BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00024126
         (1043 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX81608.1| ribonuclease H [Trifolium pratense]                    245   2e-72
dbj|GAU19541.1| hypothetical protein TSUD_303540 [Trifolium subt...   240   3e-70
dbj|GAU51253.1| hypothetical protein TSUD_412460, partial [Trifo...   238   9e-70
dbj|GAU50328.1| hypothetical protein TSUD_290640 [Trifolium subt...   232   7e-69
gb|PNX94788.1| ribonuclease H [Trifolium pratense]                    214   2e-63
dbj|GAU43930.1| hypothetical protein TSUD_28720 [Trifolium subte...   217   2e-63
dbj|GAU43243.1| hypothetical protein TSUD_241340 [Trifolium subt...   214   3e-63
gb|PNY12420.1| ribonuclease H [Trifolium pratense]                    215   4e-62
gb|PNY03121.1| ribonuclease H, partial [Trifolium pratense]           212   3e-60
dbj|GAU25543.1| hypothetical protein TSUD_259770 [Trifolium subt...   213   5e-60
gb|PNY12120.1| 3-ketoacyl-CoA synthase, partial [Trifolium prate...   212   6e-60
gb|PNY15498.1| ribonuclease H [Trifolium pratense]                    205   2e-59
gb|PNY06537.1| ribonuclease H, partial [Trifolium pratense]           216   3e-59
gb|PNX72990.1| ribonuclease H, partial [Trifolium pratense]           214   3e-59
dbj|GAU31120.1| hypothetical protein TSUD_212270 [Trifolium subt...   201   2e-58
gb|PNY01766.1| ribonuclease H [Trifolium pratense]                    199   3e-58
dbj|GAU10071.1| hypothetical protein TSUD_422240 [Trifolium subt...   199   5e-58
dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subt...   209   4e-57
gb|PNX79929.1| ribonuclease H, partial [Trifolium pratense]           201   6e-55
gb|PNY10278.1| ribonuclease H [Trifolium pratense]                    193   8e-55

>gb|PNX81608.1| ribonuclease H [Trifolium pratense]
          Length = 630

 Score =  245 bits (626), Expect = 2e-72
 Identities = 114/261 (43%), Positives = 163/261 (62%), Gaps = 4/261 (1%)
 Frame = -3

Query: 1041 SDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMN 862
            ++G+F+IASAY LL  F        W ++W +   ER+R F+W++ H RLLTN RK++M+
Sbjct: 274  ANGEFSIASAYTLLCRFNDDAWEADWLQIWRLRVPERIRTFIWIIRHDRLLTNYRKSKMH 333

Query: 861  LGTPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNM----G 694
            +  P C+HC  + E TL VLRDCPLA +VW N+++ K +  F  + L +WI  NM    G
Sbjct: 334  ISEPWCNHCVDVVEDTLHVLRDCPLAKSVWCNLLNGKDKDWFFTAALDEWIILNMKKQLG 393

Query: 693  TDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKI 514
             D  L WA++WA +CH +W+WRN+  H +  + P +PW L +     Y   +   I    
Sbjct: 394  RDNNLSWASVWATSCHFLWLWRNRETHGDSRLRPLQPWKLILKWVMQYFEADVSGIVIAN 453

Query: 513  KTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAY 334
            + KV   + W  P +GWL LN+DGAS      AGCGGL+R+  G W+ G+SR+LG CNAY
Sbjct: 454  RQKVEITVTWQCPEDGWLSLNTDGASRGHTS-AGCGGLLRNSEGQWLGGFSRNLGRCNAY 512

Query: 333  VSELWGVYEGIILAMTKGYKK 271
            ++ELWGV++G+ LA  KG KK
Sbjct: 513  IAELWGVHDGLCLARDKGAKK 533


>dbj|GAU19541.1| hypothetical protein TSUD_303540 [Trifolium subterraneum]
          Length = 642

 Score =  240 bits (612), Expect = 3e-70
 Identities = 115/261 (44%), Positives = 154/261 (59%), Gaps = 4/261 (1%)
 Frame = -3

Query: 1041 SDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMN 862
            SDG FTIASAY LL  F        W  +W +   ERVR FVWL+ H RLLTN RK++M 
Sbjct: 290  SDGSFTIASAYTLLCRFNDEAWDTRWLHIWRLKVPERVRSFVWLVRHDRLLTNYRKSKMQ 349

Query: 861  LGTPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDN----MG 694
            L  P C+HC  I E T+ VLRDCPLA  VW N+++   R  F  ++L DWI  N    +G
Sbjct: 350  LCEPWCNHCIDIVEDTMHVLRDCPLAKVVWSNLLNDTARYSFYHTNLEDWICMNLHKELG 409

Query: 693  TDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKI 514
             +T + W+ +WA  CH++W+WRN+  H +  V P + W   +   + Y   +   I   +
Sbjct: 410  KETNVRWSCVWAVGCHVLWLWRNRECHGDMRVRPTQLWQTILYMVQQYKQADIKSIALPV 469

