BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00022230
         (994 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX79184.1| ribonuclease H, partial [Trifolium pratense]           319   e-108
gb|PNX86072.1| ribonuclease H, partial [Trifolium pratense]           322   e-107
gb|PNX75251.1| ribonuclease H, partial [Trifolium pratense]           323   e-106
gb|PNX95881.1| ribonuclease H, partial [Trifolium pratense]           313   e-105
gb|PNY13536.1| ribonuclease H [Trifolium pratense]                    316   e-104
gb|PNY15776.1| ribonuclease H [Trifolium pratense]                    309   e-104
gb|PNY02920.1| ribonuclease H, partial [Trifolium pratense]           316   e-104
gb|PNY14273.1| ribonuclease H, partial [Trifolium pratense]           312   e-104
gb|PNX97265.1| ribonuclease H, partial [Trifolium pratense]           310   e-103
dbj|GAU31728.1| hypothetical protein TSUD_215290 [Trifolium subt...   307   e-103
dbj|GAU34270.1| hypothetical protein TSUD_321160 [Trifolium subt...   313   e-102
gb|PNY12420.1| ribonuclease H [Trifolium pratense]                    305   e-101
dbj|GAU43502.1| hypothetical protein TSUD_398950 [Trifolium subt...   307   e-101
gb|PNY06537.1| ribonuclease H, partial [Trifolium pratense]           298   e-101
gb|PNX91173.1| ribonuclease H, partial [Trifolium pratense]           309   e-100
dbj|GAU45807.1| hypothetical protein TSUD_87100 [Trifolium subte...   298   e-100
gb|PNY03121.1| ribonuclease H, partial [Trifolium pratense]           320   2e-98
gb|PNY15946.1| ribonuclease H, partial [Trifolium pratense]           302   5e-98
dbj|GAU48590.1| hypothetical protein TSUD_405800 [Trifolium subt...   299   3e-97
gb|PNY01940.1| ribonuclease H [Trifolium pratense]                    280   2e-92

>gb|PNX79184.1| ribonuclease H, partial [Trifolium pratense]
          Length = 623

 Score =  319 bits (817), Expect(2) = e-108
 Identities = 148/248 (59%), Positives = 188/248 (75%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R  FFRPQRGIRQ D +SPY+FVLCMDK SHIIL  VEK NWK IK  R GP +SHLMFA
Sbjct: 328  RTDFFRPQRGIRQGDPISPYLFVLCMDKLSHIILHAVEKDNWKGIKMGRRGPMISHLMFA 387

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDLLLFG+A+  Q+ C+  +L+ FC MSGQ+VS  KTS+LFS+ V  N++  ++  SG+ 
Sbjct: 388  DDLLLFGEASEPQMRCVMDSLQRFCTMSGQEVSHNKTSVLFSRNVERNLRNKLLNISGFN 447

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
            E S+ GKYLG+PL GR P+RSD+ YL+D +  KLS WKANHLSFAG+VTL K+VIEA+P+
Sbjct: 448  ETSNFGKYLGVPLHGRAPRRSDFQYLLDQVSAKLSMWKANHLSFAGRVTLAKSVIEAVPI 507

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            YPMM+S+IPK+C  EI ++Q  FIWGDT ++RR+HA+ W  +T  K +GGL +  L   N
Sbjct: 508  YPMMSSLIPKACLEEIHKMQRRFIWGDTDQKRRFHAISWDRITVPKWMGGLGLRKLDVMN 567

Query: 967  SACFMKLG 990
             AC +KLG
Sbjct: 568  KACLLKLG 575



 Score =  102 bits (255), Expect(2) = e-108
 Identities = 47/80 (58%), Positives = 60/80 (75%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           F+PGR+I ENIVVA E+ HTM RM GRKG  AIKV LAK+YD+L WS+I+  L  +  P+
Sbjct: 246 FVPGRNIHENIVVAKEMAHTMHRMKGRKGAFAIKVDLAKAYDKLSWSFIWRTLVEINFPE 305

Query: 182 KLIDLIMACIMTVQTNVLWN 241
            LI++IM C+ +V TNV WN
Sbjct: 306 VLINVIMHCVTSVMTNVKWN 325


>gb|PNX86072.1| ribonuclease H, partial [Trifolium pratense]
          Length = 494

 Score =  322 bits (825), Expect(2) = e-107
 Identities = 152/248 (61%), Positives = 191/248 (77%)
 Frame = +1

Query: 247 RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
           R+ +FRPQRGIRQ D +SPY+FVLCMDK SH+IL EV +G W  IKA RNG  VSHLMFA
Sbjct: 94  RSEYFRPQRGIRQGDPISPYLFVLCMDKLSHLILHEVNRGKWCGIKAGRNGHMVSHLMFA 153

Query: 427 DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
           DDLLLFG+AT  Q+NC+  TL  FC +SGQ+VS EKTSI FSK V   +K  +V  SG++
Sbjct: 154 DDLLLFGEATELQMNCVIETLNKFCSLSGQEVSQEKTSIYFSKNVNKEMKNKLVRISGFK 213

Query: 607 EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
           E +SLG+YLG+PL+GR PKR+D+ YLVD ++ KL+GWKA  LSFAG+VTL K+V+EA+P+
Sbjct: 214 ETTSLGRYLGVPLLGRAPKRNDFQYLVDQVEAKLAGWKAKQLSFAGRVTLAKSVLEAVPI 273

Query: 787 YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
           YPMMT+ IPKSC  +IQ++Q +FIWGDT   +++HAV W  VTT K +GGL + NL   N
Sbjct: 274 YPMMTTKIPKSCLDDIQRIQRNFIWGDTESGKKFHAVSWEKVTTPKWMGGLGLRNLECMN 333

