BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00022286
         (641 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY18017.1| copia-type polyprotein [Trifolium pratense]            134   9e-50
dbj|GAU22770.1| hypothetical protein TSUD_129820 [Trifolium subt...   115   9e-43
dbj|GAU35215.1| hypothetical protein TSUD_204910 [Trifolium subt...   110   3e-41
dbj|GAU37611.1| hypothetical protein TSUD_365320 [Trifolium subt...   109   4e-41
dbj|GAU50483.1| hypothetical protein TSUD_409690 [Trifolium subt...   107   2e-40
gb|PNX96991.1| retrotransposon-related protein [Trifolium pratense]   103   6e-40
dbj|GAU12596.1| hypothetical protein TSUD_132060 [Trifolium subt...   106   8e-40
gb|PNX68532.1| copia-type polyprotein [Trifolium pratense]            110   1e-39
gb|PNX66461.1| hypothetical protein L195_g055105, partial [Trifo...   108   1e-39
dbj|GAU42845.1| hypothetical protein TSUD_387380 [Trifolium subt...   104   2e-39
dbj|GAU33377.1| hypothetical protein TSUD_365030 [Trifolium subt...   102   3e-39
dbj|GAU39052.1| hypothetical protein TSUD_396570 [Trifolium subt...   106   4e-39
dbj|GAU22332.1| hypothetical protein TSUD_106600 [Trifolium subt...   107   4e-39
dbj|GAU46965.1| hypothetical protein TSUD_143070 [Trifolium subt...   106   4e-39
dbj|GAU33196.1| hypothetical protein TSUD_206550 [Trifolium subt...   108   5e-39
gb|KYP66838.1| Retrovirus-related Pol polyprotein from transposo...   103   2e-38
dbj|GAU50842.1| hypothetical protein TSUD_232190 [Trifolium subt...   108   2e-38
gb|KYP68287.1| Retrovirus-related Pol polyprotein from transposo...   103   2e-38
gb|KYP31826.1| Retrovirus-related Pol polyprotein from transposo...   103   2e-38
gb|KYP61818.1| Retrovirus-related Pol polyprotein from transposo...   103   2e-38

>gb|PNY18017.1| copia-type polyprotein [Trifolium pratense]
          Length = 999

 Score =  134 bits (337), Expect(3) = 9e-50
 Identities = 65/107 (60%), Positives = 80/107 (74%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
            L +G+ FPI A +   E++CY D+DWCGD +DRRSTTGY F F  A IS  S+ Q +VAL
Sbjct: 826  LEFGILFPISARNAKPEIVCYSDADWCGDKIDRRSTTGYFFKFMNASISWCSRKQPVVAL 885

Query: 393  SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            SSCEAE I G+ AA Q  W+ESVLKELK+D E+P+KL I NKSAI+L
Sbjct: 886  SSCEAEYIAGSYAACQALWIESVLKELKVDVERPIKLQIDNKSAINL 932



 Score = 81.3 bits (199), Expect(3) = 9e-50
 Identities = 35/57 (61%), Positives = 45/57 (78%)
 Frame = -2

Query: 253  LHGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGV 83
            LHGRSKH+ T+FHFLR QV  G +EVIHC T  Q+AD +TK+++TD+F+ LR  LGV
Sbjct: 938  LHGRSKHIETRFHFLREQVNQGSLEVIHCATGSQIADAMTKSLKTDRFLSLRSSLGV 994



 Score = 30.8 bits (68), Expect(3) = 9e-50
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 640 FMSKPRMSHNQETTKILRYVKGTQIWSVL 554
           FM +PR SH     ++LRY+ GT  + +L
Sbjct: 803 FMEEPRKSHMNAARRVLRYIAGTLEFGIL 831


>dbj|GAU22770.1| hypothetical protein TSUD_129820 [Trifolium subterraneum]
          Length = 1125

 Score =  115 bits (287), Expect(3) = 9e-43
 Identities = 60/105 (57%), Positives = 73/105 (69%)
 Frame = -3

Query: 567  YGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVALSS 388
            YG+ FP    +   EL  + DSDWCGD  DRRST+GY F F  + IS  SK Q +VALSS
Sbjct: 956  YGLFFPTRNCATKMELEGFSDSDWCGDKDDRRSTSGYWFSFGNSSISWSSKKQNIVALSS 1015

