRHYLLGH+FIIRTDQKSL++L++Q +QTP+QQ WLHKF
Sbjct: 901  RNQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRSLMEQSLQTPDQQEWLHKF 960

Query: 56   LGFDFTIEYKPGRDNVAA 3
            LG+DFTIEYKPG++N+AA
Sbjct: 961  LGYDFTIEYKPGKENMAA 978


>dbj|GAU23504.1| hypothetical protein TSUD_39830 [Trifolium subterraneum]
          Length = 1160

 Score =  865 bits (2235), Expect = 0.0
 Identities = 424/676 (62%), Positives = 524/676 (77%), Gaps = 5/676 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            HKCPNKHL+++Q+  E    +IE+P  N E     +T  +T + +E HLS N  KG+  V
Sbjct: 26   HKCPNKHLMILQLAAE----DIEEPPAN-EPPDPPITDSETKQ-LELHLSLNALKGSSGV 79

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G+++F GHI  + V +L+D GSSDNF+QPRIA  LK  ++    F+VLVGNGHSL  EG 
Sbjct: 80   GTIKFTGHIGHIAVQILVDGGSSDNFLQPRIAKFLKLDVESAPLFKVLVGNGHSLNPEGS 139

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            IS L +++QGH + +PVYLLP+ G DL+LGA WL TLG H+ADY  L ++F+   KF+TL
Sbjct: 140  ISNLCVTVQGHEMHMPVYLLPVVGADLILGATWLATLGPHVADYQALCLKFFYNGKFITL 199

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQ-----FHASSHKPIATDSVSIDPAMEAL 1311
            HG +  LP  A  HH+RRL  T+AI+  F +       H  +   +  +   ++P M  L
Sbjct: 200  HGEKSILPQQAHLHHMRRLYQTNAIEACFAIHRADPMIHLDNWLELPEN---MEPEMVLL 256

Query: 1310 LNAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGI 1131
            LN Y  VF +P+ LPPPR Q+H IPLL G+  VKVRPYRYP SQK QIE M+ EML +GI
Sbjct: 257  LNNYKAVFHKPTGLPPPRQQNHTIPLLGGAKHVKVRPYRYPQSQKEQIELMIQEMLAEGI 316

Query: 1130 IQPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSK 951
            IQPS SPFSSP++LVKKKDGTWRFCTDYRALNAITIKDSFP+PTVDELLDELFGA  FSK
Sbjct: 317  IQPSNSPFSSPIVLVKKKDGTWRFCTDYRALNAITIKDSFPMPTVDELLDELFGAQCFSK 376

Query: 950  LDLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKS 771
            LDLRSGYHQILV+  DR+KTAFRTHQG YEWLVMPFGL+NAPASFQ LMN +F+  LRK 
Sbjct: 377  LDLRSGYHQILVEPADRYKTAFRTHQGHYEWLVMPFGLTNAPASFQCLMNQIFQPLLRKY 436

Query: 770  VLVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGV 591
            VLVFFDDILVYS +++ HL HLE VL +L+ H L+ K SKCSFG+  VDYLGHT+SG GV
Sbjct: 437  VLVFFDDILVYSPSFSTHLQHLETVLQILQHHTLFVKLSKCSFGMKEVDYLGHTVSGSGV 496

Query: 590  EMDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQ 411
             MD  KVQ VL+WP P ++KQLRGFLGLTGYYRRF++ YA++A+PLT LLKK+AF+W+  
Sbjct: 497  AMDKLKVQTVLDWPKPTNVKQLRGFLGLTGYYRRFIKSYATIATPLTNLLKKEAFEWNSN 556

Query: 410  ATMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRM 231
            A  AF+ LK+AIT APVL+LP F++ F LETDASG+G+GAVLSQ  HPIA+FSKK+ PRM
Sbjct: 557  AEQAFSHLKSAITSAPVLALPQFNQPFTLETDASGTGVGAVLSQGGHPIAFFSKKMVPRM 616

Query: 230  QRQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLG 51
            Q+QSAY REL+A+T A+A+FRHYLLGH+F I+TDQKSL++L+DQ +QTPEQQ WLHKF+G
Sbjct: 617  QKQSAYTRELFAITEAIAKFRHYLLGHKFTIKTDQKSLRSLMDQSLQTPEQQAWLHKFIG 676