Query: 967 SACFMKLG 990
            AC  KLG
Sbjct: 334 QACLSKLG 341



 Score = 95.9 bits (237), Expect(2) = e-107
 Identities = 43/80 (53%), Positives = 60/80 (75%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           F+PGR I ENI+VA E+VH+M RM G+KG  AIKV L+K+YD+L W +I+ VL  + LP 
Sbjct: 12  FVPGRIIHENIIVAKEMVHSMHRMKGKKGAFAIKVDLSKAYDKLSWEFIWRVLCEISLPI 71

Query: 182 KLIDLIMACIMTVQTNVLWN 241
            L+++IM  + +V+TNV WN
Sbjct: 72  NLVNIIMHSVTSVETNVKWN 91


>gb|PNX75251.1| ribonuclease H, partial [Trifolium pratense]
          Length = 800

 Score =  323 bits (827), Expect(2) = e-106
 Identities = 150/248 (60%), Positives = 191/248 (77%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R+ +FRPQRGIRQ D +SPYIFVLCMDK SH+IL EV  G W+ IKA RNGP VSHLMFA
Sbjct: 537  RSEYFRPQRGIRQGDPISPYIFVLCMDKLSHLILHEVNIGKWRGIKAGRNGPMVSHLMFA 596

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDLLLFG+A   Q+ C+ +TL  FC +SGQ+VS EKTSI FSK     ++  ++  SG++
Sbjct: 597  DDLLLFGEAKEEQMQCVINTLNNFCNLSGQEVSQEKTSIYFSKNASREIRNKLLRISGFK 656

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
            E SSLG+YLG+PL+GR PKR+D+ YLVD ++ KLSGWKA  LSFAG+VTL K+V+EA+P+
Sbjct: 657  ETSSLGRYLGVPLLGRAPKRNDFQYLVDQVETKLSGWKAKQLSFAGRVTLAKSVLEAIPI 716

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            YPMMT+ IPKSC  +IQ++Q +FIWGD+   R++HAV W  VTT K +GGL + N+   N
Sbjct: 717  YPMMTTKIPKSCLNDIQRIQRNFIWGDSESGRKFHAVSWEKVTTPKWMGGLGLRNMEYMN 776

Query: 967  SACFMKLG 990
             AC +KLG
Sbjct: 777  QACLIKLG 784



 Score = 93.2 bits (230), Expect(2) = e-106
 Identities = 41/80 (51%), Positives = 57/80 (71%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           F+PGR I EN++VA E+ H+M RM GRKG  AIKV L+K+YD++ W  I+ VL    LP 
Sbjct: 455 FVPGRIIHENVIVAKEMAHSMHRMKGRKGAFAIKVDLSKAYDKISWECIWRVLCETSLPS 514

Query: 182 KLIDLIMACIMTVQTNVLWN 241
            L+++IM  + +V+TNV WN
Sbjct: 515 NLVNIIMLAVTSVETNVKWN 534


>gb|PNX95881.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1157

 Score =  313 bits (802), Expect(2) = e-105
 Identities = 145/248 (58%), Positives = 188/248 (75%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R  +FRPQRGIRQ D +SPY+FVLCMDK SHIIL+ VE+G WK IK  R+GP +SHLMFA
Sbjct: 599  RTEYFRPQRGIRQGDPISPYLFVLCMDKLSHIILQAVEEGKWKGIKVGRHGPMISHLMFA 658

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDLLLFG+AT  Q+ C+  +L  FC MSGQ+VS +KTS+LFS+ V  +++  ++  +G++
Sbjct: 659  DDLLLFGEATEIQMKCVIESLNIFCSMSGQEVSQDKTSVLFSRNVTRSLRSKLLNITGFK 718

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
            E S+ GKYLG+PL GR PKR D+ YL+D +  KLS WKA HLSFAG+VTL K+VIEA+P+
Sbjct: 719  ETSNFGKYLGVPLHGRAPKRMDFQYLLDQVSAKLSMWKATHLSFAGRVTLAKSVIEAVPI 778

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            YPMM++ IPK+C  +IQ++Q +FIWGDT  +RR+HAVGW  +T  K  GGL +  L   N
Sbjct: 779  YPMMSTAIPKACLDDIQRMQRNFIWGDTENKRRFHAVGWDKITAPKWKGGLGMRKLEVMN 838

Query: 967  SACFMKLG 990
             AC  KLG
Sbjct: 839  KACLCKLG 846



 Score = 97.8 bits (242), Expect(2) = e-105
 Identities = 45/80 (56%), Positives = 59/80 (73%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           F+PGR+I ENIVVA E+ HTM  M GRKG  AIKV L K+YD+L W +I+ VL+ + LP+
Sbjct: 517 FVPGRNIHENIVVAKEMAHTMHYMKGRKGAFAIKVDLTKAYDKLSWEFIWRVLREIDLPE 576

Query: 182 KLIDLIMACIMTVQTNVLWN 241
            LI++IM  + +V TNV WN
Sbjct: 577 TLINVIMHSVTSVMTNVKWN 596


>gb|PNY13536.1| ribonuclease H [Trifolium pratense]
          Length = 987

 Score =  316 bits (810), Expect(2) = e-104
 Identities = 147/247 (59%), Positives = 189/247 (76%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R  +F PQRGIRQ D +SPY+FVLCMDK SH+I + V+ G WK ++A RNGP +SHLMFA
Sbjct: 594  RADYFHPQRGIRQGDPISPYLFVLCMDKLSHLISQGVQDGEWKPMRAGRNGPLISHLMFA 653

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDL+LF +A M QI+ +   +  FC+MSGQ++S EKTSI+FS+ V ++V+ ++V RSG+ 
Sbjct: 654  DDLILFAEAKMDQIDVVLKIVGQFCQMSGQQISHEKTSIMFSRNVSLHVREALVRRSGFN 713

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
            E  SLGKYLG+PL+GR PKRSDY YL++ +KNKLS WKA  LSFAG+VTL KAVIEA+P+
Sbjct: 714  EALSLGKYLGVPLVGRAPKRSDYNYLINQVKNKLSNWKAKQLSFAGRVTLSKAVIEAIPI 773

