BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00018468
         (1297 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX81877.1| hypothetical protein L195_g037902, partial [Trifo...   263   e-125
gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]            259   e-121
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   267   e-121
dbj|GAU29997.1| hypothetical protein TSUD_160820 [Trifolium subt...   258   e-121
gb|KZV47100.1| retrovirus-related Pol polyprotein from transposo...   278   e-121
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   258   e-120
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   266   e-120
dbj|GAU31045.1| hypothetical protein TSUD_214810 [Trifolium subt...   248   e-120
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]   268   e-120
dbj|GAU44848.1| hypothetical protein TSUD_112220 [Trifolium subt...   253   e-120
gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]   257   e-120
dbj|GAU24969.1| hypothetical protein TSUD_312040 [Trifolium subt...   264   e-119
gb|KZV40714.1| retrovirus-related Pol polyprotein from transposo...   261   e-119
gb|PRQ21321.1| putative RNA-directed DNA polymerase [Rosa chinen...   269   e-118
dbj|GAU23220.1| hypothetical protein TSUD_172480 [Trifolium subt...   261   e-118
gb|KZV22085.1| retrovirus-related Pol polyprotein from transposo...   256   e-117
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   261   e-117
gb|PNY15642.1| copia-type polyprotein [Trifolium pratense]            258   e-116
gb|PNY15444.1| retrotransposon-related protein [Trifolium pratense]   268   e-116
gb|PRQ55986.1| putative RNA-directed DNA polymerase [Rosa chinen...   269   e-116

>gb|PNX81877.1| hypothetical protein L195_g037902, partial [Trifolium pratense]
          Length = 575

 Score =  263 bits (673), Expect(2) = e-125
 Identities = 128/229 (55%), Positives = 170/229 (74%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYS+I +Y  K GF++CP+EH   TLF K     +++I+SLYVDDL +TGN+  M  +FK
Sbjct: 232  WYSRIEAYFTKEGFERCPYEH---TLFVKQSETGNILIVSLYVDDLIFTGNDENMFKEFK 288

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
            +SM+ +F+MSDLGKM +FLGVEV QN +GI+I Q++Y  ++L RF ++ +N   N +A G
Sbjct: 289  KSMEKEFNMSDLGKMHYFLGVEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPG 348

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KL ++     VD+T +KQ+VG L+YL ATRPD+MY +S+ISRFM+ PTE H+ AVKRVL
Sbjct: 349  CKLIKDENGVKVDATMYKQVVGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVL 408

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RYL GT  LGI YK G  + L AY DSDYAGD +D KST+GYVFMLS+G
Sbjct: 409  RYLNGTINLGIMYKRGGNEKLEAYTDSDYAGDLDDRKSTSGYVFMLSAG 457



 Score =  215 bits (548), Expect(2) = e-125
 Identities = 100/154 (64%), Positives = 125/154 (81%), Gaps = 1/154 (0%)
 Frame = +1

Query: 103 ENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWKLVELPHGTKTIGVKW 282
           E IQ+  +F   SDP +++E VK + WR A+++E+ +IEKN+TW+L +LP G KTIG+KW
Sbjct: 62  EEIQNLVMFTVASDPTTFEEAVKSEKWRNAMNNEMEAIEKNNTWELTDLPTGAKTIGLKW 121

Query: 283 IYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTIRCIFAIAAQ-GWNVY 459
           I+KTK NE GE+EKYKA+LVAK Y+QQYG+DY+EVF  VARWDTIR + A+AAQ GWNVY
Sbjct: 122 IFKTKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQKGWNVY 181

Query: 460 QLDVNKAFLHGELNEVVFVEQPEGYEKKGSEKKV 561
           QLDV  AFLHGELNE VFV+QP+GY KKG E KV
Sbjct: 182 QLDVKSAFLHGELNEQVFVDQPQGYVKKGDELKV 215


>gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]
          Length = 1328

 Score =  259 bits (663), Expect(2) = e-121
 Identities = 130/230 (56%), Positives = 163/230 (70%), Gaps = 1/230 (0%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYSKI +Y     F+KC HEH   TLF K   E  ++I+SLYVDDL YTGN+  +I DFK
Sbjct: 972  WYSKIEAYFSNEKFEKCSHEH---TLFVKQVEEK-ILIVSLYVDDLIYTGNDDELIRDFK 1027

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
             SMK  F+M+DLGKM +FLGVEV QN +GIFI QQ+YA E+LNRF +   N +C+ +  G
Sbjct: 1028 SSMKRNFAMTDLGKMSYFLGVEVTQNDRGIFINQQKYAAEILNRFNMDSCNFVCSPIVPG 1087

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KL ++   KCVDST FKQ+VG L+YL ATRPD+ Y+V +I+R+M++PTE HL A KR+L
Sbjct: 1088 TKLFKDENGKCVDSTQFKQMVGCLMYLIATRPDLCYSVCLIARYMERPTEIHLAAAKRIL 1147

Query: 1151 RYLKGTTGLGIFYKFGQ-KQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RYLKGT   G+ Y  G     L  + DSDYAGD +D KST+GYVF L SG
Sbjct: 1148 RYLKGTISYGVLYDKGSLNMKLEGWTDSDYAGDSDDRKSTSGYVFKLGSG 1197



 Score =  207 bits (527), Expect(2) = e-121
 Identities = 101/171 (59%), Positives = 129/171 (75%), Gaps = 1/171 (0%)
 Frame = +1

Query: 31   KNPAHLDDFGMLGNLDGKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELS 210
            K P +L D+     + G+ EL++ E + + AVF N +DP ++ E VKH+ WRKA+D E+ 
Sbjct: 785  KRPGYLSDY-----VTGQ-ELEEEEQLHNLAVFCNNTDPTTFDEAVKHEVWRKAMDQEIE 838

Query: 211  SIEKNDTWKLVELPHGTKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVF 390
             IE NDTW+L ELP G+K IGVKWIYKTK NE G++EKYKA+LVAK Y+QQYGID+ EVF
Sbjct: 839  CIESNDTWELTELPSGSKKIGVKWIYKTKLNEKGKVEKYKARLVAKGYSQQYGIDFKEVF 898

Query: 391  VLVARWDTIRCIFAIAA-QGWNVYQLDVNKAFLHGELNEVVFVEQPEGYEK 540
              VARWDTIR + +IAA + W VYQLDV  AFLHGEL+E V+V+QP GY+K
Sbjct: 899  APVARWDTIRTVLSIAASESWTVYQLDVKSAFLHGELSEDVYVDQPLGYQK 949


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  267 bits (682), Expect(2) = e-121
 Identities = 128/229 (55%), Positives = 167/229 (72%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYS+I +Y +K GF++CPHEH   TLF K+     ++I+SLYVDDL +TGN+  M  +FK
Sbjct: 961  WYSRIEAYFIKEGFERCPHEH---TLFVKSSEGGKILIVSLYVDDLIFTGNDEYMFEEFK 1017

