BLASTX nr result
ID: Astragalus23_contig00027671
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus23_contig00027671
(625 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo... 60 2e-18
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo... 59 4e-17
gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposo... 60 4e-17
gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposo... 60 4e-17
dbj|GAU13081.1| hypothetical protein TSUD_173810 [Trifolium subt... 67 8e-17
ref|XP_014622404.1| PREDICTED: uncharacterized mitochondrial pro... 58 5e-16
dbj|GAU43783.1| hypothetical protein TSUD_378080 [Trifolium subt... 57 5e-16
dbj|GAU27211.1| hypothetical protein TSUD_108020 [Trifolium subt... 60 1e-15
dbj|GAU31266.1| hypothetical protein TSUD_153410 [Trifolium subt... 60 1e-15
gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense] 61 1e-15
gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense] 62 1e-15
gb|PNX93770.1| histone deacetylase [Trifolium pratense] 59 2e-15
gb|PNX92906.1| retrovirus-related Pol polyprotein from transposo... 59 2e-15
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo... 61 3e-15
dbj|GAU37351.1| hypothetical protein TSUD_395330 [Trifolium subt... 56 3e-15
gb|KYP71144.1| Retrovirus-related Pol polyprotein from transposo... 61 3e-15
gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposo... 56 4e-15
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo... 56 4e-15
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo... 56 4e-15
gb|KYP56497.1| Retrovirus-related Pol polyprotein from transposo... 63 4e-15
>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1429
Score = 60.5 bits (145), Expect(2) = 2e-18
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQPKF---------YSWYSN*IQDVEDILITGTSLPLV*QL 215
+A AWYE + LI+FGFQQ K + + V+DI+ITG+S + +
Sbjct: 1066 QAPRAWYESLTNTLISFGFQQSKCDPSLLIFNKHGCCLLILIYVDDIIITGSSNTAINLI 1125
Query: 216 VTKLNILFALKQLGDLDFFLGIKLNMLPA 302
V KLN F+LKQLG L++FLGI+ + P+
Sbjct: 1126 VNKLNATFSLKQLGTLEYFLGIECKLTPS 1154
Score = 59.7 bits (143), Expect(2) = 2e-18
Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 20/131 (15%)
Frame = +1
Query: 292 CFLPSSGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIV 468
C L SG+L LSQA Y R R + + ++KLS+ G+D ++P L+RSIV
Sbjct: 1149 CKLTPSGALHLSQAKYIRDILHRAGMEDCKGISTPLPANLKLSKTGADPFDNPTLYRSIV 1208
Query: 469 GEVQHVTVTKPSSG----SLILFLEMKFV---------------NLCHSHELQPASAMSP 591
G +Q+ T+T+P G + F V ++ H L PA+ +P
Sbjct: 1209 GALQYATITRPELGYSVSKVCQFFAQPLVSHWSAVKRILRYLKGSIDHGLTLLPATTSAP 1268
Query: 592 LSLKASCDTDW 624
LS+ A CD DW
Sbjct: 1269 LSINAFCDADW 1279
>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 535
Score = 58.5 bits (140), Expect(3) = 4e-17
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 9/85 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQ----PKFYSWYSN*-----IQDVEDILITGTSLPLV*QL 215