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            YPMMT+ IPK+C  EIQ++Q  FIWG+    R+YHAV W +VT  K +GGL I  L+  N
Sbjct: 774  YPMMTTAIPKACLHEIQKIQRGFIWGEENGGRKYHAVNWENVTKPKVLGGLGIRRLVHMN 833

Query: 967  SACFMKL 987
             AC MKL
Sbjct: 834  KACLMKL 840



 Score = 92.4 bits (228), Expect(2) = e-104
 Identities = 42/82 (51%), Positives = 59/82 (71%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           FIPGRSI ENIVVA E+ H+M +M G+ G  AIKV L+K+YDRL W +I+ +L  VG P 
Sbjct: 512 FIPGRSIHENIVVAQEMAHSMTKMNGKVGYFAIKVDLSKAYDRLNWDFIYHILLEVGYPS 571

Query: 182 KLIDLIMACIMTVQTNVLWNEI 247
           + I+++   + +V+TNV WN +
Sbjct: 572 EWIEVVRMAVTSVRTNVKWNGV 593


>gb|PNY15776.1| ribonuclease H [Trifolium pratense]
          Length = 1171

 Score =  309 bits (791), Expect(2) = e-104
 Identities = 145/249 (58%), Positives = 192/249 (77%)
 Frame = +1

Query: 244  NRNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMF 423
            +R+ FF+P +GIRQ D +SPYIFVLCMDK SH+I E V+ GNW+ IKA R+GP +SHLMF
Sbjct: 625  SRSTFFQPGKGIRQGDPMSPYIFVLCMDKLSHLIAEAVDGGNWQPIKAGRSGPLISHLMF 684

Query: 424  ADDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGY 603
            ADDLLLFG+AT   +  + +TLE FCE+SGQ VS+EKTSI FSK VP +++  ++ +SG+
Sbjct: 685  ADDLLLFGKATELNMRTITNTLEKFCELSGQIVSIEKTSIFFSKNVPRDLRNMLLHQSGF 744

Query: 604  REVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALP 783
            RE +SLGKYLGIPL+GR P+ SD+ YLVD ++ KLSGWKA +LSFAG+VTL K+VI+A+P
Sbjct: 745  REANSLGKYLGIPLVGRAPRHSDFEYLVDKVRRKLSGWKATNLSFAGRVTLAKSVIQAVP 804

Query: 784  LYPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITF 963
            +Y MMT+ IPK    +I ++Q +FIWG    QR+ H + W ++   K+ GGL I +L T 
Sbjct: 805  IYSMMTTTIPKRVLMDIHRIQRNFIWGHDTGQRKMHMISWGTLLLPKECGGLSIRHLPTM 864

Query: 964  NSACFMKLG 990
            N+ACFMKLG
Sbjct: 865  NTACFMKLG 873



 Score = 99.4 bits (246), Expect(2) = e-104
 Identities = 48/80 (60%), Positives = 62/80 (77%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           FIP RSI ENIVVA E+VH+M +M GR G +A+KV LAK+YDRL+WS+I  VLK V +P 
Sbjct: 544 FIPTRSIHENIVVAQEMVHSMNKMRGRNGYVAVKVDLAKAYDRLRWSFISAVLKEVNIPA 603

Query: 182 KLIDLIMACIMTVQTNVLWN 241
            L  +IM CI +V+TNV+W+
Sbjct: 604 GLRRIIMQCITSVKTNVMWH 623


>gb|PNY02920.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1010

 Score =  316 bits (809), Expect(2) = e-104
 Identities = 148/248 (59%), Positives = 187/248 (75%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R  FF+PQRGIRQ D +SPY+FVLCMDK SH I+  V +G+W+ IKA R GP VSHLMFA
Sbjct: 453  RGDFFKPQRGIRQGDPISPYLFVLCMDKLSHFIMHAVNEGDWRGIKAGRTGPMVSHLMFA 512

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDLLLFG+AT  Q+ C+   L+ FC +SGQ+VS EKTS+LFSK V   ++  ++  SG++
Sbjct: 513  DDLLLFGEATEKQMKCVIDILQRFCIISGQEVSHEKTSVLFSKNVRRGMRDKLLHMSGFK 572

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
            E +  GKYLG+PLIGR PKR+DY YL+D + NKLS WKA  LSFAG+VTL K+V+EA+P+
Sbjct: 573  ETTDFGKYLGVPLIGRAPKRADYQYLIDQVSNKLSAWKARQLSFAGRVTLAKSVLEAVPI 632

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            YPMMTS IPKSC  +IQ++Q +FIWG+    R+YHAV WS +T  K +GGL I NL   N
Sbjct: 633  YPMMTSKIPKSCLNDIQRIQRNFIWGEYDNVRKYHAVKWSDLTKPKSMGGLGIRNLEIMN 692

Query: 967  SACFMKLG 990
             AC +KLG
Sbjct: 693  QACLLKLG 700



 Score = 92.4 bits (228), Expect(2) = e-104
 Identities = 41/80 (51%), Positives = 60/80 (75%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           F+PGR+I ENIVVA E++H+M+RM   KG  AIKV L+K+YD+L W +I+ +L  V LP+
Sbjct: 371 FVPGRNIHENIVVAKEMIHSMQRMQSAKGAFAIKVDLSKAYDKLSWEFIWRILCEVKLPE 430

Query: 182 KLIDLIMACIMTVQTNVLWN 241
           ++ ++IM  + +V TNV WN
Sbjct: 431 QMTNVIMHAVTSVDTNVKWN 450


>gb|PNY14273.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1048

 Score =  312 bits (800), Expect(2) = e-104
 Identities = 143/249 (57%), Positives = 188/249 (75%)
 Frame = +1