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
            +SMK +F MSDLG MR+FLGVEV QN  GI+I Q++YA E+L RF ++  N + N +  G
Sbjct: 1018 KSMKDEFDMSDLGMMRYFLGVEVVQNEAGIYICQKKYASEILERFGMEKANSVRNPIVPG 1077

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KL ++     VD+T +KQIVGSL+YL ATRPD+MY VS+ISRFM  PTE H+ A KRVL
Sbjct: 1078 IKLMKDEGGVKVDATMYKQIVGSLMYLTATRPDLMYVVSLISRFMSSPTELHMQAAKRVL 1137

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RYLKGT  LG+ Y+   ++ L A+ DSDYAGD +D KST+GY+FM S G
Sbjct: 1138 RYLKGTINLGVLYRRNGEEKLEAFTDSDYAGDVDDRKSTSGYIFMFSDG 1186



 Score =  199 bits (507), Expect(2) = e-121
 Identities = 94/158 (59%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
 Frame = +1

Query: 91   LQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWKLVELPHGTKTI 270
            L + E   +  +F + +DP +++E  K   W+ A+D E+ +IE+N TW+L  LP G KTI
Sbjct: 787  LSEEEETNNIVMFTSVTDPTTFEEAFKSAKWKAAMDQEIEAIERNHTWELTILPAGAKTI 846

Query: 271  GVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTIRCIFAIAAQ-G 447
            GVKWI+KTK NE GE+EK KA+LVAK YAQQYGIDY+EVF  VARWDTIR + A+AAQ G
Sbjct: 847  GVKWIFKTKLNENGEVEKCKARLVAKGYAQQYGIDYTEVFAPVARWDTIRMVIALAAQKG 906

Query: 448  WNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEKKV 561
            W VYQLDV  AFLHGEL E VF++QP+GY K+G E KV
Sbjct: 907  WKVYQLDVKSAFLHGELTEAVFIDQPQGYVKEGDELKV 944


>dbj|GAU29997.1| hypothetical protein TSUD_160820 [Trifolium subterraneum]
          Length = 1245

 Score =  258 bits (659), Expect(2) = e-121
 Identities = 126/228 (55%), Positives = 170/228 (74%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYSKI SY  +  F+KCPHEH   TLF K   E+ ++I+SLYVDDL YTGN++ +  DFK
Sbjct: 890  WYSKIESYFNQEKFQKCPHEH---TLFIKHV-EDKILIVSLYVDDLIYTGNDSKLFEDFK 945

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
             SM+ +F+M+DLGKMR+FLGVEV Q+  GI I+QQ+YA E+L RF ++  N + + +  G
Sbjct: 946  HSMQGKFAMTDLGKMRYFLGVEVTQSEHGIMISQQKYAKEILARFGMEACNSVGSPIVPG 1005

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
            +KLT++   K VD+T +KQ+VG L+YL ATRPD+ Y+V +I+R+MDKPTE H  A KR+L
Sbjct: 1006 NKLTKDENGKLVDATKYKQMVGCLMYLLATRPDLAYSVCLIARYMDKPTEIHSAAAKRIL 1065

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSS 1294
            RYLKG+  LG+ YK G+ Q+L+ + DSDYAGD +D KST+GYVF   S
Sbjct: 1066 RYLKGSISLGVLYKRGKNQELVGWTDSDYAGDSDDRKSTSGYVFKFGS 1113



 Score =  208 bits (529), Expect(2) = e-121
 Identities = 100/176 (56%), Positives = 128/176 (72%), Gaps = 1/176 (0%)
 Frame = +1

Query: 31   KNPAHLDDFGMLGNLDGKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELS 210
            + P +LDD+         +E  +   +Q+ A+    +DPI+Y E VK + W++A+D E+ 
Sbjct: 703  RKPGYLDDY------TSGEEFDEAAQMQNLAMANINNDPITYYEAVKCEEWKQAMDQEIE 756

Query: 211  SIEKNDTWKLVELPHGTKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVF 390
            +IE+NDTW+LV LPHG K IGVKWIYKTKYNE GEIEKYKA+LVAK Y+QQYGIDY+EVF
Sbjct: 757  AIERNDTWELVSLPHGAKRIGVKWIYKTKYNEKGEIEKYKARLVAKGYSQQYGIDYNEVF 816

Query: 391  VLVARWDTIRCIFAIAA-QGWNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEK 555
              VARWDTIR + ++AA Q W VYQLDV  AFLHGEL E V++ QP GY+K   +K
Sbjct: 817  APVARWDTIRMVLSLAAYQNWFVYQLDVKSAFLHGELTENVYIAQPLGYQKGSIDK 872


>gb|KZV47100.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Dorcoceras hygrometricum]
          Length = 553

 Score =  278 bits (711), Expect(2) = e-121
 Identities = 136/228 (59%), Positives = 177/228 (77%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYS+I +Y +K GFKKCP+EH   TLFTK +++  ++I+ LYVDDL +TGN+ +M  DFK
Sbjct: 192  WYSRIETYFLKTGFKKCPYEH---TLFTKFEDDGKMLIVCLYVDDLSFTGNDVSMFEDFK 248

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
            ESM ++F MSDLGKM +FLG+EV Q+  GIFI+Q++Y  E+L RF ++  N     V  G
Sbjct: 249  ESMMVEFDMSDLGKMHYFLGIEVVQSTGGIFISQKKYIQELLCRFHMEKCNAANTPVELG 308

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KLTR  E K +DST FKQIVGSL+YL ATRPDIMY+VS+ISR+M+ PTE HL+A KR+L
Sbjct: 309  LKLTRYCEGKKIDSTVFKQIVGSLMYLTATRPDIMYSVSLISRYMENPTEVHLLAAKRIL 368

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSS 1294
            RYL+GT  L ++YK G+K DL+A+CDSDYAGD +D KST+GYVF+L S
Sbjct: 369  RYLQGTQKLSLYYKKGEKADLIAFCDSDYAGDQDDRKSTSGYVFLLGS 416



 Score =  187 bits (474), Expect(2) = e-121
 Identities = 91/178 (51%), Positives = 126/178 (70%), Gaps = 1/178 (0%)
 Frame = +1

Query: 31  KNPAHLDDFGMLGNLDGKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELS 210
           + PA ++D+ + G     D L        FA+F +  DP+++++ ++   WR A+D+E++
Sbjct: 5   RRPAWMEDYEVQGFEHNDDPLVH------FALFSD-CDPVTFEDAMQETKWRNAMDAEIA 57

Query: 211 SIEKNDTWKLVELPHGTKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVF 390
           +IEKN+TW L ELP G KTIGVKWIYKTK  E GE++K+KA+LVAK Y Q+YG+DY EVF
Sbjct: 58  AIEKNNTWTLTELPQGQKTIGVKWIYKTKMKENGEVDKFKARLVAKGYKQEYGVDYKEVF 117

