BLASTX nr result
ID: Astragalus24_contig00001327
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus24_contig00001327
(1549 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_013455287.1| replication factor-A carboxy-terminal domain... 457 e-155
ref|XP_003605675.1| replication factor-A carboxy-terminal domain... 457 e-154
ref|XP_003605674.2| replication factor-A carboxy-terminal domain... 457 e-153
ref|XP_003600272.2| replication factor-A carboxy-terminal domain... 455 e-150
ref|XP_003593181.2| replication factor-A carboxy-terminal domain... 441 e-146
ref|XP_013446466.1| replication factor-A carboxy-terminal domain... 441 e-146
dbj|GAU46750.1| hypothetical protein TSUD_402760 [Trifolium subt... 432 e-141
gb|PNY01563.1| replication factor A protein [Trifolium pratense] 424 e-140
gb|PNX95898.1| replication factor A protein [Trifolium pratense] 425 e-140
gb|PNY13096.1| replication factor A protein [Trifolium pratense] 424 e-139
dbj|GAU20673.1| hypothetical protein TSUD_230870 [Trifolium subt... 412 e-135
gb|PNX92168.1| replication factor A protein [Trifolium pratense] 411 e-133
gb|PNY05687.1| replication factor A protein [Trifolium pratense] 392 e-126
dbj|GAU46337.1| hypothetical protein TSUD_401960 [Trifolium subt... 375 e-120
dbj|GAU46627.1| hypothetical protein TSUD_284750 [Trifolium subt... 369 e-119
gb|PNX71437.1| replication factor A protein, partial [Trifolium ... 366 e-118
dbj|GAU47630.1| hypothetical protein TSUD_137600 [Trifolium subt... 352 e-113
gb|PNY08630.1| replication factor A protein [Trifolium pratense] 353 e-113
gb|PNX95543.1| replication factor-A carboxy-terminal domain prot... 333 e-106
dbj|GAU21859.1| hypothetical protein TSUD_33550 [Trifolium subte... 330 e-105
>ref|XP_013455287.1| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
gb|KEH29318.1| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
Length = 417
Score = 457 bits (1175), Expect = e-155
Identities = 234/403 (58%), Positives = 293/403 (72%), Gaps = 8/403 (1%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVIA+EA G+K+QCTLFG+YVD+LNTF+A+G+ N VV IQLAKVK+FQ+ IHIQN +
Sbjct: 19 KLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCL 78
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
CT++ FNP CV+G +N + EN D+PSPL T L EP IDP +FL+NTPRTTIQGL
Sbjct: 79 NCTRLKFNPVCVEGTAFKNRMIENDDTPSPL--TQLAVEPSIDPLQDFLFNTPRTTIQGL 136
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
KD +E ++VVLGT+ QI+N ENW+YTAC+C KSVYP M+FCEKCN+H++KV+PRY I
Sbjct: 137 KDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSI 196
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKV 765
KVRV+D+SDCAT V+FDRDA++LFNKSCA +L+TH A +GVLP E+ ALV+ T LFKV
Sbjct: 197 KVRVVDDSDCATFVLFDRDATMLFNKSCADILETH--RADEGVLPTEIAALVNCTYLFKV 254
Query: 764 ETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 585
E K SPRFEQSFRV+K+CT VII QF KW KEEA F+KN N+ SLS+L+ KGKD
Sbjct: 255 EFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKDV 314
Query: 584 VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLAGLDDEVEILPPPID 405
+ V + V S L SLS K K + EGT IS+DL+P+FS +D +V +
Sbjct: 315 LVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGISEDLLPKFSSVAVDLDVGASKKVSN 374
Query: 404 ------NITSSVKRGSPNEDAN--EDHNLPLKLLKRAIKIEKI 300
VKR P + N E+ NLP+KLLKR IKIEKI
Sbjct: 375 CCLVKSTTRKIVKRVLPQPEINEVEEINLPIKLLKRNIKIEKI 417
>ref|XP_003605675.1| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
gb|AES87872.1| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
Length = 480
Score = 457 bits (1175), Expect = e-154
Identities = 234/403 (58%), Positives = 293/403 (72%), Gaps = 8/403 (1%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVIA+EA G+K+QCTLFG+YVD+LNTF+A+G+ N VV IQLAKVK+FQ+ IHIQN +
Sbjct: 82 KLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCL 141
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
CT++ FNP CV+G +N + EN D+PSPL T L EP IDP +FL+NTPRTTIQGL
Sbjct: 142 NCTRLKFNPVCVEGTAFKNRMIENDDTPSPL--TQLAVEPSIDPLQDFLFNTPRTTIQGL 199
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