Query: 387  CEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            CEAE +  A AA Q  W+ES+L+ELKI++ KPMKL + NKSAISL
Sbjct: 1016 CEAEYVAAAQAACQAVWLESLLEELKINYVKPMKLNVDNKSAISL 1060



 Score = 77.4 bits (189), Expect(3) = 9e-43
 Identities = 33/57 (57%), Positives = 45/57 (78%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVV 80
            HGRSKH+ TKFHFLRNQV    + V+HCRT +Q+A+I+TK +R D+F +LR  LG++
Sbjct: 1067 HGRSKHIETKFHFLRNQVSKEKLIVVHCRTEVQIANIMTKPLRADRFKELRKKLGIM 1123



 Score = 30.4 bits (67), Expect(3) = 9e-43
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQ 569
            FMS P+ SH     +ILRY+KGT+
Sbjct: 931  FMSNPKTSHLIAAKRILRYLKGTK 954


>dbj|GAU35215.1| hypothetical protein TSUD_204910 [Trifolium subterraneum]
          Length = 1149

 Score =  110 bits (274), Expect(3) = 3e-41
 Identities = 55/107 (51%), Positives = 78/107 (72%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
            + +GV FP + ++   +L  + DSDWCGD +DRRSTTGY+F F  A IS  SK Q ++AL
Sbjct: 973  MEFGVLFPNNISNSVNKLEGFSDSDWCGDHVDRRSTTGYIFKFLHAPISWCSKKQPVIAL 1032

Query: 393  SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            SSCEAE I  A AA Q  W+ES+LK+++++  +P++LL+ NKSAI+L
Sbjct: 1033 SSCEAEYIACAFAACQGIWLESLLKDIQVELTEPIQLLVDNKSAINL 1079



 Score = 77.4 bits (189), Expect(3) = 3e-41
 Identities = 34/60 (56%), Positives = 44/60 (73%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HGRSKH+ T+FHF+R QV NG I + HC T +Q ADILTK ++ D+F+KLR  +GV   E
Sbjct: 1086 HGRSKHIETRFHFIREQVNNGRIVLKHCPTEVQEADILTKGLKHDRFIKLRSKIGVTTLE 1145



 Score = 30.0 bits (66), Expect(3) = 3e-41
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQIWSVL 554
            F+  P+ SH     +ILRYV+GT  + VL
Sbjct: 950  FVESPKQSHMVAVKRILRYVQGTMEFGVL 978


>dbj|GAU37611.1| hypothetical protein TSUD_365320 [Trifolium subterraneum]
          Length = 718

 Score =  109 bits (273), Expect(3) = 4e-41
 Identities = 55/107 (51%), Positives = 77/107 (71%)
 Frame = -3

Query: 573 LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
           + +GV FP + ++    L  + DSDWCGD +DRRSTTGY+F F  A IS  SK Q ++AL
Sbjct: 542 MEFGVLFPNNISNSVNRLEGFSDSDWCGDHVDRRSTTGYIFKFLHAPISWCSKKQPVIAL 601

Query: 393 SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
           SSCEAE I  A AA Q  W+ES+LK+++++  +P++LL+ NKSAI+L
Sbjct: 602 SSCEAEYIACAFAACQGIWLESLLKDIQVELTEPIQLLVDNKSAINL 648



 Score = 77.4 bits (189), Expect(3) = 4e-41
 Identities = 34/60 (56%), Positives = 44/60 (73%)
 Frame = -2

Query: 250 HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
           HGRSKH+ T+FHF+R QV NG I + HC T +Q ADILTK ++ D+F+KLR  +GV   E
Sbjct: 655 HGRSKHIETRFHFIREQVNNGRIVLNHCPTEVQEADILTKGLKHDRFIKLRSKIGVTTLE 714



 Score = 30.0 bits (66), Expect(3) = 4e-41
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 640 FMSKPRMSHNQETTKILRYVKGTQIWSVL 554
           F+  P+ SH     +ILRYV+GT  + VL
Sbjct: 519 FVESPKQSHMVAVKRILRYVQGTMEFGVL 547


>dbj|GAU50483.1| hypothetical protein TSUD_409690 [Trifolium subterraneum]
          Length = 1073

