BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00026540
         (591 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX98468.1| putative copia-type polyprotein, partial [Trifoli...   162   6e-67
dbj|GAU18816.1| hypothetical protein TSUD_81050 [Trifolium subte...   168   3e-66
gb|PNX93875.1| copia-type polyprotein [Trifolium pratense]            158   6e-65
gb|PNX96991.1| retrotransposon-related protein [Trifolium pratense]   153   6e-65
dbj|GAU22960.1| hypothetical protein TSUD_247040 [Trifolium subt...   164   1e-63
dbj|GAU43423.1| hypothetical protein TSUD_334860 [Trifolium subt...   153   2e-63
gb|PNY18017.1| copia-type polyprotein [Trifolium pratense]            155   2e-63
gb|PNX95963.1| retrotransposon-related protein, partial [Trifoli...   157   5e-63
gb|KYP39567.1| Retrovirus-related Pol polyprotein from transposo...   163   5e-63
gb|KYP40164.1| Retrovirus-related Pol polyprotein from transposo...   154   1e-62
dbj|GAU47093.1| hypothetical protein TSUD_369260 [Trifolium subt...   160   3e-62
dbj|GAU26253.1| hypothetical protein TSUD_224440 [Trifolium subt...   160   4e-62
gb|KYP46743.1| Retrovirus-related Pol polyprotein from transposo...   152   6e-62
dbj|GAU40007.1| hypothetical protein TSUD_257990 [Trifolium subt...   159   1e-61
dbj|GAU46598.1| hypothetical protein TSUD_99480 [Trifolium subte...   151   2e-61
dbj|GAU26464.1| hypothetical protein TSUD_294300 [Trifolium subt...   158   3e-61
dbj|GAU47720.1| hypothetical protein TSUD_285070 [Trifolium subt...   155   3e-61
dbj|GAU30479.1| hypothetical protein TSUD_18590 [Trifolium subte...   150   3e-61
gb|KYP68287.1| Retrovirus-related Pol polyprotein from transposo...   147   4e-61
gb|KYP31826.1| Retrovirus-related Pol polyprotein from transposo...   147   4e-61

>gb|PNX98468.1| putative copia-type polyprotein, partial [Trifolium pratense]
          Length = 1267

 Score =  162 bits (411), Expect(2) = 6e-67
 Identities = 69/111 (62%), Positives = 91/111 (81%)
 Frame = +2

Query: 221 EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
           + K + H+ WGE  +TAV+++NR  TK+L  KTP EAW+ +KP+V +L+IFGSL FRHVP
Sbjct: 642 KAKNMPHKFWGEATSTAVYIINRSPTKKLQEKTPHEAWTGLKPSVNHLRIFGSLSFRHVP 701

Query: 401 DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEW 553
           +QN+RKLDD++Q M+L+GYHPTGAYKLY P + KVVISRD+  DESKGW+W
Sbjct: 702 EQNRRKLDDRSQQMILLGYHPTGAYKLYSPKENKVVISRDIKFDESKGWDW 752



 Score =  119 bits (299), Expect(2) = 6e-67
 Identities = 53/77 (68%), Positives = 66/77 (85%)
 Frame = +3

Query: 6   FKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAERR 185
           FK +K+LVEK SG  +K LRTD GGEYTS EFA+FC+DEGI HE+TAPYTPQHNGVAER+
Sbjct: 570 FKKFKTLVEKHSGCSVKKLRTDGGGEYTSHEFAKFCEDEGIVHEITAPYTPQHNGVAERK 629

Query: 186 NRTVLNMARCMMKGREL 236
           NR+++NMAR M+K + +
Sbjct: 630 NRSIMNMARSMLKAKNM 646


>dbj|GAU18816.1| hypothetical protein TSUD_81050 [Trifolium subterraneum]
          Length = 1380

 Score =  168 bits (426), Expect(2) = 3e-66
 Identities = 74/114 (64%), Positives = 90/114 (78%)
 Frame = +2

