BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00023304
         (1519 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_013455287.1| replication factor-A carboxy-terminal domain...   420   e-140
ref|XP_003605675.1| replication factor-A carboxy-terminal domain...   420   e-139
ref|XP_003605674.2| replication factor-A carboxy-terminal domain...   420   e-138
gb|PNY01563.1| replication factor A protein [Trifolium pratense]      415   e-137
dbj|GAU46750.1| hypothetical protein TSUD_402760 [Trifolium subt...   420   e-137
gb|PNY13096.1| replication factor A protein [Trifolium pratense]      415   e-136
ref|XP_003600272.2| replication factor-A carboxy-terminal domain...   418   e-136
gb|PNX95898.1| replication factor A protein [Trifolium pratense]      409   e-134
ref|XP_003593181.2| replication factor-A carboxy-terminal domain...   400   e-131
ref|XP_013446466.1| replication factor-A carboxy-terminal domain...   400   e-131
gb|PNX92168.1| replication factor A protein [Trifolium pratense]      394   e-127
dbj|GAU20673.1| hypothetical protein TSUD_230870 [Trifolium subt...   378   e-122
gb|PNY05687.1| replication factor A protein [Trifolium pratense]      378   e-121
gb|PNX71437.1| replication factor A protein, partial [Trifolium ...   364   e-118
dbj|GAU46337.1| hypothetical protein TSUD_401960 [Trifolium subt...   364   e-116
gb|PNY08630.1| replication factor A protein [Trifolium pratense]      350   e-112
dbj|GAU46627.1| hypothetical protein TSUD_284750 [Trifolium subt...   338   e-107
dbj|GAU47630.1| hypothetical protein TSUD_137600 [Trifolium subt...   322   e-102
gb|PNX95543.1| replication factor-A carboxy-terminal domain prot...   315   3e-99
dbj|GAU21859.1| hypothetical protein TSUD_33550 [Trifolium subte...   298   2e-93

>ref|XP_013455287.1| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
 gb|KEH29318.1| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
          Length = 417

 Score =  420 bits (1080), Expect = e-140
 Identities = 205/337 (60%), Positives = 256/337 (75%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVIA+EA G+K+QCTLFG+YVD+LNTF+A+G+  N VV IQLAKVK+FQ+ IHIQN +
Sbjct: 19   KLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCL 78

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             CT++ FNP CV+G   +N + EN D+PSPL  T L  EP IDP  +FL+NTPRTTIQGL
Sbjct: 79   NCTRLKFNPVCVEGTAFKNRMIENDDTPSPL--TQLAVEPSIDPLQDFLFNTPRTTIQGL 136

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            KD  +E ++VVLGT+ QI+N ENW+YTAC+C KSVYP   M+FCEKCN+H++KV+PRY I
Sbjct: 137  KDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSI 196

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKV 708
            KVRV+D+SDCAT V+FDRDA++LFNKSCA +L+TH     +GVLP E+ ALV+ T LFKV
Sbjct: 197  KVRVVDDSDCATFVLFDRDATMLFNKSCADILETH--RADEGVLPTEIAALVNCTYLFKV 254

Query: 707  ETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 528
            E     SPRFEQSFRV+K+CT  VII QF  KW KEEA F+KN N+  SLS+L+ KGKD 
Sbjct: 255  EFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKDV 314

Query: 527  VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
            + V  + V S  L SLS    K K  + EGT   IS+
Sbjct: 315  LVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGISE 351


>ref|XP_003605675.1| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
 gb|AES87872.1| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
          Length = 480

 Score =  420 bits (1080), Expect = e-139
 Identities = 205/337 (60%), Positives = 256/337 (75%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVIA+EA G+K+QCTLFG+YVD+LNTF+A+G+  N VV IQLAKVK+FQ+ IHIQN +
Sbjct: 82   KLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCL 141

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             CT++ FNP CV+G   +N + EN D+PSPL  T L  EP IDP  +FL+NTPRTTIQGL
Sbjct: 142  NCTRLKFNPVCVEGTAFKNRMIENDDTPSPL--TQLAVEPSIDPLQDFLFNTPRTTIQGL 199

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            KD  +E ++VVLGT+ QI+N ENW+YTAC+C KSVYP   M+FCEKCN+H++KV+PRY I
Sbjct: 200  KDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSI 259

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKV 708
            KVRV+D+SDCAT V+FDRDA++LFNKSCA +L+TH     +GVLP E+ ALV+ T LFKV
Sbjct: 260  KVRVVDDSDCATFVLFDRDATMLFNKSCADILETH--RADEGVLPTEIAALVNCTYLFKV 317

Query: 707  ETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 528
            E     SPRFEQSFRV+K+CT  VII QF  KW KEEA F+KN N+  SLS+L+ KGKD 
Sbjct: 318  EFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKDV 377

Query: 527  VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
            + V  + V S  L SLS    K K  + EGT   IS+
Sbjct: 378  LVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGISE 414


>ref|XP_003605674.2| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
 gb|AES87871.2| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
          Length = 560

 Score =  420 bits (1080), Expect = e-138
 Identities = 205/337 (60%), Positives = 256/337 (75%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVIA+EA G+K+QCTLFG+YVD+LNTF+A+G+  N VV IQLAKVK+FQ+ IHIQN +
Sbjct: 162  KLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCL 221

