BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00024301
         (821 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU31120.1| hypothetical protein TSUD_212270 [Trifolium subt...   201   2e-59
gb|PNY06182.1| ribonuclease H [Trifolium pratense]                    204   1e-57
gb|PNX79929.1| ribonuclease H, partial [Trifolium pratense]           203   8e-57
gb|PNX94788.1| ribonuclease H [Trifolium pratense]                    189   3e-53
dbj|GAU51253.1| hypothetical protein TSUD_412460, partial [Trifo...   184   3e-50
gb|PNY12327.1| ribonuclease H [Trifolium pratense]                    166   1e-45
gb|PNY17666.1| ribonuclease H [Trifolium pratense]                    172   4e-45
gb|PNX88162.1| hypothetical protein L195_g044263 [Trifolium prat...   163   7e-44
dbj|GAU43243.1| hypothetical protein TSUD_241340 [Trifolium subt...   161   1e-43
gb|PNX81608.1| ribonuclease H [Trifolium pratense]                    165   4e-43
ref|XP_015936169.1| uncharacterized protein LOC107462117 [Arachi...   167   5e-43
gb|PNY06537.1| ribonuclease H, partial [Trifolium pratense]           166   9e-43
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas...   164   2e-42
dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subt...   162   1e-41
gb|PNY15498.1| ribonuclease H [Trifolium pratense]                    155   2e-41
gb|PNY10278.1| ribonuclease H [Trifolium pratense]                    152   3e-40
dbj|GAU50328.1| hypothetical protein TSUD_290640 [Trifolium subt...   154   6e-40
dbj|GAU43930.1| hypothetical protein TSUD_28720 [Trifolium subte...   152   1e-39
gb|PNY15946.1| ribonuclease H, partial [Trifolium pratense]           155   3e-39
ref|XP_016162229.1| uncharacterized protein LOC107605009 [Arachi...   155   6e-39

>dbj|GAU31120.1| hypothetical protein TSUD_212270 [Trifolium subterraneum]
          Length = 347

 Score =  201 bits (512), Expect = 2e-59
 Identities = 97/261 (37%), Positives = 140/261 (53%), Gaps = 4/261 (1%)
 Frame = +3

Query: 51  INCMPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVPERVR 230
           I  +P P  +   D   WP +R G FT++SAY  L     L  +  W  IWK++VPERVR
Sbjct: 5   IKALPPPQNTDEDDERIWPGDRLGRFTIASAYNLLCGYCELAVDDMWNNIWKMEVPERVR 64

Query: 231 SFAWQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMR 410
            F W++ +G+LPT   C  W      C HCVGV+E+IIHVLRDCPLA  VW  L+    R
Sbjct: 65  YFIWRLRYGRLPTNKACHPWGHGAPYCGHCVGVEESIIHVLRDCPLAHDVWNHLLPMQTR 124

Query: 411 SNFFGYDFGAWVRFNV----GVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRPAFPAT 578
             FF   + +W + N+     +  G+ WR VWA TC+ LW WRN+  +D  F RP + + 
Sbjct: 125 LGFFTCHYHSWFQHNMLNYEKLEGGNEWRVVWAVTCYHLWLWRNKETFDYEFVRPRYASQ 184

Query: 579 VVQRYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXXXXXLV 758
           V+  YV  Y   K+  +      +  + V W+   +GW+++NTD              ++
Sbjct: 185 VIHHYVENYISAKSSSSFIMDKARININVRWEAPRNGWISLNTD--GAVQHGVAGCGGVL 242

Query: 759 RDHHGRWLGGFTRFIGETHAY 821
           RD+ G W+ GF++FIG    +
Sbjct: 243 RDYQGNWITGFSKFIGTASVF 263


>gb|PNY06182.1| ribonuclease H [Trifolium pratense]
          Length = 686

 Score =  204 bits (520), Expect = 1e-57
 Identities = 100/265 (37%), Positives = 143/265 (53%), Gaps = 4/265 (1%)
 Frame = +3

Query: 39   IILLINCMPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVP 218
            I+  I  +P P    G D+  WP ++ G FTVSSAY  L+   +L  +  W++IWKLD P
Sbjct: 307  IVQKIMAIPPPMVEDGDDVRVWPGDKRGRFTVSSAYSMLQGHHNLLFDSLWRSIWKLDAP 366

Query: 219  ERVRSFAWQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVL 398
            ER+R F WQ+M+G+LPT   CSRW      C +CVG++ET+IHV+RDCP+A  +W  LV 
Sbjct: 367  ERIRCFVWQLMYGRLPTNSACSRWGHTVPQCDYCVGIEETMIHVMRDCPVAHEIWNNLVP 426