Query: 227 KRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVPDQ 406
           K + H+ W E V TA  +LNRC TKRL   TPEEAWS VKP+VK+ ++FGSLC+RHVP+Q
Sbjct: 642 KNLPHKFWAEAVYTATHILNRCPTKRLEGITPEEAWSGVKPSVKHFRMFGSLCYRHVPEQ 701

Query: 407 NKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDED 568
           N+RKLD +AQ M+LIGYH TGAYKLYDP+ KK+V+S DVIVDESK W WK   +
Sbjct: 702 NRRKLDSRAQTMILIGYHSTGAYKLYDPIHKKIVVSNDVIVDESKEWNWKESTE 755



 Score =  111 bits (278), Expect(2) = 3e-66
 Identities = 51/78 (65%), Positives = 60/78 (76%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           +FK +K LVEKQ    +K+LRTD GGEYTS EF  FC D+GI HEV  PYTPQHNG AER
Sbjct: 567 IFKQFKLLVEKQCDSTIKLLRTDGGGEYTSHEFENFCKDDGIIHEVMTPYTPQHNGTAER 626

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT+LNM RCM++ + L
Sbjct: 627 RNRTLLNMVRCMLREKNL 644


>gb|PNX93875.1| copia-type polyprotein [Trifolium pratense]
          Length = 1350

 Score =  158 bits (399), Expect(2) = 6e-65
 Identities = 69/118 (58%), Positives = 88/118 (74%)
 Frame = +2

Query: 221  EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
            +GK +   LWGE V+TA + LNRC TKRL   TPEE+WS  KP+VK+L++FGS+ ++HVP
Sbjct: 652  KGKHLPKELWGEAVSTATYTLNRCPTKRLDGITPEESWSGNKPSVKHLRVFGSIAYKHVP 711

Query: 401  DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDEDSN 574
            DQ +RKLDDKA  M+L+GYH TG YKLYDP    VV+SRDV++DE K W+W   E  N
Sbjct: 712  DQLRRKLDDKATMMILVGYHSTGGYKLYDPTNNNVVVSRDVVIDEMKEWDWHTKEKRN 769



 Score =  117 bits (294), Expect(2) = 6e-65
 Identities = 54/78 (69%), Positives = 62/78 (79%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +K  VE+QSG  LK LRTD GGEY STEFA+FCD EGI H+V  PYTPQ NG AER
Sbjct: 579 VFKKFKLTVERQSGYKLKTLRTDGGGEYVSTEFAKFCDSEGIVHDVIPPYTPQQNGSAER 638

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT++NM RCM+KG+ L
Sbjct: 639 RNRTIMNMVRCMLKGKHL 656


>gb|PNX96991.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1333

 Score =  153 bits (387), Expect(2) = 6e-65
 Identities = 67/117 (57%), Positives = 88/117 (75%)
 Frame = +2

Query: 227 KRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVPDQ 406
           K++  R W E V+TAV++LNRC TKRL  K PEE WS  KP+V +LK+FGSLC++HVPD 
Sbjct: 618 KQLPKRFWAEAVSTAVYLLNRCPTKRLNEKVPEEVWSKSKPSVAHLKVFGSLCYKHVPDA 677

Query: 407 NKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDEDSNK 577
            ++KLDDK++AM+ +GYH TGAY+LY+P+  KV ISRDV V E + W+WK    S K
Sbjct: 678 RRKKLDDKSEAMIFVGYHRTGAYRLYNPITNKVEISRDVKVLEDENWDWKQKSSSKK 734



 Score =  122 bits (306), Expect(2) = 6e-65
 Identities = 56/78 (71%), Positives = 68/78 (87%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +K+LVEKQSG  +K+LRTD GGEYTSTEF  FC ++GI HEVTAPYTPQHNG+AER
Sbjct: 543 VFKKFKALVEKQSGKSIKVLRTDGGGEYTSTEFENFCTEQGIIHEVTAPYTPQHNGLAER 602

Query: 183 RNRTVLNMARCMMKGREL 236
           RNR++LNMAR M+K ++L
Sbjct: 603 RNRSILNMARSMVKQKQL 620


>dbj|GAU22960.1| hypothetical protein TSUD_247040 [Trifolium subterraneum]
          Length = 1167

