BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00022517
         (696 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN08404.1| Retrotransposon gag protein [Medicago truncatula]...   316   e-107
dbj|GAU18768.1| hypothetical protein TSUD_80570 [Trifolium subte...   322   e-101
gb|PNY03339.1| retrotransposon-related protein, partial [Trifoli...   290   5e-88
dbj|GAU28992.1| hypothetical protein TSUD_391930 [Trifolium subt...   255   2e-74
ref|XP_004488259.1| PREDICTED: uncharacterized protein LOC101500...   237   6e-70
gb|PNX89412.1| hypothetical protein L195_g045531, partial [Trifo...   223   7e-69
gb|PNX90017.1| retrotransposon gag protein, partial [Trifolium p...   218   1e-66
dbj|GAU10118.1| hypothetical protein TSUD_422340 [Trifolium subt...   209   3e-64
dbj|GAU40483.1| hypothetical protein TSUD_286380 [Trifolium subt...   214   4e-64
dbj|GAU17298.1| hypothetical protein TSUD_110150 [Trifolium subt...   223   3e-63
gb|PNX93254.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   222   5e-63
gb|PNX76949.1| retrotransposon-related protein, partial [Trifoli...   218   9e-63
gb|PNX92072.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   221   2e-62
gb|PNY17867.1| hypothetical protein L195_g014621, partial [Trifo...   220   2e-62
gb|PNX73711.1| retrotransposon-related protein, partial [Trifoli...   217   3e-62
dbj|GAU42077.1| hypothetical protein TSUD_326550 [Trifolium subt...   220   3e-62
gb|PNY15768.1| retrotransposon-related protein, partial [Trifoli...   219   8e-62
gb|PNX88494.1| retrotransposon-related protein, partial [Trifoli...   208   1e-61
dbj|GAU42300.1| hypothetical protein TSUD_136860 [Trifolium subt...   216   7e-61
gb|PNX92424.1| retrotransposon-related protein [Trifolium pratense]   216   1e-60

>gb|ABN08404.1| Retrotransposon gag protein [Medicago truncatula]
 gb|ABN08406.1| Retrotransposon gag protein [Medicago truncatula]
          Length = 224

 Score =  316 bits (810), Expect = e-107
 Identities = 164/219 (74%), Positives = 177/219 (80%)
 Frame = -3

Query: 691 MPPKKMETKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKGKNTAESSHNNESV 512
           MPPKKME KVTALEEKIAT+EVSL            KIISLL+ SK KN  ESSH NESV
Sbjct: 1   MPPKKMEAKVTALEEKIATLEVSLHEMQNQNKENQEKIISLLNSSKEKNVGESSHYNESV 60

Query: 511 STKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRPEIKVNLAQ 332
             K+KNSELH +ALDEFRLSVKKVEL MFNGDDPAGWIARAEVYFNVQNT PEIKVNLAQ
Sbjct: 61  GNKKKNSELHDEALDEFRLSVKKVELLMFNGDDPAGWIARAEVYFNVQNTTPEIKVNLAQ 120

Query: 331 LCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQXXXXXXXXX 152
           LCMDG TIHFFKGLLEENE LTWE L  A+LERYGGVSDGNVFEQLS+L+Q         
Sbjct: 121 LCMDGPTIHFFKGLLEENETLTWEDLKDALLERYGGVSDGNVFEQLSALQQEGTIEEYIA 180

Query: 151 XXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITL 35
             ERL +Q+P+LP DQYLGYFVHGLK+ IRGKVRS+IT+
Sbjct: 181 DFERLVAQLPKLPNDQYLGYFVHGLKDKIRGKVRSMITI 219


>dbj|GAU18768.1| hypothetical protein TSUD_80570 [Trifolium subterraneum]
          Length = 895

 Score =  322 bits (825), Expect = e-101
 Identities = 168/230 (73%), Positives = 183/230 (79%)
 Frame = -3

Query: 691 MPPKKMETKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKGKNTAESSHNNESV 512
           MP  KME KVTALEEKI T+EVSL            KIISLL+ +K K   ESSHNNESV
Sbjct: 1   MPRTKMEAKVTALEEKITTLEVSLQEMHNQNKENQEKIISLLNSNKEKQVGESSHNNESV 60

Query: 511 STKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRPEIKVNLAQ 332
            TK+KNSEL+ DA DEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRP+IKVNLAQ
Sbjct: 61  GTKKKNSELNDDAWDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRPKIKVNLAQ 120