Query: 399  QDMRSNFFGYDFGAWVRFNVGV----MDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRPA 566
               R  FF  ++  WV  N+ V    ++G  WR VWAT C+++W WRN+  +D +F RP 
Sbjct: 427  LQGRLAFFTCNYQNWVVINMEVTVKTIEGVEWRVVWATACYYIWRWRNKFKFDSNFVRPL 486

Query: 567  FPATVVQRYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXXX 746
             P   +  YV  Y   K  ++      +  + + W+      + +NTD            
Sbjct: 487  HPHKEIMNYVDCYNKAKPVVDVVSASSRRRIDIRWRAPQRDCICLNTD--GALLGGVAGC 544

Query: 747  XXLVRDHHGRWLGGFTRFIGETHAY 821
                RD +G W GGF + IG   AY
Sbjct: 545  GGAFRDSNGAWKGGFAKNIGSASAY 569


>gb|PNX79929.1| ribonuclease H, partial [Trifolium pratense]
          Length = 709

 Score =  203 bits (516), Expect = 8e-57
 Identities = 99/266 (37%), Positives = 143/266 (53%), Gaps = 4/266 (1%)
 Frame = +3

Query: 36   QIILLINCMPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDV 215
            +I+  I  +P P  + G+D   WP +R G FTVSSAY  +    +L  +  WK IW L+V
Sbjct: 329  EIMSRITALPPPIDTDGADERVWPGDRLGRFTVSSAYKLVCGYHALEPDAMWKHIWNLEV 388

Query: 216  PERVRSFAWQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLV 395
            PER+R F W++ +G+L T   C+RW   T  C HCVG +ETIIH LRDCPLA   W+ LV
Sbjct: 389  PERIRCFIWRLKYGRLTTNKTCNRWGYGTPYCDHCVGEEETIIHALRDCPLAHNTWQHLV 448

Query: 396  LQDMRSNFFGYDFGAWVRFNV----GVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRP 563
                R +FF  ++  W + N+     +  G  WR +WA+TCF LW WRN+  +D  + RP
Sbjct: 449  PIQNRLDFFTCNYHVWFQRNMESVTSLEGGIEWRVIWASTCFHLWLWRNKEKFDTEYVRP 508

Query: 564  AFPATVVQRYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXX 743
               +  +  YV  Y      +       +  + V W+  +  W ++NTD           
Sbjct: 509  CLSSRYIHNYVENYYKAHRSIALIMEHPRVVINVRWEAPLVSWNSINTD--GAVQHGIAG 566

Query: 744  XXXLVRDHHGRWLGGFTRFIGETHAY 821
               ++RDH G W+GGF + IG T+A+
Sbjct: 567  CGGVLRDHRGAWIGGFAKNIGTTNAF 592


>gb|PNX94788.1| ribonuclease H [Trifolium pratense]
          Length = 509

 Score =  189 bits (481), Expect = 3e-53
 Identities = 91/256 (35%), Positives = 134/256 (52%), Gaps = 5/256 (1%)
 Frame = +3

Query: 69  PAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVPERVRSFAWQI 248
           P  S G D   WP    G FTVS+AY  L  A    +E  W  IWK+D  ER++ F WQ+
Sbjct: 136 PHESQGEDGQLWPGTNTGQFTVSAAYQLLTEAAEENDEKKWTQIWKIDSTERIKVFIWQL 195

Query: 249 MHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMRSNFFGY 428
            H +L T+   +RW    S C  C   +E+ IHV+RDCP A+ +W+ L+    R  FF  
Sbjct: 196 AHDRLMTKARLARWQIGNSYCDSCTQFEESTIHVVRDCPRAVHLWRHLISNQERGYFFVI 255

Query: 429 DFGAWVRFNV----GVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRPAFPATVVQRYV 596
           +F  W+  N+    G   G+ W+ +WATTC+ LW WRN++++D  F  P  P  VV  YV
Sbjct: 256 EFDEWIHLNLNNKFGQNYGNDWKAIWATTCYLLWLWRNKSIHDDEFVIPERPWQVVMDYV 315

Query: 597 HEYQVGK-NQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXXXXXLVRDHHG 773
             Y+     +     G V++ V ++W     GW  +N+D              ++R+ +G
Sbjct: 316 AAYKHSMLTEEQVGHGRVQQQVDITWLAPPPGWFALNSDGAAKLSESKAGCGGVLRNENG 375

Query: 774 RWLGGFTRFIGETHAY 821
            W+ GFT+ +G+T AY
Sbjct: 376 NWIEGFTKALGDTTAY 391


>dbj|GAU51253.1| hypothetical protein TSUD_412460, partial [Trifolium subterraneum]
          Length = 609

 Score =  184 bits (466), Expect = 3e-50
 Identities = 87/250 (34%), Positives = 134/250 (53%), Gaps = 4/250 (1%)
 Frame = +3