 Score =  164 bits (414), Expect(2) = 1e-63
 Identities = 71/115 (61%), Positives = 90/115 (78%)
 Frame = +2

Query: 221 EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
           +GK +   LWGEVV+TA +VLNRC TKRL   TPEE WS  KPNV +LK+FGS+ +RHVP
Sbjct: 604 KGKHLPKELWGEVVSTACYVLNRCPTKRLNGVTPEECWSGNKPNVSHLKVFGSIAYRHVP 663

Query: 401 DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDE 565
           DQ + KLDDK++ M+L+GYHPTG Y+LYDP+ K +VISRDVI+DE K W W  ++
Sbjct: 664 DQLRSKLDDKSEVMVLVGYHPTGGYRLYDPMHKSIVISRDVIIDEMKEWNWNGNK 718



 Score =  107 bits (267), Expect(2) = 1e-63
 Identities = 48/78 (61%), Positives = 60/78 (76%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +K++ EKQS   LK+L+TD GGEY S  F+ +C+ EGI HEV  PYTPQ NG AER
Sbjct: 531 VFKKFKAMAEKQSDHKLKVLKTDGGGEYVSNAFSEYCEAEGIMHEVIPPYTPQQNGSAER 590

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT++NM RCM+KG+ L
Sbjct: 591 RNRTIMNMVRCMIKGKHL 608


>dbj|GAU43423.1| hypothetical protein TSUD_334860 [Trifolium subterraneum]
          Length = 1102

 Score =  153 bits (387), Expect(2) = 2e-63
 Identities = 68/115 (59%), Positives = 86/115 (74%)
 Frame = +2

Query: 221 EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
           +GK +   LWGEVV TA ++LN C TKRL   TPEE WS  KP+VK+L++FGS+ ++HVP
Sbjct: 561 KGKHLPKELWGEVVATATYILNLCPTKRLNGITPEECWSKNKPSVKHLRVFGSIAYKHVP 620

Query: 401 DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDE 565
           DQ +RKLD KA  M+L+GYH TG YKLYDP+ K VV+SRDV+ DE K W+W   E
Sbjct: 621 DQLRRKLDVKATTMILVGYHSTGGYKLYDPVNKNVVVSRDVVFDEMKEWDWNMQE 675



 Score =  117 bits (293), Expect(2) = 2e-63
 Identities = 53/78 (67%), Positives = 63/78 (80%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +KS+VE+QSG  LK+LRTD GGEY S +FA  C+ EGI HEV  PYTPQHNG AER
Sbjct: 488 VFKKFKSVVERQSGHKLKVLRTDGGGEYVSHDFAELCESEGIVHEVIPPYTPQHNGSAER 547

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT++NM RCM+KG+ L
Sbjct: 548 RNRTIMNMVRCMLKGKHL 565


>gb|PNY18017.1| copia-type polyprotein [Trifolium pratense]
          Length = 999

 Score =  155 bits (391), Expect(2) = 2e-63
 Identities = 62/112 (55%), Positives = 89/112 (79%)
 Frame = +2

Query: 248 WGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVPDQNKRKLDD 427
           WGE VNTAV+VLN+C T++L +K PEE W   KP+V + ++FG+LC++HVP+  ++KLDD
Sbjct: 329 WGEAVNTAVYVLNKCPTRKLKDKVPEEVWCGKKPSVSHFRVFGALCYKHVPEAKRKKLDD 388

Query: 428 KAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDEDSNKKI 583
           ++++M+L+GYH TGAYKLYDP+ KK+  SRDVIVDE K W+W +   S+K +
Sbjct: 389 RSESMILVGYHATGAYKLYDPISKKMTFSRDVIVDEGKSWDWISGSSSSKPV 440



 Score =  115 bits (288), Expect(2) = 2e-63
 Identities = 55/78 (70%), Positives = 63/78 (80%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +K+LVE QS   +KILRTD GGEYTS  F  FC + GI HEVTAPYTPQHNG+AER
Sbjct: 247 VFKRFKALVENQSSKRIKILRTDGGGEYTSRSFESFCVENGIEHEVTAPYTPQHNGLAER 306