Query: 244  NRNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMF 423
            +R  +F PQRGIRQ D +SPY+FV+CMDK SH+I + V++  WK ++A RNGP +SHLMF
Sbjct: 625  DRAEYFHPQRGIRQGDPISPYLFVICMDKLSHLITQRVQEEAWKPMRAGRNGPFISHLMF 684

Query: 424  ADDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGY 603
            ADDL+LF +A  TQ+  +  TL  FC++SGQ+VS EKTSI+FS+ V   ++  +   SG+
Sbjct: 685  ADDLILFAEANTTQMRVVLDTLNQFCQLSGQQVSHEKTSIMFSRNVCSQMREELTGLSGF 744

Query: 604  REVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALP 783
             E SSLGKYLG+PL+GR PKRSDY YL++ +K KLS WKA  LSFAG+VTL K+VIEA+P
Sbjct: 745  NEASSLGKYLGVPLVGRAPKRSDYNYLINQVKTKLSAWKAKQLSFAGRVTLSKSVIEAIP 804

Query: 784  LYPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITF 963
            +YPMMT++IPK+C  E+Q++Q +FIWGD    R+YHAV W +VT  K +GGL I  L+  
Sbjct: 805  IYPMMTNLIPKACLNELQKIQRAFIWGDEDGNRKYHAVSWDNVTKPKALGGLGIRRLVHM 864

Query: 964  NSACFMKLG 990
            N AC MKLG
Sbjct: 865  NKACLMKLG 873



 Score = 95.5 bits (236), Expect(2) = e-104
 Identities = 44/80 (55%), Positives = 58/80 (72%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           FIPGRSI ENIVV  E+ H+MR+M G+ G  A+KV LAK+YDRL W +I+  L  VG P 
Sbjct: 544 FIPGRSIHENIVVVQEMAHSMRKMNGKVGYFAVKVDLAKAYDRLSWKFIYHTLMEVGYPM 603

Query: 182 KLIDLIMACIMTVQTNVLWN 241
           + ID++M  + +V+TNV WN
Sbjct: 604 EWIDVVMTSVTSVRTNVKWN 623


>gb|PNX97265.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1220

 Score =  310 bits (795), Expect(2) = e-103
 Identities = 142/248 (57%), Positives = 188/248 (75%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R  +F P+RGIRQ D +SPY+FV+CMDK SH+I + V +  W+ ++A RNGP +SHLMFA
Sbjct: 657  RAEYFHPRRGIRQGDPISPYLFVICMDKLSHLITQAVNERKWRPMRAGRNGPLISHLMFA 716

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDL+LF +A++ Q+  + + ++ FC++SGQKVS EKT+I+FSK V    K ++V  SG+ 
Sbjct: 717  DDLILFAEASVDQMTVVLNIIDQFCQLSGQKVSQEKTNIMFSKNVCPRTKETLVMMSGFI 776

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
            E +SLGKYLG+PL+GR PKRSDY YL++ +K KLS WKA HLSFAG+VTL KAVIEA+P+
Sbjct: 777  EATSLGKYLGVPLVGRAPKRSDYNYLINQVKTKLSAWKAKHLSFAGRVTLSKAVIEAIPI 836

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            YPMMT+ IPKSC  EIQ++Q +FIWGD    R+YHAV W +VT  K  GGL +  L+  N
Sbjct: 837  YPMMTTTIPKSCLNEIQKIQRAFIWGDDNGGRKYHAVSWENVTLPKAYGGLGMRRLVQMN 896

Query: 967  SACFMKLG 990
             AC MK+G
Sbjct: 897  KACLMKMG 904



 Score = 94.0 bits (232), Expect(2) = e-103
 Identities = 45/80 (56%), Positives = 59/80 (73%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           FIPGR+I ENIVVA E+ H+M +M G+ G  AIKV LAK+YDRL WS+I+  L  VG P 
Sbjct: 575 FIPGRNIHENIVVAQEMTHSMWKMKGKVGYFAIKVDLAKAYDRLHWSFIYHTLMEVGYPM 634

Query: 182 KLIDLIMACIMTVQTNVLWN 241
           + ID++M  + +V+TNV WN
Sbjct: 635 EWIDVVMTSVTSVRTNVKWN 654


>dbj|GAU31728.1| hypothetical protein TSUD_215290 [Trifolium subterraneum]
          Length = 614

 Score =  307 bits (786), Expect(2) = e-103
 Identities = 143/249 (57%), Positives = 191/249 (76%)
 Frame = +1

Query: 244 NRNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMF 423
           NR+ FF+P +GIRQ D +SPYIFVLCMDK SH+I E V+ GNW+ IKA R+GP +SHLMF
Sbjct: 252 NRSIFFQPGKGIRQGDPMSPYIFVLCMDKLSHLIAEAVDGGNWQPIKAGRSGPFISHLMF 311

Query: 424 ADDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGY 603
           ADDLLLFG+AT   +  +  TLE FCE+SGQ VS+EKTS+LFSK VP +++  ++ +SG+
Sbjct: 312 ADDLLLFGKATEVNMRTITDTLEKFCELSGQLVSIEKTSVLFSKNVPRDLRNVLLLQSGF 371

Query: 604 REVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALP 783
           RE +SLGKYLGIPL+GR P+ SD+ +LVD ++ KLSGWKA +LSFAG+VTL K+VI+A+P
Sbjct: 372 REANSLGKYLGIPLVGRAPRHSDFEHLVDKVRRKLSGWKATNLSFAGRVTLAKSVIQAVP 431

Query: 784 LYPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITF 963
           +Y MMT+ IPK    +I ++Q +FIWG    QR+ H + W ++   K+ GGL I +L T 
Sbjct: 432 IYSMMTTPIPKRVLMDIHRIQRNFIWGHDTSQRKMHMISWGTLLLPKESGGLAIRHLPTM 491