Query: 84   GSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVPERVRSFAWQIMHGKL 263
            G D   WP ER GNF+V++AY YL        E  W  IW+L+  ER+R F WQ++H ++
Sbjct: 252  GPDTPLWPGERMGNFSVATAYQYLTGVHLREYEKKWFKIWRLETTERIRVFMWQVLHDRI 311

Query: 264  PTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMRSNFFGYDFGAW 443
             T    ++W+     C +C  ++ET +HVLRDCPLA+ VW+ L+ ++ R  FF      W
Sbjct: 312  LTNWRTAKWNLTDPYCSYCEHMEETTLHVLRDCPLAVEVWQHLLEEEHRGRFFIGQLHQW 371

Query: 444  VRFN----VGVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRPAFPATVVQRYVHEYQV 611
            +  N    +G+     W  VW TTCF+LW WRN+ +++P+ +    P + +   V+EY+ 
Sbjct: 372  IDLNLSTSIGIRRDLDWDAVWVTTCFWLWKWRNKRVHEPNHTSQWKPWSFILNLVNEYKY 431

Query: 612  GKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXXXXXLVRDHHGRWLGGF 791
             K      +   KE   + W     GWV +NTD              ++R+ +G W+ GF
Sbjct: 432  TKQARETEKPCQKELKDIKWIYPAKGWVCLNTDGAAKSDTGIAGCGGILRNDNGIWICGF 491

Query: 792  TRFIGETHAY 821
            ++F+G T AY
Sbjct: 492  SKFLGNTSAY 501


>gb|PNY12327.1| ribonuclease H [Trifolium pratense]
          Length = 370

 Score =  166 bits (421), Expect = 1e-45
 Identities = 88/266 (33%), Positives = 129/266 (48%), Gaps = 4/266 (1%)
 Frame = +3

Query: 36  QIILLINCMPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDV 215
           +II  I  +P P  + G+D   WP +R G FT+SSAY  +     L ++  WK IW+L+V
Sbjct: 35  EIISKITALPHPMEADGADERGWPGDRMGRFTISSAYKLVCGYHELESDAIWKHIWRLEV 94

Query: 216 PERVRSFAWQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLV 395
           PER+R F W++ +G++PT   C+RW   T  C +CVG +ET+IH +RDCPLA   WK LV
Sbjct: 95  PERIRCFIWRLRYGRIPTNKVCNRWGYGTPYCDNCVGEEETVIHAIRDCPLAHNTWKNLV 154

Query: 396 LQDMRSNFFGYDFGAWVRFNV----GVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRP 563
               R  FF  ++  W + N+     +  G GWR +WATTCF +W WRN+  +D  F   
Sbjct: 155 PIKYRLEFFTCNYHVWFQRNMESDESLEWGIGWRVIWATTCFHIWLWRNKEKFDSEF--- 211

Query: 564 AFPATVVQRYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXX 743
                    ++    +   Q N    G +E                              
Sbjct: 212 ---------HLGTALIHMEQCNMVSLGAEE------------------------------ 232

Query: 744 XXXLVRDHHGRWLGGFTRFIGETHAY 821
                 +H G W+GG+ + IG T+ +
Sbjct: 233 ----FYEHQGAWIGGYAKNIGTTNVF 254


>gb|PNY17666.1| ribonuclease H [Trifolium pratense]
          Length = 856

 Score =  172 bits (436), Expect = 4e-45
 Identities = 90/254 (35%), Positives = 123/254 (48%), Gaps = 3/254 (1%)
 Frame = +3

Query: 69   PAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVPERVRSFAWQI 248
            P    G D   W   +A  FT++SAY  LR     G    WK I  L+VPERV  FAWQ+
Sbjct: 512  PHVENGEDTRTWGCNKAVTFTIASAYKLLRGFNENGATTVWKLICSLEVPERVGCFAWQV 571

Query: 249  MHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMRSNFFGY 428
             H                          ET++HVLRDC +A  VW+ L+   + S FFG 
Sbjct: 572  AH--------------------------ETVLHVLRDCRVASFVWRYLIPATLWSVFFGG 605

Query: 429  DFGAWVRFNVGVMDGSG---WRNVWATTCFFLWGWRNRTMYDPSFSRPAFPATVVQRYVH 599
            D   WV+FN+      G   W   WAT C+ LW WRNR ++D  +SRP     +++R V 
Sbjct: 606  DMAQWVQFNMVQARHDGRKSWPKTWATACYMLWRWRNREVHDAEYSRPTNTPVIIRRAVA 665

Query: 600  EYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXXXXXLVRDHHGRW 779
            +Y +G    NP      +  +V W+   +GW+ +NTD              ++RDH+G W
Sbjct: 666  DYDMGLRSQNPEHYREMQRRMVQWQRPAEGWICINTDGAAKERGKIAGSGRVMRDHNGIW 725