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT+L+MARCM+K R L
Sbjct: 307 RNRTILDMARCMVKHRNL 324


>gb|PNX95963.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1290

 Score =  157 bits (397), Expect(2) = 5e-63
 Identities = 69/115 (60%), Positives = 91/115 (79%)
 Frame = +2

Query: 221 EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
           +GK +    WGE VNTA +VLNRC TKRL + TPEE W+  KP+VK+L+IFGSLC+RH+P
Sbjct: 610 KGKGLPKCYWGEAVNTAAYVLNRCPTKRLKDNTPEELWTGHKPSVKHLRIFGSLCYRHIP 669

Query: 401 DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDE 565
           D+ +RKLDDK++ ++LIGY  TGAY+LY+P   KVVISRDVIVDE   W+W +++
Sbjct: 670 DEKRRKLDDKSEKLILIGYDATGAYRLYNPNNNKVVISRDVIVDEKSQWKWSSED 724



 Score =  112 bits (279), Expect(2) = 5e-63
 Identities = 52/78 (66%), Positives = 62/78 (79%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           +FK + +L E+QS   LK+LRTD GGEY S EF  +C   GI HEVTAPYTPQHNG+AER
Sbjct: 537 MFKNFCALAERQSEHKLKVLRTDGGGEYNSKEFQAYCTQRGIIHEVTAPYTPQHNGLAER 596

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT+LNMARCM+KG+ L
Sbjct: 597 RNRTLLNMARCMLKGKGL 614


>gb|KYP39567.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 593

 Score =  163 bits (412), Expect(2) = 5e-63
 Identities = 68/121 (56%), Positives = 91/121 (75%)
 Frame = +2

Query: 221 EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
           + K + H  WGE V TA ++LN C TKR+  KTPEE WS  KP+VK+LK+FGS+C+RH+P
Sbjct: 429 KSKGLPHSFWGEAVATAAYILNLCPTKRIKEKTPEEVWSKKKPSVKHLKVFGSICWRHIP 488

Query: 401 DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDEDSNKK 580
           D+ +RKLDD++  ++L+GYHPTGAYKLYDP+ KK+ ISRD+IVDE   W W + E +   
Sbjct: 489 DERRRKLDDRSMKLILVGYHPTGAYKLYDPITKKITISRDIIVDEKASWNWNSLERNMNN 548

Query: 581 I 583
           I
Sbjct: 549 I 549



 Score =  106 bits (264), Expect(2) = 5e-63
 Identities = 52/77 (67%), Positives = 59/77 (76%)
 Frame = +3

Query: 6   FKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAERR 185
           F  +K LVEKQSG  +KILR+D GGEY + EFA F   EGI HE+  PYTPQHNGVAERR
Sbjct: 357 FVQFKKLVEKQSGKVIKILRSDGGGEYNNGEFASFYKKEGIIHEIVPPYTPQHNGVAERR 416

Query: 186 NRTVLNMARCMMKGREL 236
           NRT+LNMAR MMK + L
Sbjct: 417 NRTILNMARSMMKSKGL 433


>gb|KYP40164.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1289

 Score =  154 bits (390), Expect(2) = 1e-62
 Identities = 66/122 (54%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
 Frame = +2

Query: 221 EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
           + K + H  WGE V TA ++LN C TK+L  KTPEE WS  KP+VK+L++FGS+C++H+P
Sbjct: 619 KSKEMPHSFWGEAVATAAYILNLCPTKKLKFKTPEEVWSGKKPSVKHLRVFGSVCWKHIP 678

Query: 401 DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKN-DEDSNK 577
           D+ +RKLDDK+  ++L+GYH TGAYKL DP+ K+VVISRDV+VDE   W W + D ++N 
Sbjct: 679 DERRRKLDDKSIKLVLVGYHATGAYKLIDPITKRVVISRDVLVDEKTTWNWSSLDSNNNN 738

Query: 578 KI 583
           ++
Sbjct: 739 RL 740



 Score =  113 bits (283), Expect(2) = 1e-62
 Identities = 52/77 (67%), Positives = 64/77 (83%)
 Frame = +3

