BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00017855
         (2162 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX71533.1| ribonuclease H [Trifolium pratense]                    678   0.0  
gb|PNX72264.1| ribonuclease H [Trifolium pratense]                    676   0.0  
gb|PNY14301.1| ribonuclease H [Trifolium pratense]                    687   0.0  
dbj|GAU35627.1| hypothetical protein TSUD_30450 [Trifolium subte...   661   0.0  
dbj|GAU41525.1| hypothetical protein TSUD_140560 [Trifolium subt...   649   0.0  
gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]           604   0.0  
gb|PNY15111.1| ribonuclease H [Trifolium pratense]                    608   0.0  
gb|PNX95041.1| ribonuclease H, partial [Trifolium pratense]           592   0.0  
dbj|GAU39028.1| hypothetical protein TSUD_59840 [Trifolium subte...   594   0.0  
gb|PNX80752.1| ribonuclease H, partial [Trifolium pratense]           563   0.0  
dbj|GAU30026.1| hypothetical protein TSUD_161120 [Trifolium subt...   582   0.0  
gb|PNX92710.1| ribonuclease H [Trifolium pratense]                    543   e-177
gb|PNY01158.1| ribonuclease H, partial [Trifolium pratense]           525   e-170
dbj|GAU21787.1| hypothetical protein TSUD_329120, partial [Trifo...   493   e-161
gb|PNY16050.1| ribonuclease H, partial [Trifolium pratense]           410   e-126
gb|PNY02790.1| ribonuclease H, partial [Trifolium pratense]           403   e-125
gb|PNX98065.1| ribonuclease H [Trifolium pratense]                    403   e-124
gb|PNX96384.1| ribonuclease H, partial [Trifolium pratense]           410   e-123
gb|PNX95563.1| ribonuclease H, partial [Trifolium pratense]           406   e-123
gb|PNY02482.1| ribonuclease H, partial [Trifolium pratense]           403   e-123

>gb|PNX71533.1| ribonuclease H [Trifolium pratense]
          Length = 798

 Score =  678 bits (1749), Expect = 0.0
 Identities = 322/520 (61%), Positives = 391/520 (75%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK  + K+IHGIK+AR APQ+SHLFFADDSLLFTRA+  E   IL+IL TYQ ASGQVVN
Sbjct: 86   HKAAKTKEIHGIKVARSAPQLSHLFFADDSLLFTRASSHETSKILNILDTYQQASGQVVN 145

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
            LDKSEASFSRNV+  +K  ICNMMG KAVEAQS+YLGFPIPFGRSKK +FSFVM+RVW K
Sbjct: 146  LDKSEASFSRNVRINDKDMICNMMGAKAVEAQSRYLGFPIPFGRSKKVVFSFVMDRVWKK 205

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            +KGWKE+ LS AG ETLIKAVAQAIPNYILSCY+MP+GCC DIDSMLAKFWWG+ +E ++
Sbjct: 206  VKGWKERFLSRAGKETLIKAVAQAIPNYILSCYKMPVGCCKDIDSMLAKFWWGSKDESRK 265

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            IHWMSW K+S+ K  GGMGFRG  DFN ALLGK CWRLV G+ SLLE++ KSKYYPNGN 
Sbjct: 266  IHWMSWQKLSKAKLDGGMGFRGMEDFNKALLGKQCWRLVTGESSLLEKIFKSKYYPNGNF 325

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            M AK GYQPSY WRS+LSAR LV  GG W IGNG   +IW DRWL D   +  +     L
Sbjct: 326  MSAKEGYQPSYGWRSILSARDLVDKGGLWKIGNGRKVKIWKDRWLPDLKVIEFKGVNCPL 385

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
             ++ CV++LID  T+ W R LI   FD   A +I + PLS RLP+D L+W WEK+G++SV
Sbjct: 386  PEDACVAELIDVDTKQWKRDLIFSCFDRLVAKQIINIPLSFRLPHDLLIWNWEKDGEYSV 445

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRK 902
            ++AYH LC+  AR  P  S     K++KEIWRA VPN+++NF+W+L K+ILPTR++L +K
Sbjct: 446  RSAYHLLCDEKARFQPGPSCPQRSKLWKEIWRAPVPNKIKNFMWRLAKNILPTRSNLHKK 505

Query: 901  GIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDS 722
            GI LD+ CPLCS+E  + +HLFL  ++ KLTLFAS +G+  P+  D+  W+L WL C+D 
Sbjct: 506  GITLDLLCPLCSSEEESSQHLFLKCDMFKLTLFASHLGSHIPIDIDLHDWILKWLVCQDP 565

Query: 721  EGAQLFCILLWMVWKARNETVFNNRKPDLIRIANAALDFV 602
             G QLFC LLW  W  RN  +FN  + D   +A  AL FV
Sbjct: 566  LGVQLFCTLLWKFWAGRNAVIFNGWQMDPTFLALDALSFV 605



 Score = 92.8 bits (229), Expect(2) = 2e-17
 Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 9/154 (5%)
 Frame = -3

Query: 606  LSEYNAANATRSHTPMQDQQLPRPINSQQICA-----YVDAGSFNDRTTCWGLCVVNPEG 442
            + E+N AN +R+   +  Q +  P  S+  C      +VDAG  N   T WGL + N  G
Sbjct: 605  VQEFNEANPSRNRRALVSQSISEP--SRSTCTSMNSMFVDAGCCNSGHTVWGLVLRNLNG 662

Query: 441  NIIYSACKRDTISVEAVIAEAIGLRWGIQQILEQNIIPATFFTDAQVVSQCISNPSMVAS 262
              ++SACKR+ I+ E ++AEA+G+RW +Q   +Q I   + ++DA  V  CI+  S  A+
Sbjct: 663  ETVFSACKREDITAEPLLAEALGVRWALQVATDQGINSVSIYSDAANVVNCINKRSNFAA 722

Query: 261  IEHII*DCRALLDSIPGCYVRHI----RCEGNHL 172
            I  I  DCR L+  +    V  I     C+ ++L
Sbjct: 723  INLIAQDCRNLMAGLGNVSVMFISRTQNCDAHNL 756



 Score = 27.7 bits (60), Expect(2) = 2e-17
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 169 AHSLVGLAKRIGCNNWLG 116
           AH+LV LAK +G   WLG
Sbjct: 753 AHNLVSLAKVVGSRTWLG 770


>gb|PNX72264.1| ribonuclease H [Trifolium pratense]
          Length = 854

 Score =  676 bits (1744), Expect = 0.0
 Identities = 324/520 (62%), Positives = 390/520 (75%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK    K+IHGIK+AR AP++SHLFFADDSLLF+RA+  EA  IL+IL TY+ ASGQ+VN
Sbjct: 143  HKAANSKEIHGIKVARTAPRLSHLFFADDSLLFSRASSHEASTILNILATYEQASGQMVN 202

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
            LDKSEASFSRNV+  +K  ICNMMG KAVEA S+YLGFPIPFGRSKKA+FSFVM+RVW K
Sbjct: 203  LDKSEASFSRNVRIEDKDMICNMMGAKAVEAHSRYLGFPIPFGRSKKAVFSFVMDRVWKK 262

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            +KGWKE+ LS AG ETLIKAVAQAIPNYILSCY+MP+GCC DIDSMLAKFWWG++EE ++
Sbjct: 263  VKGWKERFLSRAGKETLIKAVAQAIPNYILSCYKMPVGCCKDIDSMLAKFWWGSNEERRK 322

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            IHWMSW ++S+ K  GGMGFRG  DFN ALLGKHCWRLV G+ SLLE+VLKS+YYP GN 
Sbjct: 323  IHWMSWERLSKAKLDGGMGFRGMEDFNKALLGKHCWRLVTGESSLLEKVLKSRYYPRGNF 382

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            + AK GYQPSY WRS+LSAR LV  GG W IGNGS  RIW D W++D   + SR     L
Sbjct: 383  LCAKEGYQPSYGWRSILSARDLVTKGGVWKIGNGSNVRIWKDTWMADLKCIESRGPNCPL 442

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
             ++  VS LID  T+ W R +I   F+   A  I S PLS RLP D L+W WEK+G++SV
Sbjct: 443  PEDALVSDLIDVDTKQWKRDMIFSCFNRQVAQTIISIPLSFRLPQDTLIWNWEKDGEYSV 502

