BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00019166
         (359 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX79967.1| RNA-binding protein, partial [Trifolium pratense]       59   5e-08
ref|XP_013466814.1| RNA recognition motif [Medicago truncatula] ...    59   2e-07

>gb|PNX79967.1| RNA-binding protein, partial [Trifolium pratense]
          Length = 217

 Score = 58.9 bits (141), Expect = 5e-08
 Identities = 46/101 (45%), Positives = 56/101 (55%), Gaps = 17/101 (16%)
 Frame = -2

Query: 256 EKKAVPVKCFDTPISEHPLTCA-EEVKDMEMFDAASAEKH--ETPATQKEK-EAVPVKCV 89
           + + VPVKCFDT ++E  LTCA EEVKD+EMFDAA AE    ETP+  K K +A    CV
Sbjct: 112 QSQTVPVKCFDTSLAEDKLTCAKEEVKDIEMFDAAPAESKVPETPSIGKAKNDASKTICV 171

Query: 88  -----DTPIAEHK---LTCAEEVK-----DMEMFKAASAEK 5
                D   AE +     C E V      D+E   A +AEK
Sbjct: 172 RNLSFDVERAEIENIFKDCGEVVDVRLHVDVEFATAEAAEK 212


>ref|XP_013466814.1| RNA recognition motif [Medicago truncatula]
 gb|KEH40855.1| RNA recognition motif [Medicago truncatula]
          Length = 668

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 7/63 (11%)
 Frame = -2

Query: 256 EKKAVPVKCFDTPISEHPLTCAEEVKDMEM----FDAASAEKH--ETPATQKEK-EAVPV 98
           + + +PVKCFDT ++E  L CA++VKD++M     DAASAE    ETPATQKEK +A   
Sbjct: 393 QSQTIPVKCFDTSLAEDKLACAKDVKDIQMSDADADAASAENKLPETPATQKEKNDASKT 452

Query: 97  KCV 89
            CV
Sbjct: 453 VCV 455