BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00026437
         (953 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            246   4e-86
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   248   4e-86
gb|PNX71231.1| copia-type polyprotein, partial [Trifolium pratense]   241   9e-85
gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposo...   273   1e-84
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   245   2e-84
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   245   7e-84
dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subt...   239   8e-84
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   245   9e-84
dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subt...   229   3e-82
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   236   1e-81
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   237   5e-81
gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]            232   7e-81
gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinen...   235   2e-80
dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subt...   233   6e-80
dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subt...   231   1e-79
dbj|GAU22946.1| hypothetical protein TSUD_326740 [Trifolium subt...   230   1e-78
gb|PNX95763.1| retrotransposon-related protein, partial [Trifoli...   244   1e-77
gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]   220   1e-77
dbj|GAU31303.1| hypothetical protein TSUD_315120 [Trifolium subt...   221   1e-77
dbj|GAU47763.1| hypothetical protein TSUD_193000 [Trifolium subt...   230   2e-77

>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  246 bits (627), Expect(4) = 4e-86
 Identities = 114/178 (64%), Positives = 144/178 (80%)
 Frame = -2

Query: 724  LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
            L+GKQHRD++SK+S WRAS KL+L+H++ICG I P+SNS+KRYF+SFIDDFT   W+YFL
Sbjct: 472  LIGKQHRDSMSKKSLWRASNKLQLVHADICGPIKPESNSNKRYFLSFIDDFTRKTWIYFL 531

Query: 544  SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
             EK  A   FK FK  +EKE+   I+ LRTDRGGEFNS EF++FC   GI RQ  AAYTP
Sbjct: 532  HEKSEAFAMFKNFKAYVEKESGAYITSLRTDRGGEFNSNEFEEFCKVQGISRQLTAAYTP 591

Query: 364  QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
            QQNGVA+RKNRT+MNMVRS+L E K+PK FWPEAV+ S ++LNRCP +++++ TPE+A
Sbjct: 592  QQNGVAERKNRTIMNMVRSMLVEKKVPKMFWPEAVKWSVHILNRCPTLAVQNKTPEEA 649



 Score = 58.5 bits (140), Expect(4) = 4e-86
 Identities = 21/37 (56%), Positives = 30/37 (81%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           KP++ Y RVFGC+AH H+PD +R K+D+KS +C+ LG
Sbjct: 654 KPTINYFRVFGCVAHAHIPDQKRSKLDDKSKKCVLLG 690



 Score = 51.2 bits (121), Expect(4) = 4e-86
 Identities = 27/69 (39%), Positives = 42/69 (60%)
 Frame = -1

Query: 953 LVQSLS*GKRIDNHVISGSPVISGCLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEG 774
           +++++  G ++   V S  P  S C Q  SE+ + LWH R+GHLS++GL  L  K MV G
Sbjct: 398 IMETIMSGNKMFCLVASMMPNESTCFQNVSENESYLWHCRFGHLSYQGLRTLFYKKMVNG 457

Query: 773 FPTLKEPVK 747
            P+++ P K
Sbjct: 458 LPSIQIPKK 466



 Score = 35.0 bits (79), Expect(4) = 4e-86
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = -3

Query: 84  KMHFLRISEESKAYRLHDTIKKKITISK 1
           K   L +S+ESKAY+L+D + KKI ISK
Sbjct: 685 KCVLLGVSDESKAYKLYDPVSKKIIISK 712


>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  248 bits (634), Expect(4) = 4e-86
 Identities = 115/176 (65%), Positives = 141/176 (80%)
 Frame = -2

Query: 718 GKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFLSE 539
           GKQHRD I K+S WRA++KLELIH+++CG ISP SNS+KRY + FIDD++   WVYFL E
Sbjct: 470 GKQHRDPIPKKSNWRATQKLELIHADVCGPISPSSNSNKRYILLFIDDYSRKSWVYFLVE 529

Query: 538 KLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTPQQ 359
           K  AL +FK FK M+EKE    I CLRTDRGGEFNS EF+ FC ++G++RQ   AYTPQQ
Sbjct: 530 KSEALNSFKCFKTMVEKEAEMAIKCLRTDRGGEFNSNEFNDFCKQSGVKRQLTTAYTPQQ 589

Query: 358 NGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
           NGVA+RKNRTVMNMVRSLL +  +PK FWPEAV  + YVLNRCP +++KD+TPE+A
Sbjct: 590 NGVAERKNRTVMNMVRSLLFDKNIPKTFWPEAVNWTIYVLNRCPTLAVKDVTPEEA 645



 Score = 59.3 bits (142), Expect(4) = 4e-86
 Identities = 23/37 (62%), Positives = 32/37 (86%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           KPSV + RVFGCIAH+HVP+A+R K+D++S+ C+ LG
Sbjct: 650 KPSVNHFRVFGCIAHVHVPEAKRTKLDSRSITCVLLG 686



 Score = 51.2 bits (121), Expect(4) = 4e-86
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = -1

Query: 881 CLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFP 768
           C    ++DL+ LWH+RYGHLS+KGL  L  K MV G P
Sbjct: 418 CFHTKAQDLSHLWHRRYGHLSYKGLRTLLYKNMVRGLP 455