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRK 902
            ++AYH LC+  AR  P  S     K++KEIWRA VPN+V+NFLW+L K+ILPTRT+L  K
Sbjct: 503  RSAYHLLCDEKARLQPGPSCPRRSKLWKEIWRAPVPNKVKNFLWRLAKNILPTRTNLHNK 562

Query: 901  GIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDS 722
            GI LD+ CPLC  E  + +HLFL  +I KLTLFAS +G+  P+  D+  W+L WL C+D 
Sbjct: 563  GITLDLQCPLCFREEESSQHLFLKCDIFKLTLFASHLGSHIPMNIDLHDWILEWLLCQDP 622

Query: 721  EGAQLFCILLWMVWKARNETVFNNRKPDLIRIANAALDFV 602
             G QLFC+LLW  W  RN  VFN  + D  R+A  A+ FV
Sbjct: 623  MGVQLFCVLLWKFWAGRNAAVFNGVQLDPGRLAIDAMSFV 662



 Score = 87.0 bits (214), Expect(2) = 4e-15
 Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
 Frame = -3

Query: 600  EYNAANATR------SHTPMQDQQLPRPINSQQICAYVDAGSFNDRTTCWGLCVVNPEGN 439
            ++N AN  R      +H P+Q   +  PI S     +VDAG  N   T WGL + N +G 
Sbjct: 664  DFNEANPPRCRRAPVAHVPIQPG-MTNPIFS----LFVDAGCSNSGHTVWGLVLRNSDGE 718

Query: 438  IIYSACKRDTISVEAVIAEAIGLRWGIQQILEQNIIPATFFTDAQVVSQCISNPSMVASI 259
             + SACKR+   V+ ++AEA+G+RW +Q +++Q I   + ++DA  V  CI+  S  A+I
Sbjct: 719  TVLSACKREDFYVDPLMAEALGVRWALQLVVDQGINSVSIYSDAANVVNCINRNSSFAAI 778

Query: 258  EHII*DCRALLDSI 217
              I  DCR L++ +
Sbjct: 779  NLIAEDCRKLMNRL 792



 Score = 25.4 bits (54), Expect(2) = 4e-15
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 208 LCETY*VRRKPSVAHSLVGLAKRIGCNNWLG 116
           +C  +  R + S AH+L  LA+ +G   W+G
Sbjct: 795 VCVLFVSRTQNSDAHNLASLARIMGNRTWVG 825


>gb|PNY14301.1| ribonuclease H [Trifolium pratense]
          Length = 1196

 Score =  687 bits (1774), Expect = 0.0
 Identities = 318/520 (61%), Positives = 401/520 (77%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK    K++HGIK+AR APQ+SHLFFADDSLLF+RAN +EA  I+ IL TYQ ASGQVVN
Sbjct: 490  HKASVSKKLHGIKVARSAPQLSHLFFADDSLLFSRANSDEAHTIMKILKTYQNASGQVVN 549

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
            LDKSEASFSRNV +I+K +ICNMMGVKAVEAQS+YLGFPIPFGRSKK IFSFVM+R+W K
Sbjct: 550  LDKSEASFSRNVPSIDKNSICNMMGVKAVEAQSRYLGFPIPFGRSKKVIFSFVMDRIWKK 609

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            +KGWKE+CLS AG ETLIKAVAQAIPNYILSCY+MP+GCC DID+MLAKFWWG++++ ++
Sbjct: 610  VKGWKERCLSRAGKETLIKAVAQAIPNYILSCYKMPLGCCKDIDAMLAKFWWGSNDDKRK 669

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            IHWMSW ++S+PK  GGMGFRG  DFN ALLGKHCWRLV G+CSLLE+VL+S+YYP G+ 
Sbjct: 670  IHWMSWKRLSKPKNTGGMGFRGMEDFNKALLGKHCWRLVGGECSLLEKVLRSRYYPKGDF 729

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            M A  GYQPS+AWRS++SAR+++  G +W +GNG   RIW DRW+ D + L SR+   +L
Sbjct: 730  MTASEGYQPSFAWRSIISAREVINLGERWCVGNGQNVRIWKDRWMVDRNLLRSRTPSCDL 789

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
            +++  VS LID  TR WNR L+   FD  EA KI S PLS RLP D  +W WEKNG +SV
Sbjct: 790  DEDSKVSALIDHDTRQWNRTLVFNCFDEAEAKKIVSIPLSCRLPLDNRIWHWEKNGAYSV 849

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRK 902
            ++AYH LC+   +  P  S    +KI+KEIW+A +PN+++NFLW+L K ILPTR +L +K
Sbjct: 850  RSAYHLLCDEKRKLEPGPSIVREEKIWKEIWKAPLPNKIKNFLWRLVKDILPTRENLAKK 909

Query: 901  GIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDS 722
            GI LD++CPLC     +  HLF+  NI +LTLFAS +G+  P   D+  W+L+WLTC+D 
Sbjct: 910  GINLDLSCPLCHHVLESSNHLFMHCNIMRLTLFASNLGSHIPHSVDLSVWILSWLTCKDM 969

Query: 721  EGAQLFCILLWMVWKARNETVFNNRKPDLIRIANAALDFV 602
             G QLFC+LLW  W  RN+ +F +   D I +A  A+++V
Sbjct: 970  IGTQLFCVLLWKFWYGRNQVIFKDAVFDPILLAADAIEYV 1009



 Score = 94.4 bits (233), Expect(2) = 6e-17
 Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
 Frame = -3

Query: 687  WFGRQGMKLCLTTGNQI*LELRMLHWILSEYNAANATR-SHTPMQDQQLPRPINSQQICA 511
            W+GR  +       + I L    + ++  E+N AN  R +   +Q    PR  +S     
Sbjct: 983  WYGRNQVIFKDAVFDPILLAADAIEYV-HEFNEANPRRCNQVVLQHISAPRLDDSNMQLM 1041

Query: 510  YVDAGSFNDRTTCWGLCVVNPEGNIIYSACKRDTISVEAVIAEAIGLRWGIQQILEQNII 331
            + DAG FN+  T WGL + N +G   +SACKR+ I VE  +AEA+G+RW ++  L Q++ 
Sbjct: 1042 FTDAGCFNNGYTGWGLVLRNVDGTTSFSACKRENIEVEPALAEALGVRWALEFALAQHLD 1101

Query: 330  PATFFTDAQVVSQCISNPSMVASIEHII*DCRALLDSIPGCYVRHI 193
                 +DA  V  CI+  +++ASIE I  DCR LL +     ++ +
Sbjct: 1102 NIIILSDAANVVNCIAKRTVLASIELIAQDCRDLLCNFSNVSIKFV 1147



 Score = 24.3 bits (51), Expect(2) = 6e-17
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 169  AHSLVGLAKRIGCNNWLG 116
            AH++  LAK +G   W+G
Sbjct: 1155 AHNVASLAKFVGSRTWIG 1172


>dbj|GAU35627.1| hypothetical protein TSUD_30450 [Trifolium subterraneum]
          Length = 1475

 Score =  661 bits (1705), Expect = 0.0
 Identities = 312/520 (60%), Positives = 384/520 (73%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK    K+IHGIK+AR APQ+SHLFFADDSLLFTRAN  EA  IL IL  YQ ASGQVVN
Sbjct: 764  HKAAREKEIHGIKVARSAPQLSHLFFADDSLLFTRANSHEATKILSILQVYQQASGQVVN 823

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
            LDKSEASFSRNVQ  +K  ICNMMG KAVEAQS+YLGFPIPFGRSKK +FS VM+RVW K
Sbjct: 824  LDKSEASFSRNVQNEDKTMICNMMGAKAVEAQSRYLGFPIPFGRSKKVVFSVVMDRVWKK 883

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            +KGWKE+ LS AG ETLIKAVAQ IPNYILSCY+MP+GCC DI+SMLAKFWWG++EE ++
Sbjct: 884  VKGWKERFLSRAGKETLIKAVAQVIPNYILSCYKMPVGCCKDINSMLAKFWWGSNEEKRK 943

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            IHWMSW K+SR K  GGMGFRG  +FN ALLGKHCWRL  G  SLLE++ KS+YYPN + 
Sbjct: 944  IHWMSWEKLSRAKNDGGMGFRGIEEFNKALLGKHCWRLATGGSSLLEKIFKSRYYPNNDF 1003