Query: 964 NSACFMKLG 990
           N+AC MK+G
Sbjct: 492 NTACLMKMG 500



 Score = 96.7 bits (239), Expect(2) = e-103
 Identities = 46/80 (57%), Positives = 62/80 (77%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           FIP RSI ENIVVA E+VH+M +M GR G +A+KV LAK+YDR++WS+I  VL+ V +P 
Sbjct: 171 FIPTRSIHENIVVAQEMVHSMSKMRGRNGYVAVKVDLAKAYDRIRWSFISAVLEEVNIPA 230

Query: 182 KLIDLIMACIMTVQTNVLWN 241
            L  +IM CI +V+TNV+W+
Sbjct: 231 GLRTIIMHCITSVKTNVMWH 250


>dbj|GAU34270.1| hypothetical protein TSUD_321160 [Trifolium subterraneum]
          Length = 1044

 Score =  313 bits (803), Expect(2) = e-102
 Identities = 144/248 (58%), Positives = 190/248 (76%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R  FFRPQRGIRQ D +SPY+FVLCMDK SHIIL+ VE+G W+ IKA RNGP +SHLMFA
Sbjct: 453  RTDFFRPQRGIRQGDPISPYLFVLCMDKLSHIILQAVEEGKWRGIKAGRNGPMISHLMFA 512

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDLLLFG A++ Q+ C+  +L  FC MSGQ+VS +KTS++FS+ V  +++  +++ +GY+
Sbjct: 513  DDLLLFGSASVDQMRCVVDSLNLFCSMSGQEVSQDKTSVMFSRNVERSLRTKLLSITGYK 572

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
            E S+ GKYLG+PL GR  K++D+ YL+D    KLS WKANHLSFAG+VTL K+VIEA+P 
Sbjct: 573  ETSNFGKYLGVPLHGRALKKADFQYLLDQASMKLSLWKANHLSFAGRVTLAKSVIEAIPN 632

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            YPMM+S+IPK+C  EIQ++Q +FIWGDT ++R+YHA+GW  +   K +GGL +  L   N
Sbjct: 633  YPMMSSLIPKACLDEIQRIQRNFIWGDTEQKRKYHAIGWEKIVVTKDMGGLGMRKLDIMN 692

Query: 967  SACFMKLG 990
              C  KLG
Sbjct: 693  KTCLCKLG 700



 Score = 89.4 bits (220), Expect(2) = e-102
 Identities = 41/81 (50%), Positives = 56/81 (69%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           F+PGR+I ENIV A E+ HTM  M GR G  A+KV L+K+YD+L W +I+ VL  +   +
Sbjct: 371 FVPGRNIHENIVAAKEMAHTMNYMKGRNGAFAVKVDLSKAYDKLSWEFIWKVLVEIKFSE 430

Query: 182 KLIDLIMACIMTVQTNVLWNE 244
            LI++IM  I +V TNV WN+
Sbjct: 431 PLINIIMHSISSVMTNVKWND 451


>gb|PNY12420.1| ribonuclease H [Trifolium pratense]
          Length = 1341

 Score =  305 bits (782), Expect(2) = e-101
 Identities = 143/247 (57%), Positives = 189/247 (76%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R+  F+PQRGIRQ D +SPY+FVLCMDK SH+IL+EVE+  WK IKA RNGP VSHLMFA
Sbjct: 599  RSELFKPQRGIRQGDPISPYLFVLCMDKRSHLILKEVEEKRWKGIKAGRNGPVVSHLMFA 658

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDLLLFG+A+  QI C+  T++ FC MSGQ++S +KTSILFS+ V   ++ +I+  SG++
Sbjct: 659  DDLLLFGEASEQQIKCIKDTMQKFCIMSGQEISQDKTSILFSRNVERCMRNTILNISGFK 718

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
            E +  GKYLG+PL GR PKR+D+ YL+D +  KLS WKA HLSFAG+VTL K+VIEA+P+
Sbjct: 719  ETNDFGKYLGVPLNGRAPKRADFQYLLDQVSMKLSNWKAKHLSFAGRVTLAKSVIEAVPV 778

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            Y  M++ +PKS   +I++LQ  FIWGDT ++RR+HA+GW  +T  K++GGL    L T N
Sbjct: 779  YTFMSAKVPKSVLDDIERLQRQFIWGDTDQKRRHHAIGWEKLTVPKRMGGLGFRKLETMN 838

Query: 967  SACFMKL 987
             AC +KL
Sbjct: 839  KACLLKL 845



 Score = 94.0 bits (232), Expect(2) = e-101
 Identities = 43/79 (54%), Positives = 56/79 (70%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           F+PGR+I ENIVVA E+ HTM  M GR+G  AIKV LAK+YD+L W +I+  L  +  PD
Sbjct: 517 FVPGRNIHENIVVAKEMAHTMHHMKGRRGAFAIKVDLAKAYDKLSWEFIWRTLVEINFPD 576

Query: 182 KLIDLIMACIMTVQTNVLW 238
            LI++IM  + +V TNV W
Sbjct: 577 ALINVIMHSVTSVMTNVKW 595


>dbj|GAU43502.1| hypothetical protein TSUD_398950 [Trifolium subterraneum]
          Length = 1962

 Score =  307 bits (786), Expect(2) = e-101
 Identities = 138/248 (55%), Positives = 190/248 (76%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R+ FFRPQRGIRQ D +SPY+FVLCMDK SH+I+ EV KG WK IKA RNGP VSHLMFA
Sbjct: 1226 RSEFFRPQRGIRQGDPISPYLFVLCMDKLSHLIIHEVNKGTWKGIKAGRNGPMVSHLMFA 1285

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDLLLFG+A   Q+ C+  TL  FC++SGQ+V+ EKT++ FS+ V   +K  ++   G++
Sbjct: 1286 DDLLLFGEAKEEQMQCVIDTLNNFCKLSGQEVNHEKTNVYFSRNVSREMKNKLIRIYGFK 1345