KD +E ++VVLGT+ QI+N ENW+YTAC+C KSVYP M+FCEKCN+H++KV+PRY I
Sbjct: 200 KDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSI 259
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKV 765
KVRV+D+SDCAT V+FDRDA++LFNKSCA +L+TH A +GVLP E+ ALV+ T LFKV
Sbjct: 260 KVRVVDDSDCATFVLFDRDATMLFNKSCADILETH--RADEGVLPTEIAALVNCTYLFKV 317
Query: 764 ETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 585
E K SPRFEQSFRV+K+CT VII QF KW KEEA F+KN N+ SLS+L+ KGKD
Sbjct: 318 EFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKDV 377
Query: 584 VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLAGLDDEVEILPPPID 405
+ V + V S L SLS K K + EGT IS+DL+P+FS +D +V +
Sbjct: 378 LVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGISEDLLPKFSSVAVDLDVGASKKVSN 437
Query: 404 ------NITSSVKRGSPNEDAN--EDHNLPLKLLKRAIKIEKI 300
VKR P + N E+ NLP+KLLKR IKIEKI
Sbjct: 438 CCLVKSTTRKIVKRVLPQPEINEVEEINLPIKLLKRNIKIEKI 480
>ref|XP_003605674.2| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
gb|AES87871.2| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
Length = 560
Score = 457 bits (1175), Expect = e-153
Identities = 234/403 (58%), Positives = 293/403 (72%), Gaps = 8/403 (1%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVIA+EA G+K+QCTLFG+YVD+LNTF+A+G+ N VV IQLAKVK+FQ+ IHIQN +
Sbjct: 162 KLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCL 221
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
CT++ FNP CV+G +N + EN D+PSPL T L EP IDP +FL+NTPRTTIQGL
Sbjct: 222 NCTRLKFNPVCVEGTAFKNRMIENDDTPSPL--TQLAVEPSIDPLQDFLFNTPRTTIQGL 279
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
KD +E ++VVLGT+ QI+N ENW+YTAC+C KSVYP M+FCEKCN+H++KV+PRY I
Sbjct: 280 KDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSI 339
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKV 765
KVRV+D+SDCAT V+FDRDA++LFNKSCA +L+TH A +GVLP E+ ALV+ T LFKV
Sbjct: 340 KVRVVDDSDCATFVLFDRDATMLFNKSCADILETH--RADEGVLPTEIAALVNCTYLFKV 397
Query: 764 ETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 585
E K SPRFEQSFRV+K+CT VII QF KW KEEA F+KN N+ SLS+L+ KGKD
Sbjct: 398 EFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKDV 457
Query: 584 VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLAGLDDEVEILPPPID 405
+ V + V S L SLS K K + EGT IS+DL+P+FS +D +V +
Sbjct: 458 LVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGISEDLLPKFSSVAVDLDVGASKKVSN 517
Query: 404 ------NITSSVKRGSPNEDAN--EDHNLPLKLLKRAIKIEKI 300
VKR P + N E+ NLP+KLLKR IKIEKI
Sbjct: 518 CCLVKSTTRKIVKRVLPQPEINEVEEINLPIKLLKRNIKIEKI 560
>ref|XP_003600272.2| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
gb|AES70523.2| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
Length = 719
Score = 455 bits (1170), Expect = e-150
Identities = 233/403 (57%), Positives = 292/403 (72%), Gaps = 8/403 (1%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVIA+EA G+K+QCTLFG+YVD+LNTF+A+G+ N VV IQLAKVK+FQ+ IHIQN +
Sbjct: 321 KLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCL 380
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
CT++ FNP C +G +N + EN D+PSPL T L EP IDP +FL+NTPRTTIQGL
Sbjct: 381 NCTRLKFNPVCAEGTAFKNRMIENDDTPSPL--TQLAVEPSIDPLQDFLFNTPRTTIQGL 438
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
KD +E ++VVLGT+ QI+N ENW+YTAC+C KSVYP M+FCEKCN+H++KV+PRY I
Sbjct: 439 KDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSI 498
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKV 765
KVRV+D+SDCAT V+FDRDA++LFNKSCA +L+TH A +GVLP E+ ALV+ T LFKV
Sbjct: 499 KVRVVDDSDCATFVLFDRDATMLFNKSCADILETH--RADEGVLPTEIGALVNCTYLFKV 556
Query: 764 ETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 585
E K SPRFEQSFRV+K+CT VII QF KW KEEA F+KN N+ SLS+L+ KGKD
Sbjct: 557 EFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKDM 616
Query: 584 VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLAGLDDEVEILPPPID 405
+ V + V S L SLS K K + EGT IS+DL+P+FS +D +V +
Sbjct: 617 LVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGISEDLLPKFSSVAVDLDVGASKKVSN 676
Query: 404 ------NITSSVKRGSPNEDAN--EDHNLPLKLLKRAIKIEKI 300
VKR P + N E+ NLP+KLLKR IKIEKI