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            M A  G+QPSYAWRS+LSAR LV+ GG W IG+G   RIW D W+ D   ++ R++   L
Sbjct: 1004 MCANEGFQPSYAWRSILSARTLVEKGGLWRIGDGRKVRIWKDIWVPDMKIISYRNNNCPL 1063

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
             D+  + +LID  T+ W R +I   FD   A +I S PLS RLP+D LVW WEK+G +SV
Sbjct: 1064 SDDAFIMELIDGETKQWKRDVIYSCFDPCTAKQIISIPLSLRLPSDTLVWNWEKDGAYSV 1123

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRK 902
            ++AYH +C+   R+ P  S S  +K++KEIW+A VPN+++NF+W+LTK+ILPTR +L +K
Sbjct: 1124 RSAYHLICDEKERSLPGPSVSRKNKVWKEIWKAPVPNKIKNFMWRLTKNILPTRANLHKK 1183

Query: 901  GIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDS 722
            GI LD+ CPLC  E  +  HLFL  ++ KLTLFAS +G+  P+  D+  W+ +WLTC D+
Sbjct: 1184 GISLDLQCPLCHHEVESTNHLFLQCDLMKLTLFASHLGSHMPLQVDLYDWIFSWLTCHDT 1243

Query: 721  EGAQLFCILLWMVWKARNETVFNNRKPDLIRIANAALDFV 602
               QLFC LLW  W  RN  VF   K D + + +  + FV
Sbjct: 1244 LDTQLFCTLLWKFWATRNNVVFRGDKLDPVCLVDEVMSFV 1283



 Score = 91.3 bits (225), Expect(2) = 3e-16
 Identities = 54/144 (37%), Positives = 75/144 (52%), Gaps = 1/144 (0%)
 Frame = -3

Query: 606  LSEYNAANATRSHTPMQDQQLPRP-INSQQICAYVDAGSFNDRTTCWGLCVVNPEGNIIY 430
            + E+N AN  R            P I+      +VDAG   +  T WGL + N +    +
Sbjct: 1283 VQEFNEANPPRQGRVSLPLTTVTPSISRPSFSVFVDAGCNLNGPTVWGLVLKNHDRITTF 1342

Query: 429  SACKRDTISVEAVIAEAIGLRWGIQQILEQNIIPATFFTDAQVVSQCISNPSMVASIEHI 250
            SACK D I+VE V+AEA+G+RW IQ + EQ +     F+DA  V  CI N   + +IE +
Sbjct: 1343 SACKYDDIAVEPVMAEALGVRWAIQFVREQGLHSVCIFSDAANVVDCICNKVKLDAIEMV 1402

Query: 249  I*DCRALLDSIPGCYVRHIRCEGN 178
              DCR LL S+P   V  +R + N
Sbjct: 1403 AQDCRELLSSLPNVSVLFVRRDQN 1426



 Score = 25.0 bits (53), Expect(2) = 3e-16
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 190  VRRKPSV-AHSLVGLAKRIGCNNWLG 116
            VRR  ++ AH+L  LA+ +G   W+G
Sbjct: 1421 VRRDQNIDAHNLASLARLVGNRTWVG 1446


>dbj|GAU41525.1| hypothetical protein TSUD_140560 [Trifolium subterraneum]
          Length = 1610

 Score =  649 bits (1675), Expect = 0.0
 Identities = 311/520 (59%), Positives = 385/520 (74%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK V    IHGIKIAR APQISHLFFADD+LL  RAN  EAR+I+ IL  YQ ASGQVVN
Sbjct: 991  HKAVAANNIHGIKIARSAPQISHLFFADDTLLLARANQVEARIIMKILDEYQQASGQVVN 1050

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
            LDKSEASFSRNV       IC +M VKAVEAQS+YLGFP+PFGRSKK IF+ VM+RVW K
Sbjct: 1051 LDKSEASFSRNVPIEEVNTICELMKVKAVEAQSRYLGFPVPFGRSKKVIFAGVMDRVWKK 1110

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            LKGWKEK LS AG ETLIKAVAQAIPNYILSCY++P GCC+DIDSMLA+FWWG+ +E ++
Sbjct: 1111 LKGWKEKFLSRAGKETLIKAVAQAIPNYILSCYKLPEGCCHDIDSMLARFWWGSKDEERK 1170

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            IHWMSW ++S+ K KG MG +GF DFN ALLGKHCWRL     SLL +VLKS+Y+P  + 
Sbjct: 1171 IHWMSWVRLSKSKSKGRMGLKGFSDFNKALLGKHCWRLSTDPDSLLSKVLKSRYFPRTSF 1230

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            +EA +G+QPSY WRS+LSAR+++  G +W IGNG  TRIW D WL D + + SR++   L
Sbjct: 1231 LEAAIGFQPSYGWRSILSAREVLVQGSRWCIGNGRITRIWKDTWLPDFTKVRSRNATCTL 1290

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
             D+  VS+LID  TR WNR +I +FF   EA KI STPLS  LP DK++W WE++G +SV
Sbjct: 1291 SDDALVSELIDDQTRQWNRAIIFKFFTNDEALKIVSTPLSLNLPADKIIWHWERDGVYSV 1350

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRK 902
            + AYH LC+    N P  SSS +D ++K+IW+A +PN+V+NF+ +L K+ILPTR +L++K
Sbjct: 1351 RPAYHLLCDARDINLPGPSSSGDDSLWKKIWKAPIPNKVKNFMSRLAKNILPTRDNLKKK 1410

Query: 901  GIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDS 722
            GI LD +CPLC  +     HLF+  N+ KL LFAS +G  PP+  D+  WLL WL C D 
Sbjct: 1411 GISLDTSCPLCHNDSENAHHLFMHCNMLKLALFASPLGCHPPMNVDLNCWLLEWLNCSDK 1470

Query: 721  EGAQLFCILLWMVWKARNETVFNNRKPDLIRIANAALDFV 602
             GAQLFC +LW  W ARN+ VFN    + +R+A +AL FV
Sbjct: 1471 LGAQLFCTILWKFWFARNQYVFNGYPIEPLRLAQSALLFV 1510



 Score = 68.6 bits (166), Expect = 5e-08
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
 Frame = -3

Query: 606  LSEYNAAN----ATRSHTPMQDQQLPRPINSQQICAYVDAGSFNDRTTCWGLCVVNPEGN 439
            + E+N AN    +T   T + +     P    Q   +VDAG F++  T WGL + +  GN
Sbjct: 1510 VQEFNEANNLSRSTHVATRVHNTNSASPC---QFSMFVDAGCFSNARTGWGLVLKDQRGN 1566

Query: 438  IIYSACKRDTISVEAVIAEAIGLRWGIQQILEQNIIPATFFTDA 307
            + ++AC+R+ I V  ++AEA+ LRW IQ  L Q I   +F  DA
Sbjct: 1567 VTWNACRREDIEVTPILAEALELRWAIQSALSQGIQSISFNCDA 1610


>gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]
          Length = 894

 Score =  604 bits (1558), Expect = 0.0
 Identities = 283/520 (54%), Positives = 372/520 (71%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK     +IHG+++AR AP+I+HL FADDSLLF RAN +EA VI++IL TYQ ASGQ+V+
Sbjct: 252  HKGARNNKIHGLQVARNAPKITHLLFADDSLLFARANQKEAEVIINILQTYQTASGQLVS 311

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
            L+KSE SFSRN+ TI K  ICN + VKAV   SKYLG P+ FGRSKK IF+ V ER+W K
Sbjct: 312  LEKSEVSFSRNLPTIEKNMICNKIDVKAVTNHSKYLGLPVIFGRSKKEIFASVQERIWKK 371

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            +KGWKEKCLS AG ETLIK+VAQAIPNYI+SCY++P GCC++I++MLAKFWWGT E+ ++
Sbjct: 372  IKGWKEKCLSRAGKETLIKSVAQAIPNYIMSCYKLPTGCCDNIEAMLAKFWWGTTEKQRK 431

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            IHW+SW K+ + K KGG+GFR F DFN ALLGK CWRL+    SLL +V KS+Y+P    
Sbjct: 432  IHWVSWNKLGKAKSKGGLGFRSFEDFNKALLGKQCWRLLQNPDSLLAKVFKSRYFPRSKF 491