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             CT++ FNP CV+G   +N + EN D+PSPL  T L  EP IDP  +FL+NTPRTTIQGL
Sbjct: 222  NCTRLKFNPVCVEGTAFKNRMIENDDTPSPL--TQLAVEPSIDPLQDFLFNTPRTTIQGL 279

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            KD  +E ++VVLGT+ QI+N ENW+YTAC+C KSVYP   M+FCEKCN+H++KV+PRY I
Sbjct: 280  KDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSI 339

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKV 708
            KVRV+D+SDCAT V+FDRDA++LFNKSCA +L+TH     +GVLP E+ ALV+ T LFKV
Sbjct: 340  KVRVVDDSDCATFVLFDRDATMLFNKSCADILETH--RADEGVLPTEIAALVNCTYLFKV 397

Query: 707  ETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 528
            E     SPRFEQSFRV+K+CT  VII QF  KW KEEA F+KN N+  SLS+L+ KGKD 
Sbjct: 398  EFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKDV 457

Query: 527  VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
            + V  + V S  L SLS    K K  + EGT   IS+
Sbjct: 458  LVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGISE 494


>gb|PNY01563.1| replication factor A protein [Trifolium pratense]
          Length = 526

 Score =  415 bits (1067), Expect = e-137
 Identities = 204/340 (60%), Positives = 254/340 (74%), Gaps = 9/340 (2%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQ-------EK 1269
            KLNVIALEA GHK+QCTLFG YVD+LNTF+ASGD  NAVVI+QLAK K FQ       +K
Sbjct: 83   KLNVIALEAEGHKLQCTLFGPYVDELNTFIASGDKDNAVVIVQLAKAKTFQVIDMAFVDK 142

Query: 1268 IHIQNSMGCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTP 1089
            IHIQN M CT+V FNP C + V++R SL E+ +SPSP+ +T ++ EP + P DEFL+NTP
Sbjct: 143  IHIQNCMNCTQVFFNPDCDESVVLRESLPESLESPSPMTLTQIHVEPTVSPLDEFLFNTP 202

Query: 1088 RTTIQGLKDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMK 909
            R T+Q LKD T ES+ VV  T+ ++LN + +WYTACVC KSV PDS M+FCEKCNKH+ +
Sbjct: 203  RMTLQALKDATTESLNVVCATVKRVLNPDCFWYTACVCNKSVIPDSNMFFCEKCNKHVKR 262

Query: 908  VYPRYCIKVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVD 729
            V+PRYC+KVRV+D +D A  V+FD+DAS LFN SCA ML+   R GG G +PP++  LVD
Sbjct: 263  VFPRYCVKVRVMDQTDHAPFVMFDKDASSLFNMSCADMLEHTRRNGGVGSVPPQISGLVD 322

Query: 728  TTILFKVETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSAL 549
             T LFKVET P  +PRFEQ+FRVRKICT   IIKQF  KWDKEEA   K NN+  SLS L
Sbjct: 323  KTWLFKVETKPSTNPRFEQTFRVRKICTDYAIIKQFQDKWDKEEAAISKINNEVGSLSTL 382

Query: 548  VGKGKDKVGVSDTHVLSQGLESLSG--NEGKGKEKLAEGT 435
            V KGKD +  S T++LS+ L+SL+G  ++ KGKE + + T
Sbjct: 383  VEKGKDVLVCSSTNILSEDLQSLTGSSSKDKGKEIVCDST 422


>dbj|GAU46750.1| hypothetical protein TSUD_402760 [Trifolium subterraneum]
          Length = 676

 Score =  420 bits (1080), Expect = e-137
 Identities = 203/346 (58%), Positives = 258/346 (74%), Gaps = 9/346 (2%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQ-------EK 1269
            KLNVIALEA GHK+QCTLFG YVD+LN F+ASGD  NA+VI+QLAK K FQ       +K
Sbjct: 137  KLNVIALEAEGHKLQCTLFGPYVDELNAFIASGDKDNAIVIVQLAKAKTFQVIDMEFVDK 196

Query: 1268 IHIQNSMGCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTP 1089
            IHIQN M CT++ FNP C + V++R SL E+ +SPSP+ +T ++ EP + P DEFL+NTP
Sbjct: 197  IHIQNCMNCTRLFFNPNCQESVVLRESLPESLESPSPMTLTQISVEPAVSPVDEFLFNTP 256

Query: 1088 RTTIQGLKDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMK 909
            R T+QG+KD T ES+ VV  T+ +ILN + +WYTACVC KSV PDS M++CEKCNKH+MK
Sbjct: 257  RMTLQGIKDATTESLNVVCATVKRILNPDCFWYTACVCNKSVIPDSNMFYCEKCNKHVMK 316

Query: 908  VYPRYCIKVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVD 729
            V+PRYC+KVRV+D++D A+ VIFD+DAS LFN SCA ML+     GG G +PP++  LVD
Sbjct: 317  VFPRYCLKVRVMDHTDHASFVIFDKDASSLFNMSCADMLEHTQTIGGVGSVPPQIARLVD 376