 Score = 31.6 bits (70), Expect(4) = 4e-86
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 72  LRISEESKAYRLHDTIKKKITISK 1
           L +SEESK YR  D + KKI +S+
Sbjct: 685 LGVSEESKGYRFFDPVSKKIVVSR 708


>gb|PNX71231.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1017

 Score =  241 bits (615), Expect(4) = 9e-85
 Identities = 116/178 (65%), Positives = 139/178 (78%)
 Frame = -2

Query: 724 LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
           L GKQHRD IS++S WRAS KLEL+H++ICG ISP S  +KRYFI FIDD++   WVYFL
Sbjct: 167 LKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFL 226

Query: 544 SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
           + K  A  TFK FK ++EKET   I CLRTDRGGEF S EF ++C  NGI+RQ  AAYTP
Sbjct: 227 AYKSDAFTTFKLFKALVEKETDLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTAAYTP 286

Query: 364 QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
           QQNGVA+RKNRTVMNMVRSLL E  +P++FW EAV  +FYVLNRCP  S+K++TP +A
Sbjct: 287 QQNGVAERKNRTVMNMVRSLLVEKNVPRKFWAEAVNWAFYVLNRCPTSSVKEMTPVEA 344



 Score = 58.2 bits (139), Expect(4) = 9e-85
 Identities = 25/42 (59%), Positives = 30/42 (71%)
 Frame = -1

Query: 881 CLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLKE 756
           C QVT+E +A LWH+R+GHLS+KGL  L  KGMV G P   E
Sbjct: 117 CFQVTTEYVAHLWHRRFGHLSYKGLKTLQTKGMVRGLPCFSE 158



 Score = 54.3 bits (129), Expect(4) = 9e-85
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           KPSV +LRVFGCIA+ HVPDA+R K+++KS  C+  G
Sbjct: 349 KPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFG 385



 Score = 32.3 bits (72), Expect(4) = 9e-85
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = -3

Query: 66  ISEESKAYRLHDTIKKKITISK 1
           +SEESKAYRL+D   K+I IS+
Sbjct: 386 VSEESKAYRLYDPTSKRIIISR 407


>gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 508

 Score =  273 bits (697), Expect = 1e-84
 Identities = 140/262 (53%), Positives = 190/262 (72%), Gaps = 9/262 (3%)
 Frame = -2

Query: 949 CKVCHKEKGLIITSFL-DPLSFLVAYRLLVKT*LNYGTRGMATSVIKG*FFSIKREWWKV 773
           C+V HKEKGL++TS++ +   F +  +L++       T  + ++ +    +         
Sbjct: 50  CRVYHKEKGLLMTSYMANNRMFPIKAKLVITEAACIQTSNVDSTEMWHKRYGHLSYGGLK 109

Query: 772 FLLSRSL*SLEPTLRLL--------VGKQHRDAISKQSKWRASRKLELIHSNICGTISPK 617
            L  +++    P L+ +        VGKQHRDAISKQS WRA+R+LELIHS+ICG  +P 
Sbjct: 110 LLNQKAMVKGLPELKEMDKVCPECAVGKQHRDAISKQSTWRATRRLELIHSDICGPSTPT 169

Query: 616 SNSHKRYFISFIDDFT*MGWVYFLSEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEF 437
           SNS++RYFI+FIDDF+   WV+FL EK  A  TFK+F++M+EKE+ CVISCLRTDRGGEF
Sbjct: 170 SNSNRRYFITFIDDFSRKTWVFFLCEKAEAFETFKRFRLMVEKESNCVISCLRTDRGGEF 229

Query: 436 NSKEFDKFCSENGIRRQFRAAYTPQQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVR 257
           NS +F++FC+ NGIRRQ  AAYTPQQNGVA+RKNRT+M+MVR++L EAK+ K FWPEAVR
Sbjct: 230 NSNDFNEFCTMNGIRRQLTAAYTPQQNGVAERKNRTIMDMVRTMLCEAKIHKSFWPEAVR 289

Query: 256 LSFYVLNRCPAVSLKDITPEKA 191
            + Y+LNRCP V++KD+TPE+A
Sbjct: 290 WTVYLLNRCPTVAVKDLTPEEA 311



 Score = 58.9 bits (141), Expect = 6e-06
 Identities = 23/37 (62%), Positives = 33/37 (89%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           KPSV +L+VFGCIA++H+ DA R+K+D+KS +C+FLG
Sbjct: 316 KPSVRHLKVFGCIAYVHIADANRKKLDDKSSKCVFLG 352


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  245 bits (626), Expect(3) = 2e-84
 Identities = 116/178 (65%), Positives = 144/178 (80%)
 Frame = -2

Query: 724  LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
            +VGKQHR++I K+S WRAS +L+LIHS+ICG I P SN+ KRY ISFIDD++   WVYFL
Sbjct: 469  MVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNNRKRYLISFIDDYSRKTWVYFL 528

Query: 544  SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
            +EK  A  TFK FK ++EKET   I CLRTDRGGEF S+EF+ FCS +GI RQ  AAYTP
Sbjct: 529  NEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISRQLTAAYTP 588