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            M+A +GYQPSYAWRS+ ++R+++  G +W+IGNG    IW D+WL         S V+NL
Sbjct: 492  MDANVGYQPSYAWRSLCNSREVIDVGARWLIGNGKDVHIWNDKWLPAQDKFKVWSPVSNL 551

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
              N  VS LI+  T+ W++ L+   F++ EA +I + PLS RLP DKL+W WEKNG+FSV
Sbjct: 552  APNAMVSDLINLETKMWDKNLVQNCFNSFEAEQILNIPLSWRLPADKLIWHWEKNGEFSV 611

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRK 902
            ++AYH L EI  +N P +SSS +  ++K IW+ KVPN ++NFLW+L K+ILPTR+ L +K
Sbjct: 612  RSAYHMLSEIRNQNSPEASSSRDHLLWKAIWKVKVPNCIKNFLWRLAKAILPTRSRLEKK 671

Query: 901  GIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDS 722
            GI LD TCPLC  +    EHLF+   ++K   F+S +G   P    +I W+  WL+  D 
Sbjct: 672  GITLDTTCPLCFNDIECNEHLFMHCPLSKQVWFSSPLGLHAPNNVGLISWMQLWLSNPDK 731

Query: 721  EGAQLFCILLWMVWKARNETVFNNRKPDLIRIANAALDFV 602
              +QLF   LWM+WK RN+ +F N K   I +A A+ DFV
Sbjct: 732  LASQLFSTTLWMIWKGRNKLIFKNVKFCPIYVAAASSDFV 771


>gb|PNY15111.1| ribonuclease H [Trifolium pratense]
          Length = 1334

 Score =  608 bits (1568), Expect = 0.0
 Identities = 293/519 (56%), Positives = 382/519 (73%)
 Frame = -2

Query: 2158 KLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVNL 1979
            K  E   +HGI+IARQAP+ISHLFFADDSLLF RA+  EA VIL++L  YQ ASGQVVNL
Sbjct: 632  KQAETGSMHGIQIARQAPKISHLFFADDSLLFARASAAEAGVILNVLAEYQKASGQVVNL 691

Query: 1978 DKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMKL 1799
            DKSE SFS+NV+  +K  I N MGVK V+  SKYLG P+ FGRSKK IFSFV++RVW KL
Sbjct: 692  DKSEVSFSQNVRNEDKDMIRNRMGVKTVDTHSKYLGLPVVFGRSKKIIFSFVIDRVWKKL 751

Query: 1798 KGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKRI 1619
            KGWKEKCLS AG E LIKAVAQAIPNYI+ CY++P  CC +I++MLAKFWWG+    ++I
Sbjct: 752  KGWKEKCLSRAGKEILIKAVAQAIPNYIMGCYKLPNSCCQEIETMLAKFWWGSKGGERKI 811

Query: 1618 HWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNCM 1439
            HWMSW ++S+ K  GGMGFRG  +FN ALLGKHCWRL+ G+ SL+ R+ KS+Y+P  + +
Sbjct: 812  HWMSWERLSKTKKDGGMGFRGINNFNKALLGKHCWRLMTGEESLMGRIFKSRYFPRTSFL 871

Query: 1438 EAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNLE 1259
            EAK+GYQPSYAWRS+ SA  +++ G +W IGNG + +I  DRWL +       S    LE
Sbjct: 872  EAKIGYQPSYAWRSIQSATDVMKLGTRWRIGNGESVKIREDRWLPNQVGFKVWSRGEELE 931

Query: 1258 DNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSVK 1079
            +   VS LID  T+ WNRQL+ Q F   EA +I S P+S RLP DK++W +E++G++SV+
Sbjct: 932  NGALVSALIDPDTKQWNRQLVVQTFYPDEAKQILSIPISQRLPADKIIWHYERDGEYSVR 991

Query: 1078 TAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRKG 899
            +A+H L + N+R+  +SS    + +++EIW+A VPNRVRNFLW+L K+ILPTR +L RKG
Sbjct: 992  SAHHLLKQHNSRDVAASSGQQMNNLWREIWKAPVPNRVRNFLWRLGKNILPTRANLVRKG 1051

Query: 898  IQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDSE 719
            +Q++  CP C + P T +HLFL  ++T+LT FAS++GA+ P    +  WLL  LTC D+ 
Sbjct: 1052 VQIENLCPQCHSAPETIDHLFLHCHLTQLTWFASQLGARVPQSVPVHIWLLQGLTCDDTR 1111

Query: 718  GAQLFCILLWMVWKARNETVFNNRKPDLIRIANAALDFV 602
            GAQLFC+L+W +W ARN  VFNN+  D I IA  A+ F+
Sbjct: 1112 GAQLFCVLMWKIWNARNNLVFNNKLVDPIAIAQEAMYFM 1150



 Score =  104 bits (259), Expect(2) = 1e-19
 Identities = 52/142 (36%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
 Frame = -3

Query: 612  WILSEYNAANATRSHTPMQDQQLP-RPINSQQICAYVDAGSFNDRTTCWGLCVVNPEGNI 436
            + + E + +    + TPMQD  L  +P+ S     YVDAG F+   T WG+ + N  G +
Sbjct: 1148 YFMQELSPSPHEHNATPMQDAVLAAQPMPSAPHVFYVDAGCFSGNATGWGMVIYNQSGRV 1207

Query: 435  IYSACKRDTISVEAVIAEAIGLRWGIQQILEQNIIPATFFTDAQVVSQCISNPSMVASIE 256
            + SAC+++ I VE V+AEAIG+RW +Q+ +E N+      +DA  V  CI++   VA I+
Sbjct: 1208 VLSACRKELIDVEPVLAEAIGVRWCLQKAIELNMTDIVIVSDAATVVSCINSNKHVAVID 1267

Query: 255  HII*DCRALLDSIPGCYVRHIR 190
             +I DC  L++ +    V H+R
Sbjct: 1268 LVIQDCNLLIEQLDSVVVTHVR 1289



 Score = 23.1 bits (48), Expect(2) = 1e-19
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 172  VAHSLVGLAKRIGCNNWLG 116
            VAH L G +  +G   W+G
Sbjct: 1295 VAHGLAGFSNVVGTKLWMG 1313


>gb|PNX95041.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1348

 Score =  592 bits (1526), Expect = 0.0
 Identities = 290/520 (55%), Positives = 363/520 (69%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK V+ K+IHGIK+AR+APQISHL FADDSLLF RAN  EA VIL  L  YQ ASGQVVN
Sbjct: 745  HKEVQSKRIHGIKVARRAPQISHLQFADDSLLFARANQHEANVILSTLAAYQRASGQVVN 804

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
            +DKSEASFSRNV   + Q ICNMMG K V +Q++YLG P+ FGRSKK IFSFV +RVW K
Sbjct: 805  MDKSEASFSRNVLEADSQFICNMMGAKTVASQNRYLGLPVIFGRSKKVIFSFVKDRVWKK 864

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            LKGWKEK LS AG E LIKAVAQAIPNY++SC+++P  CC +I+SMLA FWWG+ E  ++
Sbjct: 865  LKGWKEKSLSRAGKEVLIKAVAQAIPNYVMSCFKIPNDCCKEIESMLANFWWGSKEGGQK 924

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            +HWMSW +MS  K KGGMGFRGF +FN ALLGK CWRL++ + SLL R+ KS+YYPN + 
Sbjct: 925  MHWMSWDRMSSSKMKGGMGFRGFSNFNKALLGKQCWRLISEEESLLGRIFKSRYYPNHSF 984

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            +EA  G+QPSYAWRS+LSAR+ VQ G +WI+GNG   RIW D WL   S     S ++ L
Sbjct: 985  IEASSGFQPSYAWRSILSAREHVQKGSRWIVGNGRKVRIWKDNWLPTLSNFKVCSPISFL 1044

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
            +    VS LID   R W+  L++  F+  EA  I S PLS     DKLVW  EKNG +SV
Sbjct: 1045 DGEATVSALIDEDLRKWDLNLVNSIFNNFEAGIISSMPLSFSQHEDKLVWTGEKNGGYSV 1104