Query: 331 LCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQXXXXXXXXX 152
           LCMDG TIHFFKGLLEENE LTWE L  A+LERYGGVSDGNVFEQLS+L+Q         
Sbjct: 121 LCMDGPTIHFFKGLLEENETLTWESLKDALLERYGGVSDGNVFEQLSALQQEGMIEEYIE 180

Query: 151 XXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMNV 2
             ERL +Q+PRLP DQYLGYFVHGLK+ IRGKVRS+I +  +SR KLMNV
Sbjct: 181 DFERLVAQLPRLPDDQYLGYFVHGLKDKIRGKVRSMIAMRPMSRTKLMNV 230


>gb|PNY03339.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1048

 Score =  290 bits (742), Expect = 5e-88
 Identities = 146/193 (75%), Positives = 161/193 (83%)
 Frame = -3

Query: 580 IISLLSLSKGKNTAESSHNNESVSTKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGW 401
           IISLL+ +K KN  ESSH+ ESV TK+KN ELH +A DEFRLSVKKVELPMFNGDDPAGW
Sbjct: 12  IISLLNSNKEKNGEESSHSYESVGTKKKNPELHDEAWDEFRLSVKKVELPMFNGDDPAGW 71

Query: 400 IARAEVYFNVQNTRPEIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGV 221
           IARAEVYFNVQNTRPEIKVNLAQ CMDG TIHFFKGLLEENE LTWE L  A+LERYGGV
Sbjct: 72  IARAEVYFNVQNTRPEIKVNLAQXCMDGPTIHFFKGLLEENETLTWENLKDALLERYGGV 131

Query: 220 SDGNVFEQLSSLRQXXXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLI 41
           SDGNVFEQLS+L+Q           ERL +Q+P+LP DQYLGYFVHGLK+ IRGKVRS+I
Sbjct: 132 SDGNVFEQLSALQQEGTIEEYIEDFERLVAQLPKLPNDQYLGYFVHGLKDKIRGKVRSMI 191

Query: 40  TLGAVSRPKLMNV 2
            +G +SR KLMNV
Sbjct: 192 AMGPMSRAKLMNV 204


>dbj|GAU28992.1| hypothetical protein TSUD_391930 [Trifolium subterraneum]
          Length = 1407

 Score =  255 bits (651), Expect = 2e-74
 Identities = 144/257 (56%), Positives = 172/257 (66%), Gaps = 27/257 (10%)
 Frame = -3

Query: 691 MPPKK-----------------METKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLS 563
           MPPKK                 M  ++ ALE   AT EV+L            K+ ++++
Sbjct: 1   MPPKKNTTPPAMEARLENLELTMGARLQALERNHATTEVALIDIQMKQSENFDKLFTMIT 60

Query: 562 LSKGKNTA-------ESSHNNESVSTKQKNSE---LHGDALDEFRLSVKKVELPMFNGDD 413
               K T        ++S ++ + + K K SE   LHGDALDEFRLSVKKVELPMF+G+D
Sbjct: 61  RLSQKITPAENEKFFDASVDDGTPNVKSKPSEIPRLHGDALDEFRLSVKKVELPMFSGED 120

Query: 412 PAGWIARAEVYFNVQNTRPEIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLER 233
           PAGWIARAEVYF VQNTRPEIKV+L QLCM+GATIHFFK L+EE+E LTWE L  A+LER
Sbjct: 121 PAGWIARAEVYFRVQNTRPEIKVDLTQLCMEGATIHFFKALIEEDEALTWEGLKQALLER 180

Query: 232 YGGVSDGNVFEQLSSLRQXXXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKV 53
           YGGVSDGNVFEQLSSL+Q           ERL SQVPRL  +QY GYF+HGLKE IRG+V
Sbjct: 181 YGGVSDGNVFEQLSSLQQEGSVEDFIEDFERLLSQVPRLSDEQYCGYFLHGLKEEIRGRV 240

Query: 52  RSLITLGAVSRPKLMNV 2
           RSL+ LG +SR +LMNV
Sbjct: 241 RSLLALGPISRARLMNV 257


>ref|XP_004488259.1| PREDICTED: uncharacterized protein LOC101500384 [Cicer arietinum]
          Length = 748

 Score =  237 bits (604), Expect = 6e-70
 Identities = 129/241 (53%), Positives = 163/241 (67%), Gaps = 11/241 (4%)
 Frame = -3