 Score =  107 bits (267), Expect(3) = 2e-40
 Identities = 54/107 (50%), Positives = 76/107 (71%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
            + +GV FP + ++    L  + DSDWCGD +DRRSTTGY+F F  A IS  SK Q ++AL
Sbjct: 897  MEFGVLFPNNISNSVNRLEGFSDSDWCGDHVDRRSTTGYIFKFLHAPISWCSKKQPVIAL 956

Query: 393  SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            SSCEAE I    AA Q  W+ES+LK+++++  +P++LL+ NKSAI+L
Sbjct: 957  SSCEAEYIACDFAACQGIWLESLLKDIQVELTEPIQLLVDNKSAINL 1003



 Score = 77.4 bits (189), Expect(3) = 2e-40
 Identities = 34/60 (56%), Positives = 44/60 (73%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HGRSKH+ T+FHF+R QV NG I + HC T +Q ADILTK ++ D+F+KLR  +GV   E
Sbjct: 1010 HGRSKHIETRFHFIREQVNNGRIVLNHCPTEVQEADILTKGLKHDRFIKLRSKIGVTTLE 1069



 Score = 30.0 bits (66), Expect(3) = 2e-40
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 640 FMSKPRMSHNQETTKILRYVKGTQIWSVL 554
           F+  P+ SH     +ILRYV+GT  + VL
Sbjct: 874 FVESPKQSHMVAVKRILRYVQGTMEFGVL 902


>gb|PNX96991.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1333

 Score =  103 bits (256), Expect(3) = 6e-40
 Identities = 51/107 (47%), Positives = 73/107 (68%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
            + YGV FP    S   EL+ + D+DWCGD ++R+ST+GY+F FQ A +S  SK Q ++AL
Sbjct: 1158 IHYGVLFPYSNDSTKLELVGFSDADWCGDKIERKSTSGYIFKFQNAPVSWCSKKQSVIAL 1217

Query: 393  SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            SSCEAE + G++AA Q  W++S+L E+ I     + L + NKSAI+L
Sbjct: 1218 SSCEAEYVAGSMAACQANWLQSLLSEMNIIDNITVVLKLDNKSAINL 1264



 Score = 78.2 bits (191), Expect(3) = 6e-40
 Identities = 34/63 (53%), Positives = 50/63 (79%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HG+SKH+ T+FH+LR+QV  G + + +C T  Q ADILTKAV+ DQF+KLR ++GVV F+
Sbjct: 1271 HGKSKHIETRFHYLRDQVNKGKLNLEYCSTNNQQADILTKAVKRDQFLKLRREMGVVSFD 1330

Query: 70   TMS 62
            +++
Sbjct: 1331 SLN 1333



 Score = 32.0 bits (71), Expect(3) = 6e-40
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQIWSVL-PY 548
            FMSKP  SH     +ILRY+ GT  + VL PY
Sbjct: 1135 FMSKPLKSHFLAAKRILRYINGTIHYGVLFPY 1166


>dbj|GAU12596.1| hypothetical protein TSUD_132060 [Trifolium subterraneum]
          Length = 1096

 Score =  106 bits (265), Expect(3) = 8e-40
 Identities = 54/107 (50%), Positives = 72/107 (67%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
            + YGV FP    S   EL  + D+DWCGD +DRRST+GY+F FQ A +S  SK Q ++ L
Sbjct: 921  IHYGVLFPYSRDSSKLELNGFSDADWCGDKVDRRSTSGYVFKFQNAPVSWCSKKQSVIVL 980

Query: 393  SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            SSCEAE + G++AA Q  W++S+L E+KI     + L I NKSAI+L
Sbjct: 981  SSCEAEYVAGSLAACQANWLQSLLSEMKITDNITVMLKIDNKSAINL 1027



 Score = 76.6 bits (187), Expect(3) = 8e-40
 Identities = 34/63 (53%), Positives = 49/63 (77%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HG+SKH+ T FHFLR+QV  G + + +C T  Q ADILTKAV+ DQF+KLR ++G+V F+
Sbjct: 1034 HGKSKHIETMFHFLRDQVNKGKLSLEYCSTNDQHADILTKAVKGDQFLKLRREMGIVSFD 1093