Query: 364  QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
            QQNGVA+RKNRT+MNMVRS+LSE ++PK FWPEAV  S ++LNR P +++KD+TPE+A
Sbjct: 589  QQNGVAERKNRTIMNMVRSMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEA 646



 Score = 60.8 bits (146), Expect(3) = 2e-84
 Identities = 23/37 (62%), Positives = 32/37 (86%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           KP V Y +VFGCIAH+H+P+A+R+K+DNKS +C+ LG
Sbjct: 651 KPVVHYFKVFGCIAHVHIPEAKRKKLDNKSYKCVLLG 687



 Score = 57.8 bits (138), Expect(3) = 2e-84
 Identities = 27/50 (54%), Positives = 29/50 (58%)
 Frame = -1

Query: 896 PVISGCLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLKEPVK 747
           P  S C Q  SED   LWH RYGHLS KGL  L  + MV+G P  K P K
Sbjct: 414 PQASACFQTVSEDNTHLWHCRYGHLSFKGLKTLQYRNMVKGLPDFKMPSK 463


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  245 bits (626), Expect(3) = 7e-84
 Identities = 117/178 (65%), Positives = 143/178 (80%)
 Frame = -2

Query: 724 LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
           +VGKQHR++I K+S WRAS +L+LIHS+ICG I P SNS KRY ISFIDD++   WVYFL
Sbjct: 190 MVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSRKRYLISFIDDYSRKTWVYFL 249

Query: 544 SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
            EK  A  TFK FK ++EKET   I CLRTDRGGEF S+EF+ FCS +GI RQ  AAYTP
Sbjct: 250 YEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISRQLTAAYTP 309

Query: 364 QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
           QQNGVA+RKNRT+MNMVRS+LSE ++PK FWPEAV  S ++LNR P +++KD+TPE+A
Sbjct: 310 QQNGVAERKNRTIMNMVRSMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEA 367



 Score = 62.8 bits (151), Expect(3) = 7e-84
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLGSVKNLK 48
           KP+V Y RVFGCIAH+H+P+A+R+K+D+KS +C+ LG  K  K
Sbjct: 372 KPAVHYFRVFGCIAHVHIPEAKRKKLDDKSYKCVLLGVSKESK 414



 Score = 53.9 bits (128), Expect(3) = 7e-84
 Identities = 25/46 (54%), Positives = 27/46 (58%)
 Frame = -1

Query: 896 PVISGCLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLK 759
           P  S C Q  SED   LWH RYGHLS KGL  L  + MV+G P  K
Sbjct: 135 PQASACFQTVSEDNTHLWHCRYGHLSFKGLRTLQYRKMVKGLPDFK 180


>dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subterraneum]
          Length = 1980

 Score =  239 bits (610), Expect(4) = 8e-84
 Identities = 115/178 (64%), Positives = 138/178 (77%)
 Frame = -2

Query: 724  LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
            L GKQHRD IS++S WRAS KLEL+H++ICG ISP S  +KRYFI FIDD++   WVYFL
Sbjct: 471  LKGKQHRDVISRRSTWRASEKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFL 530

Query: 544  SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
            + K  A  TFK FK ++EKET   I CLRTDRGGEF S EF ++C  NGI+RQ   AYTP
Sbjct: 531  AYKSDAFTTFKLFKALVEKETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTP 590

Query: 364  QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
            QQNGVA+RKNRTVMNMVRSLL E  +P++FW EAV  +FYVLNRCP  S+K++TP +A
Sbjct: 591  QQNGVAERKNRTVMNMVRSLLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEA 648



 Score = 57.0 bits (136), Expect(4) = 8e-84
 Identities = 23/39 (58%), Positives = 30/39 (76%)
 Frame = -1

Query: 881 CLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPT 765
           C QVT++D+A LWH+R+GHLS+KGL  L  K MV G P+
Sbjct: 421 CFQVTTDDVAHLWHRRFGHLSYKGLKTLQTKNMVRGLPS 459



 Score = 54.3 bits (129), Expect(4) = 8e-84
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           KPSV +LRVFGCIA+ HVPDA+R K+++KS  C+  G
Sbjct: 653 KPSVGHLRVFGCIAYAHVPDARRTKLEDKSRCCVLFG 689



 Score = 32.3 bits (72), Expect(4) = 8e-84
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = -3

Query: 66  ISEESKAYRLHDTIKKKITISK 1
           +SEESKAYRL+D   K+I IS+
Sbjct: 690 VSEESKAYRLYDPTSKRIIISR 711


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  245 bits (626), Expect(3) = 9e-84
 Identities = 117/178 (65%), Positives = 143/178 (80%)
 Frame = -2

Query: 724  LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
            +VGKQHR++I K+S WRAS +L+LIHS+ICG I P SNS KRY ISFIDD++   WVYFL
Sbjct: 471  MVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSRKRYLISFIDDYSRKTWVYFL 530

Query: 544  SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
             EK  A  TFK FK ++EKET   I CLRTDRGGEF S+EF+ FCS +GI RQ  AAYTP
Sbjct: 531  YEKSQAFTTFKSFKCLVEKETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISRQLTAAYTP 590

Query: 364  QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
            QQNGVA+RKNRT+MNMVRS+LSE ++PK FWPEAV  S ++LNR P +++KD+TPE+A
Sbjct: 591  QQNGVAERKNRTIMNMVRSMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEA 648