Query: 691 MPPKK-METKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLS----------KGKN 545
           MPPKK ME KV ALE +++T+EV++            ++ISL++            K K 
Sbjct: 1   MPPKKKMENKVHALENRMSTLEVAIAEMRAQAAADQERLISLITQITPSKDMGDSVKQKG 60

Query: 544 TAESSHNNESVSTKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQN 365
             +S+H  +    K+   ++ G  LDEFR SVKK+ELPMF GDDPAGWIARAEVYF VQ+
Sbjct: 61  DGDSNHAKDE-QIKKLIQKMQGKKLDEFRQSVKKIELPMFTGDDPAGWIARAEVYFRVQD 119

Query: 364 TRPEIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSL 185
           T PEIKV+LAQLCM+G+TIHFFK L+E+   LTWE    A+LERYGG+ DG+VFEQLSSL
Sbjct: 120 TSPEIKVSLAQLCMEGSTIHFFKALVEDEIDLTWEVFKDALLERYGGLGDGSVFEQLSSL 179

Query: 184 RQXXXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMN 5
           +Q           ERL +QV RLP  Q++GYF+HGL + IRG+VRSL  LG VSR KLMN
Sbjct: 180 KQEGSVEEYIKEFERLVAQVGRLPEAQFVGYFIHGLHDGIRGRVRSLKALGPVSRAKLMN 239

Query: 4   V 2
           +
Sbjct: 240 L 240


>gb|PNX89412.1| hypothetical protein L195_g045531, partial [Trifolium pratense]
          Length = 330

 Score =  223 bits (569), Expect = 7e-69
 Identities = 127/252 (50%), Positives = 159/252 (63%), Gaps = 22/252 (8%)
 Frame = -3

Query: 691 MPPKK--------METKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKGKN--T 542
           MPPKK        M+ K+  LEE++  ++ +L             +I+L   S GK+  T
Sbjct: 1   MPPKKNQFDLIKGMDAKIATLEEELMGVKTTLSAMEKNQAT----LIALFEKSLGKSLRT 56

Query: 541 AESSHNNESVSTK------------QKNSELHGDALDEFRLSVKKVELPMFNGDDPAGWI 398
            E S  N+  STK               S+L G+AL EFR SVKKVELPMF+GDDPAGWI
Sbjct: 57  EEESVVNDRSSTKVLGEGSAKGSEKSGTSQLQGEALVEFRQSVKKVELPMFDGDDPAGWI 116

Query: 397 ARAEVYFNVQNTRPEIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVS 218
           +RAEVYF VQ+T P ++VNLAQLCM+G TIHFF  LL E E LTW +L  A+LERYGG  
Sbjct: 117 SRAEVYFRVQDTTPTVRVNLAQLCMEGPTIHFFNSLLNEEEELTWSRLKDALLERYGGHG 176

Query: 217 DGNVFEQLSSLRQXXXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLIT 38
           +G+V+EQL+ LRQ           E LT+Q+PRLP  Q+LGYF+HGLKE IRGKVRSL  
Sbjct: 177 EGDVYEQLTELRQTGNVDEYITEFEYLTAQIPRLPDKQFLGYFLHGLKEEIRGKVRSLAV 236

Query: 37  LGAVSRPKLMNV 2
           L  +SR K++ V
Sbjct: 237 LSDLSRSKVLQV 248


>gb|PNX90017.1| retrotransposon gag protein, partial [Trifolium pratense]
          Length = 354

 Score =  218 bits (556), Expect = 1e-66
 Identities = 119/238 (50%), Positives = 155/238 (65%), Gaps = 11/238 (4%)
 Frame = -3

Query: 682 KKMETKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKGKNTA--------ESSH 527
           + M+ K+ +LE +++ ++ +L             +I+L   S GK+ A         +  
Sbjct: 12  RNMDEKIASLEAELSGVKTTLHNMEQNQAR----LIALFEKSIGKSIAVEDEIAVDPAKK 67

Query: 526 NNESVSTKQKNS---ELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRP 356
           + E    +Q +S    L  D+L EFR SVKKVELPMFNG+DPAGWI+RAEVYF VQNTRP
Sbjct: 68  SIEGSMRRQSHSGSNHLDDDSLAEFRRSVKKVELPMFNGEDPAGWISRAEVYFRVQNTRP 127

Query: 355 EIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQX 176
           EIKVNLAQLCM+G TIHFF  L+ ENE L WE L   +LERYGG  +G+V+EQL+ LRQ 
Sbjct: 128 EIKVNLAQLCMEGGTIHFFNSLINENEKLDWETLKQELLERYGGQGEGDVYEQLTELRQK 187