Query: 728  TTILFKVETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSAL 549
             T LFKVET P  +PRFEQ+FR+RKICT   IIKQF  KWD+EEA F K NN+  SLS L
Sbjct: 377  NTWLFKVETKPSTNPRFEQTFRIRKICTDHAIIKQFKDKWDREEAAFSKINNEVGSLSTL 436

Query: 548  VGKGKDKVGVSDTHVLSQGLESLSGNEG--KGKEKLAEGTASCISQ 417
            + KGKD +  S  ++LS+ L+SL+G+    KGKE + EGT   + Q
Sbjct: 437  LEKGKDILVCSSANILSEDLQSLTGSSSKEKGKEIVCEGTPVALKQ 482


>gb|PNY13096.1| replication factor A protein [Trifolium pratense]
          Length = 608

 Score =  415 bits (1067), Expect = e-136
 Identities = 204/340 (60%), Positives = 254/340 (74%), Gaps = 9/340 (2%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQ-------EK 1269
            KLNVIALEA GHK+QCTLFG YVD+LNTF+ASGD  NAVVI+QLAK K FQ       +K
Sbjct: 83   KLNVIALEAEGHKLQCTLFGPYVDELNTFIASGDKDNAVVIVQLAKAKTFQVIDMAFVDK 142

Query: 1268 IHIQNSMGCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTP 1089
            IHIQN M CT+V FNP C + V++R SL E+ +SPSP+ +T ++ EP + P DEFL+NTP
Sbjct: 143  IHIQNCMNCTQVFFNPDCDESVVLRESLPESLESPSPMTLTQIHVEPTVSPLDEFLFNTP 202

Query: 1088 RTTIQGLKDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMK 909
            R T+Q LKD T ES+ VV  T+ ++LN + +WYTACVC KSV PDS M+FCEKCNKH+ +
Sbjct: 203  RMTLQALKDATTESLNVVCATVKRVLNPDCFWYTACVCNKSVIPDSNMFFCEKCNKHVKR 262

Query: 908  VYPRYCIKVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVD 729
            V+PRYC+KVRV+D +D A  V+FD+DAS LFN SCA ML+   R GG G +PP++  LVD
Sbjct: 263  VFPRYCVKVRVMDQTDHAPFVMFDKDASSLFNMSCADMLEHTRRNGGVGSVPPQISGLVD 322

Query: 728  TTILFKVETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSAL 549
             T LFKVET P  +PRFEQ+FRVRKICT   IIKQF  KWDKEEA   K NN+  SLS L
Sbjct: 323  KTWLFKVETKPSTNPRFEQTFRVRKICTDYAIIKQFQDKWDKEEAAISKINNEVGSLSTL 382

Query: 548  VGKGKDKVGVSDTHVLSQGLESLSG--NEGKGKEKLAEGT 435
            V KGKD +  S T++LS+ L+SL+G  ++ KGKE + + T
Sbjct: 383  VEKGKDVLVCSSTNILSEDLQSLTGSSSKDKGKEIVCDST 422


>ref|XP_003600272.2| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
 gb|AES70523.2| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
          Length = 719

 Score =  418 bits (1075), Expect = e-136
 Identities = 204/337 (60%), Positives = 255/337 (75%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVIA+EA G+K+QCTLFG+YVD+LNTF+A+G+  N VV IQLAKVK+FQ+ IHIQN +
Sbjct: 321  KLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCL 380

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             CT++ FNP C +G   +N + EN D+PSPL  T L  EP IDP  +FL+NTPRTTIQGL
Sbjct: 381  NCTRLKFNPVCAEGTAFKNRMIENDDTPSPL--TQLAVEPSIDPLQDFLFNTPRTTIQGL 438

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            KD  +E ++VVLGT+ QI+N ENW+YTAC+C KSVYP   M+FCEKCN+H++KV+PRY I
Sbjct: 439  KDSQQEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSI 498

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKV 708
            KVRV+D+SDCAT V+FDRDA++LFNKSCA +L+TH     +GVLP E+ ALV+ T LFKV
Sbjct: 499  KVRVVDDSDCATFVLFDRDATMLFNKSCADILETH--RADEGVLPTEIGALVNCTYLFKV 556

Query: 707  ETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 528
            E     SPRFEQSFRV+K+CT  VII QF  KW KEEA F+KN N+  SLS+L+ KGKD 
Sbjct: 557  EFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKDM 616

Query: 527  VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
            + V  + V S  L SLS    K K  + EGT   IS+
Sbjct: 617  LVVGSSSVQSHDLGSLSETIDKDKNIIVEGTPIGISE 653



 Score = 75.5 bits (184), Expect = 1e-10
 Identities = 38/55 (69%), Positives = 45/55 (81%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIH 1263
            KLNVIA+EA G+K+QCTLFG+YVD LNTF+A+G+  N VV IQLAKVK    KIH
Sbjct: 162  KLNVIAMEADGYKLQCTLFGTYVDKLNTFLATGETANVVVSIQLAKVK--GSKIH 214


>gb|PNX95898.1| replication factor A protein [Trifolium pratense]
          Length = 600

 Score =  409 bits (1052), Expect = e-134
 Identities = 197/340 (57%), Positives = 255/340 (75%), Gaps = 3/340 (0%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVI LEA GHK+QCTLFG YVD+LNTF+++GD+ N VVI+QLAK K FQ+KIHIQN M
Sbjct: 132  KLNVIELEADGHKLQCTLFGPYVDELNTFLSAGDVDNVVVIVQLAKAKTFQDKIHIQNCM 191