Query: 70   TMS 62
            +++
Sbjct: 1094 SLN 1096



 Score = 29.6 bits (65), Expect(3) = 8e-40
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 640 FMSKPRMSHNQETTKILRYVKGTQIWSVL-PY 548
           FMSKP  S+     +ILRY+ GT  + VL PY
Sbjct: 898 FMSKPLKSYLLAAKRILRYINGTIHYGVLFPY 929


>gb|PNX68532.1| copia-type polyprotein [Trifolium pratense]
          Length = 194

 Score =  110 bits (274), Expect(3) = 1e-39
 Identities = 54/107 (50%), Positives = 72/107 (67%)
 Frame = -3

Query: 573 LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
           +RYG+ FP         L  Y DSDW GD  DRRST+GY+ ++ GA I+  +K Q + AL
Sbjct: 23  MRYGLLFPTGLKDDCESLSSYSDSDWGGDATDRRSTSGYVMLYNGASIAWCTKKQPVTAL 82

Query: 393 SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
           S+CEAE I G  A  Q  W++SVL+ELK + +KP+KL+I NKSAI+L
Sbjct: 83  STCEAEYIAGTFATCQMVWLDSVLRELKCELQKPLKLMIDNKSAINL 129



 Score = 71.2 bits (173), Expect(3) = 1e-39
 Identities = 31/57 (54%), Positives = 44/57 (77%)
 Frame = -2

Query: 250 HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVV 80
           HGRSKH+ T+FHF+R QV NG I +++C T +Q+AD  TK+V+ D+F  LR+ LG+V
Sbjct: 136 HGRSKHIETRFHFIREQVMNGNIVLVYCPTEIQLADGFTKSVKLDRFEFLREKLGLV 192



 Score = 31.2 bits (69), Expect(3) = 1e-39
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 637 MSKPRMSHNQETTKILRYVKGTQIWSVL 554
           M+KP+ SH     +I RYVKGT  + +L
Sbjct: 1   MNKPKKSHMNAARRIFRYVKGTMRYGLL 28


>gb|PNX66461.1| hypothetical protein L195_g055105, partial [Trifolium pratense]
          Length = 254

 Score =  108 bits (270), Expect(3) = 1e-39
 Identities = 56/107 (52%), Positives = 73/107 (68%)
 Frame = -3

Query: 573 LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
           + YGV FP    S   EL  + D+DWCGD +DRRST+GYLF FQ A +S  SK Q ++AL
Sbjct: 81  IHYGVLFPYSKDSVKLELNGFSDADWCGDKVDRRSTSGYLFKFQNAPVSWCSKKQSVIAL 140

Query: 393 SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
           SSCEAE + G++AA Q  W++S+L E+KI     + L I NKSAI+L
Sbjct: 141 SSCEAEYVAGSLAACQANWLQSLLNEMKIIDNITIMLKIDNKSAINL 187



 Score = 74.7 bits (182), Expect(3) = 1e-39
 Identities = 31/61 (50%), Positives = 47/61 (77%)
 Frame = -2

Query: 250 HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
           HG+SKH+ T+FHFL++QV  G + + +C T  Q ADI+T AV+ DQF+KLR ++G+V F+
Sbjct: 194 HGKSKHIETRFHFLKDQVNKGKLSLEYCSTDNQQADIMTNAVKRDQFLKLRREIGIVCFD 253

Query: 70  T 68
           +
Sbjct: 254 S 254



 Score = 28.9 bits (63), Expect(3) = 1e-39
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 640 FMSKPRMSHNQETTKILRYVKGTQIWSVL-PY 548
           FMSKP   H     +IL+Y+ GT  + VL PY
Sbjct: 58  FMSKPLKPHLLAAKRILKYINGTIHYGVLFPY 89


>dbj|GAU42845.1| hypothetical protein TSUD_387380 [Trifolium subterraneum]
          Length = 1239

 Score =  104 bits (260), Expect(3) = 2e-39
 Identities = 54/107 (50%), Positives = 76/107 (71%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
            + +GV FP + ++    L  + DSDWCGD +DRRSTTGY+F F  A IS  SK Q ++AL
Sbjct: 1063 MEFGVLFPNNISNSVNRLEGFSDSDWCGDHVDRRSTTGYIFKFLHAPISWCSKKQPVIAL 1122