Query: 50   FDFTIEYKPGRDNVAA 3
            +DF IEYKPG++NVAA
Sbjct: 677  YDFNIEYKPGKENVAA 692


>gb|AAO23078.1| polyprotein [Glycine max]
          Length = 1552

 Score =  878 bits (2268), Expect = 0.0
 Identities = 427/676 (63%), Positives = 527/676 (77%), Gaps = 5/676 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            HKCPN+ ++L+Q+E+       EQ           VT E  ++   HHLS N  +G++ V
Sbjct: 338  HKCPNRQVMLLQLEETDEDQTDEQVM---------VTEEANMDDDTHHLSLNAMRGSNGV 388

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G++RF G + G+ V +L+D GSSDNFIQPR+A  LK P++P    +VLVGNG  L++EG 
Sbjct: 389  GTIRFTGQVGGIAVKILVDGGSSDNFIQPRVAQVLKLPVEPAPNLRVLVGNGQILSAEGI 448

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            + +LPL IQG  + +PVYLL I+G D++LG+ WL TLG H+ADY  L+++F+  DKF+TL
Sbjct: 449  VQQLPLHIQGQEVKVPVYLLQISGADVILGSTWLATLGPHVADYAALTLKFFQNDKFITL 508

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPIATDSV-----SIDPAMEAL 1311
             G   +    AQ HH RRL NT +I+E F +Q      K +  D++     +IDP +  L
Sbjct: 509  QGEGNSEATQAQLHHFRRLQNTKSIEECFAIQL---IQKEVPEDTLKDLPTNIDPELAIL 565

Query: 1310 LNAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGI 1131
            L+ YA VFA P+ LPP R QDHAIPL +GS PVKVRPYRYPH+QK QIEKM+ EML QGI
Sbjct: 566  LHTYAQVFAVPASLPPQREQDHAIPLKQGSGPVKVRPYRYPHTQKDQIEKMIQEMLVQGI 625

Query: 1130 IQPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSK 951
            IQPS SPFS P+LLVKKKDG+WRFCTDYRALNAIT+KDSFP+PTVDELLDEL GA YFSK
Sbjct: 626  IQPSNSPFSLPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELHGAQYFSK 685

Query: 950  LDLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKS 771
            LDLRSGYHQILV+ EDR KTAFRTH G YEWLVMPFGL+NAPA+FQ LMN +F+  LRK 
Sbjct: 686  LDLRSGYHQILVQPEDREKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKF 745

Query: 770  VLVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGV 591
            VLVFFDDIL+YS++W  HL HLE VL  L+QH L+A+ SKCSFG   VDYLGH +SG GV
Sbjct: 746  VLVFFDDILIYSASWKDHLKHLESVLQTLKQHQLFARLSKCSFGDTEVDYLGHKVSGLGV 805

Query: 590  EMDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQ 411
             M+N+KVQAVL+WP PN++KQLRGFLGLTGYYRRF++ YA++A PLT LL+KD+F W+++
Sbjct: 806  SMENTKVQAVLDWPTPNNVKQLRGFLGLTGYYRRFIKSYANIAGPLTDLLQKDSFLWNNE 865

Query: 410  ATMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRM 231
            A  AF  LK A+T+APVLSLPDFS+ FILETDASG G+GAVL Q+ HPIAYFSKKL+PRM
Sbjct: 866  AEAAFVKLKKAMTEAPVLSLPDFSQPFILETDASGIGVGAVLGQNGHPIAYFSKKLAPRM 925

Query: 230  QRQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLG 51
            Q+QSAY REL A+T A+++FRHYLLG++FIIRTDQ+SLK+L+DQ +QTPEQQ WLHKFLG
Sbjct: 926  QKQSAYTRELLAITEALSKFRHYLLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLG 985

Query: 50   FDFTIEYKPGRDNVAA 3
            +DF IEYKPG+DN AA
Sbjct: 986  YDFKIEYKPGKDNQAA 1001


>gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1502

 Score =  873 bits (2255), Expect = 0.0
 Identities = 426/677 (62%), Positives = 524/677 (77%), Gaps = 6/677 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            HKCPN+ +LL+Q +D+    + +Q    +       T   T    EHHLS N  KGT  +
Sbjct: 311  HKCPNRQMLLLQYDDDDN--DADQVFDTLTQTEQVTTNGQTTNLPEHHLSLNALKGTSNM 368