Query: 391 VLVARWDTIRCIFAIAAQ-GWNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEKKV 561
             VAR DTIR + A+AAQ  W ++QLDV  AFLHG+L E V+++QP GY K G+E KV
Sbjct: 118 APVARHDTIRLVIALAAQYSWPIFQLDVKSAFLHGDLEEQVYIDQPPGYIKIGNEHKV 175


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  258 bits (658), Expect(2) = e-120
 Identities = 128/252 (50%), Positives = 175/252 (69%)
 Frame = +2

Query: 539  RKEVKKKYHQXXXXXXXXXXXXXXWYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDV 718
            +KE K K ++              WYSKI SY  +  F+KCP+EH   TLF K +N+  +
Sbjct: 943  QKEEKGKVYKLKKALYGLKQAPRAWYSKIESYFGQEKFEKCPYEH---TLFVK-RNKEKL 998

Query: 719  IIISLYVDDLFYTGNNAAMISDFKESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQR 898
            +I+SLYVDDL YTGN+  M ++FK+SM+ +F+M+DLGKMR FLGVEV Q   GIFI QQ+
Sbjct: 999  LIVSLYVDDLIYTGNDVEMFNNFKDSMQKKFAMTDLGKMRFFLGVEVTQGEFGIFINQQK 1058

Query: 899  YAGEVLNRFALKDNNPICNQVATGDKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMY 1078
            Y  E+L+RF ++  N +C+ +  G+KL ++ E   VDST +KQ+VG L+YL ATRPD+ +
Sbjct: 1059 YVKEILSRFGMEACNMVCSPMVPGNKLMKDEEGSAVDSTKYKQMVGCLMYLLATRPDLAF 1118

Query: 1079 AVSMISRFMDKPTEKHLIAVKRVLRYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDS 1258
            +V +I+R+M++PTE HL A KR+LRYLKG+  LGI YK    Q+L  + DSDYAGD  D 
Sbjct: 1119 SVCLIARYMERPTEMHLAAAKRILRYLKGSMNLGILYKRNTTQELKGWTDSDYAGDLNDR 1178

Query: 1259 KSTTGYVFMLSS 1294
            KST+GYVF + S
Sbjct: 1179 KSTSGYVFKVGS 1190



 Score =  206 bits (523), Expect(2) = e-120
 Identities = 99/176 (56%), Positives = 132/176 (75%), Gaps = 1/176 (0%)
 Frame = +1

Query: 31   KNPAHLDDFGMLGNLDGKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELS 210
            + P +L+D+     + G++  ++ +++Q+ A+F    DP +Y E +K+  W+KA+D E+ 
Sbjct: 779  RKPGYLNDY-----VTGEELDEETQHLQNLAMFSTKEDPTNYDEAIKNGVWKKAMDQEIE 833

Query: 211  SIEKNDTWKLVELPHGTKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVF 390
            SIE+NDTW+LV LP G K IGVKWIYKTKYNE GE+EKYKA+LVAK Y+QQ GIDY+EVF
Sbjct: 834  SIERNDTWELVTLPAGAKKIGVKWIYKTKYNEKGEVEKYKARLVAKGYSQQQGIDYNEVF 893

Query: 391  VLVARWDTIRCIFAIAA-QGWNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEK 555
              VARWDTIR I ++AA Q W+VYQLDV  AFLHGEL E V+V+QP GY+K+   K
Sbjct: 894  APVARWDTIRTILSLAASQNWSVYQLDVKSAFLHGELVENVYVDQPLGYQKEEKGK 949


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  266 bits (681), Expect(2) = e-120
 Identities = 128/229 (55%), Positives = 166/229 (72%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYS+I +Y +K GF++CPHEH   TLF K      ++I+SLYVDDL +TGN+  M  +FK
Sbjct: 689  WYSRIEAYFIKEGFERCPHEH---TLFVKLSEGGKILIVSLYVDDLIFTGNDEYMFEEFK 745

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
            +SMK +F MSDLG MR+FLGVEV QN  GI+I Q++YA E+L RF ++  N + N +  G
Sbjct: 746  KSMKDEFDMSDLGMMRYFLGVEVVQNEAGIYICQKKYASEILERFGMEKANSVRNPIVPG 805

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KL ++     VD+T +KQIVGSL+YL ATRPD+MY VS+ISRFM  PTE H+ A KRVL
Sbjct: 806  FKLMKDEGGVKVDATMYKQIVGSLMYLTATRPDLMYVVSLISRFMSSPTELHMQAAKRVL 865

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RYLKGT  LG+ Y+   ++ L A+ DSDYAGD +D KST+GY+FM S G
Sbjct: 866  RYLKGTVNLGVLYRRNGEEKLEAFTDSDYAGDVDDRKSTSGYIFMFSDG 914



 Score =  197 bits (500), Expect(2) = e-120
 Identities = 93/158 (58%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
 Frame = +1

Query: 91  LQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWKLVELPHGTKTI 270
           L + E   +  +F   +DP +++E  K   W+ A+D E+ +IE+N TW+L  LP G KTI
Sbjct: 515 LSEEEETNNIVMFTYVTDPTTFEEAFKSAKWKAAMDQEIEAIERNHTWELTILPAGAKTI 574

Query: 271 GVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTIRCIFAIAA-QG 447
           GVKWI+KTK NE GE+EK KA+LVAK YAQQYGIDY+EVF  VARWDTIR + A+AA +G
Sbjct: 575 GVKWIFKTKLNENGEVEKCKARLVAKGYAQQYGIDYTEVFAPVARWDTIRMVIALAAKKG 634

Query: 448 WNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEKKV 561
           W VYQLDV  AFLHGEL E VF++QP+GY K+G E KV
Sbjct: 635 WKVYQLDVKSAFLHGELTEAVFIDQPQGYVKEGDELKV 672


>dbj|GAU31045.1| hypothetical protein TSUD_214810 [Trifolium subterraneum]
          Length = 1248

 Score =  248 bits (632), Expect(2) = e-120
 Identities = 124/254 (48%), Positives = 174/254 (68%), Gaps = 1/254 (0%)
 Frame = +2

Query: 539  RKEVKKKYHQXXXXXXXXXXXXXXWYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDV 718
            +KE K K ++              WYSKI +Y  +  F KCP+E    TLF K   E  +
Sbjct: 868  QKEGKNKVYKLRKALYGLKQAPRAWYSKIETYFAQAKFTKCPYEP---TLFVKQDTEGRM 924

Query: 719  IIISLYVDDLFYTGNNAAMISDFKESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQR 898
            +I+SLYVDDL YT N+  M +DFK+SMK +F+M+DLGKMR+FLGVEV Q   GI + QQ+
Sbjct: 925  LIVSLYVDDLIYTRNDEKMFNDFKKSMKSKFAMTDLGKMRYFLGVEVKQADNGILVYQQK 984