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             C+ V+FNP+C + V +R SL ++ ++PSPL +T L+ E  + P DEFLYNTPR T+QGL
Sbjct: 192  NCSVVIFNPSCEESVNLRASLADSVETPSPLTLTQLSVESSVRPLDEFLYNTPRITLQGL 251

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            KD T ESV VV+ T+ +ILN E++WYTAC C K+V PDS  +FCEKC+KH+ KV+PR+CI
Sbjct: 252  KDTTNESVNVVVATVKRILNPESYWYTACSCGKAVIPDSGRFFCEKCDKHVPKVFPRFCI 311

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTG---GDGVLPPELMALVDTTIL 717
            KVRV+D++D ATLVIFD+DAS++ N SCA ++Q    TG   G G LPP++  +V+ T L
Sbjct: 312  KVRVMDHTDSATLVIFDKDASLILNMSCADLIQGIQGTGAGAGGGELPPQIEGMVEKTWL 371

Query: 716  FKVETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKG 537
            FKVE  P  +PRF+ S+RVRKICT   IIKQF  KWD EEA+FLKN N+  SLS L+ KG
Sbjct: 372  FKVEAKPSHNPRFDTSYRVRKICTDNAIIKQFKDKWDNEEAVFLKNKNEGGSLSTLLDKG 431

Query: 536  KDKVGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
            K+      ++VLS+  ++ SGN  KGKE + EGT   +SQ
Sbjct: 432  KNVYVGGSSNVLSEDHDNFSGNSFKGKEIILEGTPLGVSQ 471


>ref|XP_003593181.2| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
 gb|AES63432.2| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
          Length = 555

 Score =  400 bits (1029), Expect = e-131
 Identities = 194/337 (57%), Positives = 248/337 (73%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVI LEA G KIQCTLFGSYVDDLN+F+ASGD+ NA+VIIQLAK K FQ+KIH+QN +
Sbjct: 164  KLNVIELEAGGFKIQCTLFGSYVDDLNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCI 223

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
            GCTKV+F PTC   V MRN L+E  D+PSPL +T L  E K+DP +EFLY TPR T+QGL
Sbjct: 224  GCTKVIFKPTCDAAVSMRNRLSETVDTPSPLGLTQLQPEAKLDPREEFLYGTPRNTMQGL 283

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            KD T   V+VVLGTI +I+N EN+WYTAC+C+K+V PDS+M++CEKC++H+ KV+ RYC+
Sbjct: 284  KDATTNEVYVVLGTIKRIVNRENFWYTACICSKAVIPDSQMFYCEKCDRHVKKVFSRYCL 343

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKV 708
            +VR ID++DCATLVIFD++A+ LFNKSC  ML  H     +G LPPE+  ++  T LFKV
Sbjct: 344  RVRAIDHTDCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKV 403

Query: 707  ETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 528
            ET    +PRFEQSFRVRKIC    +I +F +KW +EEA F KN  + +SLS L+ KGK  
Sbjct: 404  ETKVDQNPRFEQSFRVRKICAMPDVINEFKKKWGEEEAAFFKNAMEASSLSVLLDKGKAP 463

Query: 527  VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
            +    + VL+Q   SL+    K KE L    +  ++Q
Sbjct: 464  MIAGSSDVLNQDDFSLTEPVEKCKEMLLGEGSGIVTQ 500


>ref|XP_013446466.1| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
 gb|KEH20493.1| replication factor-A carboxy-terminal domain protein [Medicago
            truncatula]
          Length = 555

 Score =  400 bits (1029), Expect = e-131
 Identities = 194/337 (57%), Positives = 248/337 (73%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVI LEA G KIQCTLFGSYVDDLN+F+ASGD+ NA+VIIQLAK K FQ+KIH+QN +
Sbjct: 164  KLNVIELEAGGFKIQCTLFGSYVDDLNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCI 223

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
            GCTKV+F PTC   V MRN L+E  D+PSPL +T L  E K+DP +EFLY TPR T+QGL
Sbjct: 224  GCTKVIFKPTCDAAVSMRNRLSETVDTPSPLGLTQLQPEAKLDPREEFLYGTPRNTMQGL 283

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            KD T   V+VVLGTI +I+N EN+WYTAC+C+K+V PDS+M++CEKC++H+ KV+ RYC+
Sbjct: 284  KDATTNEVYVVLGTIKRIVNRENFWYTACICSKAVIPDSQMFYCEKCDRHVKKVFSRYCL 343

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKV 708
            +VR ID++DCATLVIFD++A+ LFNKSC  ML  H     +G LPPE+  ++  T LFKV
Sbjct: 344  RVRAIDHTDCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKV 403

Query: 707  ETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 528
            ET    +PRFEQSFRVRKIC    +I +F +KW +EEA F KN  + +SLS L+ KGK  
Sbjct: 404  ETKVDQNPRFEQSFRVRKICAMPDVINEFKKKWGEEEAAFFKNAMEASSLSVLLDKGKAP 463

Query: 527  VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
            +    + VL+Q   SL+    K KE L    +  ++Q
Sbjct: 464  MIAGSSDVLNQDDFSLTEPVEKCKEMLLGEGSGIVTQ 500