Query: 780  LGGFTRFIGETHAY 821
            L  F+RFIGE  A+
Sbjct: 726  LCSFSRFIGEATAF 739


>gb|PNX88162.1| hypothetical protein L195_g044263 [Trifolium pratense]
          Length = 414

 Score =  163 bits (412), Expect = 7e-44
 Identities = 86/229 (37%), Positives = 121/229 (52%), Gaps = 5/229 (2%)
 Frame = +3

Query: 39  IILLINCMPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVP 218
           ++ +I  +P P  S G+D  +  ++ AGNF++S+ Y  L          NWK IWK+ V 
Sbjct: 183 LLHMIAAIPPPEESAGADSAYCMEDTAGNFSISAMYHPLYRFDDSNGAANWKHIWKIKVQ 242

Query: 219 ERVRSFAWQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVL 398
           ERVR F W + H ++ T    +R    +S C  C    ETI+HV+RDCPL + +W  LV 
Sbjct: 243 ERVRVFVWLMYHERILTNYQKNRMGLGSSMCDFCGDQVETILHVMRDCPLVMPLWLNLVH 302

Query: 399 QDMRSNFFGYDFGAWVRFNVGVMDGSG-----WRNVWATTCFFLWGWRNRTMYDPSFSRP 563
            +MR NF       W+ FN+ V D  G     W+++WA +C F W WRN+  +  +F RP
Sbjct: 303 SNMRRNFCTGYTQQWIDFNLNV-DVRGQFDVEWKSIWAISCHFAWSWRNKEKHGLNFIRP 361

Query: 564 AFPATVVQRYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTD 710
             P  VV   V  Y V  + L+      K   L+SWKP   GWV +NTD
Sbjct: 362 IAPTMVVMNVVRNYVVADDVLHIDMESRKVEKLISWKPPPVGWVRLNTD 410


>dbj|GAU43243.1| hypothetical protein TSUD_241340 [Trifolium subterraneum]
          Length = 371

 Score =  161 bits (407), Expect = 1e-43
 Identities = 86/267 (32%), Positives = 131/267 (49%), Gaps = 4/267 (1%)
 Frame = +3

Query: 33  KQIILLINCMPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLD 212
           + I+  I  +  P+   G+D      +  G  +VSS Y +L N     +  +WK IW+L 
Sbjct: 88  EDIMHRIAAISPPSDDGGNDCRRLNMKANGGISVSSMYKHLCNFDVNDDVNDWKDIWRLK 147

Query: 213 VPERVRSFAWQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLL 392
           VPERVR+F W + H +L T     +    ++ C +C  + E  +H LRDCP  + +W  L
Sbjct: 148 VPERVRTFIWLMRHNRLLTNEKKHKMGLGSAMCDYCGSIIEDTLHALRDCPQTMPIWLNL 207

Query: 393 VLQDMRSNFFGYDFGAWVRFN----VGVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSR 560
           V +  R+NFF  D   W+ +N    +G  +G  W+ +W   C  LW WRN+  ++ SFSR
Sbjct: 208 VNEHARANFFNGDLFYWINYNMSNYMGKYNGVEWKIMWVVACHQLWFWRNKEKHEESFSR 267

Query: 561 PAFPATVVQRYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXX 740
           P+     V   V  YQ    +        +E V+V WK    GWV +NTD          
Sbjct: 268 PSNAVLHVMNQVKYYQDADCENVIVVSPTREVVMVGWKYPPSGWVKLNTD-GSCRKDGRS 326

Query: 741 XXXXLVRDHHGRWLGGFTRFIGETHAY 821
               ++R   G W+GGF +F+G ++ Y
Sbjct: 327 GCGGVIRGSEGEWIGGFAKFVGRSNVY 353


>gb|PNX81608.1| ribonuclease H [Trifolium pratense]
          Length = 630

 Score =  165 bits (417), Expect = 4e-43
 Identities = 92/265 (34%), Positives = 133/265 (50%), Gaps = 4/265 (1%)
 Frame = +3

Query: 39   IILLINCMPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVP 218
            II   + + AP+     D++ W     G F+++SAY  L        E +W  IW+L VP
Sbjct: 249  IISKFHAIMAPSSDSNEDMMAWSGTANGEFSIASAYTLLCRFNDDAWEADWLQIWRLRVP 308

Query: 219  ERVRSFAWQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVL 398
            ER+R+F W I H +L T    S+       C HCV V E  +HVLRDCPLA +VW  L+ 
Sbjct: 309  ERIRTFIWIIRHDRLLTNYRKSKMHISEPWCNHCVDVVEDTLHVLRDCPLAKSVWCNLLN 368