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G +RF G I  + V +L+D GSSDNF+QPRIA  LK PI+P  +F VLVGNG  +++EG 
Sbjct: 369  GVIRFAGSIEHIGVQILIDGGSSDNFMQPRIAKFLKLPIEPGPQFNVLVGNGEVMSAEGM 428

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            I +LPL IQGHV+ +PVYLLPIAG D++LGA WL TLG H+ADY  L+++F+LK +FVTL
Sbjct: 429  IQKLPLHIQGHVIEVPVYLLPIAGADVILGASWLATLGPHVADYASLTLKFFLKGQFVTL 488

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPIATDSV------SIDPAMEA 1314
             G     P+ AQ HH +RL+ TD+I E FT+Q      KP   + +      +I+P +  
Sbjct: 489  TGEPMCRPSQAQLHHFKRLATTDSIAECFTVQ----CIKPTVEEDIFKDLPDNIEPEIAM 544

Query: 1313 LLNAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQG 1134
            LL+ Y  +F  P+ LPP R  +H+IPLLEGSAPVKV+PYRYPHSQK QIE M+ EML QG
Sbjct: 545  LLHQYRGLFQTPTTLPPNRSHNHSIPLLEGSAPVKVKPYRYPHSQKQQIELMIQEMLQQG 604

Query: 1133 IIQPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFS 954
            IIQ S SPFSSP++LVKKKDGTWRFCTDYRALNAIT+KD FPIPTVDELLDEL GA YFS
Sbjct: 605  IIQNSNSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDCFPIPTVDELLDELHGAKYFS 664

Query: 953  KLDLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRK 774
            KLDLRSGYHQIL++ EDR+KTAFRTHQG YEWLVMPFGL+NAPA+FQSLMN++F+  LRK
Sbjct: 665  KLDLRSGYHQILLQPEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNHIFQHALRK 724

Query: 773  SVLVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQG 594
             VLVFFDDIL+YSS W  HL HL+ VL +L+ + LY K SKCSFG+  ++YLGH ++GQG
Sbjct: 725  YVLVFFDDILIYSSNWQEHLHHLDTVLTVLQDNTLYVKLSKCSFGVLEIEYLGHVVTGQG 784

Query: 593  VEMDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDD 414
            V MD  KVQAV+ WP P+++KQLRGFLGLTGYYRRF++ YA +ASPLT LLKK+A++W +
Sbjct: 785  VSMDKDKVQAVVNWPTPSNVKQLRGFLGLTGYYRRFIKSYAKIASPLTDLLKKEAYQWTE 844

Query: 413  QATMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPR 234
            QA +AF+ LK AIT APVL LP+F + FILETDASG GIGAVL Q  HPIAYFSKKL PR
Sbjct: 845  QAEVAFHQLKNAITTAPVLILPNFKEPFILETDASGIGIGAVLHQQGHPIAYFSKKLVPR 904

Query: 233  MQRQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFL 54
             Q++SAY RE+ A+  A+A+FRHYLLGH+FIIRTDQKSL+ L++Q +QTPEQQ WLHKFL
Sbjct: 905  NQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRNLMEQSLQTPEQQEWLHKFL 964

Query: 53   GFDFTIEYKPGRDNVAA 3
            G+DFTIEYKPG++N+AA
Sbjct: 965  GYDFTIEYKPGKENMAA 981


>dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subterraneum]
          Length = 1531

 Score =  872 bits (2252), Expect = 0.0
 Identities = 429/676 (63%), Positives = 521/676 (77%), Gaps = 5/676 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTPNIESHSSEVTVEDTVEAIEHHLSFNTFKGTHAV 1836
            HKCPN+ L+L+Q ED       +Q    I       T   T    + HLS +  KG+  +
Sbjct: 311  HKCPNRQLMLLQYEDSE-----DQVLDEITDPPDPTTNGLTTNLPKLHLSMSAMKGSSHM 365

Query: 1835 GSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEGF 1656
            G +RF G I  ++V +L+D GSSDNF+QPRIA  LK PI+P   F+VLVGNG  +T+EG 
Sbjct: 366  GVLRFTGAIEHIQVQILIDGGSSDNFVQPRIAKFLKLPIEPAPIFKVLVGNGEVMTAEGI 425