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
            E ++LG+YLG+PL+GR P ++D+ YLV+ ++ +L+GWKA  LSFAG+VTL K+V+EA+P+
Sbjct: 1346 EANNLGRYLGVPLLGRAPNKNDFQYLVEHVEVRLAGWKAKQLSFAGRVTLAKSVLEAIPI 1405

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            YPMMT+ IPK+C  +IQ++Q  FIWGDT  ++++HA+ W  VTT K +GGL +  L   N
Sbjct: 1406 YPMMTTKIPKTCLSDIQRIQRRFIWGDTENEKKFHALSWEKVTTPKWMGGLGLRKLEDMN 1465

Query: 967  SACFMKLG 990
             AC +K+G
Sbjct: 1466 LACLIKVG 1473



 Score = 90.9 bits (224), Expect(2) = e-101
 Identities = 41/80 (51%), Positives = 58/80 (72%)
 Frame = +2

Query: 2    FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
            F+PGR I ENI+VA E+ H+M +M GRKG  AIKV L+K+YD++ W  I+ VL  + LP 
Sbjct: 1144 FVPGRIIHENIIVAKEMAHSMHKMKGRKGAFAIKVDLSKAYDKISWECIWRVLCEIKLPL 1203

Query: 182  KLIDLIMACIMTVQTNVLWN 241
             L+++IM  + +V+TNV WN
Sbjct: 1204 NLVNIIMHAVTSVETNVKWN 1223


>gb|PNY06537.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1770

 Score =  298 bits (764), Expect(2) = e-101
 Identities = 138/249 (55%), Positives = 184/249 (73%)
 Frame = +1

Query: 244  NRNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMF 423
            NR  +F+P+RGIRQ D +SPYIFV+CMDK SH+I   V +G WK I+  R GP +SHLMF
Sbjct: 1137 NRAEYFKPRRGIRQGDPMSPYIFVICMDKLSHLISHSVAEGKWKGIQTGRTGPTISHLMF 1196

Query: 424  ADDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGY 603
            ADDLLLFGQA + Q+ C+   L+ FC +SGQ+VS+EKTSI+FSK V  +++  + + SG+
Sbjct: 1197 ADDLLLFGQANIVQLQCVMQILKEFCALSGQQVSIEKTSIMFSKNVKNDLRAELRSISGF 1256

Query: 604  REVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALP 783
            R  ++LGKYLG+PL G+ PKR D+ Y++  ++NKLS WKA +LSFAG+V+L K+V+EA+P
Sbjct: 1257 RVATNLGKYLGVPLTGKAPKRVDFQYVITQLQNKLSAWKAKNLSFAGRVSLAKSVMEAIP 1316

Query: 784  LYPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITF 963
            +YPMMT+ IP S  +E Q+LQ  FIWG+T E R+YHAV W   T  K +GGL +  L   
Sbjct: 1317 IYPMMTTSIPLSVVKEAQRLQRGFIWGETSEGRKYHAVSWEIATKPKSLGGLGLRRLDVM 1376

Query: 964  NSACFMKLG 990
            N AC MKLG
Sbjct: 1377 NRACLMKLG 1385



 Score = 98.6 bits (244), Expect(2) = e-101
 Identities = 45/80 (56%), Positives = 61/80 (76%)
 Frame = +2

Query: 2    FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
            F+PGRSI EN+VVA E+VH+M +MTG KG  AIKV LAK+YD L+W +I   L+ VGLP 
Sbjct: 1056 FVPGRSIHENVVVAAEIVHSMNKMTGNKGCFAIKVDLAKAYDMLRWDFIHSTLQEVGLPK 1115

Query: 182  KLIDLIMACIMTVQTNVLWN 241
             ++D++M  I +V+TNV W+
Sbjct: 1116 SMVDIMMYGITSVKTNVKWH 1135


>gb|PNX91173.1| ribonuclease H, partial [Trifolium pratense]
          Length = 390

 Score =  309 bits (792), Expect = e-100
 Identities = 143/248 (57%), Positives = 190/248 (76%)
 Frame = +1

Query: 247 RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
           R+ FF P+RGIRQ D LSPY+FVLCMDK SH+I +EV+  +W A++A R+GPH+SHLMFA
Sbjct: 6   RSTFFMPERGIRQGDPLSPYLFVLCMDKLSHLIAKEVDNKDWMAMRAGRDGPHISHLMFA 65

Query: 427 DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
           DDLLLFG+AT  Q+ C   TL+ F +MSGQ VS+EKT I FSK V    +R +  +SG +
Sbjct: 66  DDLLLFGKATEKQMECTMRTLDKFSKMSGQVVSLEKTMIYFSKNVDAQTRRRLARQSGCQ 125

Query: 607 EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
           E S++GKYLG+PLIG  P++ D+ +L+D ++NKLSGWKAN LSFAG+VTL K+VI+A+P+
Sbjct: 126 ETSNIGKYLGVPLIGDAPRKRDFQHLIDKVRNKLSGWKANQLSFAGRVTLSKSVIQAIPM 185

Query: 787 YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
           Y MMT++IPKSC  EIQ+LQ  F+WGD   +RR H V WS++T  K++GGL + ++   N
Sbjct: 186 YSMMTTLIPKSCLLEIQKLQRGFVWGDDENKRRLHTVRWSTLTIPKELGGLAVRDMSKMN 245

Query: 967 SACFMKLG 990
            AC MKLG
Sbjct: 246 LACIMKLG 253


>dbj|GAU45807.1| hypothetical protein TSUD_87100 [Trifolium subterraneum]
          Length = 862

 Score =  298 bits (763), Expect(2) = e-100
 Identities = 141/248 (56%), Positives = 182/248 (73%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R  +FRP RGIRQ D +SPY+FVLCMDK SH+I + V+ G W  I+A R GP +SHLMFA
Sbjct: 333  RTEYFRPYRGIRQGDPMSPYLFVLCMDKLSHMISQAVDGGKWVGIRAGRAGPIISHLMFA 392