Query: 6   FKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAERR 185
           F  +KSLVEKQSG  +K++R+D GGEYT++EF  FC  EG+ HEV APYTPQHNG+AERR
Sbjct: 547 FVEFKSLVEKQSGKVIKVIRSDGGGEYTNSEFEIFCKKEGLIHEVVAPYTPQHNGIAERR 606

Query: 186 NRTVLNMARCMMKGREL 236
           NRTVLNMAR M+K +E+
Sbjct: 607 NRTVLNMARSMLKSKEM 623


>dbj|GAU47093.1| hypothetical protein TSUD_369260 [Trifolium subterraneum]
          Length = 1158

 Score =  160 bits (405), Expect(2) = 3e-62
 Identities = 74/119 (62%), Positives = 90/119 (75%)
 Frame = +2

Query: 224 GKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVPD 403
           GK +   LWGE VNTA +VLNRC TKRL N TPEE WS  KPNV +LK+FGS+ + HVPD
Sbjct: 531 GKNLPKELWGEAVNTACYVLNRCPTKRLNNLTPEECWSGNKPNVSHLKVFGSIAYSHVPD 590

Query: 404 QNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDEDSNKK 580
           Q + KLDDK++ M+L+GYH TG Y+LYDP+ K ++ISRDVIVDE K W+W     SNKK
Sbjct: 591 QLRSKLDDKSEVMVLVGYHLTGGYRLYDPISKSIMISRDVIVDEMKEWDW----CSNKK 645



 Score =  106 bits (265), Expect(2) = 3e-62
 Identities = 47/78 (60%), Positives = 60/78 (76%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +K++ EKQS   LK+L+TD GGEY S  F+ FC+ EGI HEV  PYTPQ NG AER
Sbjct: 457 VFKKFKAMAEKQSDHKLKVLKTDGGGEYVSNAFSEFCEAEGIVHEVIPPYTPQQNGSAER 516

Query: 183 RNRTVLNMARCMMKGREL 236
           RN+T++NM RCM++G+ L
Sbjct: 517 RNKTIMNMVRCMIRGKNL 534


>dbj|GAU26253.1| hypothetical protein TSUD_224440 [Trifolium subterraneum]
          Length = 1312

 Score =  160 bits (406), Expect(2) = 4e-62
 Identities = 74/119 (62%), Positives = 91/119 (76%)
 Frame = +2

Query: 224  GKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVPD 403
            GK +   LWGE VNTA +VLNRC TKRL + TPEE WS  KPN+ +LK+FGS+ +RHVPD
Sbjct: 668  GKHLPKELWGEAVNTACYVLNRCPTKRLNDVTPEECWSGNKPNMSHLKVFGSIAYRHVPD 727

Query: 404  QNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDEDSNKK 580
            Q + KLDDK++ M+L+GYH TG Y+LYDP+ K +VISRDVIVDE K W+W     SNKK
Sbjct: 728  QLRSKLDDKSEVMVLVGYHLTGGYRLYDPISKSIVISRDVIVDEMKEWDW----CSNKK 782



 Score =  105 bits (262), Expect(2) = 4e-62
 Identities = 47/78 (60%), Positives = 60/78 (76%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +K++ +KQS   LK+L+TD GGEY S  F+ FC+ EGI HEV  PYTPQ NG AER
Sbjct: 594 VFKKFKAMAKKQSDHKLKVLKTDGGGEYVSKVFSEFCEAEGIVHEVIPPYTPQQNGSAER 653

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT++NM RCM++G+ L
Sbjct: 654 RNRTIMNMVRCMIRGKHL 671


>gb|KYP46743.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 892

 Score =  152 bits (384), Expect(2) = 6e-62
 Identities = 65/122 (53%), Positives = 92/122 (75%), Gaps = 1/122 (0%)
 Frame = +2

Query: 221 EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
           + K + H  WGE V TA ++LN C TK+L  KTPEE WS  KP+VK+L++FGS+C++H+P
Sbjct: 628 KSKEMPHSFWGEAVATAAYILNLCPTKKLKFKTPEEVWSGKKPSVKHLRVFGSVCWKHIP 687