Sbjct: 677 CCLVKSTTRKIVKRVLPQPEINEVEEINLPIKLLKRNIKIEKI 719
Score = 75.5 bits (184), Expect = 1e-10
Identities = 38/55 (69%), Positives = 45/55 (81%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIH 1320
KLNVIA+EA G+K+QCTLFG+YVD LNTF+A+G+ N VV IQLAKVK KIH
Sbjct: 162 KLNVIAMEADGYKLQCTLFGTYVDKLNTFLATGETANVVVSIQLAKVK--GSKIH 214
>ref|XP_003593181.2| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
gb|AES63432.2| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
Length = 555
Score = 441 bits (1133), Expect = e-146
Identities = 218/394 (55%), Positives = 287/394 (72%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVI LEA G KIQCTLFGSYVDDLN+F+ASGD+ NA+VIIQLAK K FQ+KIH+QN +
Sbjct: 164 KLNVIELEAGGFKIQCTLFGSYVDDLNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCI 223
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
GCTKV+F PTC V MRN L+E D+PSPL +T L E K+DP +EFLY TPR T+QGL
Sbjct: 224 GCTKVIFKPTCDAAVSMRNRLSETVDTPSPLGLTQLQPEAKLDPREEFLYGTPRNTMQGL 283
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
KD T V+VVLGTI +I+N EN+WYTAC+C+K+V PDS+M++CEKC++H+ KV+ RYC+
Sbjct: 284 KDATTNEVYVVLGTIKRIVNRENFWYTACICSKAVIPDSQMFYCEKCDRHVKKVFSRYCL 343
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKV 765
+VR ID++DCATLVIFD++A+ LFNKSC ML H +G LPPE+ ++ T LFKV
Sbjct: 344 RVRAIDHTDCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKV 403
Query: 764 ETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 585
ETK +PRFEQSFRVRKIC +I +F +KW +EEA F KN + +SLS L+ KGK
Sbjct: 404 ETKVDQNPRFEQSFRVRKICAMPDVINEFKKKWGEEEAAFFKNAMEASSLSVLLDKGKAP 463
Query: 584 VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLAGLDDEVEILPPPID 405
+ + VL+Q SL+ K KE L + ++QDL+P+F++A D E +++
Sbjct: 464 MIAGSSDVLNQDDFSLTEPVEKCKEMLLGEGSGIVTQDLLPKFAVA--DCEFDVVEISQK 521
Query: 404 NITSSVKRGSPNEDANEDHNLPLKLLKRAIKIEK 303
+S KRGSP D +++ N+ LK+L++ IKIEK
Sbjct: 522 GSAASSKRGSPTTD-DDEMNMSLKMLRKTIKIEK 554
>ref|XP_013446466.1| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
gb|KEH20493.1| replication factor-A carboxy-terminal domain protein [Medicago
truncatula]
Length = 555
Score = 441 bits (1133), Expect = e-146
Identities = 218/394 (55%), Positives = 287/394 (72%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVI LEA G KIQCTLFGSYVDDLN+F+ASGD+ NA+VIIQLAK K FQ+KIH+QN +
Sbjct: 164 KLNVIELEAGGFKIQCTLFGSYVDDLNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCI 223
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
GCTKV+F PTC V MRN L+E D+PSPL +T L E K+DP +EFLY TPR T+QGL
Sbjct: 224 GCTKVIFKPTCDAAVSMRNRLSETVDTPSPLGLTQLQPEAKLDPREEFLYGTPRNTMQGL 283
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
KD T V+VVLGTI +I+N EN+WYTAC+C+K+V PDS+M++CEKC++H+ KV+ RYC+
Sbjct: 284 KDATTNEVYVVLGTIKRIVNRENFWYTACICSKAVIPDSQMFYCEKCDRHVKKVFSRYCL 343
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKV 765
+VR ID++DCATLVIFD++A+ LFNKSC ML H +G LPPE+ ++ T LFKV
Sbjct: 344 RVRAIDHTDCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKV 403
Query: 764 ETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 585
ETK +PRFEQSFRVRKIC +I +F +KW +EEA F KN + +SLS L+ KGK
Sbjct: 404 ETKVDQNPRFEQSFRVRKICAMPDVINEFKKKWGEEEAAFFKNAMEASSLSVLLDKGKAP 463
Query: 584 VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLAGLDDEVEILPPPID 405
+ + VL+Q SL+ K KE L + ++QDL+P+F++A D E +++
Sbjct: 464 MIAGSSDVLNQDDFSLTEPVEKCKEMLLGEGSGIVTQDLLPKFAVA--DCEFDVVEISQK 521
Query: 404 NITSSVKRGSPNEDANEDHNLPLKLLKRAIKIEK 303
+S KRGSP D +++ N+ LK+L++ IKIEK
Sbjct: 522 GSAASSKRGSPTTD-DDEMNMSLKMLRKTIKIEK 554
>dbj|GAU46750.1| hypothetical protein TSUD_402760 [Trifolium subterraneum]
Length = 676
Score = 432 bits (1110), Expect = e-141
Identities = 211/362 (58%), Positives = 269/362 (74%), Gaps = 11/362 (3%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQ-------EK 1326
KLNVIALEA GHK+QCTLFG YVD+LN F+ASGD NA+VI+QLAK K FQ +K
Sbjct: 137 KLNVIALEAEGHKLQCTLFGPYVDELNAFIASGDKDNAIVIVQLAKAKTFQVIDMEFVDK 196
Query: 1325 IHIQNSMGCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTP 1146
IHIQN M CT++ FNP C + V++R SL E+ +SPSP+ +T ++ EP + P DEFL+NTP
