BLASTX nr result

ID: Astragalus23_contig00019426 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00019426
         (674 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_012570330.1| PREDICTED: RNA polymerase sigma factor sigF,...    59   2e-06
ref|XP_004497527.1| PREDICTED: RNA polymerase sigma factor sigF,...    59   2e-06
ref|XP_003590454.2| RNA polymerase sigma factor [Medicago trunca...    58   3e-06

>ref|XP_012570330.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Cicer arietinum]
          Length = 543

 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +3

Query: 573 EITADTAVESPDMTVAKQVMRRHVLNTLSILRPK 674
           EITADTA+ES DM+VAKQ+MRRHVLNTL  LRPK
Sbjct: 449 EITADTAIESTDMSVAKQLMRRHVLNTLKTLRPK 482


>ref|XP_004497527.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X1 [Cicer arietinum]
          Length = 576

 Score = 58.9 bits (141), Expect = 2e-06
 Identities = 28/34 (82%), Positives = 31/34 (91%)
 Frame = +3

Query: 573 EITADTAVESPDMTVAKQVMRRHVLNTLSILRPK 674
           EITADTA+ES DM+VAKQ+MRRHVLNTL  LRPK
Sbjct: 482 EITADTAIESTDMSVAKQLMRRHVLNTLKTLRPK 515


>ref|XP_003590454.2| RNA polymerase sigma factor [Medicago truncatula]
 gb|AES60705.2| RNA polymerase sigma factor [Medicago truncatula]
          Length = 561

 Score = 58.2 bits (139), Expect = 3e-06
 Identities = 27/34 (79%), Positives = 32/34 (94%)
 Frame = +3

Query: 573 EITADTAVESPDMTVAKQVMRRHVLNTLSILRPK 674
           EITAD A+ESP+M+VAKQ+MRRHVLN L+ILRPK
Sbjct: 467 EITADCAIESPNMSVAKQLMRRHVLNVLNILRPK 500


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