Query: 175 XXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMNV 2
                     E LT+Q+PRLP  Q+LGYF+HGLKE IRGKVRSL  +G ++R K++ V
Sbjct: 188 GSVDDYINDFEYLTAQIPRLPDKQFLGYFLHGLKEEIRGKVRSLSVVGELTRSKVLQV 245


>dbj|GAU10118.1| hypothetical protein TSUD_422340 [Trifolium subterraneum]
          Length = 272

 Score =  209 bits (533), Expect = 3e-64
 Identities = 113/238 (47%), Positives = 149/238 (62%), Gaps = 13/238 (5%)
 Frame = -3

Query: 676 METKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKGKNT------------AES 533
           M+ K+ +LEE+I  ++ +L             +I++   S GK              +E 
Sbjct: 1   MDAKIASLEEEIHGVKATLASMEKNQAT----LIAMFEKSLGKTIPTEEEVALPEGGSEK 56

Query: 532 SHNNESVSTKQKNSELHGD-ALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRP 356
           +   ES      N+    D  + EFR SVKK+ELPMF+G DPAGWI+RAEVYF VQ T P
Sbjct: 57  AIGGESAKISGNNTHRFSDETMTEFRQSVKKIELPMFDGKDPAGWISRAEVYFRVQETTP 116

Query: 355 EIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQX 176
           ++KVNLAQLCM+G TIHFF  LL E+E LTW QL  A+LERYGG  DG+V+EQL+ LRQ 
Sbjct: 117 KVKVNLAQLCMNGPTIHFFNSLLNESEDLTWNQLKEALLERYGGHGDGDVYEQLTELRQI 176

Query: 175 XXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMNV 2
                     E LT+Q+P++P  Q+LGYF+HGLK  I+GKVRSLI +G +SR K++ V
Sbjct: 177 GSVEEYITGFEYLTAQIPKIPDKQFLGYFLHGLKPEIKGKVRSLIAVGGLSRAKVLQV 234


>dbj|GAU40483.1| hypothetical protein TSUD_286380 [Trifolium subterraneum]
          Length = 422

 Score =  214 bits (545), Expect = 4e-64
 Identities = 116/235 (49%), Positives = 151/235 (64%), Gaps = 9/235 (3%)
 Frame = -3

Query: 679 KMETKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLS--LSKGKNTAESSHNNESV-- 512
           KME++V +LE  +  +  S+             + +++   L K     E+S  N     
Sbjct: 13  KMESRVESLEGGLNEVRASIVDVQKTLKESLASMTAMMEKCLGKSATVGENSSGNGGFIP 72

Query: 511 STKQK-----NSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRPEIK 347
           S K+K     +S+ +GD + EFR S KKVELP F+GDD AGWI+RAEVYF VQNT  EIK
Sbjct: 73  SPKEKTDGIGSSQSNGDVIAEFRHSAKKVELPSFDGDDQAGWISRAEVYFRVQNTSSEIK 132

Query: 346 VNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQXXXX 167
           V+LAQLCM+G+TIHFF  LL ENE L+WE L  A+LERYGG  +G+V++QL+ L+Q    
Sbjct: 133 VSLAQLCMEGSTIHFFNSLLRENEDLSWEDLKEALLERYGGHGEGDVYKQLTELKQEGTV 192

Query: 166 XXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMNV 2
                  E L +Q+PRLP  QYLGYF+HGLK  +RGKVRSL+ LG +SR KLM V
Sbjct: 193 EDYIIDFEYLVAQIPRLPEKQYLGYFLHGLKTEVRGKVRSLVALGEISRSKLMQV 247


>dbj|GAU17298.1| hypothetical protein TSUD_110150 [Trifolium subterraneum]
          Length = 1558

 Score =  223 bits (567), Expect = 3e-63
 Identities = 126/253 (49%), Positives = 161/253 (63%), Gaps = 23/253 (9%)
 Frame = -3

Query: 691 MPPKK---METKVTALEEKIATMEV----SLXXXXXXXXXXXXKIISLLSLSKGKNTAE- 536
           MP +K   ME KV  LE++IA M++    S+             ++S++    GK T E 
Sbjct: 1   MPRRKKTIMEAKVADLEQEIALMKLAMANSMAEIQNTVKASQDAMLSMMEKHFGKRTNEV 60

Query: 535 ---------------SSHNNESVSTKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGW 401
                          S   + SV+TK K   LHG+  DEFR SVKKVELP F+GDDPAGW
Sbjct: 61  EDISSEPHAGITKVTSLKGSASVATKSK--PLHGEVWDEFRRSVKKVELPSFDGDDPAGW 118