Query: 393  SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            SSCEAE I  A AA Q   +ES+LK+++++  +P++LL+ NKSAI+L
Sbjct: 1123 SSCEAEYIACAFAACQGIGLESLLKDIQVELTEPIQLLVDNKSAINL 1169



 Score = 77.0 bits (188), Expect(3) = 2e-39
 Identities = 34/60 (56%), Positives = 44/60 (73%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HGRSKH+ T+FHF+R QV NG I + HC T +Q ADILTK ++ D+F+KLR  +GV   E
Sbjct: 1176 HGRSKHIETRFHFIREQVNNGRIILNHCPTEVQEADILTKGLKHDRFIKLRSKIGVTTLE 1235



 Score = 30.0 bits (66), Expect(3) = 2e-39
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQIWSVL 554
            F+  P+ SH     +ILRYV+GT  + VL
Sbjct: 1040 FVESPKQSHMVAVKRILRYVQGTMEFGVL 1068


>dbj|GAU33377.1| hypothetical protein TSUD_365030 [Trifolium subterraneum]
          Length = 1208

 Score =  102 bits (255), Expect(3) = 3e-39
 Identities = 54/107 (50%), Positives = 72/107 (67%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
            + YGV FP    S   EL  + D+D CGD +DRRST+GY+F FQ A +S  SK Q ++AL
Sbjct: 1033 IHYGVLFPYSRDSSKLELNGFSDADRCGDKVDRRSTSGYVFKFQNAPVSWCSKKQSVIAL 1092

Query: 393  SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            SSCEAE + G++AA Q  W++S+L E+KI     + L I NKSAI+L
Sbjct: 1093 SSCEAEYVAGSLAACQANWLQSLLSEMKITDNITVMLKIDNKSAINL 1139



 Score = 79.3 bits (194), Expect(3) = 3e-39
 Identities = 34/63 (53%), Positives = 50/63 (79%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HG+SKH+ T+FHFLR+QV  G + + +C T  Q ADILTKAV+ DQF+KLR ++G+V F+
Sbjct: 1146 HGKSKHIETRFHFLRDQVYKGKLSLEYCSTNYQQADILTKAVKRDQFLKLRREIGIVSFD 1205

Query: 70   TMS 62
            +++
Sbjct: 1206 SLN 1208



 Score = 28.9 bits (63), Expect(3) = 3e-39
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQIWSVL-PY 548
            FMSK   SH     +ILRY+ GT  + VL PY
Sbjct: 1010 FMSKSLKSHLLAAKRILRYINGTIHYGVLFPY 1041


>dbj|GAU39052.1| hypothetical protein TSUD_396570 [Trifolium subterraneum]
          Length = 1309

 Score =  106 bits (265), Expect(3) = 4e-39
 Identities = 55/105 (52%), Positives = 71/105 (67%)
 Frame = -3

Query: 567  YGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVALSS 388
            +G+ FP +      EL  + DSDWCGD  DRRS +GY F F+ + IS  S+ Q +VALSS
Sbjct: 1136 FGLVFPTNNKESKIELEGFSDSDWCGDKDDRRSKSGYWFRFKNSPISWSSRKQSIVALSS 1195

Query: 387  CEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            C+AE +  A AA Q  W+ES+L ELKI + KP+KL + NKSAISL
Sbjct: 1196 CDAEYVAAAQAACQAVWLESLLDELKIKYVKPVKLNVDNKSAISL 1240



 Score = 72.8 bits (177), Expect(3) = 4e-39
 Identities = 32/63 (50%), Positives = 46/63 (73%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HGRSKH+ TK+HFLR+QV    + V +C+T +Q+ADILTK +R D+F +LR  LG+   E
Sbjct: 1247 HGRSKHIETKYHFLRDQVSKEKLTVEYCKTDVQIADILTKPLRADRFKELRKMLGITQME 1306

Query: 70   TMS 62
             ++
Sbjct: 1307 KLN 1309



 Score = 31.2 bits (69), Expect(3) = 4e-39
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQ 569
            FMS P+ SH     +ILRY+KGT+
Sbjct: 1111 FMSNPKASHMVAAKRILRYLKGTK 1134


