BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00026261
         (456 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]   199   4e-61
dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subt...   212   7e-61
gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposo...   204   1e-60
dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subt...   211   2e-60
gb|KYP40819.1| Retrovirus-related Pol polyprotein from transposo...   204   6e-60
gb|PNX69396.1| ubiquitin carboxyl-terminal hydrolase, partial [T...   189   4e-59
gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]   206   6e-59
dbj|GAU24969.1| hypothetical protein TSUD_312040 [Trifolium subt...   205   2e-58
gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]            204   2e-58
gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]            205   2e-58
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   204   3e-58
gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]            204   5e-58
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   202   2e-57
gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposo...   196   3e-57
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   202   3e-57
dbj|GAU51653.1| hypothetical protein TSUD_414750 [Trifolium subt...   201   3e-57
gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]   201   3e-57
dbj|GAU42085.1| hypothetical protein TSUD_200730 [Trifolium subt...   201   6e-57
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   198   7e-57
dbj|GAU37486.1| hypothetical protein TSUD_275380 [Trifolium subt...   201   7e-57

>gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 298

 Score =  199 bits (506), Expect = 4e-61
 Identities = 84/146 (57%), Positives = 112/146 (76%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           +F  + CK++H+EKG ++++ MT+N+++ ++A  + P CL  K ED  H+WHCRYGHL+ 
Sbjct: 47  VFSKNTCKIFHEEKGLIISTPMTANRMYVLLAPVMMPQCLVAKHEDIEHIWHCRYGHLNF 106

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL TL ++ MV GLP LKDS ++CPDC+I K HR++IPK +SWRAS KLELIHSDICGP
Sbjct: 107 KGLVTLAKRTMVKGLPILKDSAELCPDCVISKHHRDSIPKTASWRASSKLELIHSDICGP 166

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVY 18
           I P S+   RY +TF DDFSRKTW Y
Sbjct: 167 INPSSNGGCRYFITFTDDFSRKTWTY 192


>dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subterraneum]
          Length = 1302

 Score =  212 bits (540), Expect = 7e-61
 Identities = 94/149 (63%), Positives = 122/149 (81%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           + +N+ CKVYH++KG ++ S+M SN+LFPI+A A    CLQ   ED T LWHCRYGHL++
Sbjct: 376 VIKNNWCKVYHRDKGMIMCSQMASNKLFPIMAEA-KQVCLQANTEDITQLWHCRYGHLNI 434

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL+ L QK MV GLPK ++S+ +C DC+ GKQHRE+IPK S+W++SK+LELIHSDICGP
Sbjct: 435 KGLQNLQQKNMVIGLPKFEESNHVCADCLRGKQHRESIPKTSNWKSSKRLELIHSDICGP 494

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFLA 9
           ITP S+S KRY+LTFIDD+SRK WVY+L+
Sbjct: 495 ITPVSNSNKRYVLTFIDDYSRKIWVYYLS 523


>gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 508

 Score =  204 bits (518), Expect = 1e-60
 Identities = 93/152 (61%), Positives = 118/152 (77%), Gaps = 2/152 (1%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTP--TCLQMKCEDETHLWHCRYGHL 282
           IF++D C+VYHKEKG L+TS M +N++FPI A  +     C+Q    D T +WH RYGHL
Sbjct: 44  IFDDDKCRVYHKEKGLLMTSYMANNRMFPIKAKLVITEAACIQTSNVDSTEMWHKRYGHL 103

Query: 281 SMKGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDIC 102
           S  GLK L QK MV GLP+LK+ D++CP+C +GKQHR+AI K S+WRA+++LELIHSDIC
Sbjct: 104 SYGGLKLLNQKAMVKGLPELKEMDKVCPECAVGKQHRDAISKQSTWRATRRLELIHSDIC 163

Query: 101 GPITPESSSKKRYILTFIDDFSRKTWVYFLAE 6
           GP TP S+S +RY +TFIDDFSRKTWV+FL E
Sbjct: 164 GPSTPTSNSNRRYFITFIDDFSRKTWVFFLCE 195


>dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  211 bits (536), Expect = 2e-60
 Identities = 93/149 (62%), Positives = 121/149 (81%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           + +N+ CKVYH++KG ++ S+M SN+LFPI+A A    CLQ   ED T LWHCRYGHL++
Sbjct: 376 VIKNNWCKVYHRDKGMIMCSQMASNKLFPIMAEA-KQVCLQANIEDITQLWHCRYGHLNI 434