+A AWY+R L+ GF + P + N + V+DILITG++ L+ L
Sbjct: 171 QAPRAWYDRLTQTLLQMGFTKSRCDPSLLVHHQNGACTYVLVYVDDILITGSAPHLIKDL 230
Query: 216 VTKLNILFALKQLGDLDFFLGIKLN 290
+ KLNI FALKQLG++D+FLG++++
Sbjct: 231 IHKLNIKFALKQLGEVDYFLGLEVH 255
Score = 52.4 bits (124), Expect(3) = 4e-17
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 20/127 (15%)
Frame = +1
Query: 304 SSGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQ 480
+SGS++L Q+ Y + + K S + S KLS++G+D +EDP+L+RS VG +Q
Sbjct: 258 TSGSILLHQSKYIKDLLCKTKMENCKPIGSPMVSSCKLSKFGTDTMEDPSLYRSTVGALQ 317
Query: 481 HVTVTKP----SSGSLILFLE-------------MKFVNLCHSHE--LQPASAMSPLSLK 603
+ T+T+P S + F+ ++++ +H L P+ + P S++
Sbjct: 318 YATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRILRYLKGTENHGLLLHPSKSSPPFSIR 377
Query: 604 ASCDTDW 624
A D DW
Sbjct: 378 AYSDADW 384
Score = 25.0 bits (53), Expect(3) = 4e-17
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 1 ENNDINLVCKLQKPFY 48
E++D NLVCKL K Y
Sbjct: 152 ESSDKNLVCKLHKALY 167
>gb|KHN36156.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 60.5 bits (145), Expect(2) = 4e-17
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 9/89 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------VEDILITGTSLPLV*QL 215
+A AWY+R L+ GF + K Q+ V+DILITG++ L+ L
Sbjct: 1062 QAPRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGSAPHLISDL 1121
Query: 216 VTKLNILFALKQLGDLDFFLGIKLNMLPA 302
+ KLN+ FALKQLG +D+FLGI+++ LP+
Sbjct: 1122 IHKLNMKFALKQLGQIDYFLGIEVHHLPS 1150
Score = 55.5 bits (132), Expect(2) = 4e-17
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 20/126 (15%)
Frame = +1
Query: 307 SGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQH 483
SG+L+L+Q Y R + S + S +LS+YGSD + DP L+RSIVG +Q+
Sbjct: 1150 SGALLLNQTKYIRDLLCKAHMEDSAPIGSPMVSSCRLSKYGSDTMTDPTLYRSIVGALQY 1209
Query: 484 VTVTKP----SSGSLILFLE-------------MKFVN--LCHSHELQPASAMSPLSLKA 606
T+T+P S + F+ ++++N L H L P+ P SL+A
Sbjct: 1210 ATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRILRYLNGTLSHGLLLTPSPTSPPFSLRA 1269
Query: 607 SCDTDW 624
D DW
Sbjct: 1270 YSDADW 1275
>gb|KHN22040.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Glycine soja]
Length = 1417
Score = 60.5 bits (145), Expect(2) = 4e-17
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 9/89 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------VEDILITGTSLPLV*QL 215
+A AWY+R L+ GF + K Q+ V+DILITG++ L+ L
Sbjct: 1062 QAPRAWYDRLTQALLQLGFVKSKCDPSLLIHTQNGACTYVLIYVDDILITGSAPHLISDL 1121
Query: 216 VTKLNILFALKQLGDLDFFLGIKLNMLPA 302
+ KLN+ FALKQLG +D+FLGI+++ LP+
Sbjct: 1122 IHKLNMKFALKQLGQIDYFLGIEVHHLPS 1150
Score = 55.5 bits (132), Expect(2) = 4e-17
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 20/126 (15%)
Frame = +1