Query: 513  KTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAY 334
              KV   IGW  P   W+KLN+DGAS        CGGL+R+ NG W+ G+SR LG CNAY
Sbjct: 470  HQKVEVPIGWNKPAGDWIKLNTDGASRPR-----CGGLLRNSNGQWLGGFSRHLGRCNAY 524

Query: 333  VSELWGVYEGIILAMTKGYKK 271
            ++ELWGV +G+     +G+KK
Sbjct: 525  LAELWGVLDGLNFTYERGHKK 545


>dbj|GAU51253.1| hypothetical protein TSUD_412460, partial [Trifolium subterraneum]
          Length = 609

 Score =  238 bits (607), Expect = 9e-70
 Identities = 104/259 (40%), Positives = 157/259 (60%), Gaps = 4/259 (1%)
 Frame = -3

Query: 1035 GKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLG 856
            G F++A+AY  L           W ++W +   ER+R F+W + H R+LTN R A+ NL 
Sbjct: 264  GNFSVATAYQYLTGVHLREYEKKWFKIWRLETTERIRVFMWQVLHDRILTNWRTAKWNLT 323

Query: 855  TPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGTDT--- 685
             P C +C  +EE+TL VLRDCPLA+ VW +++  + R +F    LH WI  N+ T     
Sbjct: 324  DPYCSYCEHMEETTLHVLRDCPLAVEVWQHLLEEEHRGRFFIGQLHQWIDLNLSTSIGIR 383

Query: 684  -QLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKIKT 508
              L+W A+W   C  +W WRNK +H  +    WKPWS  +N   +Y   ++ +  +K   
Sbjct: 384  RDLDWDAVWVTTCFWLWKWRNKRVHEPNHTSQWKPWSFILNLVNEYKYTKQARETEKPCQ 443

Query: 507  KVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVS 328
            K  K I W+ P +GW+ LN+DGA+  + GIAGCGG++R+ NG W+CG+S+ LG  +AY++
Sbjct: 444  KELKDIKWIYPAKGWVCLNTDGAAKSDTGIAGCGGILRNDNGIWICGFSKFLGNTSAYMA 503

Query: 327  ELWGVYEGIILAMTKGYKK 271
            E+WG+YEG+ +A   G ++
Sbjct: 504  EVWGLYEGLSMARNLGIER 522


>dbj|GAU50328.1| hypothetical protein TSUD_290640 [Trifolium subterraneum]
          Length = 474

 Score =  232 bits (592), Expect = 7e-69
 Identities = 109/260 (41%), Positives = 158/260 (60%), Gaps = 4/260 (1%)
 Frame = -3

Query: 1038 DGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNL 859
            +G+F+IASAY L+ NF+       W R+W +   ER+  F+WL+ H RLLTN RK++M++
Sbjct: 174  NGQFSIASAYKLVCNFSDNSREMEWLRIWKLKVPERITSFIWLVRHDRLLTNYRKSKMHI 233

Query: 858  GTPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDN----MGT 691
            G P C HC  I E TL VLRDCPLA +VW N+++   R     ++L DWI  N    +G 
Sbjct: 234  GEPWCTHCVDIVEDTLHVLRDCPLAKSVWCNLLNNAARENSFAAELKDWIHMNLQQDLGR 293

Query: 690  DTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKIK 511
            +  +EW  +WA +CH +W WRN+  H+E  + P  PW   ++    Y     + I    +
Sbjct: 294  NMHMEWYGVWATSCHSLWTWRNRETHDETRLRPIHPWRYILDCHLQYMAANVNNIALSTR 353

Query: 510  TKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYV 331
             ++   I W  P  GW+ LN+DGAS  +   AGCGGL+R+ +G W+ G+SR LG C+AY+
Sbjct: 354  QQMEVDIAWQQPEAGWVVLNTDGASKMDVA-AGCGGLLRNSHGQWIGGFSRHLGICSAYL 412

Query: 330  SELWGVYEGIILAMTKGYKK 271
            +ELWGV +G+ LA  +G  K
Sbjct: 413  AELWGVLDGLRLARERGITK 432


>gb|PNX94788.1| ribonuclease H [Trifolium pratense]
          Length = 509

 Score =  214 bits (546), Expect(2) = 2e-63
 Identities = 100/262 (38%), Positives = 161/262 (61%), Gaps = 7/262 (2%)
 Frame = -3

Query: 1035 GKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLG 856
            G+FT+++AY LL           W ++W I + ER++ F+W L H RL+T  R AR  +G
Sbjct: 153  GQFTVSAAYQLLTEAAEENDEKKWTQIWKIDSTERIKVFIWQLAHDRLMTKARLARWQIG 212

Query: 855  TPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNM----GTD 688
               C  C   EEST+ V+RDCP A+ +W +++  + R  F   +  +WI  N+    G +
Sbjct: 213  NSYCDSCTQFEESTIHVVRDCPRAVHLWRHLISNQERGYFFVIEFDEWIHLNLNNKFGQN 272