Query: 400 IARAEVYFNVQNTRPEIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGV 221
           I+ AEVYF VQ T P +KV+LAQL M+G+TIHFF  LL+EN  LTWE L S +LERYGG+
Sbjct: 119 ISCAEVYFRVQETNPVVKVSLAQLSMEGSTIHFFNSLLDENPDLTWEDLKSELLERYGGL 178

Query: 220 SDGNVFEQLSSLRQXXXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLI 41
            +G+V+EQL+ +RQ           ERLT+QVPRLP  Q+LGYF+HGLK  IRGKVRS +
Sbjct: 179 GEGDVYEQLTEIRQRGTVEDYIQEFERLTAQVPRLPEKQFLGYFLHGLKVEIRGKVRSFV 238

Query: 40  TLGAVSRPKLMNV 2
           T+G++SR KL +V
Sbjct: 239 TMGSLSRAKLFHV 251


>gb|PNX93254.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1534

 Score =  222 bits (566), Expect = 5e-63
 Identities = 118/229 (51%), Positives = 152/229 (66%), Gaps = 4/229 (1%)
 Frame = -3

Query: 676 METKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKGKNTAESSHNNESVS---- 509
           M+ K+ +LE +I+ ++ +L             +I+L   S GK  A+        S    
Sbjct: 14  MDAKIASLEAEISGVKTTLANMEQNQAR----LIALFEKSLGKPVADEGEKIGEGSVQHI 69

Query: 508 TKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRPEIKVNLAQL 329
           ++  ++ L  D++ EFR SVKKVELP+FNG+DPAGWI+RAEVYF VQNTR EIKVNLAQL
Sbjct: 70  SRSNSNHLDDDSMAEFRRSVKKVELPVFNGEDPAGWISRAEVYFRVQNTRSEIKVNLAQL 129

Query: 328 CMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQXXXXXXXXXX 149
           CM+G TIHFF  L+ ENE L WEQL   +LERYGG  DG+V+EQL+ LRQ          
Sbjct: 130 CMEGPTIHFFNSLINENENLDWEQLKQELLERYGGHGDGDVYEQLTELRQKGNVDEYIND 189

Query: 148 XERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMNV 2
            E LT+Q+PRLP  Q+LGYF+HGLKE IRGKVRSL  +G +SR K++ V
Sbjct: 190 FEYLTAQIPRLPDKQFLGYFLHGLKEEIRGKVRSLSVMGDLSRSKVLQV 238


>gb|PNX76949.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 788

 Score =  218 bits (556), Expect = 9e-63
 Identities = 120/257 (46%), Positives = 163/257 (63%), Gaps = 27/257 (10%)
 Frame = -3

Query: 691 MPPK--------KMETKVTALEEKIATMEVSLXXXXXXXXXXXXKI-------------- 578
           MPPK        +M++++ ALEE+IA ++ +L             +              
Sbjct: 1   MPPKQNQITLIRRMDSRIAALEEEIAGVKATLSSMEQGQATLIAMMERSLGKSIAKGDEE 60

Query: 577 ISLLSLSKGKNTAESSHNNESVSTKQK-----NSELHGDALDEFRLSVKKVELPMFNGDD 413
           + +L+ S GK + E    + +  +K++     +++L+ + L EFR SVKKVELPMFNG+D
Sbjct: 61  LVVLNDSAGKGSGEGGSKHRTEGSKKQTEGSFSNQLNDETLLEFRRSVKKVELPMFNGED 120

Query: 412 PAGWIARAEVYFNVQNTRPEIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLER 233
           PAGWI+RAEVYF VQ T PE+KVNLAQLCM+GATIHFF  L+ E+EGL WE L  A+L R
Sbjct: 121 PAGWISRAEVYFRVQGTSPEVKVNLAQLCMEGATIHFFNSLIGEDEGLNWEGLKEALLGR 180

Query: 232 YGGVSDGNVFEQLSSLRQXXXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKV 53
           YGG  DG+V+EQL+ L+Q           E L +Q+PRLP  Q+LGYF+HGLK  IRGKV
Sbjct: 181 YGGHGDGDVYEQLTDLKQKGTVDEYITEFEYLIAQIPRLPDKQFLGYFLHGLKMEIRGKV 240