 Score = 62.8 bits (151), Expect(3) = 9e-84
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLGSVKNLK 48
           KP+V Y RVFGCIAH+H+P+A+R+K+D+KS +C+ LG  K  K
Sbjct: 653 KPAVHYFRVFGCIAHVHIPEAKRKKLDDKSYKCVLLGVSKESK 695



 Score = 53.5 bits (127), Expect(3) = 9e-84
 Identities = 25/46 (54%), Positives = 27/46 (58%)
 Frame = -1

Query: 896 PVISGCLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLK 759
           P  S C Q  SED   LWH RYGHLS KGL  L  + MV+G P  K
Sbjct: 416 PQASACFQTVSEDNTHLWHCRYGHLSFKGLRSLQYRKMVKGLPDFK 461


>dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subterraneum]
          Length = 1608

 Score =  229 bits (584), Expect(4) = 3e-82
 Identities = 106/178 (59%), Positives = 138/178 (77%)
 Frame = -2

Query: 724  LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
            L+GKQHR++I K+S WRAS+KL+L+H++ICG I+P SNS+KRY +SFIDDFT   W+YFL
Sbjct: 474  LIGKQHRESIPKKSSWRASKKLQLVHADICGPITPSSNSNKRYILSFIDDFTRKAWIYFL 533

Query: 544  SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
             EK  A   FK FK  +EKE    I+CLRTDRGGEF S EF++FC + GI RQ  A+YTP
Sbjct: 534  HEKSEAFGRFKNFKACVEKEVGAFITCLRTDRGGEFISNEFEEFCKDQGICRQLTASYTP 593

Query: 364  QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
            QQNGVA+RKNRT+MN VR++L+E ++P+ FWPEAV+   +V NR P  ++  ITPE+A
Sbjct: 594  QQNGVAERKNRTIMNAVRAVLNERQVPRVFWPEAVKWCVHVQNRSPTSAVDHITPEEA 651



 Score = 62.0 bits (149), Expect(4) = 3e-82
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           +PSV Y R+FGC+AH HVPD +R K+D+KS RC+FLG
Sbjct: 656 RPSVDYFRIFGCVAHAHVPDQKRSKLDDKSKRCVFLG 692



 Score = 52.8 bits (125), Expect(4) = 3e-82
 Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
 Frame = -1

Query: 932 GKRIDNHVISGSP-VISGCLQ--VTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTL 762
           G R+    +S +P   S CLQ  + SE   +LWH R+GHL++KGL  L+ K MV G P+L
Sbjct: 404 GNRMFYLTVSAAPNKHSMCLQAEMMSEKETQLWHSRFGHLNYKGLNTLSNKKMVIGLPSL 463

Query: 761 KEPVK 747
           K P K
Sbjct: 464 KSPKK 468



 Score = 33.5 bits (75), Expect(4) = 3e-82
 Identities = 13/25 (52%), Positives = 21/25 (84%)
 Frame = -3

Query: 75  FLRISEESKAYRLHDTIKKKITISK 1
           FL +S+ESKAY+L D I+KK+ +++
Sbjct: 690 FLGVSDESKAYKLFDPIEKKVIVNR 714


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  236 bits (603), Expect(3) = 1e-81
 Identities = 112/176 (63%), Positives = 138/176 (78%)
 Frame = -2

Query: 718 GKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFLSE 539
           GKQHRD I K+S+WRA +KLELIH++ICG I P SNS KRYF+ FIDD+T   W+YFL+E
Sbjct: 166 GKQHRDPIPKKSQWRAKQKLELIHADICGPIIPSSNSQKRYFLCFIDDYTRKAWIYFLTE 225

Query: 538 KLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTPQQ 359
           K  A   F+ FK ++EKE+  +I CLRTDRGGEF S EF++FC + GI+RQ   AYTPQQ
Sbjct: 226 KSEAFHYFQCFKNLVEKESGLMIKCLRTDRGGEFTSSEFNEFCQKTGIKRQLTTAYTPQQ 285

Query: 358 NGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
           NGVA+RKNRT+MN+VR+LLSE KLPK FWPEAV    YVLNR P + +K+ TPE+A
Sbjct: 286 NGVAERKNRTIMNLVRTLLSEKKLPKSFWPEAVNWVAYVLNRSPTLVVKNQTPEEA 341



 Score = 59.3 bits (142), Expect(3) = 1e-81
 Identities = 24/43 (55%), Positives = 32/43 (74%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLGSVKNLK 48
           KPSV + RVFGC+ H+HVPDA R K++NKS +C+ LG  +  K
Sbjct: 346 KPSVEHFRVFGCVTHVHVPDAGRTKLENKSCKCVLLGMSEESK 388



 Score = 58.5 bits (140), Expect(3) = 1e-81
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = -1

Query: 881 CLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPT 765
           C  ++++DL+ LWH+RY HLSHKGL +L  KGMV G P+
Sbjct: 113 CFHISTQDLSSLWHRRYAHLSHKGLRILQSKGMVRGLPS 151


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  237 bits (605), Expect(3) = 5e-81
 Identities = 112/178 (62%), Positives = 142/178 (79%)
 Frame = -2