Query: 899  YAGEVLNRFALKDNNPICNQVATGDKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMY 1078
            YA ++L+ F ++  N +C+ +  G+KL ++   K VD+T ++Q++GSL+YL ATRPD+ +
Sbjct: 985  YAQDILSTFGMEICNTVCSLIVPGNKLIKDEGGKLVDATEYRQMIGSLMYLLATRPDLTF 1044

Query: 1079 AVSMISRFMDKPTEKHLIAVKRVLRYLKGTTGLGIFYKFGQKQ-DLLAYCDSDYAGDFED 1255
            +V +I+R+M++PT+ HL A KRVLRYLKGT GLGI+YK   K   L  + DSDYAGD +D
Sbjct: 1045 SVCLIARYMERPTKLHLAAAKRVLRYLKGTIGLGIWYKNVSKDVKLEGWTDSDYAGDMDD 1104

Query: 1256 SKSTTGYVFMLSSG 1297
             K+T+GYVF  +SG
Sbjct: 1105 RKNTSGYVFSYASG 1118



 Score =  215 bits (548), Expect(2) = e-120
 Identities = 99/157 (63%), Positives = 127/157 (80%), Gaps = 1/157 (0%)
 Frame = +1

Query: 88   ELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWKLVELPHGTKT 267
            E Q+ E +Q+  +F N SDP +Y+E  K + WRK +D E+ SIEKNDTW+L +LP+G+K 
Sbjct: 718  EHQEDEELQNLVMFSNESDPRTYEEAAKFEVWRKTMDQEIESIEKNDTWELTDLPNGSKK 777

Query: 268  IGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTIRCIFA-IAAQ 444
            IGVKWIYKTKYNE+G++EKYKA+LVAK Y+QQ+GIDY+EVF  VARWDTIR + A +A++
Sbjct: 778  IGVKWIYKTKYNESGKVEKYKARLVAKGYSQQHGIDYNEVFAPVARWDTIRTVLALLASK 837

Query: 445  GWNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEK 555
            GWNVYQLDV  AFLHGEL E V++EQP GY+K+G  K
Sbjct: 838  GWNVYQLDVKSAFLHGELIENVYIEQPLGYQKEGKNK 874


>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
          Length = 1265

 Score =  268 bits (684), Expect(2) = e-120
 Identities = 130/229 (56%), Positives = 171/229 (74%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYS I +Y +K GF+KC +EH   TLF K + E  V+I+SLYVDDL +TGN+  M +DFK
Sbjct: 938  WYSXIEAYFMKEGFEKCDYEH---TLFIKTRKEGKVLIVSLYVDDLIFTGNDELMFTDFK 994

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
             SMK +F M+DLGKMR+FLG+EV Q   GIFI+Q++YA EVL RF +  +N + N +  G
Sbjct: 995  RSMKDEFDMTDLGKMRYFLGLEVLQRSDGIFISQKKYALEVLQRFGMDKSNSVHNPIVPG 1054

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KL ++     VD TY+KQ+VGSL+YL ATRPD+M+ VS+ISR+M+ PTE HL A KRVL
Sbjct: 1055 FKLMKDEGGVKVDKTYYKQVVGSLMYLXATRPDMMFVVSLISRYMENPTELHLQAAKRVL 1114

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RYL+GTT  GIFY+ G   +L+ Y +SD+AGD ++ KST+GYVF+LSSG
Sbjct: 1115 RYLQGTTEFGIFYRKGGDDELVTYTBSDHAGDLDERKSTSGYVFLLSSG 1163



 Score =  194 bits (494), Expect(2) = e-120
 Identities = 99/176 (56%), Positives = 128/176 (72%), Gaps = 1/176 (0%)
 Frame = +1

Query: 37   PAHLDDFGMLGNLDGKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELSSI 216
            PA + D+      D  + L + +N    A+F   +DPI +++ VK + W+KA+D EL++I
Sbjct: 753  PAWMRDY------DIGEGLSEEDNEAHLAMFAA-ADPIHFEDAVKSEKWKKAMDLELAAI 805

Query: 217  EKNDTWKLVELPHGTKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVL 396
             KN TW+L ELP G K IGVKWIYKTK+NE GE++KYKA+LVAK Y QQ+G+DY+EVF  
Sbjct: 806  NKNGTWELTELPEGGKKIGVKWIYKTKFNENGEVDKYKARLVAKGYTQQHGVDYTEVFAP 865

Query: 397  VARWDTIRCIFAIAAQ-GWNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEKKV 561
            VAR +TIR + A+AAQ  W +YQLDV  AFLHGELNE VFVEQP GY +KG E+KV
Sbjct: 866  VARMETIRLVVALAAQRKWTIYQLDVKSAFLHGELNEEVFVEQPCGYVQKGHEQKV 921


>dbj|GAU44848.1| hypothetical protein TSUD_112220 [Trifolium subterraneum]
          Length = 1289

 Score =  253 bits (645), Expect(2) = e-120
 Identities = 123/228 (53%), Positives = 168/228 (73%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WY+KI SY  +  F+KCPHEH   TLF K   E+ ++I+SLYVDDL YTGN++ +  +FK
Sbjct: 933  WYNKIESYFNQEKFQKCPHEH---TLFVKHV-EDKILIVSLYVDDLIYTGNDSKLFEEFK 988

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
             SM+ +F+M+DLGKMR+FLGVEV Q+  GI I+QQ+YA E+L RF ++  N + + +  G
Sbjct: 989  HSMQGKFAMTDLGKMRYFLGVEVTQSEHGIMISQQKYAKEILARFGMEACNGVGSPIVPG 1048

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
            +KLT++   K VD+T +KQ+VG L+YL ATRPD+ Y+V +I+R+MDKPTE H  A KR+L
Sbjct: 1049 NKLTKDENGKLVDATKYKQMVGCLMYLLATRPDLAYSVCLIARYMDKPTEIHSAAAKRIL 1108

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSS 1294
            RYLKG+  LG+ YK    Q+L+ + DSDYAGD +D KST+GYVF   S
Sbjct: 1109 RYLKGSISLGVLYKRSMNQELVGWTDSDYAGDSDDRKSTSGYVFKFGS 1156



 Score =  208 bits (530), Expect(2) = e-120
 Identities = 99/167 (59%), Positives = 125/167 (74%), Gaps = 1/167 (0%)
 Frame = +1

Query: 58   GMLGNLDGKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWK 237
            G L +    +E  +   +Q+ A+    +DPI+Y E VK D W++A+D E+ +I++NDTW+
Sbjct: 749  GYLDHYTSGEEFDEAAQMQNLAMANISNDPITYYEAVKCDEWKQAMDQEIEAIKRNDTWE 808

Query: 238  LVELPHGTKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTI 417
            LV LPHG K IGVKWIYKTKYNE GEIEKYKA+LVAK Y+QQYGIDY+EVF  VARWDTI
Sbjct: 809  LVSLPHGEKRIGVKWIYKTKYNEKGEIEKYKARLVAKGYSQQYGIDYNEVFAPVARWDTI 868