Query: 687  TQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDY--HLLEKDQI-NKK 517
               +W AIWA  C+L+W+WRNK IH+++FV+P +PW + ++    Y   +L ++Q+ + +
Sbjct: 273  YGNDWKAIWATTCYLLWLWRNKSIHDDEFVIPERPWQVVMDYVAAYKHSMLTEEQVGHGR 332

Query: 516  IKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNA 337
            ++ +V   I W+ P  GW  LNSDGA+      AGCGG++R++NG W+ G++++LG   A
Sbjct: 333  VQQQVD--ITWLAPPPGWFALNSDGAAKLSESKAGCGGVLRNENGNWIEGFTKALGDTTA 390

Query: 336  YVSELWGVYEGIILAMTKGYKK 271
            Y++ELWG+YEG+ LA  +   K
Sbjct: 391  YMAELWGIYEGLRLAQRRDVMK 412



 Score = 58.2 bits (139), Expect(2) = 2e-63
 Identities = 29/64 (45%), Positives = 43/64 (67%)
 Frame = -1

Query: 272 KLIIETDSMLIADILQRKLLGRSDGWSLVRKIRHELTDNSWQIVILHCYKEANRCTHTLA 93
           KL + TDS +IA  LQ +  G + G +L++KIR  L D  W++ I+H ++EANRC   LA
Sbjct: 412 KLELRTDSQVIAQSLQDRKRGSNMGCALLKKIR-SLLDGPWEVKIIHVFREANRCADMLA 470

Query: 92  HIGS 81
           ++GS
Sbjct: 471 NMGS 474


>dbj|GAU43930.1| hypothetical protein TSUD_28720 [Trifolium subterraneum]
          Length = 432

 Score =  217 bits (552), Expect = 2e-63
 Identities = 110/259 (42%), Positives = 153/259 (59%), Gaps = 7/259 (2%)
 Frame = -3

Query: 1029 FTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGTP 850
            F++A+ Y++L N     +   W ++W +   ERVR  VWLL H RLLTN  K RM LGT 
Sbjct: 154  FSVAAMYSILCNHDSSLMDAAWIKIWKLGVPERVRTLVWLLTHDRLLTNYNKHRMGLGTA 213

Query: 849  RCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNM----GTDTQ 682
             C  CR I E+ L V RDCP A+ VWLN+V  + R KF   DL  WI+ N+      +  
Sbjct: 214  LCSFCRDI-ETALHVFRDCPKAMQVWLNVVLQEARQKFFHEDLSGWINYNLDYCWSGNNG 272

Query: 681  LEWAAIWANACHLIWMWRNKIIHNEDFVMPWKP---WSLPINETKDYHLLEKDQINKKIK 511
            + W+  WA  CH +W WRN+ +H++DF  P +P    S  I E     +   D +N   K
Sbjct: 273  VRWSNFWAMGCHRLWQWRNQEVHSDDFQWPQRPVQHISSAIYEYSQAKMAGSDIVN---K 329

Query: 510  TKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYV 331
                ++IGW PP  G +KLN+DGA  K+   AGCGG++R+ +G W+ G+++SLG CN+YV
Sbjct: 330  VHGVRLIGWKPPDIGVVKLNTDGAC-KDDRTAGCGGIIRNSDGRWIDGFAKSLGKCNSYV 388

Query: 330  SELWGVYEGIILAMTKGYK 274
            +ELW V EG+  A   GY+
Sbjct: 389  AELWEVLEGLKYARRLGYQ 407


>dbj|GAU43243.1| hypothetical protein TSUD_241340 [Trifolium subterraneum]
          Length = 371

 Score =  214 bits (546), Expect = 3e-63
 Identities = 101/251 (40%), Positives = 146/251 (58%), Gaps = 4/251 (1%)
 Frame = -3

Query: 1041 SDGKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMN 862
            ++G  +++S Y  L NF      + WK +W +   ERVR F+WL+ H RLLTN +K +M 
Sbjct: 115  ANGGISVSSMYKHLCNFDVNDDVNDWKDIWRLKVPERVRTFIWLMRHNRLLTNEKKHKMG 174

Query: 861  LGTPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDN----MG 694
            LG+  C +C +I E TL  LRDCP  + +WLN+V+   R  F   DL  WI+ N    MG
Sbjct: 175  LGSAMCDYCGSIIEDTLHALRDCPQTMPIWLNLVNEHARANFFNGDLFYWINYNMSNYMG 234

Query: 693  TDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKI 514
                +EW  +W  ACH +W WRNK  H E F  P       +N+ K Y   + + +    
Sbjct: 235  KYNGVEWKIMWVVACHQLWFWRNKEKHEESFSRPSNAVLHVMNQVKYYQDADCENVIVVS 294