Sbjct: 197 IHIQNCMNCTRLFFNPNCQESVVLRESLPESLESPSPMTLTQISVEPAVSPVDEFLFNTP 256
Query: 1145 RTTIQGLKDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMK 966
R T+QG+KD T ES+ VV T+ +ILN + +WYTACVC KSV PDS M++CEKCNKH+MK
Sbjct: 257 RMTLQGIKDATTESLNVVCATVKRILNPDCFWYTACVCNKSVIPDSNMFYCEKCNKHVMK 316
Query: 965 VYPRYCIKVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVD 786
V+PRYC+KVRV+D++D A+ VIFD+DAS LFN SCA ML+ G G +PP++ LVD
Sbjct: 317 VFPRYCLKVRVMDHTDHASFVIFDKDASSLFNMSCADMLEHTQTIGGVGSVPPQIARLVD 376
Query: 785 TTILFKVETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSAL 606
T LFKVETKP +PRFEQ+FR+RKICT IIKQF KWD+EEA F K NN+ SLS L
Sbjct: 377 NTWLFKVETKPSTNPRFEQTFRIRKICTDHAIIKQFKDKWDREEAAFSKINNEVGSLSTL 436
Query: 605 VGKGKDKVGVSDTHVLSQGLESLSGNEG--KGKEKLAEGTASCISQDLMPQFS--LAGLD 438
+ KGKD + S ++LS+ L+SL+G+ KGKE + EGT + QDLM +FS + LD
Sbjct: 437 LEKGKDILVCSSANILSEDLQSLTGSSSKEKGKEIVCEGTPVALKQDLMNKFSSTIVNLD 496
Query: 437 DE 432
D+
Sbjct: 497 DD 498
>gb|PNY01563.1| replication factor A protein [Trifolium pratense]
Length = 526
Score = 424 bits (1091), Expect = e-140
Identities = 211/355 (59%), Positives = 263/355 (74%), Gaps = 9/355 (2%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQ-------EK 1326
KLNVIALEA GHK+QCTLFG YVD+LNTF+ASGD NAVVI+QLAK K FQ +K
Sbjct: 83 KLNVIALEAEGHKLQCTLFGPYVDELNTFIASGDKDNAVVIVQLAKAKTFQVIDMAFVDK 142
Query: 1325 IHIQNSMGCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTP 1146
IHIQN M CT+V FNP C + V++R SL E+ +SPSP+ +T ++ EP + P DEFL+NTP
Sbjct: 143 IHIQNCMNCTQVFFNPDCDESVVLRESLPESLESPSPMTLTQIHVEPTVSPLDEFLFNTP 202
Query: 1145 RTTIQGLKDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMK 966
R T+Q LKD T ES+ VV T+ ++LN + +WYTACVC KSV PDS M+FCEKCNKH+ +
Sbjct: 203 RMTLQALKDATTESLNVVCATVKRVLNPDCFWYTACVCNKSVIPDSNMFFCEKCNKHVKR 262
Query: 965 VYPRYCIKVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVD 786
V+PRYC+KVRV+D +D A V+FD+DAS LFN SCA ML+ R G G +PP++ LVD
Sbjct: 263 VFPRYCVKVRVMDQTDHAPFVMFDKDASSLFNMSCADMLEHTRRNGGVGSVPPQISGLVD 322
Query: 785 TTILFKVETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSAL 606
T LFKVETKP +PRFEQ+FRVRKICT IIKQF KWDKEEA K NN+ SLS L
Sbjct: 323 KTWLFKVETKPSTNPRFEQTFRVRKICTDYAIIKQFQDKWDKEEAAISKINNEVGSLSTL 382
Query: 605 VGKGKDKVGVSDTHVLSQGLESLSG--NEGKGKEKLAEGTASCISQDLMPQFSLA 447
V KGKD + S T++LS+ L+SL+G ++ KGKE + + T +QDLM +FS A
Sbjct: 383 VEKGKDVLVCSSTNILSEDLQSLTGSSSKDKGKEIVCDSTPVECTQDLMKKFSSA 437
>gb|PNX95898.1| replication factor A protein [Trifolium pratense]
Length = 600
Score = 425 bits (1093), Expect = e-140
Identities = 214/396 (54%), Positives = 283/396 (71%), Gaps = 3/396 (0%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVI LEA GHK+QCTLFG YVD+LNTF+++GD+ N VVI+QLAK K FQ+KIHIQN M
Sbjct: 132 KLNVIELEADGHKLQCTLFGPYVDELNTFLSAGDVDNVVVIVQLAKAKTFQDKIHIQNCM 191
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
C+ V+FNP+C + V +R SL ++ ++PSPL +T L+ E + P DEFLYNTPR T+QGL
Sbjct: 192 NCSVVIFNPSCEESVNLRASLADSVETPSPLTLTQLSVESSVRPLDEFLYNTPRITLQGL 251
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
KD T ESV VV+ T+ +ILN E++WYTAC C K+V PDS +FCEKC+KH+ KV+PR+CI
Sbjct: 252 KDTTNESVNVVVATVKRILNPESYWYTACSCGKAVIPDSGRFFCEKCDKHVPKVFPRFCI 311
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRT---AGDGVLPPELMALVDTTIL 774
KVRV+D++D ATLVIFD+DAS++ N SCA ++Q T AG G LPP++ +V+ T L
Sbjct: 312 KVRVMDHTDSATLVIFDKDASLILNMSCADLIQGIQGTGAGAGGGELPPQIEGMVEKTWL 371
Query: 773 FKVETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKG 594
FKVE KP +PRF+ S+RVRKICT IIKQF KWD EEA+FLKN N+ SLS L+ KG
Sbjct: 372 FKVEAKPSHNPRFDTSYRVRKICTDNAIIKQFKDKWDNEEAVFLKNKNEGGSLSTLLDKG 431
Query: 593 KDKVGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLAGLDDEVEILPP 414
K+ ++VLS+ ++ SGN KGKE + EGT +SQDLM +FS A +D + + +P
Sbjct: 432 KNVYVGGSSNVLSEDHDNFSGNSFKGKEIILEGTPLGVSQDLMIRFSNAVVDLDDDTMP- 490
Query: 413 PIDNITSSVKRGSPNEDANEDHNLPLKLLKRAIKIE 306
++S K+ E D +P K+ K+E
Sbjct: 491 -----SASPKQTKKFEVKEIDAAMPSVCSKQTKKVE 521
>gb|PNY13096.1| replication factor A protein [Trifolium pratense]
Length = 608