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDLLL+G+AT   + C+   L+ FC +SGQKVS EKTSILFSK VP  VK  +   SG+R
Sbjct: 393  DDLLLYGKATAEHMQCVIKVLDDFCILSGQKVSQEKTSILFSKNVPQEVKTMLQNISGFR 452

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
              SSLGKYLG+PL GR PKR DY Y+++ +++KL+ WKA +LSFAG+V L K+V+EA+P+
Sbjct: 453  VTSSLGKYLGVPLTGRAPKRGDYQYIIEQLQSKLTAWKAKNLSFAGRVKLAKSVMEAMPI 512

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            YPMMT++IP S  +E+Q+LQ  FIWGD+I   ++HAV W  ++T K  GGL +  L   N
Sbjct: 513  YPMMTAIIPNSILQEVQRLQRDFIWGDSIHGIKHHAVRWELISTPKYRGGLGLRRLEIMN 572

Query: 967  SACFMKLG 990
             AC MKLG
Sbjct: 573  KACLMKLG 580



 Score = 96.3 bits (238), Expect(2) = e-100
 Identities = 46/80 (57%), Positives = 59/80 (73%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           F+PGRSI ENIVVA EL+H+  RMTG++G  AIKV LAK+YD L+W +I   L+ VG P 
Sbjct: 251 FVPGRSIHENIVVAQELLHSRNRMTGKRGYFAIKVDLAKAYDMLRWDFIHKTLQEVGFPP 310

Query: 182 KLIDLIMACIMTVQTNVLWN 241
            +I++IM  + TV TNV WN
Sbjct: 311 GMIEVIMHGVTTVTTNVKWN 330


>gb|PNY03121.1| ribonuclease H, partial [Trifolium pratense]
          Length = 952

 Score =  320 bits (821), Expect = 2e-98
 Identities = 150/247 (60%), Positives = 191/247 (77%)
 Frame = +1

Query: 247 RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
           R+  F+PQRG+RQ D +SPY+FVLCMDK SH+IL+EVE   WK IKA RNGP VSHLMFA
Sbjct: 231 RSELFKPQRGVRQGDPISPYLFVLCMDKLSHLILQEVEGKRWKGIKAGRNGPMVSHLMFA 290

Query: 427 DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
           DDLLLFG+A+  QI C+  TL+ FC MSGQ+VS +KTS+LFSK V  N+K  I++ SG++
Sbjct: 291 DDLLLFGEASEQQIWCVMDTLQKFCNMSGQEVSQDKTSVLFSKNVGRNMKSKILSMSGFK 350

Query: 607 EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
           E +  GKYLG+PL GR PKR+D+ YL+D +  KLS WKA HLSFAG+VTL K+VIEA+P+
Sbjct: 351 ETTDFGKYLGVPLNGRAPKRADFQYLLDQVNMKLSNWKAKHLSFAGRVTLAKSVIEAVPV 410

Query: 787 YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
           YP+M++ IPKSC  +I++LQ  FIWGDT ++RRYHAVGW  +T  K +GGL +  L   N
Sbjct: 411 YPLMSTKIPKSCLEDIERLQRQFIWGDTEQKRRYHAVGWEKLTVPKWMGGLGLRKLEIMN 470

Query: 967 SACFMKL 987
            AC +KL
Sbjct: 471 KACLLKL 477



 Score = 99.0 bits (245), Expect = 5e-19
 Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           F+PGR+I ENIVVA E+VHTM  M G++G  AIKV LAK+YD+L W +I+ +L  + LP 
Sbjct: 149 FVPGRNIHENIVVAKEMVHTMHHMKGKRGAFAIKVDLAKAYDKLSWEFIWKILVEINLPT 208

Query: 182 KLIDLIMACIMTVQTNVLWN--EIVILSLDRSVALDKRIHFLLIFLCSVWINFLIL 343
           +LI+++M  + +V TNV WN     +    R V     I   L  LC   ++ LIL
Sbjct: 209 ELINVVMHSVTSVMTNVKWNGARSELFKPQRGVRQGDPISPYLFVLCMDKLSHLIL 264


>gb|PNY15946.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1195

 Score =  302 bits (773), Expect(2) = 5e-98
 Identities = 140/248 (56%), Positives = 184/248 (74%)
 Frame = +1

Query: 247  RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
            R  +F PQRGIRQ D +SPY+FVLC+DK SH+I + V +G WK +KA R+GP +SHLMFA
Sbjct: 595  RAEYFAPQRGIRQGDPISPYLFVLCLDKLSHLISQAVHEGKWKPMKAGRSGPLISHLMFA 654

Query: 427  DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
            DDLLLF QA+  Q+  +   L+ FC MSGQ+VS EKTSI+FSK V  + +  +   SG+R
Sbjct: 655  DDLLLFAQASEDQMREVMHILDIFCSMSGQEVSQEKTSIMFSKNVQQHTRDQLANISGFR 714

Query: 607  EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
               S+GKYLG+PL+GR P++SDY YL+  +K+KLS WKA  LS AG++TL KA+IEA+P+
Sbjct: 715  VTQSMGKYLGVPLVGRAPRKSDYNYLLAQVKSKLSSWKAKQLSLAGRITLSKAIIEAIPI 774

Query: 787  YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
            YPMMT+ IPKSC +++Q++Q SFIWG+   +RRYHAV W ++T  K +GGL I  L   N
Sbjct: 775  YPMMTANIPKSCLQQLQKMQRSFIWGEAENERRYHAVSWDTITLPKSLGGLGIRRLHNMN 834