Query: 513  KTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAY 334
             T+   M+GW  P  GW+KLN+DG+  K+ G +GCGG++R   G W+ G+++ +G  N Y
Sbjct: 295  PTREVVMVGWKYPPSGWVKLNTDGSCRKD-GRSGCGGVIRGSEGEWIGGFAKFVGRSNVY 353

Query: 333  VSELWGVYEGI 301
            V+ELWGV+EG+
Sbjct: 354  VAELWGVFEGL 364


>gb|PNY12420.1| ribonuclease H [Trifolium pratense]
          Length = 1341

 Score =  215 bits (547), Expect(2) = 4e-62
 Identities = 102/248 (41%), Positives = 149/248 (60%), Gaps = 5/248 (2%)
 Frame = -3

Query: 1029 FTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGTP 850
            F+++S YN L +F G      W  +W +   ERVR FVWLL H RLLTN  K+ M LG  
Sbjct: 989  FSVSSMYNNLCDFHGNESDSTWNMIWKLQVPERVRAFVWLLMHDRLLTNSTKSSMGLGHA 1048

Query: 849  RCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGT----DTQ 682
             C++C  + E+ + V+RDCP A+ +W+ +V    R  FL  ++ +W+  N+      D +
Sbjct: 1049 MCNYCGDVVETAIHVMRDCPKAMQIWVTVVPANDRGSFLMGNVKNWVCFNLQNSVTWDRR 1108

Query: 681  LEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDY-HLLEKDQINKKIKTK 505
             +W   WA ACH +W WRNK IH+EDFV P +P    +    DY H    + +  + +T+
Sbjct: 1109 GQWREYWAQACHCLWFWRNKDIHDEDFVRPTRPVQQVMKLLGDYMHAFNNNNVVLE-RTR 1167

Query: 504  VTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVSE 325
              + IGW PP   ++KLN+DGA  KE   AGCGG++R   G W+ GY++ +G C+A+V+E
Sbjct: 1168 SIRWIGWSPPKMNFVKLNTDGA-YKENRAAGCGGVIRGCEGEWLGGYAKGVGLCSAFVAE 1226

Query: 324  LWGVYEGI 301
            LWGV EG+
Sbjct: 1227 LWGVLEGL 1234



 Score = 53.1 bits (126), Expect(2) = 4e-62
 Identities = 27/87 (31%), Positives = 50/87 (57%)
 Frame = -1

Query: 263  IETDSMLIADILQRKLLGRSDGWSLVRKIRHELTDNSWQIVILHCYKEANRCTHTLAHIG 84
            +  DS  +  +++ + LG S G +LV++I   L D +W++ I H Y+EAN+C   LA++G
Sbjct: 1247 LNIDSEAVVKVVKARQLGSSSGAALVKQIWRML-DMNWKVEISHTYREANKCADALANLG 1305

Query: 83   SLQIENRVYHDIMPAYSPTINSKKKSG 3
            S   +  ++ D  P++   I +  + G
Sbjct: 1306 STLDKELIFFDDCPSHIREICTADRLG 1332


>gb|PNY03121.1| ribonuclease H, partial [Trifolium pratense]
          Length = 952

 Score =  212 bits (539), Expect(2) = 3e-60
 Identities = 98/247 (39%), Positives = 143/247 (57%), Gaps = 4/247 (1%)
 Frame = -3

Query: 1029 FTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGTP 850
            F++AS YN +  F       +W  +W +   ERVR FVWLL H RLLTN  K  M L   
Sbjct: 621  FSVASMYNNICGFHSDATVGMWTSIWKLKVPERVRAFVWLLTHDRLLTNSLKRNMGLSHA 680

Query: 849  RCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGTDT----Q 682
             CH+C  +EE+TL V+RDCP A+ +W  ++  + + K++  DL  W+  N+        +
Sbjct: 681  MCHYCGDVEETTLHVMRDCPKAMEIWAVVIPVQEKGKYMIGDLKQWVCYNLQNSITWSGK 740

Query: 681  LEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKIKTKV 502
              W   WA ACH +W WRNK +H+ED++ P  P    + +  +Y     +      +TK 
Sbjct: 741  GSWRDYWAQACHCLWFWRNKELHDEDYMRPINPAHQVLKQRWEYIAAATNNSVVLERTKE 800

Query: 501  TKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVSEL 322
             + IGW PP   ++KLN+DGA  KE   AGCGG++R   G WM G+++ +G C+A+V+EL
Sbjct: 801  VRWIGWRPPKPNFVKLNTDGA-YKENKAAGCGGVIRGSEGEWMGGFAKGVGLCSAFVAEL 859

Query: 321  WGVYEGI 301
            WGV EG+
Sbjct: 860  WGVLEGL 866



 Score = 50.1 bits (118), Expect(2) = 3e-60
 Identities = 23/78 (29%), Positives = 45/78 (57%)
 Frame = -1

Query: 272  KLIIETDSMLIADILQRKLLGRSDGWSLVRKIRHELTDNSWQIVILHCYKEANRCTHTLA 93
            K+ +  DS  +  +++ + +  S G +LV++I   L D +W++ + H Y+EAN+C   LA
Sbjct: 876  KVELNIDSEAVVQVVKNRXMSSSLGVALVKQI-WRLLDMNWEVEVSHTYREANKCADALA 934