Query: 52  RSLITLGAVSRPKLMNV 2
           +SLI +G +SR KL+ V
Sbjct: 241 QSLIAVGEMSRAKLLQV 257


>gb|PNX92072.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1498

 Score =  221 bits (562), Expect = 2e-62
 Identities = 111/184 (60%), Positives = 137/184 (74%), Gaps = 1/184 (0%)
 Frame = -3

Query: 550 KNTAESS-HNNESVSTKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFN 374
           KN  E+S H+N    T+  N+ L G+AL EFR SVKKVELP F+G+DPAGWI+RAEVYF 
Sbjct: 40  KNAGEASVHSN----TQSSNNHLEGEALAEFRRSVKKVELPTFDGEDPAGWISRAEVYFR 95

Query: 373 VQNTRPEIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQL 194
           VQNTR E+KVNLAQLCM+G TIHFF  L+ ENE L+W+QL  A+LERYGG  +G+V+EQL
Sbjct: 96  VQNTRSEVKVNLAQLCMEGPTIHFFNSLINENENLSWDQLKQALLERYGGHGEGDVYEQL 155

Query: 193 SSLRQXXXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPK 14
           + LRQ           E LT+Q+PRLP  Q+LGYF+HGLKE IRGKVRS   +G +SR K
Sbjct: 156 TELRQRGDVDDYINDFEYLTAQIPRLPDKQFLGYFLHGLKEEIRGKVRSFSVMGDLSRSK 215

Query: 13  LMNV 2
           ++ V
Sbjct: 216 VLQV 219


>gb|PNY17867.1| hypothetical protein L195_g014621, partial [Trifolium pratense]
          Length = 1501

 Score =  220 bits (561), Expect = 2e-62
 Identities = 117/237 (49%), Positives = 157/237 (66%), Gaps = 12/237 (5%)
 Frame = -3

Query: 676  METKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKGKN------------TAES 533
            M+ K+ +LE +I+ ++ +L             +I++   S GK+            T + 
Sbjct: 1123 MDDKIASLEAEISGVKTTLANMEINQAK----LIAMFEKSIGKSVEVGNERIVEDPTQKI 1178

Query: 532  SHNNESVSTKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRPE 353
            +  +    ++  +++L G+AL EFR SVKKVELPMF G+DPAGWI+RAE+YF VQNTRPE
Sbjct: 1179 AEGSAQRVSQSGSNQLDGEALAEFRRSVKKVELPMFVGEDPAGWISRAEIYFRVQNTRPE 1238

Query: 352  IKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQXX 173
            IKVNLAQLCM+G TIHFF  L+ ENE L WEQL  A+LERYGG  +G+V+EQL+ LRQ  
Sbjct: 1239 IKVNLAQLCMEGPTIHFFNSLINENEELNWEQLKHALLERYGGHGEGDVYEQLTELRQRG 1298

Query: 172  XXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMNV 2
                     E LT+Q+PRLP  Q+LGYF+HGLKE +RGKVRSL  +G +SR K++ V
Sbjct: 1299 SVDDYINDFEYLTAQIPRLPDKQFLGYFLHGLKEEVRGKVRSLSVMGDLSRSKVLQV 1355


>gb|PNX73711.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 775

 Score =  217 bits (552), Expect = 3e-62
 Identities = 117/244 (47%), Positives = 158/244 (64%), Gaps = 19/244 (7%)
 Frame = -3

Query: 676 METKVTALEEKIATMEVSLXXXXXXXXXXXXKI--------------ISLLSLSKGKNTA 539
           ME+++ ALEE+IA ++ +L             +              + +L+ S GK + 
Sbjct: 1   MESRIAALEEEIAGVKATLSSMEQGQATLIAMMERSLGKSIAKGDEELVVLNDSAGKGSG 60

Query: 538 ESSHNNESVSTKQK-----NSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFN 374
           E    + +  +K++     +++L+ + L EFR SVKKVELPMFNG+DPAGWI+RAEVYF 
Sbjct: 61  EGGSKHRTEGSKKQTEGSFSNQLNDETLLEFRRSVKKVELPMFNGEDPAGWISRAEVYFR 120

Query: 373 VQNTRPEIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQL 194
           VQ T PE+KVNLAQLCM+GATIHFF  L+ E+EGL WE L  A+L RYGG  DG+V+EQL
Sbjct: 121 VQGTSPEVKVNLAQLCMEGATIHFFNSLIGEDEGLNWEGLKEALLGRYGGHGDGDVYEQL 180