Query: 418  RCIFAIAA-QGWNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEK 555
            R + ++AA Q W VYQLDVN AFLHGEL E V++ QP GY+K   +K
Sbjct: 869  RMVLSLAACQNWFVYQLDVNSAFLHGELTENVYIAQPLGYQKGSIDK 915


>gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1209

 Score =  257 bits (656), Expect(2) = e-120
 Identities = 124/228 (54%), Positives = 168/228 (73%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYSKI SY  +  F+KCPHEH   TLF K   + +V+I+S+YVDDL +TG++A M  +FK
Sbjct: 948  WYSKIESYFTEENFEKCPHEH---TLFMKYDGKGNVLIVSIYVDDLIFTGSSALMFEEFK 1004

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
             SM+ +FSM+DLG+MR FLGVEV Q+  GIFI QQ+YA ++L RF +   N +   +  G
Sbjct: 1005 HSMERKFSMTDLGRMRFFLGVEVMQSDHGIFIYQQKYAKDLLMRFNMAQCNSVNXPIVPG 1064

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
            +KLT++ +   VD+T ++QI+G L+YL ATRPD+ ++V +I+R+M+KP E HL+A KRV+
Sbjct: 1065 NKLTKDQDGSIVDATNYRQIIGCLMYLLATRPDLTFSVCLIARYMEKPKEAHLMAAKRVM 1124

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSS 1294
            RYLKGT  LGI YK G+   L  + DSDYAGDF+D KST+GYVFML S
Sbjct: 1125 RYLKGTLNLGILYKRGEVLKLQGWSDSDYAGDFDDRKSTSGYVFMLGS 1172



 Score =  204 bits (518), Expect(2) = e-120
 Identities = 97/153 (63%), Positives = 119/153 (77%), Gaps = 1/153 (0%)
 Frame = +1

Query: 88   ELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWKLVELPHGTKT 267
            +L   E +Q+ A F N  DPISY E VK + W++A+D E+ SIEKN+TW+LV+LP G K 
Sbjct: 775  DLNSQEELQNLAAFCNNEDPISYDEAVKVEGWKQAMDQEIESIEKNNTWELVDLPKGVKK 834

Query: 268  IGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTIRCIFAIAA-Q 444
            IGVKW+YKTKYNE GE+EK KA+LVAK Y QQYG+D++EVF  VARWDTIR I A+AA +
Sbjct: 835  IGVKWVYKTKYNEHGEVEKLKARLVAKGYTQQYGVDFNEVFAPVARWDTIRAILAVAASK 894

Query: 445  GWNVYQLDVNKAFLHGELNEVVFVEQPEGYEKK 543
            GW V QLDV  AFLHGEL E VFV+QP GY+K+
Sbjct: 895  GWPVNQLDVKSAFLHGELVENVFVDQPPGYDKQ 927


>dbj|GAU24969.1| hypothetical protein TSUD_312040 [Trifolium subterraneum]
          Length = 1326

 Score =  264 bits (674), Expect(2) = e-119
 Identities = 129/230 (56%), Positives = 171/230 (74%), Gaps = 1/230 (0%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYSKI +Y +  GF+KCP EH   TLF K +  ND++IIS+YVDDL  TGNN  +I+DFK
Sbjct: 974  WYSKIETYFLCEGFQKCPVEH---TLFVK-RIGNDILIISIYVDDLIVTGNNQNLITDFK 1029

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
             SMK +F+MSDLGKM+ FLGVEVNQ  +GIFI Q +YA E+L++F +++ N +C+ + TG
Sbjct: 1030 MSMKKKFAMSDLGKMKFFLGVEVNQTEEGIFIHQMKYANEILSKFGMQECNSVCSPIVTG 1089

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KL +N   K  D+  +KQ+VGSL+YL ATRPD+ +AV +++RFM++PTE H  A+KR++
Sbjct: 1090 CKLVKNENGKACDAKSYKQMVGSLMYLLATRPDLAFAVCLVARFMERPTEMHTAAIKRIM 1149

Query: 1151 RYLKGTTGLGIFYK-FGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RY+KGT GLGI YK       L  + DSDYAGD +D KST+GYVFML SG
Sbjct: 1150 RYVKGTVGLGIMYKRTDDNLQLHGWSDSDYAGDLDDRKSTSGYVFMLGSG 1199



 Score =  194 bits (493), Expect(2) = e-119
 Identities = 92/176 (52%), Positives = 127/176 (72%), Gaps = 1/176 (0%)
 Frame = +1

Query: 31   KNPAHLDDFGMLGNLDGKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELS 210
            K P+HL DF ++G      E ++ + + S AV+    DP +Y+E  K   W++A+D E+ 
Sbjct: 787  KTPSHLRDF-VIGR-----EAEEEQELHSLAVYNMCGDPNNYEEASKSQKWKEAMDVEIK 840

Query: 211  SIEKNDTWKLVELPHGTKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVF 390
            +I+ N TW+L ELP  TK IGVKW+YKTKYNE G+++KYKA+LV K Y+Q+YGIDY+EVF
Sbjct: 841  AIQANHTWELTELPKNTKAIGVKWVYKTKYNEMGQVDKYKARLVVKGYSQKYGIDYNEVF 900

Query: 391  VLVARWDTIRCIFAIAA-QGWNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEK 555
              VARW+TIR + A+AA +GW VYQLDV  AFLHG+L+E ++VEQP GY +  + K
Sbjct: 901  APVARWETIRTVLALAASKGWCVYQLDVKSAFLHGDLDEDIYVEQPLGYHQGDNNK 956


>gb|KZV40714.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dorcoceras hygrometricum]
          Length = 536

 Score =  261 bits (667), Expect(2) = e-119
 Identities = 126/230 (54%), Positives = 170/230 (73%), Gaps = 1/230 (0%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            W+S+I +Y +K GF   P+E    TLF K    N  +I+S+YVDDL +TGNN  ++ +FK
Sbjct: 176  WFSRIEAYFIKEGFSNSPNEQ---TLFIKRFGGN-FLIVSVYVDDLLFTGNNVRLLEEFK 231

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQN-HKGIFITQQRYAGEVLNRFALKDNNPICNQVAT 967
             SMK +F M+DLGKMR+FLG+EV QN  KG+FI Q++YA EV++RF ++ +NP+CN +A 
Sbjct: 232  CSMKREFDMTDLGKMRYFLGIEVVQNPEKGVFICQRKYAAEVIDRFGMQHHNPVCNPIAP 291

Query: 968  GDKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRV 1147
            G K+ R+   + +DST +KQ+VGSL+YL A+RPD+M+ V ++SRFM  PT+ HL   KRV
Sbjct: 292  GQKIGRDEAGEKIDSTLYKQMVGSLMYLTASRPDLMFVVCLLSRFMASPTQLHLAVAKRV 351