Query: 401 DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKN-DEDSNK 577
           D+ +RKLDDK+  ++L+GYH TGAYKL +P+ K VVISRDV+VDE   W W + + +SN 
Sbjct: 688 DERRRKLDDKSMKLVLVGYHATGAYKLINPITKGVVISRDVLVDEKTTWNWSSLESNSNN 747

Query: 578 KI 583
           ++
Sbjct: 748 RV 749



 Score =  113 bits (283), Expect(2) = 6e-62
 Identities = 52/77 (67%), Positives = 64/77 (83%)
 Frame = +3

Query: 6   FKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAERR 185
           F  +KSLVEKQSG  +K++R+D GGEYT++EF  FC  EG+ HEV APYTPQHNG+AERR
Sbjct: 556 FVEFKSLVEKQSGKVIKVIRSDGGGEYTNSEFEIFCKKEGLIHEVVAPYTPQHNGIAERR 615

Query: 186 NRTVLNMARCMMKGREL 236
           NRTVLNMAR M+K +E+
Sbjct: 616 NRTVLNMARSMLKSKEM 632


>dbj|GAU40007.1| hypothetical protein TSUD_257990 [Trifolium subterraneum]
          Length = 1286

 Score =  159 bits (401), Expect(2) = 1e-61
 Identities = 74/119 (62%), Positives = 91/119 (76%)
 Frame = +2

Query: 224  GKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVPD 403
            GK +   LWGE VNTA +VLNRC TKRL + TPEE WS  KPNV +LK+FGS+ +RHVPD
Sbjct: 668  GKHLPKELWGEAVNTACYVLNRCPTKRLNDVTPEECWSGNKPNVIHLKVFGSIAYRHVPD 727

Query: 404  QNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDEDSNKK 580
            Q + KL+DK++ M+L+GYH TG Y+LYDP+ K +VISRDVIVDE K W+W     SNKK
Sbjct: 728  QLRSKLNDKSEVMVLVGYHLTGGYRLYDPISKSIVISRDVIVDEMKEWDW----CSNKK 782



 Score =  106 bits (264), Expect(2) = 1e-61
 Identities = 47/78 (60%), Positives = 60/78 (76%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +K++ EKQS   LK+L+TD GGEY S  F+ FC+ EGI HEV  PYTPQ NG A+R
Sbjct: 594 VFKKFKAMAEKQSDHKLKVLKTDGGGEYVSNAFSEFCEAEGIVHEVIPPYTPQQNGSAKR 653

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT++NM RCM++G+ L
Sbjct: 654 RNRTIINMVRCMIRGKHL 671


>dbj|GAU46598.1| hypothetical protein TSUD_99480 [Trifolium subterraneum]
          Length = 1244

 Score =  151 bits (381), Expect(2) = 2e-61
 Identities = 70/135 (51%), Positives = 90/135 (66%), Gaps = 12/135 (8%)
 Frame = +2

Query: 221 EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
           +GK +   LWGE V TA ++LN C TKRL   TPEE WS  KP+VK+L++FGS+ +RHV 
Sbjct: 560 KGKHLPKELWGEAVATATYILNLCPTKRLNGITPEECWSKNKPSVKHLRVFGSIAYRHVS 619

Query: 401 DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDE----- 565
           DQ +RKLDDK   M+L+GYH TG YKLYDP+ K +V+SRDV+ DE K W+W   E     
Sbjct: 620 DQLRRKLDDKETTMILVGYHSTGGYKLYDPVNKNIVVSRDVVFDEMKEWDWNMHEKKSST 679

Query: 566 -------DSNKKIFP 589
                  + NK+I P
Sbjct: 680 SVMLEELEENKEIVP 694



 Score =  112 bits (281), Expect(2) = 2e-61
 Identities = 51/78 (65%), Positives = 61/78 (78%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +KS+VE+QSG  LK+LRTD GGEY S +FA  C+ EGI HEV  PYTPQ NG  ER
Sbjct: 487 VFKKFKSVVERQSGHKLKVLRTDGGGEYVSHDFAELCESEGIVHEVIPPYTPQQNGSVER 546