Query: 193 SSLRQXXXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPK 14
           + L+Q           E L +Q+PRLP  Q+LGYF+HGLK  IRGKV+SLI +G +SR K
Sbjct: 181 TDLKQKGTVDEYITEFEYLIAQIPRLPDKQFLGYFLHGLKMEIRGKVQSLIAVGEMSRAK 240

Query: 13  LMNV 2
           L+ V
Sbjct: 241 LLQV 244


>dbj|GAU42077.1| hypothetical protein TSUD_326550 [Trifolium subterraneum]
          Length = 1545

 Score =  220 bits (560), Expect = 3e-62
 Identities = 123/239 (51%), Positives = 155/239 (64%), Gaps = 14/239 (5%)
 Frame = -3

Query: 676 METKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKG----KNTAESS------H 527
           +ET ++ ++  +ATME +             K I +   S G    KN  E+S       
Sbjct: 23  LETNMSGVKATLATMEQNQAKLIAMFEKSLGKSIPVAEESVGQGGEKNNGEASAQHLGEK 82

Query: 526 NNESVSTKQK----NSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTR 359
           NN   S +      ++ L G+AL EFR SVKKVELP+F+G+DPAGWI+RAEVYF VQ TR
Sbjct: 83  NNGEASAQHLGHTGSNHLSGEALAEFRRSVKKVELPLFDGEDPAGWISRAEVYFRVQETR 142

Query: 358 PEIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQ 179
           PE+KVNLAQLCM+GATIHFF  LL ENEGL+WE L  A+LERYGG  +G+V+EQL+ LRQ
Sbjct: 143 PEVKVNLAQLCMEGATIHFFNSLLNENEGLSWEALKEALLERYGGHGEGDVYEQLTELRQ 202

Query: 178 XXXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMNV 2
                      E LT+Q+PRLP  Q+LGYF HGLKE IR KVRSL  +G +SR K++ V
Sbjct: 203 RSNVDDYINDFEYLTAQIPRLPDKQFLGYFSHGLKEEIRRKVRSLSVMGNLSRSKVLQV 261


>gb|PNY15768.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1583

 Score =  219 bits (557), Expect = 8e-62
 Identities = 117/252 (46%), Positives = 155/252 (61%), Gaps = 22/252 (8%)
 Frame = -3

Query: 691 MPPKK--------METKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKGKNTAE 536
           MPPKK        ME +V ALE+  A M+ +L             +I++L    GK+  E
Sbjct: 1   MPPKKVTLPAFKEMEARVEALEKNFAGMQSTLADVQNTVKTNHTDLIAMLEKCLGKSLTE 60

Query: 535 SSHNNESVS---------TKQKNSE-----LHGDALDEFRLSVKKVELPMFNGDDPAGWI 398
              +  +           T+ K  +     LHGDA+ EFR S KKVELP FNG+DPAGWI
Sbjct: 61  DGGSASATGQNSAARSGVTEPKTQQIPIINLHGDAMTEFRQSAKKVELPAFNGEDPAGWI 120

Query: 397 ARAEVYFNVQNTRPEIKVNLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVS 218
           +RAEVYF VQ T PE+KVNLAQLCM+G+TIHFF  L+ E E LTW++L  ++LERYGG  
Sbjct: 121 SRAEVYFRVQGTTPEVKVNLAQLCMEGSTIHFFNSLVGEEENLTWDRLKESLLERYGGHG 180

Query: 217 DGNVFEQLSSLRQXXXXXXXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLIT 38
           +G+V+EQL+ L+Q           E L +Q+P+LP  Q+ GYF+HGLK  IRGKVRSL  
Sbjct: 181 EGDVYEQLTELKQEGTVEEYITEFEYLIAQIPKLPEKQFRGYFIHGLKTEIRGKVRSLAA 240

Query: 37  LGAVSRPKLMNV 2
           +G ++R KL+ +
Sbjct: 241 MGEMNRTKLLQI 252


>gb|PNX88494.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 441

 Score =  208 bits (529), Expect = 1e-61
 Identities = 109/229 (47%), Positives = 145/229 (63%), Gaps = 4/229 (1%)
 Frame = -3

Query: 676 METKVTALEEKIATMEV----SLXXXXXXXXXXXXKIISLLSLSKGKNTAESSHNNESVS 509
           ME K+T LE ++A M+     S+             +I ++    GK         E V 
Sbjct: 1   MEAKITDLENELAAMKTTFADSIAEVQRTARENQTALIQMMERVLGKQPTIVIE--EPVE 58