Query: 1148 LRYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            LRYLKGT   GI+YK G   DL+AY DSDYAGD +DSKST+GY FM+S G
Sbjct: 352  LRYLKGTLECGIWYKHGTISDLVAYTDSDYAGDMDDSKSTSGYAFMMSGG 401



 Score =  196 bits (499), Expect(2) = e-119
 Identities = 90/149 (60%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
 Frame = +1

Query: 118 FAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWKLVELPHGTKTIGVKWIYKTK 297
           +  F   SDP +++E  KH  WRKA+D+E+SSIEKN TW L+ LP G K IGVKWIYKTK
Sbjct: 11  YLAFMIISDPTNFEEASKHQKWRKAMDAEISSIEKNQTWSLISLPDGAKAIGVKWIYKTK 70

Query: 298 YNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTIRCIFAIAA-QGWNVYQLDVN 474
            NE GE++K+KA+LV K Y Q+YG+DYSEVF  VAR DT+R I A+AA +GW VYQLDV 
Sbjct: 71  LNELGEVDKFKARLVVKGYTQEYGVDYSEVFAPVARMDTVRMILAVAAHKGWGVYQLDVK 130

Query: 475 KAFLHGELNEVVFVEQPEGYEKKGSEKKV 561
            AFLHG+L E ++VEQP+GYE  G ++ V
Sbjct: 131 SAFLHGKLEEDIYVEQPQGYEVSGKKEMV 159


>gb|PRQ21321.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1270

 Score =  269 bits (687), Expect(2) = e-118
 Identities = 128/229 (55%), Positives = 172/229 (75%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYS+I ++ VK GF KCP+EH   TL+TK  ++  ++++ LYVDDL YT N++ M+  FK
Sbjct: 971  WYSRIDAFFVKEGFCKCPYEH---TLYTKLGDDGRILVVCLYVDDLIYTSNDSLMLDAFK 1027

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
            +SM  +F M+DLG MR+FLG+E+ Q+  GIFI+Q++YA EVL RF +   N +C  +  G
Sbjct: 1028 KSMMEEFDMTDLGLMRYFLGIEILQSSAGIFISQKKYALEVLERFKMGICNSVCTPIEVG 1087

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KLT+N   K V++T +KQIVGSL+YL  TRPDIM+AVSM+SR+M+KP E HL+AVKR+L
Sbjct: 1088 LKLTKNGSGKRVNATLYKQIVGSLMYLTTTRPDIMFAVSMVSRYMEKPMEDHLVAVKRIL 1147

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RYLKGT  LGIFYK  Q  +L  + DSDYAGD +D KST+G+VFM+ SG
Sbjct: 1148 RYLKGTADLGIFYKKFQSSNLCGFTDSDYAGDMDDRKSTSGFVFMMGSG 1196



 Score =  187 bits (474), Expect(2) = e-118
 Identities = 92/178 (51%), Positives = 125/178 (70%), Gaps = 1/178 (0%)
 Frame = +1

Query: 31   KNPAHLDDFGMLGNLDGKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELS 210
            K PA + D+   G      +L   E I   A+F ++ DPI+Y+E  K   WR+A+D+E++
Sbjct: 784  KRPAWMMDYESGG------DLIDDEAIAHLALF-SYCDPITYEEAAKETKWREAMDAEMN 836

Query: 211  SIEKNDTWKLVELPHGTKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVF 390
            SIEKNDTW+L +LP G ++IGVKW+YKTK  + GE++KYKA+LVAK Y Q++G+DY EVF
Sbjct: 837  SIEKNDTWELTKLPKGQQSIGVKWVYKTKLRQDGEVDKYKARLVAKGYKQKFGVDYQEVF 896

Query: 391  VLVARWDTIRCIFAIAAQ-GWNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEKKV 561
              VA+ DT+R +  +AAQ  W VYQLDV  AFLHGEL E V++ QP GY K+G E +V
Sbjct: 897  APVAKLDTVRMVLCLAAQNSWPVYQLDVKSAFLHGELEEEVYINQPPGYVKQGFENQV 954


>dbj|GAU23220.1| hypothetical protein TSUD_172480 [Trifolium subterraneum]
          Length = 1323

 Score =  261 bits (666), Expect(2) = e-118
 Identities = 127/228 (55%), Positives = 166/228 (72%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYSKI SY V+  F KCPHEH   TLF K   +  ++I+SLYVDDL +TGNN AM   FK
Sbjct: 972  WYSKIESYFVQENFVKCPHEH---TLFVKQDKDGSILIVSLYVDDLIFTGNNEAMFESFK 1028

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
            +SMK QF+M+DLGKMR FLGVEV Q + GIFI QQ+YA EVL RF +   N +C+ +  G
Sbjct: 1029 KSMKSQFAMTDLGKMRFFLGVEVKQLNCGIFIHQQKYANEVLERFNMSQCNKVCSPMVPG 1088

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
            +KLT++   K VD+T ++Q++G L+YL ATR D+ ++V +I+R+M++PTE HL A KRVL
Sbjct: 1089 NKLTKDENGKPVDATSYRQMIGCLMYLLATRSDLTFSVCLIARYMERPTEIHLAAAKRVL 1148

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSS 1294
            RYLKG+  LGI YK   +  L  + DSDYAGD +D K+T+GYVFM+ S
Sbjct: 1149 RYLKGSVDLGILYKANCELTLEGWSDSDYAGDLDDRKNTSGYVFMIGS 1196



 Score =  194 bits (494), Expect(2) = e-118
 Identities = 94/145 (64%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
 Frame = +1

Query: 103  ENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWKLVELPHGTKTIGVKW 282
            + +Q+ AVF + SDP +Y+E  K   WRKA+D E+ SIE+NDTW+LV LP   K IGVKW
Sbjct: 804  DQMQNLAVFCDNSDPHTYEEASKMTVWRKAMDQEIESIERNDTWELVTLPREAKRIGVKW 863

Query: 283  IYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTIRCIFAIAA-QGWNVY 459
            I+KTKYNE GEIEKYKA+LVAK Y+QQ+GID++EVF  VARWDTIR I A+AA QGW VY
Sbjct: 864  IFKTKYNENGEIEKYKARLVAKGYSQQHGIDFNEVFAPVARWDTIRTILAVAASQGWFVY 923

Query: 460  QLDVNKAFLHGELNEVVFVEQPEGY 534
            Q DV  AFLHGEL E V+++QP GY
Sbjct: 924  QFDVKSAFLHGELQENVYIDQPPGY 948


>gb|KZV22085.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dorcoceras hygrometricum]
          Length = 536