>gb|PNX92168.1| replication factor A protein [Trifolium pratense]
          Length = 661

 Score =  394 bits (1013), Expect = e-127
 Identities = 191/339 (56%), Positives = 251/339 (74%), Gaps = 2/339 (0%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVI+LEA GHK+QCTLFG YVD+LNTF+ +GDL NAVVI+QLAK K FQ+KIHIQN M
Sbjct: 169  KLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNAVVIVQLAKAKTFQDKIHIQNCM 228

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             C+ ++FNP C +    R S++++ ++PSPL  T L+ EP + P DEFLYNTPR T+Q L
Sbjct: 229  NCSVLLFNPNCEESQTFRASISDSDENPSPLTFTQLSNEPTVSPLDEFLYNTPRATLQDL 288

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            +D T+ES  VV  T+ +ILN +++WYT+C C K V PDS ++FCEKCN+H+ KV PR+C+
Sbjct: 289  RDATKESSHVVCATVKRILNPDSYWYTSCFCGKGVIPDSNLWFCEKCNRHVPKVVPRFCV 348

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDR-TGGDGVLPPEL-MALVDTTILF 714
            K+RVID++D ATLV+FD++AS +FN SCA MLQ  D    G+G++PP +  +LV+ T LF
Sbjct: 349  KLRVIDDTDSATLVVFDKEASGIFNMSCADMLQLGDADNDGEGIVPPPIDDSLVNQTWLF 408

Query: 713  KVETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGK 534
            KVET P  +PRFEQSFRVRKICT E IIKQF  KWD E+A+  K  N+  SLS L+ KGK
Sbjct: 409  KVETKPSQNPRFEQSFRVRKICTDEGIIKQFKDKWDSEDALRTKKRNEGGSLSTLLDKGK 468

Query: 533  DKVGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
            D      ++VLSQ  ++ SG+  KGK  + +GT   +SQ
Sbjct: 469  DVYVGGTSNVLSQECQNFSGDSDKGKGLIVDGTPVEVSQ 507


>dbj|GAU20673.1| hypothetical protein TSUD_230870 [Trifolium subterraneum]
          Length = 531

 Score =  378 bits (970), Expect = e-122
 Identities = 176/301 (58%), Positives = 230/301 (76%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNV+ LEA GHK+QCTLFG YVD+LNTF+ +GD+ NAVVI+Q AK K FQ+KIHIQN M
Sbjct: 120  KLNVMELEADGHKLQCTLFGQYVDELNTFIGAGDVNNAVVIVQFAKAKTFQDKIHIQNCM 179

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             C+ ++FNPTC + V +R SL++  +  SP+ +T  N EP++ P DEF+YNTPR T+QGL
Sbjct: 180  NCSVLIFNPTCPESVNLRASLSDAVEILSPMPLTQFNVEPRVQPIDEFMYNTPRMTLQGL 239

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            K+ T ES+ VVL T+ +ILN ++++YTAC+C+K+V PDS+M++CEKCNKH+ KV PR+CI
Sbjct: 240  KEATSESLNVVLATVKRILNPDSYYYTACMCSKAVIPDSRMFYCEKCNKHVQKVVPRFCI 299

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKV 708
            KVRVID++D ATLVIFD++AS++ N SCA M+Q  D   G GV+PP L  LV+ T LFKV
Sbjct: 300  KVRVIDHTDSATLVIFDKEASLILNMSCADMIQGADTVVGVGVVPPLLEGLVEKTWLFKV 359

Query: 707  ETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 528
            E  P  +P+FE S+RVRKICT + IIKQF  KWD E+A F KN N  + LS    KGKD 
Sbjct: 360  EAKPSHNPKFEPSYRVRKICTDDAIIKQFKDKWDAEDAKFRKNRNDLSCLSGQCDKGKDL 419

Query: 527  V 525
            +
Sbjct: 420  I 420


>gb|PNY05687.1| replication factor A protein [Trifolium pratense]
          Length = 651

 Score =  378 bits (971), Expect = e-121
 Identities = 183/338 (54%), Positives = 241/338 (71%), Gaps = 1/338 (0%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVI+LEA GHK+QCTLFG YVD+LNTF+ +GDL N VVI+ LAK K FQ+KIHIQN M
Sbjct: 169  KLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNHVVIVHLAKAKTFQDKIHIQNCM 228

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             C+ ++FNP C +  + R SL ++ ++ SPL  T L+ E  + P DEFLYNTPR T+Q L
Sbjct: 229  NCSVLIFNPNCEESKIFRASLNDSDENHSPLTFTQLSNESAVTPLDEFLYNTPRATLQDL 288

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            KD T+ S  VV  T+ + LN + +WYTAC C K+V  DS+++FCEKCN+H+ KV PRYC+
Sbjct: 289  KDATKVSSHVVAATVKRTLNPDRYWYTACFCGKAVIQDSRLWFCEKCNRHVPKVVPRYCV 348

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPEL-MALVDTTILFK 711
            K+RV+D++D AT V+FD++AS +FN SCA MLQ  D   G+ ++PPE+   LV+ T LF 
Sbjct: 349  KLRVMDDTDSATFVVFDKEASAIFNMSCADMLQLGDVADGEQIVPPEIDDMLVNHTWLFM 408