Query: 508 TKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRPEIKVNLAQL 329
            + K+  +  + LDEFR SVKKVELP F GDDPAGWI+RAE YF V+ T P +KV+LAQL
Sbjct: 59  AETKSPVVGNELLDEFRRSVKKVELPAFTGDDPAGWISRAETYFRVKGTSPAVKVSLAQL 118

Query: 328 CMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQXXXXXXXXXX 149
            M+G+TIHFF  LLEE   LTWE   S +LERYGG+ +G+V+E+L+ +RQ          
Sbjct: 119 SMEGSTIHFFNSLLEEKPDLTWEDFRSELLERYGGLGEGDVYEKLTDIRQKGTVEEYIQE 178

Query: 148 XERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMNV 2
            ERLT+Q+PR+P  Q+LGYF+HGLK+ IRGKVRS I +G ++R KL +V
Sbjct: 179 FERLTAQIPRIPDKQFLGYFLHGLKDEIRGKVRSFIAMGPITRSKLFHV 227


>dbj|GAU42300.1| hypothetical protein TSUD_136860 [Trifolium subterraneum]
          Length = 1523

 Score =  216 bits (550), Expect = 7e-61
 Identities = 115/234 (49%), Positives = 152/234 (64%), Gaps = 9/234 (3%)
 Frame = -3

Query: 676 METKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKGKNTA---------ESSHN 524
           ME++V ALE  I  +   L             II+++    GK+ A         +S+ N
Sbjct: 1   MESRVEALEGGINEVRTQLADVQQAMKESHANIIAMMEKCLGKSLATDEQSTGAGQSAQN 60

Query: 523 NESVSTKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRPEIKV 344
           +   +   ++S L G+AL EFR SVK+VELP F+G+DPAGWI+RAEVYF VQNT P +KV
Sbjct: 61  SPGKTKAAESSTLSGEALTEFRHSVKRVELPPFDGEDPAGWISRAEVYFRVQNTMPAVKV 120

Query: 343 NLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQXXXXX 164
           +LAQLCM+G+TIHFF  LL E E L+WE+L  A+LERYGG  +G+V+EQL+ L+Q     
Sbjct: 121 SLAQLCMEGSTIHFFNSLLREKEDLSWEELKEALLERYGGHGEGDVYEQLTELKQEGTVE 180

Query: 163 XXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMNV 2
                 E L +Q+P+LP  Q+ GYF+HGLK  IRGKVRSLI +G +SR KLM V
Sbjct: 181 DYITDFEYLIAQIPKLPEKQFQGYFLHGLKVEIRGKVRSLIAMGEMSRSKLMQV 234


>gb|PNX92424.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1554

 Score =  216 bits (549), Expect = 1e-60
 Identities = 114/234 (48%), Positives = 153/234 (65%), Gaps = 8/234 (3%)
 Frame = -3

Query: 679 KMETKVTALEEKIATMEVSLXXXXXXXXXXXXKIISLLSLSKGKNT--------AESSHN 524
           KME++V ALE  ++ +  +L            ++I+++    GK+         A+    
Sbjct: 13  KMESRVEALEGGLSEVRTTLADVQRTVKEGHDRLIAMMEKCIGKSIVVEEPGIGADQILQ 72

Query: 523 NESVSTKQKNSELHGDALDEFRLSVKKVELPMFNGDDPAGWIARAEVYFNVQNTRPEIKV 344
                TK+++S  H +AL EFR S K+VELP F+GDDPAGWI+RAEVYF VQNT P IKV
Sbjct: 73  ISPEKTKEESSNSHNEALVEFRHSAKRVELPSFDGDDPAGWISRAEVYFRVQNTTPAIKV 132

Query: 343 NLAQLCMDGATIHFFKGLLEENEGLTWEQLTSAMLERYGGVSDGNVFEQLSSLRQXXXXX 164
           +L+QLCM+G TIHFF  LL+ENE L+W++L  A+LERYGG  +G+V+EQL+ LRQ     
Sbjct: 133 SLSQLCMEGPTIHFFNSLLKENEDLSWDELKEALLERYGGHGEGDVYEQLTELRQEGTVE 192

Query: 163 XXXXXXERLTSQVPRLPTDQYLGYFVHGLKESIRGKVRSLITLGAVSRPKLMNV 2
                 E L +Q+P+LP  Q+ GYF+HGLK  IRGKVRSL+ LG +SR KLM V
Sbjct: 193 EYITDFEYLIAQIPKLPEKQFQGYFLHGLKLEIRGKVRSLVALGEMSRTKLMQV 246