Query: 307 SGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQH 483
SG+L+L+Q Y R + S + S +LS+YGSD + DP L+RSIVG +Q+
Sbjct: 1150 SGALLLNQTKYIRDLLCKAHMEDSAPIGSPMVSSCRLSKYGSDTMTDPTLYRSIVGALQY 1209
Query: 484 VTVTKP----SSGSLILFLE-------------MKFVN--LCHSHELQPASAMSPLSLKA 606
T+T+P S + F+ ++++N L H L P+ P SL+A
Sbjct: 1210 ATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRILRYLNGTLSHGLLLTPSPTSPPFSLRA 1269
Query: 607 SCDTDW 624
D DW
Sbjct: 1270 YSDADW 1275
>dbj|GAU13081.1| hypothetical protein TSUD_173810 [Trifolium subterraneum]
Length = 1295
Score = 66.6 bits (161), Expect(3) = 8e-17
Identities = 40/96 (41%), Positives = 59/96 (61%), Gaps = 16/96 (16%)
Frame = +3
Query: 60 NKALHA-------WYER*ASILINFGFQ----QPKFYSWYSN*-----IQDVEDILITGT 191
NKAL+ W++R + L+ FGFQ P +++ N + V+DI+ITG+
Sbjct: 1044 NKALYGLKQAPRQWFDRLTTALLQFGFQASKCDPSLFTYTKNRQVVYLLVYVDDIIITGS 1103
Query: 192 SLPLV*QLVTKLNILFALKQLGDLDFFLGIKLNMLP 299
S LV LV KL+ +F+LKQLGDL++FLGI++ LP
Sbjct: 1104 SSTLVQTLVQKLDSVFSLKQLGDLEYFLGIEVKQLP 1139
Score = 45.1 bits (105), Expect(3) = 8e-17
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Frame = +1
Query: 403 SIKLSRYGSDFVEDPALHRSIVGEVQHVTVTKP----SSGSLILFLEMKFVN-------- 546
S KLS+ GS + D L+RS+VG +Q+ T+T+P + + F+ F +
Sbjct: 1173 SCKLSKVGSAGMSDTTLYRSVVGSLQYATITRPEISFAVNKVCQFMSAPFESHWIAVKRI 1232
Query: 547 -------LCHSHELQPASAMSPLSLKASCDTDW 624
+ ++ P + PL LK CD DW
Sbjct: 1233 LRYLRGTIQFGLKISPTAVHHPLPLKVLCDADW 1265
Score = 23.1 bits (48), Expect(3) = 8e-17
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +1
Query: 10 DINLVCKLQKPFY 48
D NLVCKL K Y
Sbjct: 1036 DANLVCKLNKALY 1048
>ref|XP_014622404.1| PREDICTED: uncharacterized mitochondrial protein AtMg00810-like
[Glycine max]
Length = 443
Score = 57.8 bits (138), Expect(2) = 5e-16
Identities = 44/119 (36%), Positives = 63/119 (52%), Gaps = 13/119 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQPKFYSW---YSN*IQDV------EDILITGTSLPLV*QL 215
+A W++R L+ GF K S Y + + V +DI++TG+S L+ QL
Sbjct: 78 QAPRQWFDRLKFTLLQLGFVSSKSDSSLFIYRHQLHTVYLLVYVDDIILTGSSTSLIQQL 137
Query: 216 VTKLNILFALKQLGDLDFFLGIKLNMLPAFLWFSYPI----SSYV*TDLLNKAEMVTAN 380
KLN F+LKQLG LDFFLG+++ L F+ I S Y+ DLL+K M A+
Sbjct: 138 TDKLNTAFSLKQLGHLDFFLGLEIKYL-----FNKSILMTQSKYI-RDLLHKTNMAEAH 190
Score = 54.7 bits (130), Expect(2) = 5e-16
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 23/102 (22%)
Frame = +1
Query: 388 HSIACSI----KLSRYGSDFVEDPALHRSIVGEVQHVTVTKPSSGSLI------------ 519
HSI+ + KLSR+G+D DP L+RS+VG +Q+ T+T+P ++
Sbjct: 190 HSISSPMVSNCKLSRHGADAFHDPTLYRSVVGALQYATLTRPEISFVVNKVCQFMVAPLD 249
Query: 520 -------LFLEMKFVNLCHSHELQPASAMSPLSLKASCDTDW 624
L L H LQP S PL+++A C+ DW
Sbjct: 250 SHWTVVKRILRYLKGTLSHGLLLQPTSIAKPLNIRAFCNADW 291
>dbj|GAU43783.1| hypothetical protein TSUD_378080 [Trifolium subterraneum]
Length = 796