Query: 399  QDMRSNFFGYDFGAWVRFN----VGVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRPA 566
               +  FF      W+  N    +G  +   W +VWAT+C FLW WRNR  +  S  RP 
Sbjct: 369  GKDKDWFFTAALDEWIILNMKKQLGRDNNLSWASVWATSCHFLWLWRNRETHGDSRLRPL 428

Query: 567  FPATVVQRYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXXX 746
             P  ++ ++V +Y              K  + V+W+   DGW+++NTD            
Sbjct: 429  QPWKLILKWVMQYFEADVSGIVIANRQKVEITVTWQCPEDGWLSLNTD-GASRGHTSAGC 487

Query: 747  XXLVRDHHGRWLGGFTRFIGETHAY 821
              L+R+  G+WLGGF+R +G  +AY
Sbjct: 488  GGLLRNSEGQWLGGFSRNLGRCNAY 512


>ref|XP_015936169.1| uncharacterized protein LOC107462117 [Arachis duranensis]
          Length = 1250

 Score =  167 bits (422), Expect = 5e-43
 Identities = 85/261 (32%), Positives = 131/261 (50%), Gaps = 4/261 (1%)
 Frame = +3

Query: 51   INCMPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVPERVR 230
            I  +P   P +GSD L W     GNF++SS Y  L N     +++ W+ IWK   PER++
Sbjct: 874  IRALPPAEPELGSDGLRWNPASDGNFSISSTYRILENHGEETDQI-WRIIWKWRGPERIK 932

Query: 231  SFAWQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMR 410
             F W ++  ++ T    +R  G  S C+ C GV+E  IH+LRDCP+A  VW  L+  +  
Sbjct: 933  CFIWLVVRERIMTSHRRARIFGMNSSCHRCTGVEENTIHMLRDCPVASRVWVKLIHHEHI 992

Query: 411  SNFFGYDFGAWVRFN----VGVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRPAFPAT 578
             +FF   F AW+R+N    +G      W   +  TC++LW WRN+ +++P F RP  P  
Sbjct: 993  HDFFRAPFNAWIRWNLAMDLGTTKQGNWNTQFLVTCWWLWKWRNQEIFNPPFQRPMQPLP 1052

Query: 579  VVQRYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXXXXXLV 758
             + + V   Q    +    +  ++    + W+   + W+ VNTD              L+
Sbjct: 1053 FILKQVKLIQEAFKKEGQRKNKIETN--ICWECPPEDWMKVNTDGAAKGNPGMAGCGGLI 1110

Query: 759  RDHHGRWLGGFTRFIGETHAY 821
            R++ GRW+ GF   IG   AY
Sbjct: 1111 RNYQGRWIAGFVANIGYCTAY 1131


>gb|PNY06537.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1770

 Score =  166 bits (420), Expect = 9e-43
 Identities = 82/253 (32%), Positives = 125/253 (49%), Gaps = 4/253 (1%)
 Frame = +3

Query: 60   MPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVPERVRSFA 239
            +P P  +   D+ +WP  + GNFTV+SAY  L +     N   W  +WK+   ERVR+F 
Sbjct: 1507 IPPPEDAQDDDINYWPAGKHGNFTVASAYNILADINCQHNNTTWNIVWKIQACERVRAFV 1566

Query: 240  WQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMRSNF 419
            W + HG++ T    S+ +     C  C    ET +HVLRDC  ++ VW  +V    R  F
Sbjct: 1567 WLLKHGRMLTHYRMSKMNLGLPFCTFCEDEIETELHVLRDCSKSMQVWLNIVHDSSREVF 1626

Query: 420  FGYDFGAWVRFN----VGVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRPAFPATVVQ 587
            F  DF  W+  N    +  +D + W++ WA  C  LW WRN+  +D SF+RP  P  V++
Sbjct: 1627 FNADFQQWINMNLHGDIQGVDVNNWQSYWAIACHALWTWRNKEKHDDSFNRPYRPHLVIK 1686

Query: 588  RYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXXXXXLVRDH 767
            +Y+ EY+      +      +    + W P  +GW+ +NTD              +VR +
Sbjct: 1687 QYMTEYEKSSQVDHNVVVLPRVMRQIGWCPPSEGWIIINTD-GAKKENHYSGCGGIVRGN 1745

Query: 768  HGRWLGGFTRFIG 806
               W GGF + +G
Sbjct: 1746 SAEWCGGFAKGLG 1758


>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl
            transferase, Ribonuclease H fold [Medicago truncatula]
          Length = 729

 Score =  164 bits (415), Expect = 2e-42
 Identities = 89/267 (33%), Positives = 136/267 (50%), Gaps = 6/267 (2%)
 Frame = +3