Query: 710  VETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKD 531
            VE  P  +PRFEQSFRVRKICT EVIIKQF  KWD E+A+  K  N+  SLS L+ KGKD
Sbjct: 409  VEAKPSQNPRFEQSFRVRKICTDEVIIKQFKDKWDNEDAVCNKKRNEGGSLSTLLDKGKD 468

Query: 530  KVGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
                  ++ LS+  ++ SG+  KGK  + +GT   +SQ
Sbjct: 469  VYVGGTSNFLSEECQNFSGDSDKGKGLIVDGTPLEVSQ 506


>gb|PNX71437.1| replication factor A protein, partial [Trifolium pratense]
          Length = 465

 Score =  364 bits (935), Expect = e-118
 Identities = 180/313 (57%), Positives = 232/313 (74%), Gaps = 2/313 (0%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVI+LEA GHK+QCTLFG YVD+LNTF+ +GDL NAVVI+QLAK K FQ+KIHIQN M
Sbjct: 160  KLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNAVVIVQLAKAKTFQDKIHIQNCM 219

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             C+ ++FNP C +    R S + + ++PSPL  T L+ EP + P DEFLYNTPR T+Q L
Sbjct: 220  NCSVLLFNPNCEESQSFRASQSGSDENPSPLTFTQLSNEPTVTPLDEFLYNTPRATLQDL 279

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            KD T+ES  VV  T+ +ILN +++WYT+C C K V PDS+++FCEKCN+H+ KV PR+C+
Sbjct: 280  KDATKESSHVVSATVKRILNPDSYWYTSCFCGKGVIPDSRLWFCEKCNRHVPKVVPRFCV 339

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDR-TGGDGVLPPEL-MALVDTTILF 714
            K+RV+D++D ATLV+FD++AS +FN SCA MLQ  D    G+G++PP +  +LV+ T LF
Sbjct: 340  KLRVMDHTDSATLVVFDKEASGIFNMSCADMLQLGDADNDGEGIVPPPIDDSLVNQTWLF 399

Query: 713  KVETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGK 534
            KVET P  +PRFEQSFRVRKICT E IIKQF  KWD E+A       +  SLS L+ KGK
Sbjct: 400  KVETKPSQNPRFEQSFRVRKICTDEGIIKQFKDKWDSEDA-------EGGSLSTLLDKGK 452

Query: 533  DKVGVSDTHVLSQ 495
            D      ++VLSQ
Sbjct: 453  DVYVGGTSNVLSQ 465


>dbj|GAU46337.1| hypothetical protein TSUD_401960 [Trifolium subterraneum]
          Length = 593

 Score =  364 bits (934), Expect = e-116
 Identities = 179/339 (52%), Positives = 234/339 (69%), Gaps = 2/339 (0%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVI LEA+GHK+QCTLFG YVD+LNTF+A+GD  NAVVI+QLAK K FQ+K+HIQN M
Sbjct: 120  KLNVIELEAAGHKLQCTLFGPYVDELNTFIAAGDYSNAVVIVQLAKAKTFQDKLHIQNCM 179

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             CT++ FNP C +  ++R SL  + +SPSP+ +T + AEP + P +EFL+NTPRTT+QGL
Sbjct: 180  NCTRLFFNPNCEESRVLRESLPVSIESPSPITLTQIQAEPAVRPVEEFLFNTPRTTLQGL 239

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            KD T ES+ VV  T+ ++LN + WWYTACVC KSV PDS M++CEKCNKH+ KV+PRYC+
Sbjct: 240  KDATTESIHVVCVTVKRVLNPDCWWYTACVCNKSVIPDSNMFYCEKCNKHVSKVFPRYCL 299

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKV 708
            K+RV+D +D AT VIFD+DAS LFN SCA M +++ R GG GV+PP++  L D   LFKV
Sbjct: 300  KIRVMDQTDHATFVIFDKDASSLFNMSCADMFESNQRLGGVGVVPPQIGMLADKNWLFKV 359

Query: 707  ETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 528
            ET P  +PRFEQ+FR                              +  SLS L+ KGKD 
Sbjct: 360  ETKPTSNPRFEQTFR------------------------------EAGSLSTLLEKGKDV 389

Query: 527  VGVSDTHVLSQGLESLSGNEG--KGKEKLAEGTASCISQ 417
            +  S T++LS+ L +L+G+    KGKE + + T    SQ
Sbjct: 390  LAASSTNILSEDLFTLTGSSSKEKGKEIVVDCTPVEFSQ 428


>gb|PNY08630.1| replication factor A protein [Trifolium pratense]
          Length = 473

 Score =  350 bits (898), Expect = e-112
 Identities = 171/319 (53%), Positives = 229/319 (71%), Gaps = 8/319 (2%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQ-------EK 1269
            KLNVI+LEA GHK+QCTLFG YVD+LNTF+ +GDL NAVVI+QLAK K+FQ       EK
Sbjct: 160  KLNVISLEADGHKLQCTLFGPYVDELNTFVGAGDLNNAVVIVQLAKAKMFQVIDWEIVEK 219