Score = 56.6 bits (135), Expect(2) = 5e-16
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Frame = +1
Query: 307 SGSLILSQAMYRRIY*TRLKW*LQMNFHSIACSI----KLSRYGSDFVEDPALHRSIVGE 474
SG L+L Q+ Y + + K NF I + KLS++G D + DP L+RS VG
Sbjct: 554 SGGLLLHQSKYIKDLLVKTK---MENFKPIGSPMVSGYKLSKFGIDAMTDPTLYRSTVGA 610
Query: 475 VQHVTVTKPSSGSLILFLEMKFVNLCHSHELQPASAMSPLSLKASCDTDW 624
+Q+ T+T+P + + L H LQP + P SL+A D DW
Sbjct: 611 LQYATLTRPD-----IAYSVNKGTLHHGLLLQPCLSSPPFSLRAYSDADW 655
Score = 55.8 bits (133), Expect(2) = 5e-16
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQPKF---------YSWYSN*IQDVEDILITGTSLPLV*QL 215
+A AWYE+ L+ GF + + + + + V+DILITG+ L+ L
Sbjct: 466 QAPRAWYEKLTQTLLQMGFTKSRCDPSLLVHHQHGACTYVLVYVDDILITGSDSHLIKDL 525
Query: 216 VTKLNILFALKQLGDLDFFLGIKLN 290
+ KLN FALKQLG++D+FLGI+++
Sbjct: 526 IHKLNAKFALKQLGEVDYFLGIEVH 550
>dbj|GAU27211.1| hypothetical protein TSUD_108020 [Trifolium subterraneum]
Length = 967
Score = 59.7 bits (143), Expect(2) = 1e-15
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------VEDILITGTSLPLV*QL 215
+A AWYER L+ GF K Q V+DILITG++ L+ L
Sbjct: 637 QAPRAWYERLTQALLQMGFVTSKCDPSLLIHHQKGACTYVLIYVDDILITGSTPHLIHDL 696
Query: 216 VTKLNILFALKQLGDLDFFLGIKLNMLPA 302
+ KLN+ FALKQLG++D+FLGI+++ +P+
Sbjct: 697 IHKLNVKFALKQLGEVDYFLGIEVHHMPS 725
Score = 51.6 bits (122), Expect(2) = 1e-15
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 20/126 (15%)
Frame = +1
Query: 307 SGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQH 483
SG L+L+Q+ Y R +R S + S KLS++G+D + DP+L+RS VG +Q+
Sbjct: 725 SGDLLLNQSKYVRDLLSRTNMENCKAIGSPMVSSCKLSKFGTDSMSDPSLYRSTVGALQY 784
Query: 484 VTVTKP----SSGSLILFLE-------------MKFVNLCHSHE--LQPASAMSPLSLKA 606
T+T+P S + F+ ++++ +H L P+S+ P SL+
Sbjct: 785 ATLTRPDISFSVNKVCQFMANPLETHWKAVKRILRYLKGTSNHGLLLHPSSSSPPFSLRT 844
Query: 607 SCDTDW 624
D DW
Sbjct: 845 YSDADW 850
>dbj|GAU31266.1| hypothetical protein TSUD_153410 [Trifolium subterraneum]
Length = 844
Score = 60.1 bits (144), Expect(2) = 1e-15
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 16/95 (16%)
Frame = +3
Query: 60 NKALHA-------WYER*ASILINFGFQQPK------FYSWYSN*IQ---DVEDILITGT 191
NKAL+ W+++ + LI FGF K YS S + V+DI+I G+
Sbjct: 477 NKALYGLKQAPRQWFDKLTTTLIQFGFNASKCDPSLFIYSQKSQVVYLLVYVDDIIIIGS 536
Query: 192 SLPLV*QLVTKLNILFALKQLGDLDFFLGIKLNML 296
S LV LV KL+ +F+LKQLGDLD+FLGI++ L
Sbjct: 537 SPTLVQHLVDKLDAVFSLKQLGDLDYFLGIEVKHL 571
Score = 51.2 bits (121), Expect(2) = 1e-15
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Frame = +1
Query: 310 GSLILSQAMYRRIY*TRLKW*LQMNFHSIAC----SIKLSRYGSDFVEDPALHRSIVGEV 477
GSL+L+Q Y + + + + IA S KLS+ GSD V D L+RS+VG +
Sbjct: 574 GSLLLTQTKYIKDLLVKTN---MFDCNPIATPMMSSCKLSKVGSDNVADATLYRSVVGSL 630
Query: 478 QHVTVTKPSSGSLILFLEMKFVNLCHSH-------------------ELQPASAMSPLSL 600
Q+ T+T+P + + SH +L P + PLS+