Query: 967  SACFMKLG 990
             AC MKLG
Sbjct: 835  KACLMKLG 842



 Score = 85.9 bits (211), Expect(2) = 5e-98
 Identities = 40/80 (50%), Positives = 57/80 (71%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           FIP RSI ENI+VA E+ H+M +M G+ G   IKV L+K+YD+L W +I  VL+  G P 
Sbjct: 513 FIPRRSIHENIIVAQEMAHSMCKMNGKVGFFVIKVDLSKAYDKLNWKFIHHVLQETGYPV 572

Query: 182 KLIDLIMACIMTVQTNVLWN 241
           + I+++MA + +V+TNV WN
Sbjct: 573 EWINVVMASVTSVRTNVKWN 592


>dbj|GAU48590.1| hypothetical protein TSUD_405800 [Trifolium subterraneum]
          Length = 818

 Score =  299 bits (766), Expect(2) = 3e-97
 Identities = 142/248 (57%), Positives = 185/248 (74%)
 Frame = +1

Query: 247 RNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMFA 426
           R+ FF+P+RGIRQ D +SPYIFVLCMDK +H+I E V+ G W  +KA + GP + HLMFA
Sbjct: 138 RSSFFQPERGIRQGDPMSPYIFVLCMDKLTHLIAEAVDSGKWHPLKAGKAGPAILHLMFA 197

Query: 427 DDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGYR 606
           DDLLLFG+AT   +  +  TL++F  +SGQ VS+EKTSILFSK    NVK +++ ++GYR
Sbjct: 198 DDLLLFGKATEENVKAITDTLDSFSSLSGQMVSLEKTSILFSKNTNQNVKSTLLRQTGYR 257

Query: 607 EVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALPL 786
           EV++ GKYLGIPL+GR P+R D+ YLVD +K KLSGWKA HLSFAG+VTL K+VI+A+P+
Sbjct: 258 EVATFGKYLGIPLVGRAPRRGDFDYLVDSVKAKLSGWKATHLSFAGRVTLAKSVIQAIPV 317

Query: 787 YPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITFN 966
           Y MMT  IP+S   +I ++Q +FIWG   +QRR H VGW+ +   K  GGL I +L   N
Sbjct: 318 YTMMTIPIPRSILIDIHRVQRNFIWGHEADQRRMHMVGWNKLLLPKSSGGLDIRSLPDMN 377

Query: 967 SACFMKLG 990
           SAC MK+G
Sbjct: 378 SACLMKMG 385



 Score = 86.3 bits (212), Expect(2) = 3e-97
 Identities = 40/69 (57%), Positives = 55/69 (79%)
 Frame = +2

Query: 35  VVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPDKLIDLIMACIM 214
           VVA E+VH+M +M G+ G  AIKV LAK+YDR++WS+I  VLK VGLP++L ++IM CI 
Sbjct: 67  VVAQEMVHSMHKMRGKTGFAAIKVDLAKAYDRIRWSFIAEVLKEVGLPEELQNIIMHCIT 126

Query: 215 TVQTNVLWN 241
           +V TNV+W+
Sbjct: 127 SVTTNVMWD 135


>gb|PNY01940.1| ribonuclease H [Trifolium pratense]
          Length = 556

 Score =  280 bits (716), Expect(2) = 2e-92
 Identities = 131/249 (52%), Positives = 182/249 (73%)
 Frame = +1

Query: 244 NRNPFFRPQRGIRQEDTLSPYIFVLCMDKFSHIILEEVEKGNWKAIKASRNGPHVSHLMF 423
           +R  +F+P+RGIRQ D +S Y+FVLCMDK SH++ EEV+KG W  +KA RNGP +SHLMF
Sbjct: 174 SRANYFKPRRGIRQGDPMSLYLFVLCMDKLSHLVTEEVDKGLWIPMKAGRNGPIISHLMF 233

Query: 424 ADDLLLFGQATMTQINCMCSTLETFCEMSGQKVSVEKTSILFSKGVPVNVKRSIVTRSGY 603
           ADDLLLFGQAT   +N + +TL  FC+MSGQ+V+  KTSI +SK V   ++  +   S +
Sbjct: 234 ADDLLLFGQATHNTMNSVMNTLTKFCQMSGQQVNHTKTSIFYSKNVSRPIRDDLNALSSF 293

Query: 604 REVSSLGKYLGIPLIGRTPKRSDYAYLVDMIKNKLSGWKANHLSFAGQVTLFKAVIEALP 783
            E SSLG YLG+P +GR P+ +D+ YL+D +KN+L+GWKA  LS AG++TL K+VI+A+ 
Sbjct: 294 TEASSLGNYLGVPALGRKPRSNDFYYLIDKVKNRLAGWKAKQLSMAGRITLAKSVIQAIL 353

Query: 784 LYPMMTSVIPKSCFREIQQLQ*SFIWGDTIEQRRYHAVGWSSVTTYKKIGGLRIHNLITF 963
           +YPMM+  +P+SC  +I+++Q SFIWGDT   ++ H +G +++   K +GGL I NL   
Sbjct: 354 IYPMMSMQVPRSCLDDIEKIQCSFIWGDTENVKKLHTIGRNTMILPKYLGGLDIRNLRIM 413

Query: 964 NSACFMKLG 990
           N AC MKLG
Sbjct: 414 NDACLMKLG 422



 Score = 89.0 bits (219), Expect(2) = 2e-92
 Identities = 41/80 (51%), Positives = 57/80 (71%)
 Frame = +2

Query: 2   FIPGRSILENIVVALELVHTMRRMTGRKGGLAIKVGLAKSYDRLKWSYIFLVLKNVGLPD 181
           F+PGR+I ENIV+A E++H+M +M G KG   IKV LAK+YDR+ W +I  VL  + L  
Sbjct: 93  FVPGRNIHENIVIAHEMLHSMAKMRGNKGFFVIKVDLAKAYDRIDWRFIENVLNEMSLLY 152

Query: 182 KLIDLIMACIMTVQTNVLWN 241
            +I  IM C+ +V+TNV+WN
Sbjct: 153 NMIRFIMECVTSVKTNVMWN 172