Score = 424 bits (1091), Expect = e-139
Identities = 211/355 (59%), Positives = 263/355 (74%), Gaps = 9/355 (2%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQ-------EK 1326
KLNVIALEA GHK+QCTLFG YVD+LNTF+ASGD NAVVI+QLAK K FQ +K
Sbjct: 83 KLNVIALEAEGHKLQCTLFGPYVDELNTFIASGDKDNAVVIVQLAKAKTFQVIDMAFVDK 142
Query: 1325 IHIQNSMGCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTP 1146
IHIQN M CT+V FNP C + V++R SL E+ +SPSP+ +T ++ EP + P DEFL+NTP
Sbjct: 143 IHIQNCMNCTQVFFNPDCDESVVLRESLPESLESPSPMTLTQIHVEPTVSPLDEFLFNTP 202
Query: 1145 RTTIQGLKDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMK 966
R T+Q LKD T ES+ VV T+ ++LN + +WYTACVC KSV PDS M+FCEKCNKH+ +
Sbjct: 203 RMTLQALKDATTESLNVVCATVKRVLNPDCFWYTACVCNKSVIPDSNMFFCEKCNKHVKR 262
Query: 965 VYPRYCIKVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVD 786
V+PRYC+KVRV+D +D A V+FD+DAS LFN SCA ML+ R G G +PP++ LVD
Sbjct: 263 VFPRYCVKVRVMDQTDHAPFVMFDKDASSLFNMSCADMLEHTRRNGGVGSVPPQISGLVD 322
Query: 785 TTILFKVETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSAL 606
T LFKVETKP +PRFEQ+FRVRKICT IIKQF KWDKEEA K NN+ SLS L
Sbjct: 323 KTWLFKVETKPSTNPRFEQTFRVRKICTDYAIIKQFQDKWDKEEAAISKINNEVGSLSTL 382
Query: 605 VGKGKDKVGVSDTHVLSQGLESLSG--NEGKGKEKLAEGTASCISQDLMPQFSLA 447
V KGKD + S T++LS+ L+SL+G ++ KGKE + + T +QDLM +FS A
Sbjct: 383 VEKGKDVLVCSSTNILSEDLQSLTGSSSKDKGKEIVCDSTPVECTQDLMKKFSSA 437
>dbj|GAU20673.1| hypothetical protein TSUD_230870 [Trifolium subterraneum]
Length = 531
Score = 412 bits (1059), Expect = e-135
Identities = 216/437 (49%), Positives = 279/437 (63%), Gaps = 42/437 (9%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNV+ LEA GHK+QCTLFG YVD+LNTF+ +GD+ NAVVI+Q AK K FQ+KIHIQN M
Sbjct: 120 KLNVMELEADGHKLQCTLFGQYVDELNTFIGAGDVNNAVVIVQFAKAKTFQDKIHIQNCM 179
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
C+ ++FNPTC + V +R SL++ + SP+ +T N EP++ P DEF+YNTPR T+QGL
Sbjct: 180 NCSVLIFNPTCPESVNLRASLSDAVEILSPMPLTQFNVEPRVQPIDEFMYNTPRMTLQGL 239
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
K+ T ES+ VVL T+ +ILN ++++YTAC+C+K+V PDS+M++CEKCNKH+ KV PR+CI
Sbjct: 240 KEATSESLNVVLATVKRILNPDSYYYTACMCSKAVIPDSRMFYCEKCNKHVQKVVPRFCI 299
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKV 765
KVRVID++D ATLVIFD++AS++ N SCA M+Q D G GV+PP L LV+ T LFKV
Sbjct: 300 KVRVIDHTDSATLVIFDKEASLILNMSCADMIQGADTVVGVGVVPPLLEGLVEKTWLFKV 359
Query: 764 ETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 585
E KP +P+FE S+RVRKICT + IIKQF KWD E+A F KN N
Sbjct: 360 EAKPSHNPKFEPSYRVRKICTDDAIIKQFKDKWDAEDAKFRKNRND-------------- 405
Query: 584 VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLAGL----DDEVEILP 417
L LSG KGK+ + EGT +SQDLM +FS A + DD E+ P
Sbjct: 406 ------------LSCLSGQCDKGKDLIIEGTPVGVSQDLMLKFSSANVNLDDDDTTEVFP 453
Query: 416 -------------------------------------PPIDNITSSVKRGSP-NEDANED 351
PP S KR SP +ED +ED
Sbjct: 454 EVEKGSAEVQKIAAVAGEKETTTVLAEVSVTPSSSVKPPSGRRKKSAKRVSPQHEDNDED 513
Query: 350 HNLPLKLLKRAIKIEKI 300
N P+KLLKRA+KIEK+
Sbjct: 514 ENAPMKLLKRAVKIEKL 530
>gb|PNX92168.1| replication factor A protein [Trifolium pratense]
Length = 661
Score = 411 bits (1057), Expect = e-133
Identities = 204/372 (54%), Positives = 271/372 (72%), Gaps = 4/372 (1%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVI+LEA GHK+QCTLFG YVD+LNTF+ +GDL NAVVI+QLAK K FQ+KIHIQN M
Sbjct: 169 KLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNAVVIVQLAKAKTFQDKIHIQNCM 228
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
C+ ++FNP C + R S++++ ++PSPL T L+ EP + P DEFLYNTPR T+Q L
Sbjct: 229 NCSVLLFNPNCEESQTFRASISDSDENPSPLTFTQLSNEPTVSPLDEFLYNTPRATLQDL 288
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
+D T+ES VV T+ +ILN +++WYT+C C K V PDS ++FCEKCN+H+ KV PR+C+
Sbjct: 289 RDATKESSHVVCATVKRILNPDSYWYTSCFCGKGVIPDSNLWFCEKCNRHVPKVVPRFCV 348
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDR-TAGDGVLPPEL-MALVDTTILF 771
K+RVID++D ATLV+FD++AS +FN SCA MLQ D G+G++PP + +LV+ T LF
Sbjct: 349 KLRVIDDTDSATLVVFDKEASGIFNMSCADMLQLGDADNDGEGIVPPPIDDSLVNQTWLF 408
Query: 770 KVETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGK 591