 Score =  256 bits (655), Expect(2) = e-117
 Identities = 124/230 (53%), Positives = 169/230 (73%), Gaps = 1/230 (0%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            W+S+I +Y +K GF   P+E    TLF K    N  +I+S+YVDDL +TGNN  ++ +FK
Sbjct: 176  WFSRIEAYFIKEGFSNSPNEQ---TLFIKRFGGN-FLIVSVYVDDLLFTGNNVRLLEEFK 231

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQN-HKGIFITQQRYAGEVLNRFALKDNNPICNQVAT 967
             SMK +F M+DLGKMR+FLG+EV QN  KG+FI Q++YA E+++RF ++ +NP+ N +A 
Sbjct: 232  CSMKREFDMTDLGKMRYFLGIEVVQNPEKGVFICQRKYAAEMIDRFGMQHHNPVYNPIAP 291

Query: 968  GDKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRV 1147
            G K+ R+   + +DST +KQ+VGSL+YL A+RPD+M+ V ++SRFM  PT+ HL   KRV
Sbjct: 292  GQKIGRDEAGEKIDSTLYKQMVGSLMYLTASRPDLMFVVCLLSRFMASPTQLHLAVAKRV 351

Query: 1148 LRYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            LRYLKGT   GI+YK G   DL+AY DSDYAGD +DSKST+GY FM+S G
Sbjct: 352  LRYLKGTLEYGIWYKHGTMSDLVAYTDSDYAGDMDDSKSTSGYAFMMSGG 401



 Score =  197 bits (501), Expect(2) = e-117
 Identities = 90/149 (60%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
 Frame = +1

Query: 118 FAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWKLVELPHGTKTIGVKWIYKTK 297
           +  F   SDP +++E  KH  WRKA+D+E+SSIEKN TW L+ LP G K IGVKWIYKTK
Sbjct: 11  YLAFMIISDPTNFEEAAKHQKWRKAMDAEISSIEKNQTWSLISLPDGAKAIGVKWIYKTK 70

Query: 298 YNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTIRCIFAIAA-QGWNVYQLDVN 474
            NE GE++K+KA+LV K Y Q+YG+DYSEVF  VAR DT+R I A+AA +GW VYQLDV 
Sbjct: 71  LNELGEVDKFKARLVVKGYTQEYGVDYSEVFAPVARMDTVRMILAVAAHKGWGVYQLDVK 130

Query: 475 KAFLHGELNEVVFVEQPEGYEKKGSEKKV 561
            AFLHG+L E ++VEQP+GYE  G ++ V
Sbjct: 131 SAFLHGKLEEDIYVEQPQGYEVSGKKEMV 159


>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  261 bits (667), Expect(2) = e-117
 Identities = 126/229 (55%), Positives = 168/229 (73%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            W+S+I ++ +  GF+ C  E    TLFTK  NE  +II+S+YVDDL +TGN   M+S+FK
Sbjct: 971  WFSRIEAHFIGEGFQMCDSEQ---TLFTKRSNEGKIIIVSVYVDDLIFTGNCEVMMSEFK 1027

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
             SM  +F MSDLGKMR+FLG+EV Q   GI+I Q++YA EVL RF + ++N + + +  G
Sbjct: 1028 NSMLREFDMSDLGKMRYFLGIEVLQKPDGIYICQRKYASEVLKRFGMMESNLVTSPIVPG 1087

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             K++RN +   VD TY+KQ+VGSL+YL ATRPD+M+A  +ISR+M KP + HL A KR+L
Sbjct: 1088 FKVSRNGDGNIVDETYYKQLVGSLMYLTATRPDMMFATCLISRYMTKPMQTHLQAAKRLL 1147

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RYLKGT   GI+YK G   +LLA+ DSDYAGD ED KST+GYVF++SSG
Sbjct: 1148 RYLKGTVNYGIYYKKGGDGELLAFTDSDYAGDEEDRKSTSGYVFLMSSG 1196



 Score =  189 bits (481), Expect(2) = e-117
 Identities = 89/141 (63%), Positives = 112/141 (79%), Gaps = 1/141 (0%)
 Frame = +1

Query: 142  DPISYKEVVKHDNWRKALDSELSSIEKNDTWKLVELPHGTKTIGVKWIYKTKYNEAGEIE 321
            DP+ ++E VK +NWR A++ E+ SIEKN TW L ELP G K IGVKW+YKTKYNE G+I+
Sbjct: 814  DPLCFEEAVKSENWRLAMEKEIKSIEKNQTWTLTELPAGAKRIGVKWVYKTKYNEHGKID 873

Query: 322  KYKAKLVAKWYAQQYGIDYSEVFVLVARWDTIRCIFAIAA-QGWNVYQLDVNKAFLHGEL 498
            KYKA+LVAK Y+Q++G+DY+EV+  VAR DTIR I AIAA + W ++QLDV  AFLHG+L
Sbjct: 874  KYKARLVAKGYSQKHGVDYTEVYAPVARMDTIRMIIAIAAHKNWQIFQLDVKSAFLHGKL 933

Query: 499  NEVVFVEQPEGYEKKGSEKKV 561
            +E V+VEQP GYEK GSE  V
Sbjct: 934  DEDVYVEQPRGYEKIGSEHLV 954


>gb|PNY15642.1| copia-type polyprotein [Trifolium pratense]
          Length = 822

 Score =  258 bits (660), Expect(2) = e-116
 Identities = 122/231 (52%), Positives = 168/231 (72%), Gaps = 2/231 (0%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYSKI SY     F KC HEH   TLF K   +  ++I+SLYVDDL YTGN+  M+ +FK
Sbjct: 465  WYSKIQSYFDTEKFMKCSHEH---TLFVKYGEKGKILIVSLYVDDLIYTGNDKQMMEEFK 521

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
             SMK +F+M+DLGKM++FLGVEVNQ  +GIFI QQ+YA ++L RF ++D N +C  +  G
Sbjct: 522  GSMKKKFAMTDLGKMKYFLGVEVNQTQQGIFINQQKYASDILTRFGMQDCNKVCTPIVPG 581

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KL ++   +  D+T +KQ++G L+YL ATRPD+ Y+V + +R+MDKPTE H+IAVKR++
Sbjct: 582  CKLVKDENGRPADATSYKQMIGCLMYLLATRPDLTYSVCLAARYMDKPTEMHVIAVKRIM 641

Query: 1151 RYLKGTTGLGIFYKFGQKQD--LLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RYLKGT   GI YK   +++  L+ + DSDYAGD++D KST+GYVF + +G
Sbjct: 642  RYLKGTMSYGILYKSTDEENVTLVGWTDSDYAGDYDDRKSTSGYVFSIGTG 692



 Score =  191 bits (485), Expect(2) = e-116
 Identities = 92/161 (57%), Positives = 120/161 (74%), Gaps = 1/161 (0%)
 Frame = +1

Query: 58  GMLGNLDGKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWK 237
           G L + D     ++   IQ FA+F +  DP SY++ +K D W+KA++SE+ SI KNDTW+
Sbjct: 281 GYLEDYDTTTGEEQENMIQHFALFSSKEDPESYEDAIKIDVWKKAMESEIESINKNDTWE 340