Sbjct: 631 QYATITRPEISFAVNKVCQFMPTPLESHWAAVKRILRYLKGTSFSGLKLFPTNIHHPLSI 690
Query: 601 KASCDTDW 624
KA CD DW
Sbjct: 691 KAYCDADW 698
>gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]
Length = 1438
Score = 60.8 bits (146), Expect(2) = 1e-15
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------VEDILITGTSLPLV*QL 215
+A AWYER L+ GF K Q V+DILITG+S L+ L
Sbjct: 1084 QAPRAWYERLTQTLVQMGFSASKCDPSLLVHHQQGACTYVLIYVDDILITGSSSQLIEDL 1143
Query: 216 VTKLNILFALKQLGDLDFFLGIKLN 290
+ KLNI FALKQLG++D+FLGI+++
Sbjct: 1144 IHKLNIQFALKQLGEIDYFLGIEVH 1168
Score = 50.1 bits (118), Expect(2) = 1e-15
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Frame = +1
Query: 304 SSGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQ 480
SSG+L+L+Q+ Y + + S + + +LS++G+D + DP+L+RS VG +Q
Sbjct: 1171 SSGALLLNQSKYIKDLLVKTNMDNCKPIGSPMVSTCRLSKFGTDALSDPSLYRSTVGALQ 1230
Query: 481 HVTVTKPSSGSLI----------LFLEMKFV---------NLCHSHELQPASAMSPLSLK 603
+ T+T+P + L K V + H L P+S+ P SL+
Sbjct: 1231 YATLTRPDIAFSVNKVCQYMAHPLESHWKAVKRILRYLQGTISHGLLLSPSSSSPPFSLR 1290
Query: 604 ASCDTDW 624
A D DW
Sbjct: 1291 AYSDADW 1297
>gb|PNX93512.1| histone deacetylase, partial [Trifolium pratense]
Length = 1418
Score = 62.4 bits (150), Expect(2) = 1e-15
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 9/111 (8%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQPKF---------YSWYSN*IQDVEDILITGTSLPLV*QL 215
+A AWYER L+ GF + K + + + V+DILITG+ LV L
Sbjct: 1069 QAPRAWYERLTQTLLQMGFVKSKCDPSLLVHHQHGACTYVLVYVDDILITGSDSQLVKDL 1128
Query: 216 VTKLNILFALKQLGDLDFFLGIKLNMLPAFLWFSYPISSYV*TDLLNKAEM 368
+ KLNI FALKQLG++D+FLGI+++ P+ + S YV DLL K M
Sbjct: 1129 IHKLNIKFALKQLGEVDYFLGIEVHHKPSGGLLLHQ-SKYV-KDLLVKTNM 1177
Score = 48.5 bits (114), Expect(2) = 1e-15
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 19/93 (20%)
Frame = +1
Query: 403 SIKLSRYGSDFVEDPALHRSIVGEVQHVTVTKPSSGSLILFLEMKFVNLCHSH------- 561
S KLS++G+D + DP L+RS VG +Q+ T+T+P + + + SH
Sbjct: 1190 SCKLSKFGTDVMTDPTLYRSTVGALQYATLTRPDISYSVNKVCQFMAHPLESHWKAVKRI 1249
Query: 562 ------------ELQPASAMSPLSLKASCDTDW 624
LQP+ + P SL+A D DW
Sbjct: 1250 LRYLKGTLNYGLLLQPSPSSPPFSLRAYSDADW 1282
>gb|PNX93770.1| histone deacetylase [Trifolium pratense]
Length = 1453
Score = 59.3 bits (142), Expect(2) = 2e-15
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------VEDILITGTSLPLV*QL 215
+A AWYER L+ GF K Q V+DILITG++ L+ L
Sbjct: 1091 QAPRAWYERLTQALLQMGFVTSKCDPSLLVHHQQGACTYVLIYVDDILITGSAPHLIQDL 1150
Query: 216 VTKLNILFALKQLGDLDFFLGIKLNMLPA 302
+ KLNI F+LKQLG++D+FLGI+++ +P+
Sbjct: 1151 IHKLNIQFSLKQLGEVDYFLGIEVHHMPS 1179
Score = 51.2 bits (121), Expect(2) = 2e-15
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Frame = +1
Query: 307 SGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQH 483
SG L+L+Q+ Y + +R K S + S +LS++G+D + DP+L+RS VG +Q+