Query: 92   HIGSLQIENRVYHDIMPA 39
            ++G       V++D  P+
Sbjct: 935  NLGCSLANEIVFYDSCPS 952


>dbj|GAU25543.1| hypothetical protein TSUD_259770 [Trifolium subterraneum]
          Length = 633

 Score =  213 bits (542), Expect = 5e-60
 Identities = 109/258 (42%), Positives = 151/258 (58%), Gaps = 5/258 (1%)
 Frame = -3

Query: 1029 FTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGTP 850
            F++ S YN L  F       +W RVW + A ERVR F+WL+ H +LLTN  K+ M L   
Sbjct: 286  FSVTSMYNNLCGFNKDDAHYMWGRVWKLKAPERVRTFIWLVMHNKLLTNSLKSVMGLSHA 345

Query: 849  RCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGTDT----Q 682
             C +CR +EE+TL VLRDC LA  +W ++V    R     S L +WI  N+        +
Sbjct: 346  MCSYCRVVEETTLHVLRDCTLAKKIWSHVVPLASR-----SGLQEWICFNLNNFVMGICE 400

Query: 681  LEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDY-HLLEKDQINKKIKTK 505
              W   WA AC+L+W WRNK +H E F+ P +P     N   DY H ++   I    +++
Sbjct: 401  GTWNVFWAMACYLLWNWRNKELHVEGFLRPNRPVQHVRNMAADYIHAMQNSSIMVN-RSQ 459

Query: 504  VTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVSE 325
            V   IGWVPP   ++KLN+DGAS K+  +AGCGG+VR   G W+ GY++ +G CNA+V+E
Sbjct: 460  VASRIGWVPPRADYIKLNTDGAS-KKMQLAGCGGVVRGSQGEWIGGYAKCVGMCNAFVAE 518

Query: 324  LWGVYEGIILAMTKGYKK 271
            LWGV EG+      G++K
Sbjct: 519  LWGVLEGLRFVRNMGFRK 536


>gb|PNY12120.1| 3-ketoacyl-CoA synthase, partial [Trifolium pratense]
          Length = 609

 Score =  212 bits (540), Expect = 6e-60
 Identities = 93/228 (40%), Positives = 148/228 (64%)
 Frame = -3

Query: 954 WSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGTPRCHHCRTIEESTLRVLRDCPLALTV 775
           W I   E VR   W  C    LT  R+++M++GTP CHHC++  E+TL VLRDCPLA+ +
Sbjct: 139 WMIRNGECVR--AWEHCW---LTEGRRSQMHIGTPYCHHCQSTIETTLHVLRDCPLAMII 193

Query: 774 WLNIVHPKLRTKFLESDLHDWISDNMGTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVM 595
           W+N V  +++ +F ++DL+DWI  N+    +  W   WA  CH +W WRNK+IH+E F+M
Sbjct: 194 WVNSVDVQIQNQFFDTDLNDWIELNI---NKPRWVQFWATGCHALWTWRNKLIHDESFIM 250

Query: 594 PWKPWSLPINETKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIA 415
           P +PW      T+ Y +    Q    +  +V   + W+P   GW+++N+DGAS K   +A
Sbjct: 251 PLQPWKEIHRSTQLYEMHSSVQSTVNLVERVVTNVRWLPLEPGWVRINTDGAS-KGDEVA 309

Query: 414 GCGGLVRDQNGAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGYKK 271
           GCGG+++ ++G+W+CG+++ +G C+AYV+ELWGV E + +A  +G+++
Sbjct: 310 GCGGMIKGEDGSWICGFTKGVGVCSAYVAELWGVLEALQIARARGFRQ 357


>gb|PNY15498.1| ribonuclease H [Trifolium pratense]
          Length = 378

 Score =  205 bits (521), Expect = 2e-59
 Identities = 102/265 (38%), Positives = 157/265 (59%), Gaps = 8/265 (3%)
 Frame = -3

Query: 1041 SDGKFTIASAYNLLNNFTGMPVTD--IWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKAR 868
            S G ++ +SAY +++      +T   IW  +  +   ERVR FVWL+ +GRLLTN  K +
Sbjct: 20   SRGDYSASSAYFMMSMEDNTEITQQRIWSHILKLEVNERVRCFVWLMSYGRLLTNHYKHK 79

Query: 867  MNLGTPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNM--- 697
            M+LG P C  C    E+   V+RDCP+A  VW++IV  KLR  F  +    WI+ N+   
Sbjct: 80   MHLGYPYCRRCSLQVETISHVMRDCPIARVVWMHIVPHKLRRNFFNTGKDVWIAQNVLYN 139