Query: 39   IILLINCMPAPAPSMGSDLLFWPKERAGNFTVSSAY-VYLRNATSLGNEVNWKTIWKLDV 215
            I+  I  +P P+   G D + W       FTV SAY +   N  ++G +  WKT+W    
Sbjct: 415  IVNQILALPTPSDFDGPDTIGWGGTNTLKFTVQSAYNLQQENPFAVGGD--WKTLWNWKG 472

Query: 216  PERVRSFAWQIMHGKLPTRVYCSRWS-GDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLL 392
            P R+++F W   HG++ T    S+W  G +  C  C   DET+IHVLRDC  +  VW  L
Sbjct: 473  PHRIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRL 532

Query: 393  VLQDMRSNFFGYDFGAWVRFNV---GVMDGSG-WRNVWATTCFFLWGWRNRTMYDPSFSR 560
            +  +  +NFF +D   WV  N+   G+ D    W+  + TTC++LW WRN+++++  F R
Sbjct: 533  IPHNYITNFFSFDCREWVFNNLNKKGIGDNPATWQTTFMTTCWYLWNWRNKSIFEIGFQR 592

Query: 561  PAFPATVVQRYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXX 740
            P+ P  V+Q++  E +    +L       KET+ + W     GWV +N D          
Sbjct: 593  PSNPTLVIQKFTREIE-DNTKLVHKSSHQKETIYIGWMRPPFGWVKLNCDGAWKGSGTLA 651

Query: 741  XXXXLVRDHHGRWLGGFTRFIGETHAY 821
                L+RD  GRW+ G+ + IG   A+
Sbjct: 652  GCGGLLRDSDGRWIKGYFKKIGMCDAF 678


>dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subterraneum]
          Length = 875

 Score =  162 bits (411), Expect = 1e-41
 Identities = 94/268 (35%), Positives = 130/268 (48%), Gaps = 5/268 (1%)
 Frame = +3

Query: 33   KQIILLINCMPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVN-WKTIWKL 209
            + I+  I  +P P    GSD        +  F+V+  Y  L        E N W  +WKL
Sbjct: 491  ENIMNKIAAIPPPCEENGSDEPVGICSNSNGFSVTIMYEQLCGIVRDNVESNNWIKVWKL 550

Query: 210  DVPERVRSFAWQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKL 389
            +VPERVR F W ++H +L T    SR     + C +C  ++ET +H +RDC L I  W  
Sbjct: 551  NVPERVRCFVWLLLHDRLLTNYRKSRMGLGHAMCNYCGDLEETTLHAIRDCALIIPFWLQ 610

Query: 390  LVLQDMRSNFFGYDFGAWVRFNV----GVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFS 557
            +V  + RS+FF  D   W+  N+        GS W + WATTC  LW WRN+  +D  F 
Sbjct: 611  VVPMEDRSSFFMEDTQDWISRNLMKGRTRRRGSDWCDFWATTCHSLWMWRNKEAHDEEFV 670

Query: 558  RPAFPATVVQRYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXX 737
            RP  P   VQ+ V EYQ  K   +   G     V + WKP    +V +NTD         
Sbjct: 671  RPMQPVNYVQKRVEEYQHAKQASDLLDGREYTLVDIGWKPPSGSFVKLNTD-GARKDNNK 729

Query: 738  XXXXXLVRDHHGRWLGGFTRFIGETHAY 821
                 ++R +HG WLGGF + +GE  A+
Sbjct: 730  AGCGGIIRGNHGEWLGGFAKGVGECSAF 757


>gb|PNY15498.1| ribonuclease H [Trifolium pratense]
          Length = 378

 Score =  155 bits (393), Expect = 2e-41
 Identities = 86/248 (34%), Positives = 121/248 (48%), Gaps = 6/248 (2%)
 Frame = +3

Query: 81  MGSDLLFWPKERAGNFTVSSAY--VYLRNATSLGNEVNWKTIWKLDVPERVRSFAWQIMH 254
           MG D   WP    G+++ SSAY  + + + T +  +  W  I KL+V ERVR F W + +
Sbjct: 9   MGRDQCLWPGNSRGDYSASSAYFMMSMEDNTEITQQRIWSHILKLEVNERVRCFVWLMSY 68

Query: 255 GKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMRSNFFGYDF 434
           G+L T  Y  +       C  C    ETI HV+RDCP+A  VW  +V   +R NFF    
Sbjct: 69  GRLLTNHYKHKMHLGYPYCRRCSLQVETISHVMRDCPIARVVWMHIVPHKLRRNFFNTGK 128

Query: 435 GAWVRFNV----GVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRPAFPATVVQRYVHE 602
             W+  NV       DG  W  +WA  C +LW WRN+  +D + SRP      +++   +
Sbjct: 129 DVWIAQNVLYNWENNDGIKWNALWAIACHYLWLWRNKETHDSNVSRPPEAWVWIRKIAKD 188