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL+ L QK MV GLPK ++S+ +C DC+ GKQHRE+IPK S+W++SK+LELIHSDICGP
Sbjct: 435 KGLQNLQQKNMVIGLPKFEESNHVCADCLRGKQHRESIPKTSNWKSSKRLELIHSDICGP 494

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFLA 9
           ITP S+S KRY+LTFIDD+SRK W Y+L+
Sbjct: 495 ITPVSNSNKRYVLTFIDDYSRKIWAYYLS 523


>gb|KYP40819.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 582

 Score =  204 bits (518), Expect = 6e-60
 Identities = 93/152 (61%), Positives = 118/152 (77%), Gaps = 2/152 (1%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTP--TCLQMKCEDETHLWHCRYGHL 282
           IF++D C+VYHKEKG L+TS M +N++FPI A  +     C+Q    D T +WH RYGHL
Sbjct: 373 IFDDDKCRVYHKEKGLLMTSYMANNRMFPIKAKPVITEAACIQTSNVDSTEMWHKRYGHL 432

Query: 281 SMKGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDIC 102
           S  GLK L QK MV GLP+LK+ D++CP+C +GKQHR+AI K S+WRA+++LELIHSDIC
Sbjct: 433 SYGGLKLLNQKAMVKGLPELKEMDKVCPECAVGKQHRDAISKQSTWRATRRLELIHSDIC 492

Query: 101 GPITPESSSKKRYILTFIDDFSRKTWVYFLAE 6
           GP TP S+S +RY +TFIDDFSRKTWV+FL E
Sbjct: 493 GPSTPTSNSNRRYFITFIDDFSRKTWVFFLCE 524


>gb|PNX69396.1| ubiquitin carboxyl-terminal hydrolase, partial [Trifolium pratense]
          Length = 149

 Score =  189 bits (480), Expect = 4e-59
 Identities = 84/143 (58%), Positives = 109/143 (76%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           +F+ND CKVYH ++G L TS M+ N+++ I    + P CL+   ++ T LWH RYGHLS 
Sbjct: 7   VFKNDECKVYHDDRGLLFTSHMSKNRMYVITTPVIMPMCLKTAKQESTQLWHDRYGHLSF 66

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL TL +K+MV GLP+L+DSD+ C DC+ GKQHR+ IPK ++WRAS KLELIHSDICGP
Sbjct: 67  KGLNTLSKKQMVIGLPELEDSDENCSDCLTGKQHRDIIPKQANWRASVKLELIHSDICGP 126

Query: 95  ITPESSSKKRYILTFIDDFSRKT 27
           I+P+S+   RY +TF DDFSRKT
Sbjct: 127 ISPQSNGGCRYFMTFTDDFSRKT 149


>gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1062

 Score =  206 bits (525), Expect = 6e-59
 Identities = 92/150 (61%), Positives = 120/150 (80%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           +F+ D+C+VYH+E+G ++  KMT+N+++ I+   + PTC ++  ED T+LWHCRYG+LS 
Sbjct: 402 VFKEDMCRVYHQERGVIMQCKMTANRMYVIMVDVVIPTCFKVTNEDVTYLWHCRYGYLSQ 461

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGLK L QK MV GLPKL+DS  +C DCMIGKQHRE   K S+ RA+K+L+LIH+D+ GP
Sbjct: 462 KGLKILEQKNMVRGLPKLQDSSNVCSDCMIGKQHREPFLKVSTRRATKRLQLIHADVFGP 521

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFLAE 6
           I PES+S KRY LTFIDDFSRKTWVYFL+E
Sbjct: 522 IKPESNSNKRYFLTFIDDFSRKTWVYFLSE 551


>dbj|GAU24969.1| hypothetical protein TSUD_312040 [Trifolium subterraneum]
          Length = 1326

 Score =  205 bits (522), Expect = 2e-58
 Identities = 94/150 (62%), Positives = 113/150 (75%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           IF+NDVCK YH EKG + ++ M++N+++ I A  L P CLQ   ED T LWH RYGHLS+
Sbjct: 376 IFKNDVCKAYHDEKGLIFSTPMSTNRMYIITAPVLVPMCLQTSIEDNTQLWHLRYGHLSI 435