Query: 1268 IHIQNSMGCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTP 1089
            IHIQN + C+ ++FNP+C + V  R SL  + ++PSPL  T L  E  + P DEF+YNTP
Sbjct: 220  IHIQNCLNCSVLIFNPSCEESVTFRASLNGSEETPSPLTFTQLTVESSVQPLDEFVYNTP 279

Query: 1088 RTTIQGLKDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMK 909
            R T+QGL+D T +S +VV  T+ +ILN +++WYT+C+C K+   DS+M++CEKCN+H+ K
Sbjct: 280  RITLQGLRDVTSDSTYVVAATVKRILNPDSYWYTSCLCGKAAISDSRMWYCEKCNRHVPK 339

Query: 908  VYPRYCIKVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPEL-MALV 732
            V PR+C+KVRV+D++D A        A+ LFN SCA M+Q  +   G+ ++PP++   LV
Sbjct: 340  VVPRFCVKVRVMDDTDSAIF------ATSLFNMSCADMIQIGETAVGERIVPPQIDDTLV 393

Query: 731  DTTILFKVETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSA 552
            D T LFKVE  P  +PRFEQSFRVRKICT+E IIKQF +KWD E+A+ LK  N+  SLS 
Sbjct: 394  DQTWLFKVEAKPSHNPRFEQSFRVRKICTNESIIKQFKEKWDNEDALNLKIANEDGSLST 453

Query: 551  LVGKGKDKVGVSDTHVLSQ 495
            L+ K KD      ++VLS+
Sbjct: 454  LLEKAKDVYVGGSSNVLSE 472


>dbj|GAU46627.1| hypothetical protein TSUD_284750 [Trifolium subterraneum]
          Length = 526

 Score =  338 bits (866), Expect = e-107
 Identities = 173/337 (51%), Positives = 224/337 (66%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            KLNVI LEA GHK+QCTL G YVD+LNTF+ +GD+ N VVI+Q AK K FQ+KIHIQN M
Sbjct: 121  KLNVIELEAHGHKLQCTLLGQYVDELNTFIGAGDVNNTVVIVQFAKAKTFQDKIHIQNCM 180

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             C+ ++FNPTC + V +R SL++  ++ SP+ +T  N E ++ P DEF+YNTPR+T+QG+
Sbjct: 181  NCSVLIFNPTCPESVNLRASLSDAVENLSPMPLTQFNGEARVQPIDEFMYNTPRSTLQGI 240

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            K+                             T +V PDS+M++CEKCNKH+ KV PR+CI
Sbjct: 241  KE----------------------------ATSAVIPDSRMFYCEKCNKHVQKVVPRFCI 272

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKV 708
            KVRVID++D  TLVIFD++AS++ N SCA M+Q  D   G   +PP L  LVD T  FKV
Sbjct: 273  KVRVIDHTDSVTLVIFDKEASLILNMSCADMIQGADPAFG---VPPLLEGLVDKTWFFKV 329

Query: 707  ETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 528
            E  P  +P+FEQSFRVRKICT + IIKQF  KWD E+A F KN N+  SLS L+ KGKD 
Sbjct: 330  EAKPSHNPKFEQSFRVRKICTDDAIIKQFKDKWDGEDAKFRKNRNEGGSLSTLLNKGKDI 389

Query: 527  VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
            +    ++VL +    LSG   KGKE + EGT   +SQ
Sbjct: 390  LVGGSSNVLCEIF--LSGESHKGKELIIEGTPVGVSQ 424


>dbj|GAU47630.1| hypothetical protein TSUD_137600 [Trifolium subterraneum]
          Length = 416

 Score =  322 bits (824), Expect = e-102
 Identities = 162/332 (48%), Positives = 221/332 (66%)
 Frame = -3

Query: 1427 KLNVIALEASGHKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSM 1248
            +LNVIALE  G+KIQCTLFGS  DDLN+F+A+ D+ NAVVIIQ AK K FQ+K+H+QN M
Sbjct: 37   RLNVIALEVDGYKIQCTLFGSSCDDLNSFIATRDVYNAVVIIQPAKAKTFQDKVHLQNCM 96

Query: 1247 GCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGL 1068
             CT++VFNP C +   +++   ++ ++PSP+ +T L +E ++ P DEFLYNT     +GL
Sbjct: 97   NCTRLVFNPECEEARALKSRFADDENTPSPMTLTQLTSEVRVSPLDEFLYNTLSQLFKGL 156

Query: 1067 KDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCI 888
            +     S                  YT+C C+K+V P+S+M+FCEKC+KH+M+V PR+CI
Sbjct: 157  RMLPLYS------------------YTSCSCSKAVIPNSQMWFCEKCDKHVMRVTPRFCI 198

Query: 887  KVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKV 708
            KVR +DN+DC T+VIFD DAS+L +KSC A+L +  R   DG LP E+  LV  T+LFKV
Sbjct: 199  KVRALDNTDCGTMVIFDNDASLLIHKSCQAVLDSIPRGVADGFLPNEIAGLVGQTLLFKV 258

Query: 707  ETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDK 528
            ET   F+ +FEQSFRVRKIC    +I QF  KWDKE+A F K+ N+  SLS L+ KGK  
Sbjct: 259  ETKAKFNTKFEQSFRVRKICADANVISQFKMKWDKEDASFSKSKNENASLSTLMDKGKTL 318