KVETKP +PRFEQSFRVRKICT E IIKQF KWD E+A+ K N+ SLS L+ KGK
Sbjct: 409 KVETKPSQNPRFEQSFRVRKICTDEGIIKQFKDKWDSEDALRTKKRNEGGSLSTLLDKGK 468
Query: 590 DKVGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQF--SLAGLDDEVEILP 417
D ++VLSQ ++ SG+ KGK + +GT +SQDLM +F S+ LDD+ P
Sbjct: 469 DVYVGGTSNVLSQECQNFSGDSDKGKGLIVDGTPVEVSQDLMLKFSESVVNLDDDSVNTP 528
Query: 416 PPIDNITSSVKR 381
+ ++TS K+
Sbjct: 529 FSVKSMTSGKKQ 540
>gb|PNY05687.1| replication factor A protein [Trifolium pratense]
Length = 651
Score = 392 bits (1007), Expect = e-126
Identities = 196/376 (52%), Positives = 263/376 (69%), Gaps = 10/376 (2%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVI+LEA GHK+QCTLFG YVD+LNTF+ +GDL N VVI+ LAK K FQ+KIHIQN M
Sbjct: 169 KLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNHVVIVHLAKAKTFQDKIHIQNCM 228
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
C+ ++FNP C + + R SL ++ ++ SPL T L+ E + P DEFLYNTPR T+Q L
Sbjct: 229 NCSVLIFNPNCEESKIFRASLNDSDENHSPLTFTQLSNESAVTPLDEFLYNTPRATLQDL 288
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
KD T+ S VV T+ + LN + +WYTAC C K+V DS+++FCEKCN+H+ KV PRYC+
Sbjct: 289 KDATKVSSHVVAATVKRTLNPDRYWYTACFCGKAVIQDSRLWFCEKCNRHVPKVVPRYCV 348
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPEL-MALVDTTILFK 768
K+RV+D++D AT V+FD++AS +FN SCA MLQ D G+ ++PPE+ LV+ T LF
Sbjct: 349 KLRVMDDTDSATFVVFDKEASAIFNMSCADMLQLGDVADGEQIVPPEIDDMLVNHTWLFM 408
Query: 767 VETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKD 588
VE KP +PRFEQSFRVRKICT EVIIKQF KWD E+A+ K N+ SLS L+ KGKD
Sbjct: 409 VEAKPSQNPRFEQSFRVRKICTDEVIIKQFKDKWDNEDAVCNKKRNEGGSLSTLLDKGKD 468
Query: 587 KVGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQF--SLAGLDDE------ 432
++ LS+ ++ SG+ KGK + +GT +SQDLM +F S+ LDD+
Sbjct: 469 VYVGGTSNFLSEECQNFSGDSDKGKGLIVDGTPLEVSQDLMLKFSESIVNLDDDSVNTSF 528
Query: 431 -VEILPPPIDNITSSV 387
V+ + P + +TS++
Sbjct: 529 CVKPMTPCVSPMTSTL 544
>dbj|GAU46337.1| hypothetical protein TSUD_401960 [Trifolium subterraneum]
Length = 593
Score = 375 bits (963), Expect = e-120
Identities = 187/355 (52%), Positives = 245/355 (69%), Gaps = 4/355 (1%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVI LEA+GHK+QCTLFG YVD+LNTF+A+GD NAVVI+QLAK K FQ+K+HIQN M
Sbjct: 120 KLNVIELEAAGHKLQCTLFGPYVDELNTFIAAGDYSNAVVIVQLAKAKTFQDKLHIQNCM 179
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
CT++ FNP C + ++R SL + +SPSP+ +T + AEP + P +EFL+NTPRTT+QGL
Sbjct: 180 NCTRLFFNPNCEESRVLRESLPVSIESPSPITLTQIQAEPAVRPVEEFLFNTPRTTLQGL 239
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
KD T ES+ VV T+ ++LN + WWYTACVC KSV PDS M++CEKCNKH+ KV+PRYC+
Sbjct: 240 KDATTESIHVVCVTVKRVLNPDCWWYTACVCNKSVIPDSNMFYCEKCNKHVSKVFPRYCL 299
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKV 765
K+RV+D +D AT VIFD+DAS LFN SCA M +++ R G GV+PP++ L D LFKV
Sbjct: 300 KIRVMDQTDHATFVIFDKDASSLFNMSCADMFESNQRLGGVGVVPPQIGMLADKNWLFKV 359
Query: 764 ETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 585
ETKP +PRFEQ+FR + SLS L+ KGKD
Sbjct: 360 ETKPTSNPRFEQTFR------------------------------EAGSLSTLLEKGKDV 389
Query: 584 VGVSDTHVLSQGLESLSGNEG--KGKEKLAEGTASCISQDLMPQFS--LAGLDDE 432
+ S T++LS+ L +L+G+ KGKE + + T SQDLM +FS + LDD+
Sbjct: 390 LAASSTNILSEDLFTLTGSSSKEKGKEIVVDCTPVEFSQDLMNKFSDTVVNLDDD 444
>dbj|GAU46627.1| hypothetical protein TSUD_284750 [Trifolium subterraneum]
Length = 526
Score = 369 bits (948), Expect = e-119
Identities = 209/438 (47%), Positives = 266/438 (60%), Gaps = 43/438 (9%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVI LEA GHK+QCTL G YVD+LNTF+ +GD+ N VVI+Q AK K FQ+KIHIQN M
Sbjct: 121 KLNVIELEAHGHKLQCTLLGQYVDELNTFIGAGDVNNTVVIVQFAKAKTFQDKIHIQNCM 180
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
C+ ++FNPTC + V +R SL++ ++ SP+ +T N E ++ P DEF+YNTPR+T+QG+
Sbjct: 181 NCSVLIFNPTCPESVNLRASLSDAVENLSPMPLTQFNGEARVQPIDEFMYNTPRSTLQGI 240
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
K+ T +V PDS+M++CEKCNKH+ KV PR+CI
Sbjct: 241 KE----------------------------ATSAVIPDSRMFYCEKCNKHVQKVVPRFCI 272
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKV 765