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGLK L +K+MV GLP L+D D+ C DC+ GKQ REAIPK + WRA+ KL+LIHSDICGP
Sbjct: 436 KGLKLLSKKDMVKGLPALQDMDEKCIDCLNGKQQREAIPKQAKWRATTKLQLIHSDICGP 495

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFLAE 6
           I P S+  KRY LTF DDFSRKTWVY L E
Sbjct: 496 INPSSNGGKRYFLTFTDDFSRKTWVYVLKE 525


>gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]
          Length = 912

 Score =  204 bits (519), Expect = 2e-58
 Identities = 86/148 (58%), Positives = 119/148 (80%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           +F+N++C+++H+EKG +LT+KMT N+++ + A+ + P CLQ    +ET LWH RY HLS 
Sbjct: 373 VFKNNMCQLFHEEKGLILTTKMTFNKMYIVKASMILPNCLQATALEETTLWHQRYAHLSF 432

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           +GLKTL+ K+MV GLP LK+S   C DC++GKQHR +IPK ++WRASKKLEL+HSDICGP
Sbjct: 433 QGLKTLITKQMVKGLPNLKESGDKCTDCLVGKQHRSSIPKEANWRASKKLELVHSDICGP 492

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFL 12
           I P+S+   RY +TFIDDF++KTW+YFL
Sbjct: 493 INPQSNGGNRYFITFIDDFTKKTWIYFL 520


>gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]
          Length = 1172

 Score =  205 bits (521), Expect = 2e-58
 Identities = 90/148 (60%), Positives = 120/148 (81%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           +F+ + CKVYH++KG +++S+M SN+L+PI A A    C Q K ED ++LWHCRYGHL+ 
Sbjct: 371 VFKRNWCKVYHQDKGMIMSSQMASNKLYPIFAEAKV-ACFQTKSEDISYLWHCRYGHLNF 429

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL+TL QK MV  LPK+++SD +C +C++GKQHRE+IPK S+ ++SK+LEL+HSDICGP
Sbjct: 430 KGLQTLQQKNMVKDLPKIEESDHMCTNCLVGKQHRESIPKTSNLKSSKRLELVHSDICGP 489

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFL 12
           ITP S+S  RY LTFIDD+SRKTW YFL
Sbjct: 490 ITPASNSDNRYFLTFIDDYSRKTWAYFL 517


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  204 bits (520), Expect = 3e-58
 Identities = 88/150 (58%), Positives = 118/150 (78%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           +F+ D CKVYH ++G ++ +KM++N+++ I A  + P CL+    D   LWHCRYGHLS 
Sbjct: 373 VFKQDFCKVYHPQRGLIMATKMSANRMYIIYAPVIIPMCLKTVKMDNNELWHCRYGHLSF 432

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL TLV+K+MV GLP+L+++ + C +CM GKQHREAIPK+S+WRASKKLEL+HSDICGP
Sbjct: 433 KGLNTLVKKDMVRGLPQLQETTENCTNCMTGKQHREAIPKSSNWRASKKLELVHSDICGP 492

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFLAE 6
           ITP+S+   RY +TF DDFSRKTW Y L++
Sbjct: 493 ITPQSNGGIRYFMTFTDDFSRKTWTYLLSD 522


>gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]
          Length = 1328

 Score =  204 bits (519), Expect = 5e-58
 Identities = 89/150 (59%), Positives = 117/150 (78%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           +F+ND+CKV+H+E+G ++++ M++N++F I AT L P CLQ   E ++ LWH RYGHLS 
Sbjct: 380 VFKNDICKVFHEERGLIMSTPMSANRMFVIKATVLVPMCLQTTNEIDSQLWHKRYGHLSY 439

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL TLV+KEMV GLP LK++  +C DC+ GKQHRE IPK  +WRA+ KLELIHSDICGP
Sbjct: 440 KGLNTLVKKEMVRGLPALKEASDVCSDCLFGKQHREVIPKKVNWRATHKLELIHSDICGP 499

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFLAE 6
           I P S+S  +Y +TF DDF+RKTWVY L +
Sbjct: 500 INPASNSGNKYFITFTDDFTRKTWVYILQD 529