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRK 902
            K+AYH LC  +    P SSSS     +K +W   +PNR++NF+W+L K+ILPTR +L R+
Sbjct: 1105 KSAYHLLCNESEVRHPESSSSAAGSFWKHLWAIPLPNRIKNFMWRLAKNILPTRGNLLRR 1164

Query: 901  GIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDS 722
             + LD  CPLC  +  + EHLFL   + K    AS +G +PP  +D++ WL  WL C++ 
Sbjct: 1165 RVPLDPVCPLCFNDLESTEHLFLHCPLIKQVWLASPLGVRPPPHSDLVLWLTQWLNCKEP 1224

Query: 721  EGAQLFCILLWMVWKARNETVFNNRKPDLIRIANAALDFV 602
               QLFC  LW +W  RN+T+F N   D IR++ AA +FV
Sbjct: 1225 FAIQLFCTTLWKIWFFRNQTIFKNLAFDPIRVSCAAQNFV 1264


>dbj|GAU39028.1| hypothetical protein TSUD_59840 [Trifolium subterraneum]
          Length = 1626

 Score =  594 bits (1532), Expect = 0.0
 Identities = 280/520 (53%), Positives = 368/520 (70%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK     +IHGI++AR AP+I+HL FADDSLLF RAN +E+ VIL+IL TYQ ASGQ+V+
Sbjct: 925  HKGARNNEIHGIQVARNAPKITHLLFADDSLLFARANQKESEVILNILQTYQTASGQLVS 984

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
            L+KSE SFSRN+ TI K  ICN + VKAV + SKYL  P+ FGRSKK IF+ V ER+W K
Sbjct: 985  LEKSEVSFSRNLPTIEKNMICNKIDVKAVTSHSKYLVLPVIFGRSKKEIFANVQERIWKK 1044

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            +KGWKEKCLS AG ETLIK+VAQAIPNY++SCY++P GCC++I++MLAKFWWGT E+ ++
Sbjct: 1045 IKGWKEKCLSRAGKETLIKSVAQAIPNYLMSCYKLPTGCCDNIEAMLAKFWWGTTEKQRK 1104

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            IHW+SW K+ + K KGG+GFR F DFN ALLGK CWRL+    SLL +V KS+Y+P  N 
Sbjct: 1105 IHWVSWNKLGKAKSKGGLGFRSFEDFNKALLGKQCWRLLQNPDSLLAKVFKSRYFPRSNF 1164

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            M+A +GYQPSYAWRS+ +AR+++  G +W+IGNG    IW D+WL +       S V+NL
Sbjct: 1165 MDASVGYQPSYAWRSLCNAREVIDMGARWLIGNGQDVHIWNDKWLPEQDKFKVWSPVSNL 1224

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
              N  VS LI+  T+ W++ LI   F   EA +I + P+S RLP DKL+W WEKNG+FSV
Sbjct: 1225 VPNAMVSDLINPVTKAWDKNLILNCFSPFEAEQILNIPISWRLPADKLIWHWEKNGEFSV 1284

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRK 902
            ++AYH L E   +N P +SSS +  ++K IW+  VPN ++NFLW++ K+ILPTR  L +K
Sbjct: 1285 RSAYHMLSEDRNKNSPEASSSRDQLLWKTIWKVNVPNCIKNFLWRVAKAILPTRGRLEKK 1344

Query: 901  GIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDS 722
            GI LD TCPLC  +    EHLF+   ++K   F+S +G   P    +  W+  WL+  D 
Sbjct: 1345 GITLDTTCPLCFNDIECNEHLFMQCPLSKQVWFSSPLGLHAPNNFSLNSWMQLWLSNPDK 1404

Query: 721  EGAQLFCILLWMVWKARNETVFNNRKPDLIRIANAALDFV 602
              +QLF   LWM+WK RN+ +F N K   I +A A+ DFV
Sbjct: 1405 LASQLFSTTLWMIWKGRNKLIFKNEKFCPIYVAAASSDFV 1444



 Score = 62.4 bits (150), Expect(2) = 2e-08
 Identities = 37/114 (32%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
 Frame = -3

Query: 507  VDAGSFNDRTTCWGLCVVNPEGNIIYSACKRDTISVEAVIAEAIGLRWGIQQIL----EQ 340
            +DAG F++ TT WG+ + N  G + ++A   + I V + +AE + LRW +Q I      +
Sbjct: 1478 IDAGCFSNGTTGWGMIMRNHLGMVEFAATHLEKIKVSSTLAETMALRWCLQWIQASTHHE 1537

Query: 339  NIIPATFFTDAQVVSQCISNPSMVASIEHII*DCRALLDSIPGCYVRHIRCEGN 178
            +II     +D++V  +C++       +E+II DCR  L S+P   V  +R   N
Sbjct: 1538 HII---IESDSEVSVKCLNGSICDVLVENIIQDCRNFLSSLPNVIVVFVRRSKN 1588



 Score = 27.3 bits (59), Expect(2) = 2e-08
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 190  VRRKPSVA-HSLVGLAKRIGCNNWLG 116
            VRR  +VA H L  LA+ +G  +W+G
Sbjct: 1583 VRRSKNVATHELASLARTVGAKSWVG 1608


>gb|PNX80752.1| ribonuclease H, partial [Trifolium pratense]
          Length = 696

 Score =  563 bits (1452), Expect = 0.0
 Identities = 272/472 (57%), Positives = 346/472 (73%)
 Frame = -2

Query: 2137 IHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVNLDKSEASF 1958
            IHGIKIARQAP+ISHL FADDSLLF RA+  EA VIL +L  YQ ASGQVVNLDKSE SF
Sbjct: 225  IHGIKIARQAPKISHLLFADDSLLFARASSTEADVILSVLAEYQQASGQVVNLDKSEVSF 284

Query: 1957 SRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMKLKGWKEKC 1778
            S+NV+   K+ I N MGVK V+  SKYLG P+ FGRSKK IFS V++RVW K+KGWKE  
Sbjct: 285  SQNVRNEEKEMIRNRMGVKTVDNHSKYLGLPVVFGRSKKLIFSLVIDRVWKKVKGWKENY 344

Query: 1777 LSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKRIHWMSWGK 1598
            LS AG E LIKAVAQAIPNYI+SCY++P  CC +I+SMLAKFWWG+ E  ++IHWMSW +
Sbjct: 345  LSRAGKEILIKAVAQAIPNYIMSCYKLPESCCQEIESMLAKFWWGSKEGKRKIHWMSWER 404

Query: 1597 MSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNCMEAKLGYQ 1418
            +S+ K  GGMGFRG  +FN ALLGKHCWRL  G+ SL+ RV KS+YYP  + MEAK+GYQ
Sbjct: 405  LSKSKKGGGMGFRGISNFNSALLGKHCWRLTTGEESLMGRVFKSRYYPRASFMEAKIGYQ 464

Query: 1417 PSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNLEDNECVSK 1238
            PSYAWRS+ SA++++  G +W IGNG   +I  D+WL +       S  + LE++  VS 
Sbjct: 465  PSYAWRSIQSAKEVIILGSRWRIGNGEKVKICKDKWLPNQVGFKVWSRCDELEEDALVST 524

Query: 1237 LIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSVKTAYHSLC 1058
            LID  T+ W R L+S  F  HEA +I S P+SPRLP+DK++W +E+NG++SV++A+H L 
Sbjct: 525  LIDPDTKQWKRDLVSHIFFPHEAKQILSLPISPRLPSDKIIWHFERNGEYSVRSAHHLLK 584

Query: 1057 EINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRKGIQLDVTC 878
            + ++RN   +S    D +++EIW A VPNRVRNFLW+L K+ILPTR +L RKG+Q++  C
Sbjct: 585  QHSSRNAAGTSGQQTDILWREIWXAPVPNRVRNFLWRLGKNILPTRANLSRKGVQVENLC 644

Query: 877  PLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDS 722
            P C+  P T +HLFL   + +LT FAS+IGA  P    +  WLL  LTC D+
Sbjct: 645  PQCNNAPETIDHLFLHCQLAQLTWFASQIGAHAPQNLPLNSWLLQGLTCEDT 696


>dbj|GAU30026.1| hypothetical protein TSUD_161120 [Trifolium subterraneum]
          Length = 1957