Query: 1655 ISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVTL 1476
            + +LPL +QGH L +PVYLLP+AG D++LGA WL TLG H+ADY  L+I+F+L DKFVTL
Sbjct: 426  VKQLPLDVQGHRLQVPVYLLPVAGADVILGASWLSTLGPHVADYASLTIKFFLHDKFVTL 485

Query: 1475 HGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFH-----ASSHKPIATDSVSIDPAMEAL 1311
             G     P  AQ+HH++R  +TDAI+E F +Q+      A   K + T++   DP +  L
Sbjct: 486  VGEPIARPEPAQFHHMKRFHHTDAIEECFAIQWFKDTEAADIFKELPTNT---DPEIAML 542

Query: 1310 LNAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQGI 1131
            L  Y  VF  P++LPP R  +HAIPLLEG+ P+KV+PYRYPHSQK QIE MV +ML  GI
Sbjct: 543  LYNYQAVFKTPTMLPPTRAHNHAIPLLEGTNPIKVKPYRYPHSQKTQIETMVQDMLQHGI 602

Query: 1130 IQPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFSK 951
            IQPSTSPFSSP++LVKKKDGTWRFCTDYRALNAIT+KDSFPIPTVDELLDELFGA +FSK
Sbjct: 603  IQPSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAKHFSK 662

Query: 950  LDLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRKS 771
            LDLRSGYHQIL++ EDRHKTAFRTHQG YEWLVMPFGL+NAPA+FQSLMN +F+  LRK 
Sbjct: 663  LDLRSGYHQILLQPEDRHKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNTIFQIVLRKY 722

Query: 770  VLVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQGV 591
            VLVFFDDILVYS TW  HL HL  VL +L+ + LY K SKCSFG+  ++YLGH +SG+GV
Sbjct: 723  VLVFFDDILVYSKTWHEHLKHLAAVLQVLKDNELYVKLSKCSFGVLEIEYLGHVVSGEGV 782

Query: 590  EMDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDDQ 411
             MD SK+Q V++WP P +IKQLRGFLGLTGYYRRF+Q YA +ASPLT LLKKDA+ W+ +
Sbjct: 783  YMDKSKIQVVVDWPSPKNIKQLRGFLGLTGYYRRFIQSYAKIASPLTDLLKKDAYTWNSE 842

Query: 410  ATMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPRM 231
               AF  LK AIT APVL+LPDF+K FILETDASG GIGAVL Q+ HPIAYFSKKL PR 
Sbjct: 843  MEAAFQKLKHAITTAPVLALPDFTKPFILETDASGIGIGAVLHQEGHPIAYFSKKLVPRN 902

Query: 230  QRQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFLG 51
            QR+SAY RE+ A+  A+A+FRHYLLGH+FIIRTDQKSL+ L++Q +QTP+QQ WLH+FLG
Sbjct: 903  QRKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRNLMEQALQTPDQQEWLHRFLG 962

Query: 50   FDFTIEYKPGRDNVAA 3
            +DFTIEYKPG++NVAA
Sbjct: 963  YDFTIEYKPGKENVAA 978


>dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subterraneum]
          Length = 1512

 Score =  865 bits (2235), Expect = 0.0
 Identities = 427/677 (63%), Positives = 522/677 (77%), Gaps = 6/677 (0%)
 Frame = -2

Query: 2015 HKCPNKHLLLMQVEDEHTTPEIEQPTP-NIESHSSEVTVEDTVEAIEHHLSFNTFKGTHA 1839
            HKCPN+ L+L+Q +D  T      P P +  ++S +  + D      HHLS N  KGT  
Sbjct: 310  HKCPNRQLMLLQYDDNETQLFDGSPEPPDSPTNSLDTNIPD------HHLSMNAMKGTSN 363

Query: 1838 VGSMRFKGHINGVEVYVLLDSGSSDNFIQPRIAHCLKFPIQPDSKFQVLVGNGHSLTSEG 1659
            +G +RF G I  +EV +L+D GSSDNF+QPRIA  LK PI+P   F+VLVGNG  + +EG
Sbjct: 364  MGVIRFVGSIEHIEVQILIDGGSSDNFVQPRIAKFLKLPIEPAPVFKVLVGNGEIMNAEG 423