Sbjct: 1179 SGGLLLNQSKYIKDLLSRTKMENCKAIGSPMVSSCRLSKFGTDSMSDPSLYRSTVGALQY 1238
Query: 484 VTVTKP----SSGSLILFLE-------------MKFVNLCHSHE--LQPASAMSPLSLKA 606
T+T+P S + F+ ++++ +H L P+ + P SL+A
Sbjct: 1239 ATLTRPDISYSVNKVCQFMSNPLETHWKAVKRILRYLKGTSNHGLLLHPSPSSPPFSLRA 1298
Query: 607 SCDTDW 624
D DW
Sbjct: 1299 YSDADW 1304
>gb|PNX92906.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 1196
Score = 59.3 bits (142), Expect(2) = 2e-15
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 9/89 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQPKFYSWYSN*IQD---------VEDILITGTSLPLV*QL 215
+A AWYER L+ GF K Q V+DILITG++ L+ L
Sbjct: 834 QAPRAWYERLTQTLLQMGFVASKCDPSLLIHHQQGACTYVLIYVDDILITGSAPHLIQDL 893
Query: 216 VTKLNILFALKQLGDLDFFLGIKLNMLPA 302
+ KLNI F+LKQLG++D+FLGI+++ +P+
Sbjct: 894 IHKLNIQFSLKQLGEVDYFLGIEVHHMPS 922
Score = 50.8 bits (120), Expect(2) = 2e-15
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Frame = +1
Query: 307 SGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQH 483
SG L+L+Q+ Y + +R K S + S +LS++G+D + DP+L+RS VG +Q+
Sbjct: 922 SGGLLLNQSKYIKDLLSRTKMENCKAIGSPMVSSCRLSKFGTDSMSDPSLYRSTVGALQY 981
Query: 484 VTVTKP----SSGSLILFLE-------------MKFVNLCHSHEL--QPASAMSPLSLKA 606
T+T+P S + F+ ++++ +H L P+ + P SL+A
Sbjct: 982 ATLTRPDISYSVNKVCQFMANPLETHWKAVKRILRYLKGTSNHGLLIHPSPSSPPFSLRA 1041
Query: 607 SCDTDW 624
D DW
Sbjct: 1042 YSDADW 1047
>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1268
Score = 61.2 bits (147), Expect(2) = 3e-15
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 18/125 (14%)
Frame = +3
Query: 60 NKALHA-------WYER*ASILINFGFQQPKFY-SWYSN*IQD--------VEDILITGT 191
NKAL+ W++R L+ FGFQ K S + QD V+DI+ITG+
Sbjct: 957 NKALYGVKQAPRQWFDRLKFTLLQFGFQASKCDPSLFMYKHQDQIIFLLVYVDDIIITGS 1016
Query: 192 SLPLV*QLVTKLNILFALKQLGDLDFFLGIKLNMLP--AFLWFSYPISSYV*TDLLNKAE 365
S + Q+ +LN F+LKQLG LD+FLGI++ LP + L S Y+ DLL+K
Sbjct: 1017 SSQFIQQITDQLNSTFSLKQLGQLDYFLGIEIKHLPDKSLLMTQ---SKYI-RDLLHKTS 1072
Query: 366 MVTAN 380
M A+
Sbjct: 1073 MAEAH 1077
Score = 48.5 bits (114), Expect(2) = 3e-15
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +1
Query: 409 KLSRYGSDFVEDPALHRSIVGEVQHVTVTKPSSGSLILFLEMKFVNLCHSHELQPASAMS 588
KLS+ G+D DP L+RS+VG +Q+ T+T+P + +C S
Sbjct: 1088 KLSKSGADLFHDPTLYRSVVGALQYATLTRPE-------ISFAVNKVCQS--------WK 1132
Query: 589 PLSLKASCDTDW 624
P S+ A CD+DW
Sbjct: 1133 PFSITAMCDSDW 1144
>dbj|GAU37351.1| hypothetical protein TSUD_395330 [Trifolium subterraneum]
Length = 1216
Score = 55.8 bits (133), Expect(2) = 3e-15
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 9/89 (10%)
Frame = +3
Query: 63 KALHAWYER*ASILINFGFQQ----PKFYSWYSN*-----IQDVEDILITGTSLPLV*QL 215
+A AWY++ L++ GF + P N + ++DILITG++ L+ L
Sbjct: 973 QAPRAWYDKLTQALLHMGFVKSRCDPSLLVHNQNGTCTYVLIYMDDILITGSTPTLINDL 1032
Query: 216 VTKLNILFALKQLGDLDFFLGIKLNMLPA 302