>dbj|GAU22332.1| hypothetical protein TSUD_106600 [Trifolium subterraneum]
          Length = 1171

 Score =  107 bits (267), Expect(3) = 4e-39
 Identities = 55/107 (51%), Positives = 73/107 (68%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
            + YGV FP    S   EL  + D+DWCGD +DRRST+GY+F FQ A +S  SK Q ++AL
Sbjct: 996  IHYGVLFPYSRDSSKLELNGFSDADWCGDKVDRRSTSGYVFKFQSAPVSWCSKKQSVIAL 1055

Query: 393  SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            SSCEAE + G++AA Q  W++S+L E+KI     + L I NKSAI+L
Sbjct: 1056 SSCEAEYVAGSLAACQANWMQSLLNEMKIIDNITIMLKIDNKSAINL 1102



 Score = 73.9 bits (180), Expect(3) = 4e-39
 Identities = 32/63 (50%), Positives = 49/63 (77%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HG+SKH+ T+FHFLR+QV  G + + +C T  Q ADILTK+V+ DQF+KLR ++ +V F+
Sbjct: 1109 HGKSKHIETRFHFLRDQVNKGKLSLEYCSTNDQQADILTKSVKRDQFLKLRREMRIVRFD 1168

Query: 70   TMS 62
            +++
Sbjct: 1169 SLN 1171



 Score = 29.3 bits (64), Expect(3) = 4e-39
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQIWSVL-PY 548
            FMSKP  SH     +ILRY+  T  + VL PY
Sbjct: 973  FMSKPLKSHFLAAKRILRYINDTIHYGVLFPY 1004


>dbj|GAU46965.1| hypothetical protein TSUD_143070 [Trifolium subterraneum]
          Length = 1119

 Score =  106 bits (264), Expect(3) = 4e-39
 Identities = 54/107 (50%), Positives = 73/107 (68%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVAL 394
            + YGV +P    S   EL  + D+DWCGD +DRRST+GY+F FQ A +S  SK Q ++AL
Sbjct: 944  IHYGVLYPYARDSSKLELNGFSDADWCGDKVDRRSTSGYVFKFQNAPVSWCSKKQSVIAL 1003

Query: 393  SSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            SSCEAE + G++AA Q  W++S+L E+KI     + L I NKSAI+L
Sbjct: 1004 SSCEAEYVAGSLAACQANWLQSLLSEMKITNNITVMLKIDNKSAINL 1050



 Score = 74.3 bits (181), Expect(3) = 4e-39
 Identities = 32/63 (50%), Positives = 49/63 (77%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HG+SKH+ T+FHFLR+QV  G + + +C T  Q ADILTKA++ DQF+KLR ++ +V F+
Sbjct: 1057 HGKSKHIETRFHFLRDQVNKGKLSLKYCSTNDQQADILTKAMKRDQFLKLRREMEIVSFD 1116

Query: 70   TMS 62
            +++
Sbjct: 1117 SLN 1119



 Score = 30.0 bits (66), Expect(3) = 4e-39
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQIWSVL-PY 548
            FMS P  SH     +ILRY+ GT  + VL PY
Sbjct: 921  FMSNPLKSHLLAAKRILRYINGTIHYGVLYPY 952


>dbj|GAU33196.1| hypothetical protein TSUD_206550 [Trifolium subterraneum]
          Length = 1084

 Score =  108 bits (271), Expect(3) = 5e-39
 Identities = 57/105 (54%), Positives = 70/105 (66%)
 Frame = -3

Query: 567  YGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVALSS 388
            +G+ FP        EL  + DSDWCGD  DRRST+GY F F+ + IS  S+ Q  VALSS
Sbjct: 911  FGLAFPTSNKESKIELEGFSDSDWCGDKEDRRSTSGYWFRFKNSPISRSSRKQSTVALSS 970

Query: 387  CEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            CEAE +  A AA Q  W+ES+L ELKI + KP+KL + NKSAISL
Sbjct: 971  CEAEYVAAAQAACQAVWLESLLDELKIKYVKPVKLNVDNKSAISL 1015