 Score =  582 bits (1501), Expect = 0.0
 Identities = 275/519 (52%), Positives = 357/519 (68%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK V    IHGI++AR AP+I+HL FADDSL F RAN  EA  I+  L+TYQ ASGQ ++
Sbjct: 1003 HKEVHNNNIHGIQVARGAPKITHLLFADDSLFFARANHAEAESIIRALNTYQRASGQTIS 1062

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
            L+KSE S+SRN+  I K  ICN +GVKAV + S+YLG P+ FGRSKK IFSFV +RVW K
Sbjct: 1063 LEKSEVSYSRNMLEIEKNLICNKIGVKAVTSHSRYLGLPVLFGRSKKEIFSFVKDRVWRK 1122

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            +KGWKEKCLS AG ETLIKAVAQAIPNYI+SCY++PIGCC DI+ MLAKFWWGTDE  ++
Sbjct: 1123 IKGWKEKCLSRAGKETLIKAVAQAIPNYIMSCYKIPIGCCRDIEGMLAKFWWGTDERQRK 1182

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            +HW+SW  + + K  GGMGFRGF +FN ALLGK CWR++    SL+ +V KS+Y+P  N 
Sbjct: 1183 VHWLSWENLGKIKNSGGMGFRGFEEFNQALLGKQCWRIIQNQESLIAKVFKSRYFPRTNF 1242

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            MEA++GYQPSYAWRSM SA+K ++ G +W IGNG   RIW D WL + +     S VN L
Sbjct: 1243 MEAQIGYQPSYAWRSMFSAKKTIEMGLRWTIGNGQNVRIWKDSWLPNQAGFKVCSPVNVL 1302

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
             D+  VS+LID  +R WN  L+   F   E  +I + PLS RLP+D+ +W WE++G +SV
Sbjct: 1303 ADDAYVSQLIDPISRSWNMNLVRNIFSQFETQQILNIPLSWRLPDDRRIWHWERDGNYSV 1362

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRK 902
            ++A+H + E  + + P +SSS + +I+K IW+ K P  V+NFLW+L + ILPTR  L+RK
Sbjct: 1363 RSAHHMIKEAESASTPETSSSNSQQIWKAIWKIKAPQSVKNFLWRLARDILPTRCRLQRK 1422

Query: 901  GIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFASRIGAQPPVLADIIGWLLNWLTCRDS 722
            G+ LD  CPLC       EHLF+   + + T F+S +G   P    +  W+  WL  ++ 
Sbjct: 1423 GVILDTICPLCFEAEENSEHLFMKCRLAQQTWFSSCLGLHVPSQMSLKNWMCEWLISKNQ 1482

Query: 721  EGAQLFCILLWMVWKARNETVFNNRKPDLIRIANAALDF 605
              +QLF I L  +WK RN+ VF N   D   IA AA DF
Sbjct: 1483 SASQLFGITLSKIWKGRNQVVFQNALFDPCHIAIAAADF 1521



 Score = 69.3 bits (168), Expect(2) = 2e-12
 Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 1/107 (0%)
 Frame = -3

Query: 507  VDAGSFNDRTTCWGLCVVNPEGNIIYSACKRDTISVEAVIAEAIGLRWGIQQILEQNIIP 328
            VDAG FND    +G+ V +  GN+ ++A K +       +AEA+ LRW +  IL  N + 
Sbjct: 1557 VDAGCFNDGLLGFGMVVRDNLGNVCFAATKLEKKQASPTLAEALALRWCLHWILSSNQVG 1616

Query: 327  ATFF-TDAQVVSQCISNPSMVASIEHII*DCRALLDSIPGCYVRHIR 190
                 TD++VV +C+   S ++ IE+II DC  ++ ++  C V  IR
Sbjct: 1617 HFIVETDSEVVVKCLQGVSSLSEIENIILDCSDIMSNLSNCSVVFIR 1663



 Score = 34.3 bits (77), Expect(2) = 2e-12
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 205  CETY*VRR-KPSVAHSLVGLAKRIGCNNWLG 116
            C    +RR K  VAHSLVG+AK +G  +W+G
Sbjct: 1657 CSVVFIRRCKNIVAHSLVGVAKHVGSRSWVG 1687


>gb|PNX92710.1| ribonuclease H [Trifolium pratense]
          Length = 1052

 Score =  543 bits (1399), Expect = e-177
 Identities = 258/403 (64%), Positives = 310/403 (76%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK    K+IHGIK+AR APQ+SHLFFADDSLLFTRAN  EA  IL IL  YQ ASGQVVN
Sbjct: 631  HKAAREKEIHGIKVARSAPQLSHLFFADDSLLFTRANSHEATKILSILQVYQQASGQVVN 690

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
            LDKSEASFSRNVQ  +K  ICNMMG KAVEAQS+YLGFPIPFGRSKK +FS VM+RVW K
Sbjct: 691  LDKSEASFSRNVQNEDKNMICNMMGAKAVEAQSRYLGFPIPFGRSKKVVFSVVMDRVWKK 750

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            +KGWKE+ LS AG ETLIKAVAQAIPNYILSCY+MP+GCC DI+SMLAKFWWG++EE ++
Sbjct: 751  VKGWKERFLSRAGKETLIKAVAQAIPNYILSCYKMPVGCCKDINSMLAKFWWGSNEEKRK 810

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            IHWMSW ++SR K  GGMGFRG  +FN ALLGKHCWRL  G  SLLE++ KS+YYP  + 
Sbjct: 811  IHWMSWERLSRAKNDGGMGFRGIEEFNKALLGKHCWRLATGGSSLLEKIFKSRYYPKSDF 870

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            M A  GYQPSYAWRS+LSAR LV+ GG W IG+G   RIW D W+ D   ++SR++   L
Sbjct: 871  MCANEGYQPSYAWRSILSARTLVEKGGLWRIGDGRKVRIWKDIWMPDMKIISSRNNNCPL 930

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
             D+  V  LID  T+ W R +I   FD+  A +I S PLS RLP+D LVW WEK+G +SV
Sbjct: 931  SDDALVMDLIDVDTKQWKRDVIYSCFDSGTAKQIISIPLSLRLPSDTLVWNWEKDGAYSV 990

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFL 953
            ++AYH +C+   R+ P  S +  +K++KEIW+A VPN+V+NF+
Sbjct: 991  RSAYHVICDEKERSLPGPSVTRKNKVWKEIWKAPVPNKVKNFI 1033


>gb|PNY01158.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1068

 Score =  525 bits (1353), Expect = e-170
 Identities = 244/443 (55%), Positives = 322/443 (72%)
 Frame = -2

Query: 2161 HKLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVN 1982
            HK  + + IHGI++AR AP+I+HL FADDSLLF RAN  EA  I+ +L+ YQLASGQ+V+
Sbjct: 623  HKEAQSQAIHGIQVARNAPKITHLLFADDSLLFARANQNEANTIIQVLNKYQLASGQMVS 682

Query: 1981 LDKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMK 1802
             +KSE SFSRNV  I K  ICN + VKAV + S+YLG P+ FGRSKK +F+FV +R+W K
Sbjct: 683  YEKSEVSFSRNVPDIEKNIICNKIEVKAVTSHSRYLGLPVIFGRSKKEVFAFVQDRIWKK 742

Query: 1801 LKGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKR 1622
            +KGWKEKCLS AG ETLIKAVAQAIP+YI+SCY++P G C +I+SML+KFWWG+ ++  +
Sbjct: 743  VKGWKEKCLSKAGKETLIKAVAQAIPSYIMSCYKIPEGSCANIESMLSKFWWGSSDQKNK 802

Query: 1621 IHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNC 1442
            IHWMSW ++ R K KGG+GFRGF DFN ALLGK CWRL++ + SLL RV KSKY+P    
Sbjct: 803  IHWMSWDRLGRAKNKGGLGFRGFSDFNKALLGKQCWRLMSNEDSLLSRVFKSKYFPRSCF 862

Query: 1441 MEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNL 1262
            +++K GYQPSYAWRS+ +A+ ++  G +W IGNG   +IW D WL + S     S V NL
Sbjct: 863  LKSKCGYQPSYAWRSLFNAKSVIDLGLRWTIGNGQQVKIWKDPWLPELSSFKVWSPVCNL 922