Query: 603 YQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXXXXXLVRDHHGRWL 782
           Y++        Q GV+  + V W+P   GWV VNTD              L+R     WL
Sbjct: 189 YKIATAMAEELQKGVRTQIQVKWQPPSIGWVKVNTD-GASKSDGSASCGGLIRGSDCEWL 247

Query: 783 GGFTRFIG 806
           GGF++ IG
Sbjct: 248 GGFSKHIG 255


>gb|PNY10278.1| ribonuclease H [Trifolium pratense]
          Length = 374

 Score =  152 bits (385), Expect = 3e-40
 Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 4/221 (1%)
 Frame = +3

Query: 60  MPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVPERVRSFA 239
           +P P  +   D+ +WP  + GNFTV+SAY  L +     N   W  +WK+   ERVR+F 
Sbjct: 132 IPPPEDAQDDDINYWPAGKHGNFTVASAYNILADINCQHNNTTWNIVWKIQACERVRAFV 191

Query: 240 WQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMRSNF 419
           W + HG++ T    S+ +     C  C    ET +HVLRDC  ++ VW  +V    R  F
Sbjct: 192 WLLKHGRMLTHYRMSKMNLGLPFCTFCEDEIETELHVLRDCSKSMQVWLNIVHDSSREVF 251

Query: 420 FGYDFGAWVRFN----VGVMDGSGWRNVWATTCFFLWGWRNRTMYDPSFSRPAFPATVVQ 587
           F  DF  W+  N    +  +D + W++ WA  C  LW WRN+  +   F+RP  P  V++
Sbjct: 252 FNADFQQWINMNLHGDIQGVDVNNWQSYWAIACHALWTWRNKEKHYDCFNRPYRPHLVIK 311

Query: 588 RYVHEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTD 710
           +Y+ EY+      +     ++    + W P  +GW+ +N+D
Sbjct: 312 QYMTEYEKSNQVDHNVVVLLRVMRQIGWCPPSEGWIIINSD 352


>dbj|GAU50328.1| hypothetical protein TSUD_290640 [Trifolium subterraneum]
          Length = 474

 Score =  154 bits (388), Expect = 6e-40
 Identities = 88/242 (36%), Positives = 122/242 (50%), Gaps = 8/242 (3%)
 Frame = +3

Query: 120 GNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVPERVRSFAWQIMHGKLPTRVYCSRWSGD 299
           G F+++SAY  + N +    E+ W  IWKL VPER+ SF W + H +L T    S+    
Sbjct: 175 GQFSIASAYKLVCNFSDNSREMEWLRIWKLKVPERITSFIWLVRHDRLLTNYRKSKMHIG 234

Query: 300 TSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMRSNFFGYDFGAWVRFNVGVMDGSG 479
              C HCV + E  +HVLRDCPLA +VW  L+    R N F  +   W+  N+    G  
Sbjct: 235 EPWCTHCVDIVEDTLHVLRDCPLAKSVWCNLLNNAARENSFAAELKDWIHMNLQQDLGRN 294

Query: 480 ----WRNVWATTCFFLWGWRNRTMYDPSFSRPAFPATVVQRYV---HEYQVGKNQLNPAQ 638
               W  VWAT+C  LW WRNR  +D +  RP  P     RY+   H   +  N  N A 
Sbjct: 295 MHMEWYGVWATSCHSLWTWRNRETHDETRLRPIHP----WRYILDCHLQYMAANVNNIAL 350

Query: 639 GGVKE-TVLVSWKPAVDGWVTVNTDXXXXXXXXXXXXXXLVRDHHGRWLGGFTRFIGETH 815
              ++  V ++W+    GWV +NTD              L+R+ HG+W+GGF+R +G   
Sbjct: 351 STRQQMEVDIAWQQPEAGWVVLNTD-GASKMDVAAGCGGLLRNSHGQWIGGFSRHLGICS 409

Query: 816 AY 821
           AY
Sbjct: 410 AY 411


>dbj|GAU43930.1| hypothetical protein TSUD_28720 [Trifolium subterraneum]
          Length = 432

 Score =  152 bits (384), Expect = 1e-39
 Identities = 85/255 (33%), Positives = 121/255 (47%), Gaps = 4/255 (1%)
 Frame = +3

Query: 69  PAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVPERVRSFAWQI 248
           P  + G D        A NF+V++ Y  L N  S   +  W  IWKL VPERVR+  W +
Sbjct: 135 PNDAYGKDEFIVAGADASNFSVAAMYSILCNHDSSLMDAAWIKIWKLGVPERVRTLVWLL 194

Query: 249 MHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMRSNFFGY 428
            H +L T     R    T+ C  C  + ET +HV RDCP A+ VW  +VLQ+ R  FF  
Sbjct: 195 THDRLLTNYNKHRMGLGTALCSFCRDI-ETALHVFRDCPKAMQVWLNVVLQEARQKFFHE 253