Query: 724  LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
            LVGKQ RD+I K S+WRAS++L+L+H++ICG I+P SNS KRY +SFIDDF+   WVYFL
Sbjct: 482  LVGKQSRDSIPKSSQWRASQRLQLVHADICGPITPTSNSDKRYVLSFIDDFSRKMWVYFL 541

Query: 544  SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
            +EK  A   FK++K ++EKE    I CLRTDRGGEF S EF++FC  NGI+RQ  AAYTP
Sbjct: 542  TEKSQAFTMFKRYKSLVEKEIGFPICCLRTDRGGEFTSNEFNEFCQSNGIKRQLTAAYTP 601

Query: 364  QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
            QQNGVA+R+NRTVMN+VRS+LSE K+PK FWPEAV    +VLNR P  +++D+TPE+A
Sbjct: 602  QQNGVAERRNRTVMNLVRSILSEKKIPKSFWPEAVNWVTHVLNRSPTQAVQDVTPEEA 659



 Score = 61.6 bits (148), Expect(3) = 5e-81
 Identities = 24/43 (55%), Positives = 34/43 (79%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLGSVKNLK 48
           KP+V Y RVFGC+AH+H+PDA+R K+D+KS +C+ LG  +  K
Sbjct: 664 KPNVGYFRVFGCVAHVHIPDAKRTKLDDKSCKCVLLGVSEETK 706



 Score = 53.5 bits (127), Expect(3) = 5e-81
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = -1

Query: 887 SGCLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLK 759
           S C+Q +S+DL+ LWH RY HL++KGL  L+ + MV+G P +K
Sbjct: 430 STCMQASSDDLSHLWHCRYSHLNYKGLKTLHYRKMVKGLPQIK 472


>gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]
          Length = 1172

 Score =  232 bits (592), Expect(3) = 7e-81
 Identities = 110/177 (62%), Positives = 138/177 (77%)
 Frame = -2

Query: 724 LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
           LVGKQHR++I K S  ++S++LEL+HS+ICG I+P SNS  RYF++FIDD++   W YFL
Sbjct: 458 LVGKQHRESIPKTSNLKSSKRLELVHSDICGPITPASNSDNRYFLTFIDDYSRKTWAYFL 517

Query: 544 SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
             K  AL  FKKFK M+EKET   I CLRTDRGGEFNS EF+ FC  NGI+RQ  AAYTP
Sbjct: 518 KNKSSALEYFKKFKNMVEKETGESICCLRTDRGGEFNSNEFNNFCEVNGIKRQVTAAYTP 577

Query: 364 QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEK 194
           QQNG+A+RKNRT+M+MVRS++S   +PK FWPEAV  + YVLNR PA ++ D+TPE+
Sbjct: 578 QQNGIAKRKNRTIMDMVRSMISGKDIPKVFWPEAVNWAIYVLNRSPAAAIPDVTPEE 634



 Score = 66.2 bits (160), Expect(3) = 7e-81
 Identities = 29/50 (58%), Positives = 37/50 (74%)
 Frame = -1

Query: 197 ESMQNERKPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLGSVKNLK 48
           E   +  KP+V + R+FGCIA+ HVPDAQRRK D+KS++CIFLG  K  K
Sbjct: 633 EEFWSSSKPTVKHFRIFGCIAYTHVPDAQRRKFDDKSVKCIFLGISKESK 682



 Score = 53.5 bits (127), Expect(3) = 7e-81
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = -1

Query: 881 CLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLKE 756
           C Q  SED++ LWH RYGHL+ KGL  L QK MV+  P ++E
Sbjct: 408 CFQTKSEDISYLWHCRYGHLNFKGLQTLQQKNMVKDLPKIEE 449


>gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1363

 Score =  235 bits (600), Expect(4) = 2e-80
 Identities = 112/177 (63%), Positives = 135/177 (76%)
 Frame = -2

Query: 724  LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
            L GKQHR+ I K+S WRA+++LELIH+++CG ISP SNS K+Y +  IDD++   W YFL
Sbjct: 532  LKGKQHREPIPKRSTWRATQRLELIHADLCGPISPISNSGKKYVLCLIDDYSRKAWSYFL 591

Query: 544  SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
            +EK      FK FKI++EKET   I CLRTDRGGEF S EF+ FC ENGIRRQ   AYTP
Sbjct: 592  NEKSETFAVFKFFKILVEKETSLAIKCLRTDRGGEFTSAEFNSFCKENGIRRQLTTAYTP 651

Query: 364  QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEK 194
            QQNGVA+RKNRTVMN VR +L E  +PK FWPEAV+ + YVLNRCP V+LKD TPE+
Sbjct: 652  QQNGVAERKNRTVMNSVRCMLFEKGIPKPFWPEAVKWTVYVLNRCPTVALKDTTPEE 708



 Score = 56.6 bits (135), Expect(4) = 2e-80
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           KPSV +LRVFGC+ H+HVPD +R K++NKS   +FLG
Sbjct: 714 KPSVEHLRVFGCVCHVHVPDVKRTKLENKSTSGVFLG 750



 Score = 47.0 bits (110), Expect(4) = 2e-80
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = -1