Query: 1261 EDNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSV 1082
            +++  V++LID   + W R+L+   F+  EA +I + PLS RLP+DK VW WE+NG +SV
Sbjct: 923  DEDAVVAELIDVDLKKWKRELVMNSFNEFEANQILNIPLSWRLPDDKKVWSWERNGNYSV 982

Query: 1081 KTAYHSLCEINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRK 902
            ++AYH L E   R+ P  S++ N  I+K IW+ + P RV+NFLW++ K ILPTR  L +K
Sbjct: 983  RSAYHLLKEETLRDIPEPSTAGNTGIWKSIWKVQAPQRVKNFLWRVVKRILPTRCRLEQK 1042

Query: 901  GIQLDVTCPLCSAEPGTPEHLFL 833
            G+ LD  CPLC     T EHLF+
Sbjct: 1043 GVALDPICPLCHDGEETQEHLFM 1065


>dbj|GAU21787.1| hypothetical protein TSUD_329120, partial [Trifolium subterraneum]
          Length = 734

 Score =  493 bits (1270), Expect = e-161
 Identities = 248/434 (57%), Positives = 300/434 (69%)
 Frame = -2

Query: 2062 TRANCEEARVILDILHTYQLASGQVVNLDKSEASFSRNVQTINKQNICNMMGVKAVEAQS 1883
            +RA+  EA  IL+IL TY+ ASGQVVNLDKSEASFSRNV+  +K  ICNMMG KAVEAQS
Sbjct: 1    SRASSHEASKILNILATYEQASGQVVNLDKSEASFSRNVRNEDKDMICNMMGAKAVEAQS 60

Query: 1882 KYLGFPIPFGRSKKAIFSFVMERVWMKLKGWKEKCLSGAGTETLIKAVAQAIPNYILSCY 1703
            +YLGFPIPFG+SKKA+FSFVM+RVW K+KGWKE+ LS AG ETLIKAVAQAIPNYILS Y
Sbjct: 61   RYLGFPIPFGKSKKAVFSFVMDRVWKKVKGWKERFLSRAGKETLIKAVAQAIPNYILSYY 120

Query: 1702 EMPIGCCNDIDSMLAKFWWGTDEEHKRIHWMSWGKMSRPKCKGGMGFRGFRDFNIALLGK 1523
            +MP+GCC DIDS+LAKFWWG++EE ++IHWMSW ++S+ K  GGMGFRG  DFN ALLGK
Sbjct: 121  KMPVGCCKDIDSLLAKFWWGSNEEKRKIHWMSWERLSKAKLDGGMGFRGMEDFNKALLGK 180

Query: 1522 HCWRLVNGDCSLLERVLKSKYYPNGNCMEAKLGYQPSYAWRSMLSARKLVQTGGKWIIGN 1343
            HCWRLV G+ SLLE+++KS+YYP G  + AK GYQPSYAWRS+LSAR +V  GG W IGN
Sbjct: 181  HCWRLVTGESSLLEKIMKSRYYPRGIFLCAKEGYQPSYAWRSILSARDIVTKGGVWKIGN 240

Query: 1342 GSTTRIWGDRWLSDGSFLTSRSSVNNLEDNECVSKLIDFGTRDWNRQLISQFFDTHEATK 1163
            G                   R    N+                                 
Sbjct: 241  G-------------------RKVAQNI--------------------------------- 248

Query: 1162 IFSTPLSPRLPNDKLVWQWEKNGQFSVKTAYHSLCEINARNWPSSSSSINDKIYKEIWRA 983
              S P+S RLP D L+W WEK+G +SV++AYH LC+  AR  P  S     K++KEIWRA
Sbjct: 249  -ISLPISFRLPQDTLIWNWEKDGVYSVRSAYHLLCDEKARLQPGPSCPKRSKLWKEIWRA 307

Query: 982  KVPNRVRNFLWKLTKSILPTRTSLRRKGIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLF 803
             VPN+V+NF+W+L K+ILPTRT+L  KGI+LD+ CPLC  E  + +HLFL  +I KLTLF
Sbjct: 308  PVPNKVKNFIWRLAKNILPTRTNLHNKGIKLDLQCPLCFREEESSQHLFLKCDIFKLTLF 367

Query: 802  ASRIGAQPPVLADI 761
            AS +G    V   I
Sbjct: 368  ASHLGRNASVFNGI 381



 Score = 78.2 bits (191), Expect(2) = 1e-12
 Identities = 37/84 (44%), Positives = 55/84 (65%)
 Frame = -3

Query: 477 TCWGLCVVNPEGNIIYSACKRDTISVEAVIAEAIGLRWGIQQILEQNIIPATFFTDAQVV 298
           T WGL + N +G  I+SACKR+ ISV+ ++AEA+G+RW +Q +++Q I   +  +DA  V
Sbjct: 411 TVWGLVLRNSDGETIFSACKREEISVDPLMAEALGVRWALQLVVDQGINSVSIHSDAANV 470

Query: 297 SQCISNPSMVASIEHII*DCRALL 226
             CI+  S  A+I  I  DCR L+
Sbjct: 471 VNCINRKSSFAAINLIAEDCRNLM 494



 Score = 25.8 bits (55), Expect(2) = 1e-12
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 208 LCETY*VRRKPSVAHSLVGLAKRIGCNNWLG 116
           +C+ +  R + S AH+L  LA+ +G   W G
Sbjct: 500 VCDLFVSRTQNSDAHNLASLARIMGNRTWQG 530


>gb|PNY16050.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1066

 Score =  410 bits (1053), Expect = e-126
 Identities = 204/502 (40%), Positives = 301/502 (59%), Gaps = 4/502 (0%)
 Frame = -2

Query: 2158 KLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVNL 1979
            K  + K IHG+ I + AP ISHLFFADDSL+F R+N +E   I +I+ TYQ ASGQ+VNL
Sbjct: 565  KAQKEKLIHGVTICQGAPDISHLFFADDSLIFCRSNTKEVSTIQNIIQTYQKASGQLVNL 624

Query: 1978 DKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMKL 1799
             KSE  FS+ V    KQ++ N++ ++     SKYLG PI  GRSKK IF+F+ E++W KL
Sbjct: 625  AKSEMVFSKGVPNNTKQDVSNILPMQIQNQFSKYLGMPIALGRSKKQIFNFIQEKIWKKL 684

Query: 1798 KGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKRI 1619
            KGWKEK LS AG  TLIKAVAQAIP Y++S + MP G C+ ++ M+  FWWG+  +H++I
Sbjct: 685  KGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLMPKGVCDQLEQMICNFWWGSSTDHRKI 744

Query: 1618 HWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNCM 1439
            HW+ W K+   K +GGMGFR  R FN ALL K  WRL+    SL+ ++LK+KYYP G+ +
Sbjct: 745  HWIKWSKVCTQKKQGGMGFRNLRAFNEALLAKQGWRLITQPNSLVTQILKAKYYPKGDFL 804

Query: 1438 EAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNLE 1259
             A      SY WRS+L A  +++ G  W IG+G    IW D W+      T  SS  N  
Sbjct: 805  TATHKQNMSYTWRSILQASWVIKKGSYWTIGSGQDINIWEDNWIQQKGNSTGTSSKPNNC 864

Query: 1258 DNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSVK 1079
                V +L+D    +WN  +I+Q F+ +EA  I   P+  +   D L W   ++G +SVK
Sbjct: 865  GFTKVKELMDNNYNEWNASIINQVFNPYEAHMILQIPILDKTQPDTLTWDGTRDGTYSVK 924

Query: 1078 TAYHSLCE--INARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRR 905
            + YH++ +   N+ +  ++SS+ + +I+K +W+  VP +  + +W+  ++ +P + SL +
Sbjct: 925  SGYHAIIDWANNSNSNNATSSNCSMEIWKVLWKLNVPPKHSHLIWRSLRNAIPVKGSLFK 984

Query: 904  KGIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFAS--RIGAQPPVLADIIGWLLNWLTC 731
            +GI+ D  CP C     T +H+F+D   TK   FAS   +      L +   W+   +  
Sbjct: 985  RGIRCDPLCPRCLDHVETIQHVFMDCEWTKKVWFASPLTLNLNLNYLTEFYDWITYMINN 1044