Query: 429 DFGAWVRFNVGVM----DGSGWRNVWATTCFFLWGWRNRTMYDPSFSRPAFPATVVQRYV 596
           D   W+ +N+       +G  W N WA  C  LW WRN+ ++   F  P  P   +   +
Sbjct: 254 DLSGWINYNLDYCWSGNNGVRWSNFWAMGCHRLWQWRNQEVHSDDFQWPQRPVQHISSAI 313

Query: 597 HEYQVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXXXXXXXLVRDHHGR 776
           +EY   K   +     V    L+ WKP   G V +NTD              ++R+  GR
Sbjct: 314 YEYSQAKMAGSDIVNKVHGVRLIGWKPPDIGVVKLNTD-GACKDDRTAGCGGIIRNSDGR 372

Query: 777 WLGGFTRFIGETHAY 821
           W+ GF + +G+ ++Y
Sbjct: 373 WIDGFAKSLGKCNSY 387


>gb|PNY15946.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1195

 Score =  155 bits (393), Expect = 3e-39
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 7/221 (3%)
 Frame = +3

Query: 69   PAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDVPERVRSFAWQI 248
            P    G D   W  ++ G F+VSSAY+ + N T   ++  W  IW++ V ER+RSF W +
Sbjct: 968  PTDDNGMDQRGWKGDKNGEFSVSSAYLMICNFTENFDDTIWAKIWRITVAERIRSFIWLV 1027

Query: 249  MHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLVLQDMRSNFFGY 428
             H ++ T    S+ +     C HCV   E ++H+LRDCPLA A+W  ++  ++R+ FF  
Sbjct: 1028 KHNRILTNYRKSKMNLGGPWCNHCVDEIEDVLHILRDCPLAKAIWCNVLRMEVRTTFFNL 1087

Query: 429  DFGAWVRFNVGVMDGSG-----WRNVWATTCFFLWGWRNRTMYDPSFSRPAFPATVVQRY 593
                W+ FN+    G       W   WAT+C  LW WRN   +D +F RP  P   V ++
Sbjct: 1088 QHQEWITFNITKELGKDHVTVPWNAFWATSCHMLWKWRNSEEHDATFMRPVQPWKEVYKW 1147

Query: 594  VHEYQ--VGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTD 710
               Y   +    ++ +       V ++WKP ++GWV +NTD
Sbjct: 1148 TTYYMNAMQNKVMHNSNSTASVCVSIAWKPPINGWVCLNTD 1188


>ref|XP_016162229.1| uncharacterized protein LOC107605009 [Arachis ipaensis]
          Length = 1371

 Score =  155 bits (391), Expect = 6e-39
 Identities = 84/263 (31%), Positives = 127/263 (48%), Gaps = 6/263 (2%)
 Frame = +3

Query: 36   QIILLINCMPAPAPSMGSDLLFWPKERAGNFTVSSAYVYLRNATSLGNEVNWKTIWKLDV 215
            +++  I  +P P  S G D + W     G+FTV+ AY  L N +S+  +  WK IW+   
Sbjct: 986  EVLNKIRSIPPPKDSQGEDRIRWNHTANGDFTVALAYRILINHSSMETKRIWKVIWRWKG 1045

Query: 216  PERVRSFAWQIMHGKLPTRVYCSRWSGDTSGCYHCVGVDETIIHVLRDCPLAIAVWKLLV 395
            PER+R F WQ  HG+L T    SR       C+ C  + ET +H LRDCP A ++W  LV
Sbjct: 1046 PERIRVFMWQAAHGRLLTASRKSRMMRTDPNCHRCHRILETGLHALRDCPYAASIWVELV 1105

Query: 396  LQDMRSNFFGYDFGAWVRFN----VGVMDGSGWRNVWATTCFFLWGWRNRTMY-DPSFSR 560
                 + FFG +   W+ FN    +G      W + +   C+ +W WRN+ ++     +R
Sbjct: 1106 QPSAIAVFFGMNLAEWLDFNLSNQIGKSSNHNWIDEFFVACWRIWKWRNQDLFSQQQATR 1165

Query: 561  PAFPATVVQRYVHEY-QVGKNQLNPAQGGVKETVLVSWKPAVDGWVTVNTDXXXXXXXXX 737
            P    T+++  V  Y +  K +L   +    +    +W+P   GWV +NTD         
Sbjct: 1166 PRNAVTIIRDSVSNYKEAVKKKLIKGESENIQNRRQAWEPPPRGWVKLNTDGSVKEEAKK 1225

Query: 738  XXXXXLVRDHHGRWLGGFTRFIG 806
                 L+R   G W+GGFT  +G
Sbjct: 1226 AGCGGLLRTQQGEWIGGFTANLG 1248