Query: 238 LVELPHGTKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTI 417
           L  LP G K IGVKWI+KTKYNE G IEK+KA+LVAK YAQ+YG+D+SEVF  VARWDTI
Sbjct: 341 LTTLPKGAKAIGVKWIFKTKYNEEGRIEKHKARLVAKGYAQKYGVDFSEVFAPVARWDTI 400

Query: 418 RCIFAIAA-QGWNVYQLDVNKAFLHGELNEVVFVEQPEGYE 537
           R I ++AA + W ++QLDV  AFLHGEL E V+V+QP G++
Sbjct: 401 RTILSLAASKNWCIFQLDVKSAFLHGELLENVYVQQPLGFQ 441


>gb|PNY15444.1| retrotransposon-related protein [Trifolium pratense]
          Length = 778

 Score =  268 bits (685), Expect(2) = e-116
 Identities = 128/231 (55%), Positives = 171/231 (74%), Gaps = 2/231 (0%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYSKI SY     F+KCP+EH   TLF K   +N+++++SLYVDDL YTGNN  ++ +FK
Sbjct: 519  WYSKIESYFNAEKFEKCPYEH---TLFVKYGMKNEILVVSLYVDDLIYTGNNQRLMDEFK 575

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
             SMK +F+M+DLGKMR FLGVEV+Q+  GIFITQQ+YA EVL RF ++  N + + +  G
Sbjct: 576  SSMKKKFAMTDLGKMRFFLGVEVDQSSNGIFITQQKYATEVLARFGMEHCNQVSSPIVPG 635

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KL R+  ++  D+T +KQ++G L+YL ATRPD+ Y+V +++RFM++PTE H+ AVKR++
Sbjct: 636  CKLVRDETEQGTDATVYKQMIGCLMYLLATRPDLAYSVCLVARFMERPTEMHVTAVKRIM 695

Query: 1151 RYLKGTTGLGIFYKFGQKQD--LLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RYLKGT G GI YKF  K    L  +CDSDYAGD +D KSTTG+VFML  G
Sbjct: 696  RYLKGTLGFGIMYKFNSKSGMCLKGWCDSDYAGDLDDRKSTTGFVFMLGGG 746



 Score =  180 bits (457), Expect(2) = e-116
 Identities = 88/155 (56%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
 Frame = +1

Query: 79  GKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELSSIEKNDTWKLVELPHG 258
           G+   +  E + + AV    +DPISY E VKH  WR+A+D E+ SI+ NDTW+L  LP G
Sbjct: 368 GQAAEEDDEELHNLAVINTNNDPISYNEAVKHAVWRQAMDIEMESIKNNDTWELTTLPAG 427

Query: 259 TKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVFVLVARWDTIRCIFAIA 438
             +IGVKWIYKTKYNE GEI+KYKA+LVAK Y Q++GIDY EVF  VARWD IR I A A
Sbjct: 428 CNSIGVKWIYKTKYNEKGEIDKYKARLVAKGYTQKHGIDYHEVFAPVARWDNIRSILAFA 487

Query: 439 A-QGWNVYQLDVNKAFLHGELNEVVFVEQPEGYEK 540
           A  GW +YQLDV  AFL+GEL E ++      Y K
Sbjct: 488 ANNGWKIYQLDVKSAFLYGELTENIYQAPRAWYSK 522


>gb|PRQ55986.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 709

 Score =  269 bits (688), Expect(2) = e-116
 Identities = 129/229 (56%), Positives = 171/229 (74%)
 Frame = +2

Query: 611  WYSKIGSYLVKGGFKKCPHEHKVHTLFTKAKNENDVIIISLYVDDLFYTGNNAAMISDFK 790
            WYS I ++ VK GF KCP+EH   TL+TK  ++  ++++ LYVDDL YT NN+ M+  FK
Sbjct: 334  WYSHIDAFFVKEGFCKCPYEH---TLYTKLGDDGRILVMCLYVDDLIYTSNNSLMLDAFK 390

Query: 791  ESMKMQFSMSDLGKMRHFLGVEVNQNHKGIFITQQRYAGEVLNRFALKDNNPICNQVATG 970
            +SM  +F M+DLG MR+FLG+E+ Q+  GIFI+Q++YA EVL RF + + N +C     G
Sbjct: 391  KSMMEEFDMTDLGLMRYFLGIEILQSSAGIFISQKKYALEVLERFKMGNCNSVCTPTEVG 450

Query: 971  DKLTRNNEDKCVDSTYFKQIVGSLVYLNATRPDIMYAVSMISRFMDKPTEKHLIAVKRVL 1150
             KLT+N   K V++T +KQIVGSL+YL  TRPDIM+AVSM+SR+M+KP E HL+AVKR+L
Sbjct: 451  LKLTKNGSGKRVNATLYKQIVGSLMYLTTTRPDIMFAVSMVSRYMEKPMEDHLVAVKRIL 510

Query: 1151 RYLKGTTGLGIFYKFGQKQDLLAYCDSDYAGDFEDSKSTTGYVFMLSSG 1297
            RYLKGT  LGIFYK  Q  +L  + DSDYAGD +D KST+G+VFM+ SG
Sbjct: 511  RYLKGTADLGIFYKKFQSSNLCGFTDSDYAGDMDDRKSTSGFVFMMGSG 559



 Score =  179 bits (454), Expect(2) = e-116
 Identities = 90/178 (50%), Positives = 121/178 (67%), Gaps = 1/178 (0%)
 Frame = +1

Query: 31  KNPAHLDDFGMLGNLDGKDELQKGENIQSFAVFENFSDPISYKEVVKHDNWRKALDSELS 210
           K PA + D+   G      +L   E I   A+F +  DPI+YKE  K   WR+ +D+E++
Sbjct: 147 KRPAWMMDYESGG------DLIDDEAIAHLALFSD-CDPITYKEAAKETKWREVMDAEMN 199

Query: 211 SIEKNDTWKLVELPHGTKTIGVKWIYKTKYNEAGEIEKYKAKLVAKWYAQQYGIDYSEVF 390
           SIEKNDTW+L +LP G ++IGVKW+YKTK  + GE++KYKA+LVAK Y Q++G+DY EVF
Sbjct: 200 SIEKNDTWELTKLPKGQQSIGVKWVYKTKLRQDGEVDKYKARLVAKGYKQKFGVDYQEVF 259

Query: 391 VLVARWDTIRCIFAIAAQ-GWNVYQLDVNKAFLHGELNEVVFVEQPEGYEKKGSEKKV 561
             VA+ DT+  +  +AAQ  W VYQLDV  AFLHGEL E V++ QP GY K+  E +V
Sbjct: 260 APVAKLDTVWMVLCLAAQNSWPVYQLDVKSAFLHGELEEEVYINQPPGYVKQVFENQV 317