Query: 881 CLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTL 762
           C   T++DL  LWH R GH+S+ GL  L +K MV G P L
Sbjct: 482 CFNTTTQDLTHLWHCRLGHISNTGLQTLQRKKMVHGLPQL 521



 Score = 32.3 bits (72), Expect(4) = 2e-80
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -3

Query: 75  FLRISEESKAYRLHDTIKKKITISK 1
           FL IS+ESK YR++D + KKI  S+
Sbjct: 748 FLGISDESKGYRIYDPLTKKIMTSR 772


>dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subterraneum]
          Length = 1302

 Score =  233 bits (594), Expect(3) = 6e-80
 Identities = 109/177 (61%), Positives = 138/177 (77%)
 Frame = -2

Query: 724 LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
           L GKQHR++I K S W++S++LELIHS+ICG I+P SNS+KRY ++FIDD++   WVY+L
Sbjct: 463 LRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFIDDYSRKIWVYYL 522

Query: 544 SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
           S K  A   FKKFK M+EKET   I CLRTDRGGEFNS EF +FC  NGI+RQ  AAYTP
Sbjct: 523 SNKSDAFECFKKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGIKRQLTAAYTP 582

Query: 364 QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEK 194
           QQNG+A+RKNRT+M M+R +L+   +PK FWPEAV  + YVLNR P  ++KD+TPE+
Sbjct: 583 QQNGIAERKNRTIMEMIRCMLAGKSVPKAFWPEAVNWAIYVLNRSPTAAIKDMTPEE 639



 Score = 61.6 bits (148), Expect(3) = 6e-80
 Identities = 24/50 (48%), Positives = 37/50 (74%)
 Frame = -1

Query: 197 ESMQNERKPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLGSVKNLK 48
           E + +  KPSV + ++FGCIA+ H PDAQR+K+D+KS++C+F G  +  K
Sbjct: 638 EEVWSSTKPSVKHFKIFGCIAYAHAPDAQRKKLDDKSVKCVFFGISEETK 687



 Score = 54.3 bits (129), Expect(3) = 6e-80
 Identities = 24/42 (57%), Positives = 29/42 (69%)
 Frame = -1

Query: 881 CLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLKE 756
           CLQ  +ED+ +LWH RYGHL+ KGL  L QK MV G P  +E
Sbjct: 413 CLQANTEDITQLWHCRYGHLNIKGLQNLQQKNMVIGLPKFEE 454


>dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  231 bits (590), Expect(3) = 1e-79
 Identities = 108/177 (61%), Positives = 137/177 (77%)
 Frame = -2

Query: 724 LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
           L GKQHR++I K S W++S++LELIHS+ICG I+P SNS+KRY ++FIDD++   W Y+L
Sbjct: 463 LRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFIDDYSRKIWAYYL 522

Query: 544 SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
           S K  A   FKKFK M+EKET   I CLRTDRGGEFNS EF +FC  NGI+RQ  AAYTP
Sbjct: 523 SNKSDAFECFKKFKCMVEKETSETICCLRTDRGGEFNSDEFKEFCEVNGIKRQLTAAYTP 582

Query: 364 QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEK 194
           QQNG+A+RKNRT+M M+R +L+   +PK FWPEAV  + YVLNR P  ++KD+TPE+
Sbjct: 583 QQNGIAERKNRTIMEMIRCMLAGKSVPKAFWPEAVNWAIYVLNRSPTAAIKDMTPEE 639



 Score = 63.2 bits (152), Expect(3) = 1e-79
 Identities = 25/50 (50%), Positives = 38/50 (76%)
 Frame = -1

Query: 197 ESMQNERKPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLGSVKNLK 48
           E + +  KPSV + ++FGCIA+ HVPDAQR+K+D+KS++C+F G  +  K
Sbjct: 638 EEVWSSTKPSVKHFKIFGCIAYAHVPDAQRKKLDDKSVKCVFFGISEETK 687



 Score = 53.1 bits (126), Expect(3) = 1e-79
 Identities = 24/42 (57%), Positives = 28/42 (66%)
 Frame = -1

Query: 881 CLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLKE 756
           CLQ   ED+ +LWH RYGHL+ KGL  L QK MV G P  +E
Sbjct: 413 CLQANIEDITQLWHCRYGHLNIKGLQNLQQKNMVIGLPKFEE 454


>dbj|GAU22946.1| hypothetical protein TSUD_326740 [Trifolium subterraneum]
          Length = 1222

 Score =  230 bits (587), Expect(4) = 1e-78
 Identities = 108/176 (61%), Positives = 138/176 (78%)
 Frame = -2

Query: 718 GKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFLSE 539
           GKQHR+AI K+S WRAS KLEL+HS+ICG I+P+SN  KRYFI+FI+D T   WVYFL+E
Sbjct: 400 GKQHREAIPKRSLWRASAKLELVHSDICGPITPESNGKKRYFITFINDLTRKTWVYFLNE 459

Query: 538 KLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTPQQ 359
           K  A   F+KFK+MIE  T   I  LRTD GGE+ S  F++FC   GIRRQ  A+YTPQQ
Sbjct: 460 KSEAFSVFQKFKVMIENATQHKIQSLRTDGGGEYTSTIFNEFCGSQGIRRQLTASYTPQQ 519