KVRVID++D TLVIFD++AS++ N SCA M+Q D G +PP L LVD T FKV
Sbjct: 273 KVRVIDHTDSVTLVIFDKEASLILNMSCADMIQGADPAFG---VPPLLEGLVDKTWFFKV 329
Query: 764 ETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 585
E KP +P+FEQSFRVRKICT + IIKQF KWD E+A F KN N+ SLS L+ KGKD
Sbjct: 330 EAKPSHNPKFEQSFRVRKICTDDAIIKQFKDKWDGEDAKFRKNRNEGGSLSTLLNKGKDI 389
Query: 584 VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLAGL---DD------- 435
+ ++VL + LSG KGKE + EGT +SQDLM +FS A + DD
Sbjct: 390 LVGGSSNVLCEIF--LSGESHKGKELIIEGTPVGVSQDLMLKFSSAVVNLADDDNNEAFC 447
Query: 434 EVE--------------------------------ILPPPIDNITSSVKRGSPNEDANE- 354
EVE + PP SS KR SP + NE
Sbjct: 448 EVESGSANVQTITAVAGEEKTATDLAEVSITPSTSVKPPTGGRKKSSTKRLSPQHEDNEV 507
Query: 353 DHNLPLKLLKRAIKIEKI 300
D N P+KLLKRA+KIEKI
Sbjct: 508 DENAPMKLLKRAVKIEKI 525
>gb|PNX71437.1| replication factor A protein, partial [Trifolium pratense]
Length = 465
Score = 366 bits (939), Expect = e-118
Identities = 181/313 (57%), Positives = 233/313 (74%), Gaps = 2/313 (0%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
KLNVI+LEA GHK+QCTLFG YVD+LNTF+ +GDL NAVVI+QLAK K FQ+KIHIQN M
Sbjct: 160 KLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNAVVIVQLAKAKTFQDKIHIQNCM 219
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
C+ ++FNP C + R S + + ++PSPL T L+ EP + P DEFLYNTPR T+Q L
Sbjct: 220 NCSVLLFNPNCEESQSFRASQSGSDENPSPLTFTQLSNEPTVTPLDEFLYNTPRATLQDL 279
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
KD T+ES VV T+ +ILN +++WYT+C C K V PDS+++FCEKCN+H+ KV PR+C+
Sbjct: 280 KDATKESSHVVSATVKRILNPDSYWYTSCFCGKGVIPDSRLWFCEKCNRHVPKVVPRFCV 339
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDR-TAGDGVLPPEL-MALVDTTILF 771
K+RV+D++D ATLV+FD++AS +FN SCA MLQ D G+G++PP + +LV+ T LF
Sbjct: 340 KLRVMDHTDSATLVVFDKEASGIFNMSCADMLQLGDADNDGEGIVPPPIDDSLVNQTWLF 399
Query: 770 KVETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGK 591
KVETKP +PRFEQSFRVRKICT E IIKQF KWD E+A + SLS L+ KGK
Sbjct: 400 KVETKPSQNPRFEQSFRVRKICTDEGIIKQFKDKWDSEDA-------EGGSLSTLLDKGK 452
Query: 590 DKVGVSDTHVLSQ 552
D ++VLSQ
Sbjct: 453 DVYVGGTSNVLSQ 465
>dbj|GAU47630.1| hypothetical protein TSUD_137600 [Trifolium subterraneum]
Length = 416
Score = 352 bits (902), Expect = e-113
Identities = 187/393 (47%), Positives = 258/393 (65%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1305
+LNVIALE G+KIQCTLFGS DDLN+F+A+ D+ NAVVIIQ AK K FQ+K+H+QN M
Sbjct: 37 RLNVIALEVDGYKIQCTLFGSSCDDLNSFIATRDVYNAVVIIQPAKAKTFQDKVHLQNCM 96
Query: 1304 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1125
CT++VFNP C + +++ ++ ++PSP+ +T L +E ++ P DEFLYNT +GL
Sbjct: 97 NCTRLVFNPECEEARALKSRFADDENTPSPMTLTQLTSEVRVSPLDEFLYNTLSQLFKGL 156
Query: 1124 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 945
+ S YT+C C+K+V P+S+M+FCEKC+KH+M+V PR+CI
Sbjct: 157 RMLPLYS------------------YTSCSCSKAVIPNSQMWFCEKCDKHVMRVTPRFCI 198
Query: 944 KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKV 765
KVR +DN+DC T+VIFD DAS+L +KSC A+L + R DG LP E+ LV T+LFKV
Sbjct: 199 KVRALDNTDCGTMVIFDNDASLLIHKSCQAVLDSIPRGVADGFLPNEIAGLVGQTLLFKV 258
Query: 764 ETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 585
ETK F+ +FEQSFRVRKIC +I QF KWDKE+A F K+ N+ SLS L+ KGK
Sbjct: 259 ETKAKFNTKFEQSFRVRKICADANVISQFKMKWDKEDASFSKSKNENASLSTLMDKGKTL 318
Query: 584 VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLAGLDDEVEILPPPID 405
+ + +S+ + LS K K+K+ E A I +DLMP+F A + + + P D
Sbjct: 319 LLEGSSVGISKDIVCLSSPNLKLKDKVGEHVA-FIKEDLMPKFGEAVVSCDEK---SPSD 374
Query: 404 NITSSVKRGSPNEDANEDHNLPLKLLKRAIKIE 306
S KR SP ++D +LPLKLLKR+I+++
Sbjct: 375 ---SQAKRTSPVNLDDDDMDLPLKLLKRSIRLK 404
>gb|PNY08630.1| replication factor A protein [Trifolium pratense]
Length = 473
Score = 353 bits (906), Expect = e-113
Identities = 172/319 (53%), Positives = 230/319 (72%), Gaps = 8/319 (2%)
Frame = -3
Query: 1484 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQ-------EK 1326
KLNVI+LEA GHK+QCTLFG YVD+LNTF+ +GDL NAVVI+QLAK K+FQ EK
Sbjct: 160 KLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNAVVIVQLAKAKMFQVIDWEIVEK 219