 Score = 71.2 bits (173), Expect(3) = 5e-39
 Identities = 31/63 (49%), Positives = 45/63 (71%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HGRSKH+ TK+HFLR QV    + V +C+T +Q+ADILTK ++ D+F +LR  LG+   E
Sbjct: 1022 HGRSKHIETKYHFLREQVSKEKLTVEYCKTDVQIADILTKPLKADRFKELRKMLGITQME 1081

Query: 70   TMS 62
             ++
Sbjct: 1082 KLN 1084



 Score = 30.0 bits (66), Expect(3) = 5e-39
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -2

Query: 640 FMSKPRMSHNQETTKILRYVKGTQ 569
           FMS P+ SH     +ILRY+K TQ
Sbjct: 886 FMSNPKASHMVAAKRILRYLKDTQ 909


>gb|KYP66838.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1317

 Score =  103 bits (258), Expect(3) = 2e-38
 Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDG-ELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVA 397
            L YG+ F       DG  L+ Y DSDWCGD++DRRST G +F+F G+ IS  SK Q +V 
Sbjct: 1145 LGYGIMFSHQTKEDDGLRLVAYSDSDWCGDLVDRRSTMGQVFLFSGSPISWSSKKQTVVV 1204

Query: 396  LSSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            LS+CEAE I    AA Q  W+ S+L ELK+  +  ++LL+ +KSAI L
Sbjct: 1205 LSTCEAEYIAACSAACQALWLSSLLSELKVSVDSGVELLVDSKSAIDL 1252



 Score = 75.5 bits (184), Expect(3) = 2e-38
 Identities = 32/56 (57%), Positives = 47/56 (83%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGV 83
            HGRSKH+ TK+HFLR+QV  G I++ HCRT +Q+ADI+TK+++ ++F +LR+ LGV
Sbjct: 1259 HGRSKHIDTKYHFLRDQVSKGRIKLKHCRTEVQLADIMTKSLKIERFRELRESLGV 1314



 Score = 28.9 bits (63), Expect(3) = 2e-38
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQIWSVL 554
            FM+ PR  H     +ILRY+KGT  + ++
Sbjct: 1122 FMNDPRQPHLVAAKRILRYLKGTLGYGIM 1150


>dbj|GAU50842.1| hypothetical protein TSUD_232190 [Trifolium subterraneum]
          Length = 1078

 Score =  108 bits (271), Expect(3) = 2e-38
 Identities = 56/105 (53%), Positives = 71/105 (67%)
 Frame = -3

Query: 567  YGVCFPIDAASCDGELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVALSS 388
            +G+ FP        EL  + DSDWCGD  DRRST+GY F F+ + IS  S+ Q +VALSS
Sbjct: 905  FGLAFPTSNKESKIELEGFSDSDWCGDKEDRRSTSGYWFRFKNSPISRSSRKQSIVALSS 964

Query: 387  CEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            CEA+ +  A AA Q  W+ES+L ELKI + KP+KL + NKSAISL
Sbjct: 965  CEAQYVAAAQAACQAVWLESLLDELKIKYVKPVKLNVDNKSAISL 1009



 Score = 67.8 bits (164), Expect(3) = 2e-38
 Identities = 30/63 (47%), Positives = 44/63 (69%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVVVFE 71
            HGRSKH+  K+HFLR+QV    + V +C+T +Q+A ILTK +R D+F +LR  LG+   E
Sbjct: 1016 HGRSKHIEIKYHFLRDQVSKEKLTVEYCKTDVQIAHILTKPLRADRFKELRKMLGITQME 1075

Query: 70   TMS 62
             ++
Sbjct: 1076 KLN 1078



 Score = 31.6 bits (70), Expect(3) = 2e-38
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -2

Query: 640 FMSKPRMSHNQETTKILRYVKGTQ 569
           FMS P+ SH   + +ILRY+KGT+
Sbjct: 880 FMSNPKASHMVASKRILRYLKGTR 903


>gb|KYP68287.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1340

 Score =  103 bits (257), Expect(3) = 2e-38
 Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDG-ELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVA 397
            L YG+ FP      D   L+ Y DSDWCGD++DRRST G +F+  G+ IS  SK Q +VA
Sbjct: 1168 LSYGILFPHHTKGDDSLHLVAYSDSDWCGDLVDRRSTMGQVFLLSGSPISWNSKKQTVVA 1227