+ KLN+ FALK+LG +D+FLG++++ LP+
Sbjct: 1033 INKLNVQFALKRLGAVDYFLGLEVHHLPS 1061
Score = 53.9 bits (128), Expect(2) = 3e-15
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 20/126 (15%)
Frame = +1
Query: 307 SGSLILSQAMYRRIY*TRLKW*LQMNFHS-IACSIKLSRYGSDFVEDPALHRSIVGEVQH 483
SG+L+L+Q Y R + + S + S +LS++G+D + DP L+RSIVG +Q+
Sbjct: 1061 SGALLLNQTKYIRDLLCKAHMEDSKHVGSPMVSSCRLSKFGTDTMTDPTLYRSIVGALQY 1120
Query: 484 VTVTKP----SSGSLILF---------LEMKFV------NLCHSHELQPASAMSPLSLKA 606
T+T+P S + F LE+K + L H + P++ P SL+A
Sbjct: 1121 ATLTRPDIVFSVNKVCQFMAKPLDSHWLEVKRILRYLKGTLSHGILINPSTTSPPFSLRA 1180
Query: 607 SCDTDW 624
D DW
Sbjct: 1181 YSDADW 1186
>gb|KYP71144.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 438
Score = 61.2 bits (147), Expect(2) = 3e-15
Identities = 48/125 (38%), Positives = 67/125 (53%), Gaps = 18/125 (14%)
Frame = +3
Query: 60 NKALHA-------WYER*ASILINFGFQQPKFY-SWYSN*IQD--------VEDILITGT 191
NKAL+ W++R L+ FGFQ K S + QD V+DI+ITG+
Sbjct: 127 NKALYGVKQAPRQWFDRLKFTLLQFGFQASKCDPSLFMYKHQDQIIFLLVYVDDIIITGS 186
Query: 192 SLPLV*QLVTKLNILFALKQLGDLDFFLGIKLNMLP--AFLWFSYPISSYV*TDLLNKAE 365
S + Q+ +LN F+LKQLG LD+FLGI++ LP + L S Y+ DLL+K
Sbjct: 187 SSQFIQQITDQLNSTFSLKQLGQLDYFLGIEIKHLPDKSLLMTQ---SKYI-RDLLHKTS 242
Query: 366 MVTAN 380
M A+
Sbjct: 243 MAEAH 247
Score = 48.5 bits (114), Expect(2) = 3e-15
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +1
Query: 409 KLSRYGSDFVEDPALHRSIVGEVQHVTVTKPSSGSLILFLEMKFVNLCHSHELQPASAMS 588
KLS+ G+D DP L+RS+VG +Q+ T+T+P + +C S
Sbjct: 258 KLSKSGADLFHDPTLYRSVVGALQYATLTRPE-------ISFAVNKVCQS--------WK 302
Query: 589 PLSLKASCDTDW 624
P S+ A CD+DW
Sbjct: 303 PFSITAMCDSDW 314
>gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1358
Score = 55.8 bits (133), Expect(2) = 4e-15
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 16/96 (16%)
Frame = +3
Query: 60 NKALHA-------WYER*ASILINFGFQ----QPKFYSWYSN*-----IQDVEDILITGT 191
NKAL+ W+ + L FGFQ P + + + V+DI+ITG+
Sbjct: 986 NKALYGLKQAPRQWFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGS 1045
Query: 192 SLPLV*QLVTKLNILFALKQLGDLDFFLGIKLNMLP 299
S L+ Q+ +L+ +F+LKQLG LD+FLGI++ LP
Sbjct: 1046 SSLLIQQITNQLDSIFSLKQLGSLDYFLGIEVKHLP 1081
Score = 53.5 bits (127), Expect(2) = 4e-15
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 19/91 (20%)
Frame = +1
Query: 409 KLSRYGSDFVEDPALHRSIVGEVQHVTVTKP----SSGSLILFLE-------------MK 537
KLSR G+DF DP RS+VG +Q+ T+T+P + + F+ +K
Sbjct: 1117 KLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILK 1176
Query: 538 FV--NLCHSHELQPASAMSPLSLKASCDTDW 624
++ L + +QPA+ P+SL A CD DW
Sbjct: 1177 YLKGTLSYGLHMQPAAVNGPISLTAFCDADW 1207
>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1279
Score = 55.8 bits (133), Expect(2) = 4e-15
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 16/96 (16%)
Frame = +3