Query: 696  -GTDTQLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLE--KDQI 526
               +  ++W A+WA ACH +W+WRNK  H+ +   P + W       KDY +     +++
Sbjct: 140  WENNDGIKWNALWAIACHYLWLWRNKETHDSNVSRPPEAWVWIRKIAKDYKIATAMAEEL 199

Query: 525  NKKIKTKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGF 346
             K ++T++   + W PP  GW+K+N+DGAS K  G A CGGL+R  +  W+ G+S+ +G 
Sbjct: 200  QKGVRTQI--QVKWQPPSIGWVKVNTDGAS-KSDGSASCGGLIRGSDCEWLGGFSKHIGR 256

Query: 345  CNAYVSELWGVYEGIILAMTKGYKK 271
            C + V+ELWGV EG+ LA  +G+++
Sbjct: 257  CTSVVAELWGVSEGLKLARDRGFQR 281


>gb|PNY06537.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1770

 Score =  216 bits (551), Expect = 3e-59
 Identities = 105/244 (43%), Positives = 142/244 (58%), Gaps = 4/244 (1%)
 Frame = -3

Query: 1035 GKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLG 856
            G FT+ASAYN+L +         W  VW I A ERVR FVWLL HGR+LT+ R ++MNLG
Sbjct: 1527 GNFTVASAYNILADINCQHNNTTWNIVWKIQACERVRAFVWLLKHGRMLTHYRMSKMNLG 1586

Query: 855  TPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGTDTQ-- 682
             P C  C    E+ L VLRDC  ++ VWLNIVH   R  F  +D   WI+ N+  D Q  
Sbjct: 1587 LPFCTFCEDEIETELHVLRDCSKSMQVWLNIVHDSSREVFFNADFQQWINMNLHGDIQGV 1646

Query: 681  --LEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKIKT 508
                W + WA ACH +W WRNK  H++ F  P++P  +      +Y    +   N  +  
Sbjct: 1647 DVNNWQSYWAIACHALWTWRNKEKHDDSFNRPYRPHLVIKQYMTEYEKSSQVDHNVVVLP 1706

Query: 507  KVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVS 328
            +V + IGW PP EGW+ +N+DGA  KE   +GCGG+VR  +  W  G+++ LG C+  ++
Sbjct: 1707 RVMRQIGWCPPSEGWIIINTDGA-KKENHYSGCGGIVRGNSAEWCGGFAKGLGACSVEMA 1765

Query: 327  ELWG 316
            ELWG
Sbjct: 1766 ELWG 1769


>gb|PNX72990.1| ribonuclease H, partial [Trifolium pratense]
          Length = 892

 Score =  214 bits (546), Expect = 3e-59
 Identities = 95/246 (38%), Positives = 146/246 (59%), Gaps = 6/246 (2%)
 Frame = -3

Query: 1032 KFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGT 853
            +F++A  Y LL N+    + D+WK +W++   ER + F+W+  H RLLTN  KARM L  
Sbjct: 650  EFSVAVMYKLLCNYAEDDMEDVWKHLWALHVTERTKYFMWIALHDRLLTNAIKARMGLAH 709

Query: 852  PRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGTD----T 685
              C HCR  EE+++ VLRDC LA  +W+ +V  + R  F   D+  W   N+  D     
Sbjct: 710  GMCDHCREFEETSIHVLRDCTLAKNIWMMVVPQQARGSFFGGDIAHWFHINLIGDLVKVA 769

Query: 684  QLEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKI--K 511
             ++W   WANAC+ +W W NK  H ++F+ P  P  + +   ++Y+      +N+ +  K
Sbjct: 770  DIKWTEFWANACYCLWTWHNKEKHEDNFLRPINPVMVVLQRCREYN--SAAIVNRVVIEK 827

Query: 510  TKVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYV 331
             +    IGW PP+EGW+K+N+DGA  K    AGCGG++RD  G W+ G+++ +G C+A+ 
Sbjct: 828  PRSIAWIGWKPPVEGWIKINTDGAC-KGMATAGCGGIIRDSKGVWLGGFAKHIGICSAFT 886

Query: 330  SELWGV 313
            +ELWGV
Sbjct: 887  AELWGV 892


>dbj|GAU31120.1| hypothetical protein TSUD_212270 [Trifolium subterraneum]
          Length = 347

 Score =  201 bits (512), Expect = 2e-58
 Identities = 99/256 (38%), Positives = 143/256 (55%), Gaps = 4/256 (1%)
 Frame = -3

Query: 1035 GKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLG 856
            G+FTIASAYNLL  +  + V D+W  +W +   ERVR F+W L +GRL TN        G
Sbjct: 28   GRFTIASAYNLLCGYCELAVDDMWNNIWKMEVPERVRYFIWRLRYGRLPTNKACHPWGHG 87

Query: 855  TPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGTDTQL- 679
             P C HC  +EES + VLRDCPLA  VW +++  + R  F     H W   NM    +L 
Sbjct: 88   APYCGHCVGVEESIIHVLRDCPLAHDVWNHLLPMQTRLGFFTCHYHSWFQHNMLNYEKLE 147