Query: 1658 FISELPLSIQGHVLLLPVYLLPIAGVDLVLGAPWLKTLGAHIADYDKLSIQFYLKDKFVT 1479
             I +LP+ IQGH L +P +LLP+AGVD+VLGA WL TLG H+ADY  L+++F+L  KFVT
Sbjct: 424  VIKQLPIDIQGHKLEVPAFLLPVAGVDVVLGASWLATLGPHVADYASLTLKFFLNGKFVT 483

Query: 1478 LHGIQQNLPALAQYHHIRRLSNTDAIDELFTLQFHASSHKPIATD-----SVSIDPAMEA 1314
            L G     P   Q+HH++R  NT AI E F +Q   ++    ATD       + +P +  
Sbjct: 484  LVGEPLARPEPTQFHHLKRCCNTKAIAECFIVQRLKTTE---ATDIFKELPTNTEPEIAM 540

Query: 1313 LLNAYADVFAEPSVLPPPRLQDHAIPLLEGSAPVKVRPYRYPHSQKAQIEKMVNEMLHQG 1134
            LL+ Y +VF  P+ LPP R  +H+IPLLEGS PVKV+PYRYPHSQK QIE MV +ML QG
Sbjct: 541  LLHNYQEVFKTPNGLPPTRAHNHSIPLLEGSNPVKVKPYRYPHSQKTQIEHMVQDMLQQG 600

Query: 1133 IIQPSTSPFSSPVLLVKKKDGTWRFCTDYRALNAITIKDSFPIPTVDELLDELFGAHYFS 954
            IIQPSTSPFSSP++LVKKKDGTWRFCTDYRALNAIT+KDSFPIPTVDELLDELFGA +FS
Sbjct: 601  IIQPSTSPFSSPIILVKKKDGTWRFCTDYRALNAITVKDSFPIPTVDELLDELFGAKHFS 660

Query: 953  KLDLRSGYHQILVKQEDRHKTAFRTHQGLYEWLVMPFGLSNAPASFQSLMNNVFKDQLRK 774
            KLDLRSGYHQIL++ EDR+KTAFRTHQG YEWLVMPFGL+NAPA+FQSLMN +F++ LRK
Sbjct: 661  KLDLRSGYHQILLQPEDRYKTAFRTHQGHYEWLVMPFGLTNAPATFQSLMNTIFQNVLRK 720

Query: 773  SVLVFFDDILVYSSTWTAHLAHLEEVLNLLRQHILYAKRSKCSFGLNRVDYLGHTISGQG 594
             VLVFFDDILVYS TW  HL HL  VL +L+ + L+ K SKCSFG++ ++YLGH ++GQG
Sbjct: 721  YVLVFFDDILVYSKTWQEHLKHLAAVLQVLQDNELFVKLSKCSFGVSEIEYLGHVVNGQG 780

Query: 593  VEMDNSKVQAVLEWPLPNSIKQLRGFLGLTGYYRRFVQGYASVASPLTALLKKDAFKWDD 414
            V MD  K+QAVL+WP P +IKQLRGFL LTGYYRRF+Q YA +ASPLT LLKK+A+ W  
Sbjct: 781  VSMDKEKIQAVLDWPPPKNIKQLRGFLCLTGYYRRFIQSYAKIASPLTDLLKKEAYVWTT 840

Query: 413  QATMAFNALKTAITQAPVLSLPDFSKVFILETDASGSGIGAVLSQDKHPIAYFSKKLSPR 234
            QA  AF  LK AIT APVL+LP+F+K FILETDASG GIGAVL Q+ HPIAYFSKKL PR
Sbjct: 841  QAKAAFQQLKNAITSAPVLALPNFTKTFILETDASGVGIGAVLHQEGHPIAYFSKKLVPR 900

Query: 233  MQRQSAYVRELYAVTVAMARFRHYLLGHRFIIRTDQKSLKALVDQKIQTPEQQFWLHKFL 54
             Q++SAY RE+ A+  A+A+FRHYLLGH+FIIRTDQKSL+ L++Q +QTP+QQ WLH+FL
Sbjct: 901  NQKKSAYFREMLAIAEAIAKFRHYLLGHKFIIRTDQKSLRNLMEQTLQTPDQQEWLHRFL 960

Query: 53   GFDFTIEYKPGRDNVAA 3
            G+DF+IEYKPG+DNV A
Sbjct: 961  GYDFSIEYKPGKDNVVA 977