Query: 396  LSSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            LS+CEAE I    AA Q  W+ S+LKELK+   + + LL+ +KSAI L
Sbjct: 1228 LSTCEAEYIAACAAACQALWISSLLKELKMFTGEAVDLLVDSKSAIDL 1275



 Score = 72.8 bits (177), Expect(3) = 2e-38
 Identities = 32/57 (56%), Positives = 46/57 (80%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVV 80
            HGRSKH+ TKFHFLR+QV  G I + HCR+  Q+ADI+TK++++++F +LR+ L VV
Sbjct: 1282 HGRSKHIDTKFHFLRDQVSKGRIRLQHCRSEKQLADIMTKSMKSERFKELREFLNVV 1338



 Score = 31.6 bits (70), Expect(3) = 2e-38
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQIWSVL 554
            FMS PR SH     +I+RY++GT  + +L
Sbjct: 1145 FMSDPRQSHLVAAKRIMRYLRGTLSYGIL 1173


>gb|KYP31826.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1340

 Score =  103 bits (257), Expect(3) = 2e-38
 Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDG-ELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVA 397
            L YG+ FP      D   L+ Y DSDWCGD++DRRST G +F+  G+ IS  SK Q +VA
Sbjct: 1168 LSYGILFPHHTKGDDSLHLVAYSDSDWCGDLVDRRSTMGQVFLLSGSPISWNSKKQTVVA 1227

Query: 396  LSSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            LS+CEAE I    AA Q  W+ S+LKELK+   + + LL+ +KSAI L
Sbjct: 1228 LSTCEAEYIAACAAACQALWISSLLKELKMFTGEAVDLLVDSKSAIDL 1275



 Score = 72.8 bits (177), Expect(3) = 2e-38
 Identities = 32/57 (56%), Positives = 46/57 (80%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVV 80
            HGRSKH+ TKFHFLR+QV  G I + HCR+  Q+ADI+TK++++++F +LR+ L VV
Sbjct: 1282 HGRSKHIDTKFHFLRDQVSKGRIRLQHCRSEKQLADIMTKSMKSERFKELREFLNVV 1338



 Score = 31.6 bits (70), Expect(3) = 2e-38
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQIWSVL 554
            FMS PR SH     +I+RY++GT  + +L
Sbjct: 1145 FMSDPRQSHLVAAKRIMRYLRGTLSYGIL 1173


>gb|KYP61818.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
 gb|KYP63036.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1314

 Score =  103 bits (257), Expect(3) = 2e-38
 Identities = 54/108 (50%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
 Frame = -3

Query: 573  LRYGVCFPIDAASCDG-ELLCYLDSDWCGDVMDRRSTTGYLFIFQGAQISCGSKTQQLVA 397
            L YG+ FP      D   L+ Y DSDWCGD++DRRST G +F+  G+ IS  SK Q +VA
Sbjct: 1142 LSYGILFPHHTKGDDSLHLVAYSDSDWCGDLVDRRSTMGQVFLLSGSPISWNSKKQTVVA 1201

Query: 396  LSSCEAECIDGAVAAYQTTWVESVLKELKIDFEKPMKLLIANKSAISL 253
            LS+CEAE I    AA Q  W+ S+LKELK+   + + LL+ +KSAI L
Sbjct: 1202 LSTCEAEYIAACAAACQALWISSLLKELKMFTGEAVDLLVDSKSAIDL 1249



 Score = 72.8 bits (177), Expect(3) = 2e-38
 Identities = 32/57 (56%), Positives = 46/57 (80%)
 Frame = -2

Query: 250  HGRSKHVHTKFHFLRNQVQNGVIEVIHCRTPLQVADILTKAVRTDQFVKLRDDLGVV 80
            HGRSKH+ TKFHFLR+QV  G I + HCR+  Q+ADI+TK++++++F +LR+ L VV
Sbjct: 1256 HGRSKHIDTKFHFLRDQVSKGRIRLQHCRSEKQLADIMTKSMKSERFKELREFLNVV 1312



 Score = 31.6 bits (70), Expect(3) = 2e-38
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 640  FMSKPRMSHNQETTKILRYVKGTQIWSVL 554
            FMS PR SH     +I+RY++GT  + +L
Sbjct: 1119 FMSDPRQSHLVAAKRIMRYLRGTLSYGIL 1147