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT++NM RCM+KG+ L
Sbjct: 547 RNRTIMNMVRCMLKGKHL 564


>dbj|GAU26464.1| hypothetical protein TSUD_294300 [Trifolium subterraneum]
          Length = 1323

 Score =  158 bits (399), Expect(2) = 3e-61
 Identities = 74/119 (62%), Positives = 90/119 (75%)
 Frame = +2

Query: 224  GKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVPD 403
            GK +   LWGE VNTA +VLNRC TKRL + TPEE WS  KPNV +LK+FGS+ +RHV D
Sbjct: 668  GKHLPKELWGEAVNTACYVLNRCPTKRLNDVTPEECWSGNKPNVSHLKVFGSIAYRHVTD 727

Query: 404  QNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDEDSNKK 580
            Q + KLDDK++ M+L+GYH TG Y+LYDP+ K +VISRDVIVDE K W+W     SNKK
Sbjct: 728  QLRSKLDDKSEVMVLVGYHLTGGYRLYDPISKSMVISRDVIVDEMKEWDW----CSNKK 782



 Score =  105 bits (262), Expect(2) = 3e-61
 Identities = 47/78 (60%), Positives = 59/78 (75%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +K + EKQS   LK+L+TD GGEY S  F+ FC+ EGI HEV  PYTPQ NG AER
Sbjct: 594 VFKKFKVMAEKQSDNKLKVLKTDGGGEYVSNAFSEFCEAEGIVHEVIPPYTPQQNGSAER 653

Query: 183 RNRTVLNMARCMMKGREL 236
           RN+T++NM RCM++G+ L
Sbjct: 654 RNKTIMNMVRCMIRGKHL 671


>dbj|GAU47720.1| hypothetical protein TSUD_285070 [Trifolium subterraneum]
          Length = 1194

 Score =  155 bits (393), Expect(2) = 3e-61
 Identities = 67/115 (58%), Positives = 87/115 (75%)
 Frame = +2

Query: 221  EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
            +GK +   LWGE + TA ++LN C TKRL   TPEE WS  KP+VK+L++FGS+ ++HVP
Sbjct: 661  KGKHLPKELWGEAIATATYILNLCPTKRLNGITPEECWSKNKPSVKHLRVFGSIAYKHVP 720

Query: 401  DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDE 565
            DQ++RKLDDKA  M+L+GYH TG YKLYDP+ K VV+SRDV+ DE K W+W   E
Sbjct: 721  DQSRRKLDDKAITMILVGYHSTGGYKLYDPVNKNVVVSRDVVFDEMKEWDWNMQE 775



 Score =  107 bits (268), Expect(2) = 3e-61
 Identities = 49/78 (62%), Positives = 60/78 (76%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +KS+ E+QSG  LK+LRT+ GGEY S +FA  C+ EGI HEV  PYTPQ NG AE 
Sbjct: 588 VFKKFKSVEERQSGHKLKVLRTNGGGEYVSHDFAELCESEGIVHEVIPPYTPQQNGSAEM 647

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT++NM RCM+KG+ L
Sbjct: 648 RNRTIMNMVRCMLKGKHL 665


>dbj|GAU30479.1| hypothetical protein TSUD_18590 [Trifolium subterraneum]
          Length = 1115

 Score =  150 bits (379), Expect(2) = 3e-61
 Identities = 66/115 (57%), Positives = 84/115 (73%)
 Frame = +2

Query: 221 EGKRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVP 400
           +GK +   LWGE V TA ++LN C TKRL   TPEE WS  KP+VK+L++FG + ++HVP
Sbjct: 602 KGKHLPKELWGEAVATATYILNLCPTKRLNGITPEECWSKNKPSVKHLRVFGLIAYKHVP 661

Query: 401 DQNKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGWEWKNDE 565
           DQ +RKLDDKA  M+L+GYH T  YKLYDP+ K VV+SRDV+ DE K W+W   E
Sbjct: 662 DQLRRKLDDKATTMILVGYHSTSGYKLYDPINKNVVVSRDVVFDEMKEWDWNLHE 716