Query: 1325 IHIQNSMGCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTP 1146
IHIQN + C+ ++FNP+C + V R SL + ++PSPL T L E + P DEF+YNTP
Sbjct: 220 IHIQNCLNCSVLIFNPSCEESVTFRASLNGSEETPSPLTFTQLTVESSVQPLDEFVYNTP 279
Query: 1145 RTTIQGLKDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMK 966
R T+QGL+D T +S +VV T+ +ILN +++WYT+C+C K+ DS+M++CEKCN+H+ K
Sbjct: 280 RITLQGLRDVTSDSTYVVAATVKRILNPDSYWYTSCLCGKAAISDSRMWYCEKCNRHVPK 339
Query: 965 VYPRYCIKVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPEL-MALV 789
V PR+C+KVRV+D++D A A+ LFN SCA M+Q + G+ ++PP++ LV
Sbjct: 340 VVPRFCVKVRVMDDTDSAIF------ATSLFNMSCADMIQIGETAVGERIVPPQIDDTLV 393
Query: 788 DTTILFKVETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSA 609
D T LFKVE KP +PRFEQSFRVRKICT+E IIKQF +KWD E+A+ LK N+ SLS
Sbjct: 394 DQTWLFKVEAKPSHNPRFEQSFRVRKICTNESIIKQFKEKWDNEDALNLKIANEDGSLST 453
Query: 608 LVGKGKDKVGVSDTHVLSQ 552
L+ K KD ++VLS+
Sbjct: 454 LLEKAKDVYVGGSSNVLSE 472
>gb|PNX95543.1| replication factor-A carboxy-terminal domain protein [Trifolium
pratense]
Length = 445
Score = 333 bits (855), Expect = e-106
Identities = 163/325 (50%), Positives = 225/325 (69%), Gaps = 3/325 (0%)
Frame = -3
Query: 1346 VKLFQEKIHIQNSMGCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSD 1167
++L KIHIQN M C+ ++FNP+C + V +R SL + ++PSPL T ++ E + P D
Sbjct: 9 LRLRSSKIHIQNCMNCSVLIFNPSCDESVALRASLNGSDENPSPLTFTQVSTESSVKPLD 68
Query: 1166 EFLYNTPRTTIQGLKDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEK 987
EFL+NTPR T+QGLKD T ES VV T+ + LN ++WYT+C+C K+V PDSKM++CEK
Sbjct: 69 EFLHNTPRITLQGLKDATTESSHVVAATVKRTLNPNSYWYTSCLCGKAVVPDSKMWYCEK 128
Query: 986 CNKHIMKVYPRYCIKVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPP 807
CN+H+ KV PR+C+KVRV+D++D A VIFD++AS +FN +CA M+Q + G+ ++PP
Sbjct: 129 CNRHVSKVVPRFCVKVRVMDDTDSAIFVIFDKEASSIFNMTCADMIQNGENDVGERIVPP 188
Query: 806 EL-MALVDTTILFKVETKPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNN 630
++ L+D T LFKVE KP +PRFEQSFRVRKICT E IIK+F KWD E+A++LKN N
Sbjct: 189 QIDETLIDQTWLFKVEAKPFQNPRFEQSFRVRKICTDESIIKEFKDKWDNEDAVYLKNTN 248
Query: 629 QTNSLSALVGKGKDKVGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQDLMPQFSL 450
+ SLS L+ KGKD V ++VL + E+ SG+ KGK + T +SQDLM +FS
Sbjct: 249 EDGSLSTLLEKGKDDYVVGSSNVLCEEFENFSGDSDKGKGLIVGRTTVDVSQDLMTKFSS 308
Query: 449 A--GLDDEVEILPPPIDNITSSVKR 381
A L D+ + P I TS VK+
Sbjct: 309 AVVNLGDDFDSTPLCIKPKTSIVKQ 333
>dbj|GAU21859.1| hypothetical protein TSUD_33550 [Trifolium subterraneum]
Length = 388
Score = 330 bits (846), Expect = e-105
Identities = 184/427 (43%), Positives = 246/427 (57%), Gaps = 43/427 (10%)
Frame = -3
Query: 1451 HKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSMGCTKVVFNPTC 1272
HK QCTLFG YVD+LNTF+ +GD+ NAVVI+Q AK K FQ+KIHIQN M C+ ++FNPTC
Sbjct: 7 HKPQCTLFGQYVDELNTFIGAGDVNNAVVIVQFAKAKTFQDKIHIQNCMNCSVLIFNPTC 66
Query: 1271 VDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGLKDCTRESVFVV 1092
+ V +R SL + ++ SP+ +T NAE ++ P DEFLYNTPR T+QGLK+ T ES+ VV
Sbjct: 67 PESVNLRASLIDAVETLSPMPLTQFNAEVRVQPIDEFLYNTPRITLQGLKEATSESLNVV 126
Query: 1091 LGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCIKVRVIDNSDCA 912
+ T+ +ILN ++++YTAC+C+K+V PDS+M++CEKCNKH+ KV PR+CIKVRVID++D A
Sbjct: 127 VATVKRILNPDSYYYTACMCSKAVIPDSRMFYCEKCNKHVQKVVPRFCIKVRVIDHTDSA 186
Query: 911 TLVIFDRDASVLFNKSCAAMLQTHDRTAGDGVLPPELMALVDTTILFKVETKPVFSPRFE 732
TLVIFD++AS++FN SCA M+Q D G G++ P L LV+ T LFK
Sbjct: 187 TLVIFDKEASLIFNMSCADMIQVVDLAVGVGIVSPLLEGLVEKTWLFK------------ 234
Query: 731 QSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDKVGVSDTHVLSQ 552
+ SLS + KGK+ ++VLS+
Sbjct: 235 ----------------------------------EGGSLSTFLNKGKNIYVGGSSNVLSE 260
Query: 551 GLESLSGNEGKGKEKLAEGTASCISQDLMPQFSLA------------------------- 447
SLSG KG + + EGT +SQDLM +FS A
Sbjct: 261 DYGSLSGQSHKGNDLIIEGTHVGVSQDLMLKFSSAVVNLADGDNIEPVFEVESGSAEVQR 320
Query: 446 -----------------GLDDEVEILPPPIDNITSSVKRGSP-NEDANEDHNLPLKLLKR 321
L + PP S+VKR SP +ED +ED N P+KLLKR
Sbjct: 321 ITAVSGEKKTTTDLAEVSLTPSTSVKPPTGGRKKSAVKRVSPQHEDNDEDENAPMKLLKR 380
Query: 320 AIKIEKI 300
+KIEKI
Sbjct: 381 TVKIEKI 387