Query: 60 NKALHA-------WYER*ASILINFGFQ----QPKFYSWYSN*-----IQDVEDILITGT 191
NKAL+ W+ + L FGFQ P + + + V+DI+ITG+
Sbjct: 907 NKALYGLKQAPRQWFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGS 966
Query: 192 SLPLV*QLVTKLNILFALKQLGDLDFFLGIKLNMLP 299
S L+ Q+ +L+ +F+LKQLG LD+FLGI++ LP
Sbjct: 967 SSLLIQQITNQLDSIFSLKQLGSLDYFLGIEVKHLP 1002
Score = 53.5 bits (127), Expect(2) = 4e-15
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 19/91 (20%)
Frame = +1
Query: 409 KLSRYGSDFVEDPALHRSIVGEVQHVTVTKP----SSGSLILFLE-------------MK 537
KLSR G+DF DP RS+VG +Q+ T+T+P + + F+ +K
Sbjct: 1038 KLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILK 1097
Query: 538 FV--NLCHSHELQPASAMSPLSLKASCDTDW 624
++ L + +QPA+ P+SL A CD DW
Sbjct: 1098 YLKGTLSYGLHMQPAAVNGPISLTAFCDADW 1128
>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 539
Score = 55.8 bits (133), Expect(2) = 4e-15
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 16/96 (16%)
Frame = +3
Query: 60 NKALHA-------WYER*ASILINFGFQ----QPKFYSWYSN*-----IQDVEDILITGT 191
NKAL+ W+ + L FGFQ P + + + V+DI+ITG+
Sbjct: 167 NKALYGLKQAPRQWFNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGS 226
Query: 192 SLPLV*QLVTKLNILFALKQLGDLDFFLGIKLNMLP 299
S L+ Q+ +L+ +F+LKQLG LD+FLGI++ LP
Sbjct: 227 SSLLIQQITNQLDSIFSLKQLGSLDYFLGIEVKHLP 262
Score = 53.5 bits (127), Expect(2) = 4e-15
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 19/91 (20%)
Frame = +1
Query: 409 KLSRYGSDFVEDPALHRSIVGEVQHVTVTKP----SSGSLILFLE-------------MK 537
KLSR G+DF DP RS+VG +Q+ T+T+P + + F+ +K
Sbjct: 298 KLSRSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILK 357
Query: 538 FV--NLCHSHELQPASAMSPLSLKASCDTDW 624
++ L + +QPA+ P+SL A CD DW
Sbjct: 358 YLKGTLSYGLHMQPAAVNGPISLTAFCDADW 388
>gb|KYP56497.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 391
Score = 62.8 bits (151), Expect(2) = 4e-15
Identities = 49/125 (39%), Positives = 67/125 (53%), Gaps = 18/125 (14%)
Frame = +3
Query: 60 NKALHA-------WYER*ASILINFGFQQPKFY-SWYSN*IQD--------VEDILITGT 191
NKAL+ W++R L+ FGFQ K S + QD V+DI+ITG+
Sbjct: 19 NKALYGLKQAPRQWFDRLKFTLLQFGFQASKCDPSLFMYKHQDQIIFLLVYVDDIIITGS 78
Query: 192 SLPLV*QLVTKLNILFALKQLGDLDFFLGIKLNMLP--AFLWFSYPISSYV*TDLLNKAE 365
S + Q+ +LN F+LKQLG LD+FLGIK+ LP + L S Y+ DLL+K
Sbjct: 79 SSQFIQQITDQLNSTFSLKQLGQLDYFLGIKIKHLPDKSLLMTQ---SKYI-QDLLHKTS 134
Query: 366 MVTAN 380
M A+
Sbjct: 135 MAEAH 139
Score = 46.6 bits (109), Expect(2) = 4e-15
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 19/91 (20%)
Frame = +1
Query: 409 KLSRYGSDFVEDPALHRSIVGEVQHVTVTKP----SSGSLILFLE-------------MK 537
KLS+ G+D DP L+RS+VG +Q+ T+T+P + + F+ ++
Sbjct: 150 KLSKTGADLFHDPTLYRSVVGALQYATLTRPEISFAVNKVCQFMANPLDSHWVAVKRILR 209
Query: 538 FVNLCHSHELQPASAM--SPLSLKASCDTDW 624
++ SH L S + P S+ A CD+DW
Sbjct: 210 YLKGTLSHGLHMKSVVLGKPFSITAMCDSDW 240