Query: 527  VGVSDTHVLSQGLESLSGNEGKGKEKLAEGTA 432
            +    +  +S+ +  LS    K K+K+ E  A
Sbjct: 319  LLEGSSVGISKDIVCLSSPNLKLKDKVGEHVA 350


>gb|PNX95543.1| replication factor-A carboxy-terminal domain protein [Trifolium
            pratense]
          Length = 445

 Score =  315 bits (808), Expect = 3e-99
 Identities = 148/292 (50%), Positives = 206/292 (70%), Gaps = 1/292 (0%)
 Frame = -3

Query: 1289 VKLFQEKIHIQNSMGCTKVVFNPTCVDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSD 1110
            ++L   KIHIQN M C+ ++FNP+C + V +R SL  + ++PSPL  T ++ E  + P D
Sbjct: 9    LRLRSSKIHIQNCMNCSVLIFNPSCDESVALRASLNGSDENPSPLTFTQVSTESSVKPLD 68

Query: 1109 EFLYNTPRTTIQGLKDCTRESVFVVLGTITQILNSENWWYTACVCTKSVYPDSKMYFCEK 930
            EFL+NTPR T+QGLKD T ES  VV  T+ + LN  ++WYT+C+C K+V PDSKM++CEK
Sbjct: 69   EFLHNTPRITLQGLKDATTESSHVVAATVKRTLNPNSYWYTSCLCGKAVVPDSKMWYCEK 128

Query: 929  CNKHIMKVYPRYCIKVRVIDNSDCATLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPP 750
            CN+H+ KV PR+C+KVRV+D++D A  VIFD++AS +FN +CA M+Q  +   G+ ++PP
Sbjct: 129  CNRHVSKVVPRFCVKVRVMDDTDSAIFVIFDKEASSIFNMTCADMIQNGENDVGERIVPP 188

Query: 749  EL-MALVDTTILFKVETNPVFSPRFEQSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNN 573
            ++   L+D T LFKVE  P  +PRFEQSFRVRKICT E IIK+F  KWD E+A++LKN N
Sbjct: 189  QIDETLIDQTWLFKVEAKPFQNPRFEQSFRVRKICTDESIIKEFKDKWDNEDAVYLKNTN 248

Query: 572  QTNSLSALVGKGKDKVGVSDTHVLSQGLESLSGNEGKGKEKLAEGTASCISQ 417
            +  SLS L+ KGKD   V  ++VL +  E+ SG+  KGK  +   T   +SQ
Sbjct: 249  EDGSLSTLLEKGKDDYVVGSSNVLCEEFENFSGDSDKGKGLIVGRTTVDVSQ 300


>dbj|GAU21859.1| hypothetical protein TSUD_33550 [Trifolium subterraneum]
          Length = 388

 Score =  298 bits (764), Expect = 2e-93
 Identities = 153/326 (46%), Positives = 208/326 (63%)
 Frame = -3

Query: 1394 HKIQCTLFGSYVDDLNTFMASGDLQNAVVIIQLAKVKLFQEKIHIQNSMGCTKVVFNPTC 1215
            HK QCTLFG YVD+LNTF+ +GD+ NAVVI+Q AK K FQ+KIHIQN M C+ ++FNPTC
Sbjct: 7    HKPQCTLFGQYVDELNTFIGAGDVNNAVVIVQFAKAKTFQDKIHIQNCMNCSVLIFNPTC 66

Query: 1214 VDGVLMRNSLTENADSPSPLCITPLNAEPKIDPSDEFLYNTPRTTIQGLKDCTRESVFVV 1035
             + V +R SL +  ++ SP+ +T  NAE ++ P DEFLYNTPR T+QGLK+ T ES+ VV
Sbjct: 67   PESVNLRASLIDAVETLSPMPLTQFNAEVRVQPIDEFLYNTPRITLQGLKEATSESLNVV 126

Query: 1034 LGTITQILNSENWWYTACVCTKSVYPDSKMYFCEKCNKHIMKVYPRYCIKVRVIDNSDCA 855
            + T+ +ILN ++++YTAC+C+K+V PDS+M++CEKCNKH+ KV PR+CIKVRVID++D A
Sbjct: 127  VATVKRILNPDSYYYTACMCSKAVIPDSRMFYCEKCNKHVQKVVPRFCIKVRVIDHTDSA 186

Query: 854  TLVIFDRDASVLFNKSCAAMLQTHDRTGGDGVLPPELMALVDTTILFKVETNPVFSPRFE 675
            TLVIFD++AS++FN SCA M+Q  D   G G++ P L  LV+ T LFK            
Sbjct: 187  TLVIFDKEASLIFNMSCADMIQVVDLAVGVGIVSPLLEGLVEKTWLFK------------ 234

Query: 674  QSFRVRKICTSEVIIKQFSQKWDKEEAIFLKNNNQTNSLSALVGKGKDKVGVSDTHVLSQ 495
                                              +  SLS  + KGK+      ++VLS+
Sbjct: 235  ----------------------------------EGGSLSTFLNKGKNIYVGGSSNVLSE 260

Query: 494  GLESLSGNEGKGKEKLAEGTASCISQ 417
               SLSG   KG + + EGT   +SQ
Sbjct: 261  DYGSLSGQSHKGNDLIIEGTHVGVSQ 286