 Score =  113 bits (282), Expect(2) = 3e-61
 Identities = 51/78 (65%), Positives = 62/78 (79%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           VFK +KS+VE+QSG  LK+LRTD GGEY S +FA  C+ EGI HEV  PYTPQ NG AER
Sbjct: 529 VFKKFKSVVERQSGHKLKVLRTDGGGEYVSHDFAELCESEGIVHEVIPPYTPQQNGSAER 588

Query: 183 RNRTVLNMARCMMKGREL 236
           RN+T++NM RCM+KG+ L
Sbjct: 589 RNKTIMNMVRCMLKGKHL 606


>gb|KYP68287.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1340

 Score =  147 bits (370), Expect(2) = 4e-61
 Identities = 66/115 (57%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
 Frame = +2

Query: 227 KRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVPDQ 406
           K + H  WGE   TAV+VLNRC TKRL +  PEEAWS  KP+VK+L+IFGSLC+RHVPDQ
Sbjct: 642 KNLPHSFWGEAAMTAVYVLNRCPTKRLGSMVPEEAWSGSKPSVKHLRIFGSLCYRHVPDQ 701

Query: 407 NKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGW-EWKNDED 568
            ++KLDDK++AM+ +GY+ TG+YKL++P  ++V+ SRDV  DES  W E+++  D
Sbjct: 702 RRKKLDDKSEAMIFVGYNSTGSYKLFNPKNQQVLFSRDVYFDESSSWAEFQSTSD 756



 Score =  116 bits (290), Expect(2) = 4e-61
 Identities = 54/78 (69%), Positives = 64/78 (82%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           +FK +K+LVEKQSG  +KILRTD GGE+TS EF  FC + GI HEVTAPYTPQHNG+AER
Sbjct: 567 IFKDFKALVEKQSGKCIKILRTDGGGEFTSGEFEGFCKEHGIVHEVTAPYTPQHNGIAER 626

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT+LNM R M+K + L
Sbjct: 627 RNRTILNMVRSMLKEKNL 644


>gb|KYP31826.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1340

 Score =  147 bits (370), Expect(2) = 4e-61
 Identities = 66/115 (57%), Positives = 89/115 (77%), Gaps = 1/115 (0%)
 Frame = +2

Query: 227 KRVTHRLWGEVVNTAVFVLNRCSTKRLLNKTPEEAWSDVKPNVKNLKIFGSLCFRHVPDQ 406
           K + H  WGE   TAV+VLNRC TKRL +  PEEAWS  KP+VK+L+IFGSLC+RHVPDQ
Sbjct: 642 KNLPHSFWGEAAMTAVYVLNRCPTKRLGSMVPEEAWSGSKPSVKHLRIFGSLCYRHVPDQ 701

Query: 407 NKRKLDDKAQAMMLIGYHPTGAYKLYDPLKKKVVISRDVIVDESKGW-EWKNDED 568
            ++KLDDK++AM+ +GY+ TG+YKL++P  ++V+ SRDV  DES  W E+++  D
Sbjct: 702 RRKKLDDKSEAMIFVGYNSTGSYKLFNPKNQQVLFSRDVYFDESSSWAEFQSTSD 756



 Score =  116 bits (290), Expect(2) = 4e-61
 Identities = 54/78 (69%), Positives = 64/78 (82%)
 Frame = +3

Query: 3   VFKTWKSLVEKQSGIGLKILRTDEGGEYTSTEFARFCDDEGIAHEVTAPYTPQHNGVAER 182
           +FK +K+LVEKQSG  +KILRTD GGE+TS EF  FC + GI HEVTAPYTPQHNG+AER
Sbjct: 567 IFKDFKALVEKQSGKCIKILRTDGGGEFTSGEFEGFCKEHGIVHEVTAPYTPQHNGIAER 626

Query: 183 RNRTVLNMARCMMKGREL 236
           RNRT+LNM R M+K + L
Sbjct: 627 RNRTILNMVRSMLKEKNL 644