Query: 678  ---EWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKIKT 508
               EW  +WA  C+ +W+WRNK   + +FV P     +  +  ++Y   +        K 
Sbjct: 148  GGNEWRVVWAVTCYHLWLWRNKETFDYEFVRPRYASQVIHHYVENYISAKSSSSFIMDKA 207

Query: 507  KVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVS 328
            ++   + W  P  GW+ LN+DGA   + G+AGCGG++RD  G W+ G+S+ +G  + + +
Sbjct: 208  RININVRWEAPRNGWISLNTDGA--VQHGVAGCGGVLRDYQGNWITGFSKFIGTASVFNA 265

Query: 327  ELWGVYEGIILAMTKG 280
            ELWGVY G+ LA  +G
Sbjct: 266  ELWGVYAGLCLARQRG 281


>gb|PNY01766.1| ribonuclease H [Trifolium pratense]
          Length = 300

 Score =  199 bits (507), Expect = 3e-58
 Identities = 102/238 (42%), Positives = 142/238 (59%), Gaps = 4/238 (1%)
 Frame = -3

Query: 978 VTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGTPRCHHCRTIEESTLRVLR 799
           +T+ W +VW I   ER+  FVWL+ H RLLT  R   +++G P C+ C  + E+TLRVLR
Sbjct: 1   MTNDWDKVWKIEVPERIPSFVWLIKHDRLLTRYRLNYVHIGEPYCYRCGNVMETTLRVLR 60

Query: 798 DCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGTDTQLEWAAIWANACHLIWMWRNKI 619
           DCPLA+ +WLN V+ +    F   DL DWI  N     Q +W   WA ACH +W WRNK+
Sbjct: 61  DCPLAMVIWLNAVNLQQCEAFFTVDLSDWIKINF---NQQKWVNFWAKACHALWTWRNKL 117

Query: 618 IHNEDFVMPWKPWSLPINETKDYHLLEKDQINKK----IKTKVTKMIGWVPPIEGWLKLN 451
           IH++DF+MP +PW L I+    ++    +QIN      ++ KV   I W P   GW+K+N
Sbjct: 118 IHDDDFIMPNRPW-LEISRRVQHY---ANQINVSSTVDLRNKVMTDIRW-PADPGWVKIN 172

Query: 450 SDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGY 277
           ++GAS K  G+AGCGG++R +         +   F   YV+ELWGV EG+ L   +GY
Sbjct: 173 TNGAS-KGGGVAGCGGVIRGEMVVGCVALLKVWVFVVPYVAELWGVLEGLQLVRARGY 229


>dbj|GAU10071.1| hypothetical protein TSUD_422240 [Trifolium subterraneum]
          Length = 306

 Score =  199 bits (506), Expect = 5e-58
 Identities = 92/235 (39%), Positives = 136/235 (57%), Gaps = 4/235 (1%)
 Frame = -3

Query: 969 IWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGTPRCHHCRTIEESTLRVLRDCP 790
           +W ++W +   ERVR FVW+L + RLLTN RK+RM LG   C+HC  + E+++ V+RDC 
Sbjct: 1   MWSKIWRLNVTERVRCFVWILAYDRLLTNYRKSRMGLGHAMCNHCGNVVETSMHVMRDCS 60

Query: 789 LALTVWLNIVHPKLRTKFLESDLHDWISDNMGT----DTQLEWAAIWANACHLIWMWRNK 622
           L    WL +V  + R+ F   DL  WI  N+ T    +    W  IWA ACH +W WRNK
Sbjct: 61  LVTPFWLQVVPMRERSTFFTEDLQQWIITNINTGRRGNNGSAWCDIWATACHCLWTWRNK 120

Query: 621 IIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKIKTKVTKMIGWVPPIEGWLKLNSDG 442
            +H+ ++V P           +DY    +     +   +    IGW PP   ++KLN+DG
Sbjct: 121 EMHDNNYVRPSHMVQHVYKIVEDYSQARRVNELMRNSERFFTQIGWQPPCGHFVKLNTDG 180

Query: 441 ASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGY 277
           A  K+  IAGCGG++R  +G W+ G+++ +G C+A+ +ELWGV EG+  A   G+
Sbjct: 181 AC-KDNNIAGCGGIIRGAHGEWLGGFAKGVGVCSAFAAELWGVLEGLQYARRLGF 234


>dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subterraneum]
          Length = 875

 Score =  209 bits (531), Expect = 4e-57
 Identities = 102/242 (42%), Positives = 148/242 (61%), Gaps = 10/242 (4%)
 Frame = -3

Query: 966  WKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLGTPRCHHCRTIEESTLRVLRDCPL 787
            W +VW +   ERVR FVWLL H RLLTN RK+RM LG   C++C  +EE+TL  +RDC L
Sbjct: 544  WIKVWKLNVPERVRCFVWLLLHDRLLTNYRKSRMGLGHAMCNYCGDLEETTLHAIRDCAL 603