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  202 bits (514), Expect = 2e-57
 Identities = 89/152 (58%), Positives = 116/152 (76%), Gaps = 2/152 (1%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATAL--TPTCLQMKCEDETHLWHCRYGHL 282
           + +N +C++YH  KG ++ +KM++N++F I+A  L     C Q   ED THLWHCRYGHL
Sbjct: 379 LIQNGMCQIYHPRKGLIMQTKMSANRMFVILANMLPQASACFQTVSEDNTHLWHCRYGHL 438

Query: 281 SMKGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDIC 102
           S KGLKTL  + MV GLP  K   ++C DCM+GKQHRE+IPK S WRAS +L+LIHSDIC
Sbjct: 439 SFKGLKTLQYRNMVKGLPDFKMPSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDIC 498

Query: 101 GPITPESSSKKRYILTFIDDFSRKTWVYFLAE 6
           GPI P S+++KRY+++FIDD+SRKTWVYFL E
Sbjct: 499 GPIKPLSNNRKRYLISFIDDYSRKTWVYFLNE 530


>gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 560

 Score =  196 bits (499), Expect = 3e-57
 Identities = 85/152 (55%), Positives = 116/152 (76%), Gaps = 2/152 (1%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALT--PTCLQMKCEDETHLWHCRYGHL 282
           + +N  CK+YH EKG ++ ++MT+N++F + A  +   PTCL    ++  HLWHCRYGHL
Sbjct: 350 LIQNGSCKIYHPEKGLVIQTEMTTNRMFVLTAVPMPQKPTCLHTTVQEIAHLWHCRYGHL 409

Query: 281 SMKGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDIC 102
           S KGL+TL  K+MV GLP LK    +C  CMIGKQHR+ IPK ++WRA++KL+LIH+DIC
Sbjct: 410 SHKGLRTLQYKKMVHGLPPLKSPTDVCTVCMIGKQHRDPIPKKANWRATQKLQLIHADIC 469

Query: 101 GPITPESSSKKRYILTFIDDFSRKTWVYFLAE 6
           GPI+P S+SKKRY++ FIDDF+ KTW+YF+ E
Sbjct: 470 GPISPTSNSKKRYLICFIDDFTMKTWIYFMVE 501


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  202 bits (513), Expect = 3e-57
 Identities = 90/152 (59%), Positives = 116/152 (76%), Gaps = 2/152 (1%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATAL--TPTCLQMKCEDETHLWHCRYGHL 282
           +  N +C++YH  KG ++ +KM++N++F I A  L     C Q   ED THLWHCRYGHL
Sbjct: 100 LIRNGMCQIYHPRKGLIMQTKMSANRMFVIRANMLPQASACFQTVSEDNTHLWHCRYGHL 159

Query: 281 SMKGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDIC 102
           S KGL+TL  ++MV GLP  K S ++C DCM+GKQHRE+IPK S WRAS +L+LIHSDIC
Sbjct: 160 SFKGLRTLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDIC 219

Query: 101 GPITPESSSKKRYILTFIDDFSRKTWVYFLAE 6
           GPI P S+S+KRY+++FIDD+SRKTWVYFL E
Sbjct: 220 GPIKPLSNSRKRYLISFIDDYSRKTWVYFLYE 251


>dbj|GAU51653.1| hypothetical protein TSUD_414750 [Trifolium subterraneum]
          Length = 847

 Score =  201 bits (510), Expect = 3e-57
 Identities = 88/149 (59%), Positives = 113/149 (75%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           +F+ D+CKVYH+EKG ++++KM+SN+++ I A  + P C +    D   LWHCRYGHLS 
Sbjct: 377 VFKKDLCKVYHEEKGLIMSTKMSSNRMYVIFAPIIVPMCFKTVKMDNNELWHCRYGHLSF 436

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL TLV+KEMV GLP L+D +     C+  KQHREAIPK+S+WRA+K LEL+HSDICGP
Sbjct: 437 KGLNTLVKKEMVKGLPHLQDMEDTFVSCLTSKQHREAIPKSSNWRATKLLELVHSDICGP 496

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFLA 9
           ITP+S+   RY +TF DDFSRKTW Y LA
Sbjct: 497 ITPQSNGGNRYFITFTDDFSRKTWTYLLA 525


>gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 886

 Score =  201 bits (510), Expect = 3e-57
 Identities = 87/149 (58%), Positives = 118/149 (79%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           IFE D CKV+H + G ++TS M++N++F I A+ ++P CL++  + ++HLWHCRY HLS 
Sbjct: 377 IFEKDQCKVFHDKWGLIITSDMSANRMFIIQASIISPMCLKISKDSQSHLWHCRYAHLSF 436

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL TLV+K+MV GLP L+++D++C DC  GKQ REAIPK+++WRAS+KL+L+HSDICGP
Sbjct: 437 KGLNTLVKKDMVKGLPTLQETDEVCSDCATGKQSREAIPKSNNWRASEKLQLVHSDICGP 496

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFLA 9
           I P S+   RY +TF DDFSRKTW Y LA
Sbjct: 497 INPASNGGSRYFITFTDDFSRKTWTYPLA 525


>dbj|GAU42085.1| hypothetical protein TSUD_200730 [Trifolium subterraneum]
          Length = 1236

 Score =  201 bits (511), Expect = 6e-57
 Identities = 90/148 (60%), Positives = 117/148 (79%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           +F+N+ CKVYH+EKG L++S++ SN L+PII  A      Q +  D  HLWHCRYGHL+ 
Sbjct: 243 VFKNNWCKVYHQEKGLLMSSQIASNNLYPIITEAKM-AYFQERGVDVNHLWHCRYGHLNY 301

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL+ L QK MV  LP+++DS  +C DC+IGKQHR++IPK S W+++K+LELIHSDICGP
Sbjct: 302 KGLQLLHQKNMVRDLPRIEDSKLVCEDCLIGKQHRDSIPKTSKWKSTKRLELIHSDICGP 361

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFL 12
           ITP S+S  +Y+LTFIDD+SRKTWVYFL
Sbjct: 362 ITPSSNSDNKYVLTFIDDYSRKTWVYFL 389


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  198 bits (503), Expect = 7e-57
 Identities = 84/153 (54%), Positives = 121/153 (79%), Gaps = 3/153 (1%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTP---TCLQMKCEDETHLWHCRYGH 285
           + ++ VCK+YH +KG ++ + MT+N++F ++A  +     TC+Q   +D +HLWHCRY H
Sbjct: 391 LIQHGVCKIYHSKKGLIMQTPMTANRMFVLLANVVVTDFSTCMQASSDDLSHLWHCRYSH 450

Query: 284 LSMKGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDI 105
           L+ KGLKTL  ++MV GLP++K S ++C DC++GKQ R++IPK+S WRAS++L+L+H+DI
Sbjct: 451 LNYKGLKTLHYRKMVKGLPQIKASARVCHDCLVGKQSRDSIPKSSQWRASQRLQLVHADI 510

Query: 104 CGPITPESSSKKRYILTFIDDFSRKTWVYFLAE 6
           CGPITP S+S KRY+L+FIDDFSRK WVYFL E
Sbjct: 511 CGPITPTSNSDKRYVLSFIDDFSRKMWVYFLTE 543


>dbj|GAU37486.1| hypothetical protein TSUD_275380 [Trifolium subterraneum]
          Length = 1421

 Score =  201 bits (510), Expect = 7e-57
 Identities = 87/149 (58%), Positives = 112/149 (75%)
 Frame = -2

Query: 455 IFENDVCKVYHKEKGRLLTSKMTSNQLFPIIATALTPTCLQMKCEDETHLWHCRYGHLSM 276
           +F+ D+CKVYH+EKG ++++KM+SN+++ I A  + P C +    D   LWHCRY HLS 
Sbjct: 377 VFKKDLCKVYHEEKGLIMSTKMSSNRMYVIFAPVIVPMCFKTVKMDNNELWHCRYDHLSF 436

Query: 275 KGLKTLVQKEMVAGLPKLKDSDQICPDCMIGKQHREAIPKNSSWRASKKLELIHSDICGP 96
           KGL TLV+KEMV GLP L+D +  C  C+ GKQHREAIPK+S WRA++ LEL+HSDIC P
Sbjct: 437 KGLNTLVKKEMVKGLPHLQDMEDTCVSCLTGKQHREAIPKSSDWRATRPLELVHSDICEP 496

Query: 95  ITPESSSKKRYILTFIDDFSRKTWVYFLA 9
           ITP+S+   RY +TF DDFSRKTW Y LA
Sbjct: 497 ITPQSNGGNRYFITFTDDFSRKTWTYLLA 525