Query: 358 NGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
           NGV++RKNRT++NMVRS+L + K+PK+FWP+AV  S ++LNRCP  ++KD+TPE+A
Sbjct: 520 NGVSERKNRTILNMVRSMLDDKKVPKKFWPKAVNWSVHILNRCPTFAVKDMTPEEA 575



 Score = 53.9 bits (128), Expect(4) = 1e-78
 Identities = 23/47 (48%), Positives = 32/47 (68%)
 Frame = -1

Query: 893 VISGCLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLKEP 753
           ++  C + T  +  +LWH+RYGHLS+KGL +L  K MV G P +KEP
Sbjct: 344 IVPKCFKTTHSNENQLWHQRYGHLSYKGLGVLANKKMVLGLPCVKEP 390



 Score = 48.1 bits (113), Expect(4) = 1e-78
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           K  V++ +VFGCIA++H+PD  R+K D+KS  CI LG
Sbjct: 580 KRYVSHFKVFGCIAYVHIPDNLRKKFDDKSYVCILLG 616



 Score = 33.1 bits (74), Expect(4) = 1e-78
 Identities = 15/24 (62%), Positives = 19/24 (79%)
 Frame = -3

Query: 72  LRISEESKAYRLHDTIKKKITISK 1
           L IS+ESKAY+L+D  K KI +SK
Sbjct: 615 LGISDESKAYKLYDPAKAKIVVSK 638


>gb|PNX95763.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1327

 Score =  244 bits (622), Expect(3) = 1e-77
 Identities = 119/200 (59%), Positives = 150/200 (75%), Gaps = 3/200 (1%)
 Frame = -2

Query: 724  LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
            LVGKQHRD I K++ WRA+ KL+L+HS+ICG ISP SNS+KRY +SFIDDFT   W+YFL
Sbjct: 470  LVGKQHRDPIPKRNLWRATHKLQLVHSDICGPISPISNSNKRYILSFIDDFTRKTWIYFL 529

Query: 544  SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
            ++K  AL  FK FK   EKE    I CLRTDRGGE+NSKEF +FCS +GI RQ  AAYTP
Sbjct: 530  NQKSEALEAFKGFKTWTEKEAGTSIKCLRTDRGGEYNSKEFTEFCSTHGINRQLTAAYTP 589

Query: 364  QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA-- 191
            QQNGVA+RKNRT+MNMVRS+LSE ++PK+FW EA   S ++LNRCP  +L+++TP++A  
Sbjct: 590  QQNGVAERKNRTIMNMVRSMLSEKQMPKEFWAEAANWSIHILNRCPTTALENMTPQEAWT 649

Query: 190  -CRMRENPL*HTLECLVALH 134
             C+ R +       CL  +H
Sbjct: 650  GCKPRVDHF-RIFGCLAHVH 668



 Score = 60.8 bits (146), Expect(3) = 1e-77
 Identities = 27/52 (51%), Positives = 37/52 (71%)
 Frame = -1

Query: 881 CLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLKEPVKP*TYSQV 726
           C+QV ++D + LWH R+GHL++KGL  L  +GMVEG PT+K P K  T+  V
Sbjct: 420 CMQVEADDESRLWHSRFGHLNYKGLRTLAYRGMVEGLPTVKTPQKLCTHCLV 471



 Score = 36.6 bits (83), Expect(3) = 1e-77
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = -3

Query: 75  FLRISEESKAYRLHDTIKKKITISK 1
           FL +S+ESKAY+L D I KKITIS+
Sbjct: 686 FLGVSKESKAYKLFDPITKKITISR 710


>gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1209

 Score =  220 bits (561), Expect(4) = 1e-77
 Identities = 105/180 (58%), Positives = 137/180 (76%)
 Frame = -2

Query: 724 LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
           ++ KQHRD+I K S WRA+ KLEL+HS+ICG I+P SN   RYFI+F DD++   W Y L
Sbjct: 445 VISKQHRDSIPKTSSWRATEKLELVHSDICGPITPTSNGGCRYFITFTDDYSRKTWTYPL 504

Query: 544 SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
            EK  AL  FK+FK ++E E+   I CLRTDRGGEF S  F++FCSE GI+RQ   AYTP
Sbjct: 505 KEKSSALAVFKRFKALVENESNQSIKCLRTDRGGEFLSDTFNEFCSEYGIKRQLTTAYTP 564

Query: 364 QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKACR 185
           QQNGV++RKNRT+MN+VRS+L+   +PK+FWPEAV  + YV+NR P +S+K++TPE+A R
Sbjct: 565 QQNGVSERKNRTLMNVVRSMLNGRNVPKRFWPEAVVWATYVINRSPTLSVKNMTPEEAWR 624



 Score = 55.1 bits (131), Expect(4) = 1e-77
 Identities = 19/37 (51%), Positives = 31/37 (83%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           KPSV++ +VFGC+ ++HVPD +R+K+D K ++C+ LG
Sbjct: 627 KPSVSFFKVFGCLGYVHVPDVKRKKLDAKGIKCVLLG 663



 Score = 50.8 bits (120), Expect(4) = 1e-77
 Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = -1