Query: 786  ALTVWLNIVHPKLRTKFLESDLHDWISDNM--------GTDTQLEWAAIWANACHLIWMW 631
             +  WL +V  + R+ F   D  DWIS N+        G+D    W   WA  CH +WMW
Sbjct: 604  IIPFWLQVVPMEDRSSFFMEDTQDWISRNLMKGRTRRRGSD----WCDFWATTCHSLWMW 659

Query: 630  RNKIIHNEDFVMPWKPWSLPINETKDYHLLEK--DQINKKIKTKVTKMIGWVPPIEGWLK 457
            RNK  H+E+FV P +P +      ++Y   ++  D ++ +  T V   IGW PP   ++K
Sbjct: 660  RNKEAHDEEFVRPMQPVNYVQKRVEEYQHAKQASDLLDGREYTLVD--IGWKPPSGSFVK 717

Query: 456  LNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVSELWGVYEGIILAMTKGY 277
            LN+DGA  K+   AGCGG++R  +G W+ G+++ +G C+A+++ELWGV+EG+ LA    +
Sbjct: 718  LNTDGA-RKDNNKAGCGGIIRGNHGEWLGGFAKGVGECSAFIAELWGVFEGLSLAKRMCF 776

Query: 276  KK 271
            +K
Sbjct: 777  RK 778


>gb|PNX79929.1| ribonuclease H, partial [Trifolium pratense]
          Length = 709

 Score =  201 bits (510), Expect = 6e-55
 Identities = 96/256 (37%), Positives = 145/256 (56%), Gaps = 4/256 (1%)
 Frame = -3

Query: 1035 GKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLG 856
            G+FT++SAY L+  +  +    +WK +W++   ER+R F+W L +GRL TN    R   G
Sbjct: 357  GRFTVSSAYKLVCGYHALEPDAMWKHIWNLEVPERIRCFIWRLKYGRLTTNKTCNRWGYG 416

Query: 855  TPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGTDTQL- 679
            TP C HC   EE+ +  LRDCPLA   W ++V  + R  F   + H W   NM + T L 
Sbjct: 417  TPYCDHCVGEEETIIHALRDCPLAHNTWQHLVPIQNRLDFFTCNYHVWFQRNMESVTSLE 476

Query: 678  ---EWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKIKT 508
               EW  IWA+ C  +W+WRNK   + ++V P        N  ++Y+   +         
Sbjct: 477  GGIEWRVIWASTCFHLWLWRNKEKFDTEYVRPCLSSRYIHNYVENYYKAHRSIALIMEHP 536

Query: 507  KVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAWMCGYSRSLGFCNAYVS 328
            +V   + W  P+  W  +N+DGA   + GIAGCGG++RD  GAW+ G+++++G  NA+++
Sbjct: 537  RVVINVRWEAPLVSWNSINTDGA--VQHGIAGCGGVLRDHRGAWIGGFAKNIGTTNAFIA 594

Query: 327  ELWGVYEGIILAMTKG 280
            ELWG YEG+ LA  +G
Sbjct: 595  ELWGAYEGLCLARRRG 610


>gb|PNY10278.1| ribonuclease H [Trifolium pratense]
          Length = 374

 Score =  193 bits (490), Expect = 8e-55
 Identities = 97/224 (43%), Positives = 127/224 (56%), Gaps = 4/224 (1%)
 Frame = -3

Query: 1035 GKFTIASAYNLLNNFTGMPVTDIWKRVWSIAAKERVRQFVWLLCHGRLLTNVRKARMNLG 856
            G FT+ASAYN+L +         W  VW I A ERVR FVWLL HGR+LT+ R ++MNLG
Sbjct: 152  GNFTVASAYNILADINCQHNNTTWNIVWKIQACERVRAFVWLLKHGRMLTHYRMSKMNLG 211

Query: 855  TPRCHHCRTIEESTLRVLRDCPLALTVWLNIVHPKLRTKFLESDLHDWISDNMGTDTQ-- 682
             P C  C    E+ L VLRDC  ++ VWLNIVH   R  F  +D   WI+ N+  D Q  
Sbjct: 212  LPFCTFCEDEIETELHVLRDCSKSMQVWLNIVHDSSREVFFNADFQQWINMNLHGDIQGV 271

Query: 681  --LEWAAIWANACHLIWMWRNKIIHNEDFVMPWKPWSLPINETKDYHLLEKDQINKKIKT 508
                W + WA ACH +W WRNK  H + F  P++P  +      +Y    +   N  +  
Sbjct: 272  DVNNWQSYWAIACHALWTWRNKEKHYDCFNRPYRPHLVIKQYMTEYEKSNQVDHNVVVLL 331

Query: 507  KVTKMIGWVPPIEGWLKLNSDGASNKECGIAGCGGLVRDQNGAW 376
            +V + IGW PP EGW+ +NSDGA  KE   +GCGG++R  +  W
Sbjct: 332  RVMRQIGWCPPSEGWIIINSDGA-KKENHYSGCGGILRGISAEW 374