Query: 896 PVIS-GCLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLKE 756
           PVI+  CL+   +    LWH RYGHLS KGL  L +K MV G P L+E
Sbjct: 389 PVITPSCLKTAHDSEGSLWHHRYGHLSFKGLHTLAKKDMVNGLPLLQE 436



 Score = 35.8 bits (81), Expect(4) = 1e-77
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -3

Query: 84  KMHFLRISEESKAYRLHDTIKKKITISK 1
           K   L +SEESKAY+L+D I+KKI IS+
Sbjct: 658 KCVLLGVSEESKAYKLYDPIQKKIIISR 685


>dbj|GAU31303.1| hypothetical protein TSUD_315120 [Trifolium subterraneum]
          Length = 1229

 Score =  221 bits (563), Expect(3) = 1e-77
 Identities = 103/178 (57%), Positives = 135/178 (75%)
 Frame = -2

Query: 724 LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
           L+GKQ R+AI KQ+KWRA+ KL+LIHS+IC  I+P SN  KRYF++F DDF+   WVY L
Sbjct: 460 LIGKQQREAIPKQAKWRATTKLQLIHSDICEPINPCSNGGKRYFLTFTDDFSRKTWVYVL 519

Query: 544 SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
            EK  A   FK FK +IE E+ C+I  LRTDRGGEF S  F++FC+   I+RQ   AYTP
Sbjct: 520 KEKSEAFDIFKNFKALIEVESGCLIQALRTDRGGEFTSNAFNEFCNSKDIKRQLTTAYTP 579

Query: 364 QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
           QQNGV++RKNRT++N+VRS+L+   +PK FWPEA++ + YV+NR P  S+KD+TPE+A
Sbjct: 580 QQNGVSERKNRTLLNIVRSMLASKNVPKNFWPEALKWATYVMNRSPTTSVKDLTPEEA 637



 Score = 60.5 bits (145), Expect(3) = 1e-77
 Identities = 25/53 (47%), Positives = 38/53 (71%)
 Frame = -1

Query: 914 HVISGSPVISGCLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLKE 756
           ++++ S ++  CLQ++ ED  +LWH RYGH+S + L LLN K MV+G P L+E
Sbjct: 399 YILTTSVIVPMCLQISKEDKNQLWHNRYGHISMQRLKLLNSKDMVKGLPALEE 451



 Score = 59.3 bits (142), Expect(3) = 1e-77
 Identities = 22/37 (59%), Positives = 33/37 (89%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           KPSV + RVFGC+A++HVP+ QR+K+DN+S++C+ LG
Sbjct: 642 KPSVLHFRVFGCLAYVHVPENQRKKLDNRSIKCVLLG 678


>dbj|GAU47763.1| hypothetical protein TSUD_193000 [Trifolium subterraneum]
          Length = 622

 Score =  230 bits (586), Expect(3) = 2e-77
 Identities = 104/178 (58%), Positives = 138/178 (77%)
 Frame = -2

Query: 724 LVGKQHRDAISKQSKWRASRKLELIHSNICGTISPKSNSHKRYFISFIDDFT*MGWVYFL 545
           L GKQH+  I KQ+ WRAS+KLEL+HS+ICG I+PKSN   RYFI+F DD++   W YFL
Sbjct: 347 LSGKQHKKNIPKQANWRASQKLELVHSDICGPINPKSNGGNRYFITFTDDYSRKTWTYFL 406

Query: 544 SEKLVAL*TFKKFKIMIEKET*CVISCLRTDRGGEFNSKEFDKFCSENGIRRQFRAAYTP 365
            EK  A+  FK+FK ++EKE+ C++ CLRTDRGGEF S  F++FCS  GI+RQ   AYTP
Sbjct: 407 HEKSSAIDVFKRFKALVEKESGCLVQCLRTDRGGEFTSNTFNEFCSSQGIKRQLTTAYTP 466

Query: 364 QQNGVAQRKNRTVMNMVRSLLSEAKLPKQFWPEAVRLSFYVLNRCPAVSLKDITPEKA 191
           +QNGV++RKN+T++NMVRS++S   +PK+FWPEAV  + YV+NR P   +KD+TPE+A
Sbjct: 467 EQNGVSERKNKTLLNMVRSMISARGVPKKFWPEAVNWATYVMNRYPTFVVKDMTPEEA 524



 Score = 56.2 bits (134), Expect(3) = 2e-77
 Identities = 21/37 (56%), Positives = 30/37 (81%)
 Frame = -1

Query: 176 KPSVTYLRVFGCIAHMHVPDAQRRKMDNKSLRCIFLG 66
           KP V + RVFGC+AH HVP+A R+K+D +S++C+ LG
Sbjct: 529 KPYVHHFRVFGCLAHTHVPEAHRKKLDGRSIKCVLLG 565



 Score = 54.3 bits (129), Expect(3) = 2e-77
 Identities = 25/50 (50%), Positives = 34/50 (68%)
 Frame = -1

Query: 908 ISGSPVISGCLQVTSEDLAELWHKRYGHLSHKGLILLNQKGMVEGFPTLK 759
           I+ S +   CLQVT  + + LWH+RY HLS KGL +L+ K +V+G P LK
Sbjct: 288 IAASVMRPKCLQVTKHEESSLWHQRYAHLSMKGLKILSNKHLVKGLPELK 337