Query: 730  RDSEGAQLFCILLWMVWKARNE 665
             D E  +    +++ +W ARN+
Sbjct: 1045 TDKECMEKIVAIIYEIWNARNQ 1066


>gb|PNY02790.1| ribonuclease H, partial [Trifolium pratense]
          Length = 916

 Score =  403 bits (1036), Expect = e-125
 Identities = 203/508 (39%), Positives = 301/508 (59%), Gaps = 4/508 (0%)
 Frame = -2

Query: 2158 KLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVNL 1979
            K  + K IHG+ I  +AP+ISHLFFADDSL+F RAN +E   I +I+  YQ ASGQ+VN 
Sbjct: 300  KAQQDKLIHGVMICHEAPEISHLFFADDSLVFCRANTKEVSTIQNIIQIYQNASGQLVNF 359

Query: 1978 DKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMKL 1799
             KSE  FS+ V    +++I N++ +K +   SKYLG P+  GRSKK IF+F+ E++W KL
Sbjct: 360  SKSEMVFSKGVSNQIQRDISNILPMKILNQFSKYLGMPVALGRSKKQIFNFIQEKIWKKL 419

Query: 1798 KGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKRI 1619
            KGWKEK LS AG  TLIKAVAQAIP Y++S + +P G C+ ++ M+  FWWG+  +H++I
Sbjct: 420  KGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGVCDQLEKMICNFWWGSSTDHRKI 479

Query: 1618 HWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNCM 1439
            HW+ W  + + K +GG+GFR  R FN ALL K  WRL+    SL+ ++LK+KYYP G  +
Sbjct: 480  HWIKWSTVCKHKMEGGIGFRDLRAFNEALLAKQGWRLITQPDSLVAKILKAKYYPKGEFL 539

Query: 1438 EAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNLE 1259
            +A    Q SY W+S+L A  +++ G  W IG+G    IW D W+      TS  S  N  
Sbjct: 540  KASHKQQMSYTWKSILQASWVIKRGSYWTIGSGQGINIWEDNWIQQKGNPTSTISKPNNC 599

Query: 1258 DNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSVK 1079
                V +L+D    DWN  +I+Q F+ +EA  I   P+  +  +D L W   ++G +SVK
Sbjct: 600  GLIKVKELMDDNYNDWNVTIINQIFNPYEAHMIQQIPILDKTQSDILTWDGTRDGHYSVK 659

Query: 1078 TAYHSLCE--INARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRR 905
            + Y ++ E   N+ N  ++SS+ + +I+K +W+  VP +  +F+W+   + +P +  L +
Sbjct: 660  SGYQAIMEWAKNSDNNNATSSNSSMEIWKVLWKLNVPPKHSHFIWRCLSNAIPVKGKLFK 719

Query: 904  KGIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFAS--RIGAQPPVLADIIGWLLNWLTC 731
            KGI+ D  CP C     T +H+FL+ +  K   FAS   +      L +   W    +  
Sbjct: 720  KGIRCDPLCPRCLNHVETIQHVFLECDWAKKVWFASPLTLNLNSNQLTEFYDWFNYMIIN 779

Query: 730  RDSEGAQLFCILLWMVWKARNETVFNNR 647
             D E  +    + + +W  RN  VF N+
Sbjct: 780  TDKECMEKIVAITYEIWNTRNLLVFQNK 807


>gb|PNX98065.1| ribonuclease H [Trifolium pratense]
          Length = 1011

 Score =  403 bits (1036), Expect = e-124
 Identities = 203/508 (39%), Positives = 301/508 (59%), Gaps = 4/508 (0%)
 Frame = -2

Query: 2158 KLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVNL 1979
            K  + K IHG+ I  +AP+ISHLFFADDSL+F RAN +E   I +I+  YQ ASGQ+VN 
Sbjct: 300  KAQQDKLIHGVMICHEAPEISHLFFADDSLVFCRANTKEVSTIQNIIQIYQNASGQLVNF 359

Query: 1978 DKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMKL 1799
             KSE  FS+ V    +++I N++ +K +   SKYLG P+  GRSKK IF+F+ E++W KL
Sbjct: 360  SKSEMVFSKGVSNQIQRDISNILPMKILNQFSKYLGMPVALGRSKKQIFNFIQEKIWKKL 419

Query: 1798 KGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKRI 1619
            KGWKEK LS AG  TLIKAVAQAIP Y++S + +P G C+ ++ M+  FWWG+  +H++I
Sbjct: 420  KGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGVCDQLEKMICNFWWGSSTDHRKI 479

Query: 1618 HWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNCM 1439
            HW+ W  + + K +GG+GFR  R FN ALL K  WRL+    SL+ ++LK+KYYP G  +
Sbjct: 480  HWIKWSTVCKHKMEGGIGFRDLRAFNEALLAKQGWRLITQPDSLVAKILKAKYYPKGEFL 539

Query: 1438 EAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNLE 1259
            +A    Q SY W+S+L A  +++ G  W IG+G    IW D W+      TS  S  N  
Sbjct: 540  KASHKQQMSYTWKSILQASWVIKRGSYWTIGSGQGINIWEDNWIQQKGNPTSTISKPNNC 599

Query: 1258 DNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSVK 1079
                V +L+D    DWN  +I+Q F+ +EA  I   P+  +  +D L W   ++G +SVK
Sbjct: 600  GLIKVKELMDDNYNDWNVTIINQIFNPYEAHMIQQIPILDKTQSDILTWDGTRDGHYSVK 659

Query: 1078 TAYHSLCE--INARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRR 905
            + Y ++ E   N+ N  ++SS+ + +I+K +W+  VP +  +F+W+   + +P +  L +
Sbjct: 660  SGYQAIMEWAKNSDNNNATSSNSSMEIWKVLWKLNVPPKHSHFIWRCLSNAIPVKGKLFK 719

Query: 904  KGIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFAS--RIGAQPPVLADIIGWLLNWLTC 731
            KGI+ D  CP C     T +H+FL+ +  K   FAS   +      L +   W    +  
Sbjct: 720  KGIRCDPLCPRCLNHVETIQHVFLECDWAKKVWFASPLTLNLNSNQLTEFYDWFNYMIIN 779

Query: 730  RDSEGAQLFCILLWMVWKARNETVFNNR 647
             D E  +    + + +W  RN  VF N+
Sbjct: 780  TDKECMEKIVAITYEIWNTRNLLVFQNK 807


>gb|PNX96384.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1376

 Score =  410 bits (1054), Expect = e-123
 Identities = 200/499 (40%), Positives = 298/499 (59%), Gaps = 2/499 (0%)
 Frame = -2

Query: 2137 IHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVNLDKSEASF 1958
            IHGIKI++ AP++SHLFFADDSL+F RAN +E   I +I+  YQ ASGQ+VNL KSE  F
Sbjct: 671  IHGIKISQGAPEVSHLFFADDSLIFCRANKKEVSTINNIIQVYQNASGQLVNLAKSEMVF 730

Query: 1957 SRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMKLKGWKEKC 1778
            S+ V T  K+++  ++ +K  E  SKYLG PI +GRSKK IF+ + E++W KLKGWKEK 
Sbjct: 731  SKGVTTETKKDVTTILPMKTPEHFSKYLGMPIVYGRSKKQIFNHIKEKIWQKLKGWKEKN 790

Query: 1777 LSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKRIHWMSWGK 1598
            LS AG  TLIKAVAQAIP Y++SC+ +P G C+ ++ M+  FWWG+  +H+++HW+ W  
Sbjct: 791  LSFAGRSTLIKAVAQAIPTYLMSCFLIPKGICDQLEKMICNFWWGSTTDHRKMHWVKWSN 850

Query: 1597 MSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNCMEAKLGYQ 1418
            +   K  GG+GFR  R FN ALL K  WRL+    SL+ +VLK+KYYP  + + AK    
Sbjct: 851  ICTQKNNGGLGFRDLRAFNEALLAKQSWRLITNPTSLVAQVLKAKYYPKEDLLHAKYSKN 910

Query: 1417 PSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNLEDNECVSK 1238
             SY WRS++    +++ G  W IG+G  T IW D W+   S     +   N  +   V +
Sbjct: 911  MSYTWRSIIQTNWIIKRGSYWTIGSGQNTNIWEDNWIQQASSTYKCNPKPNNLNLTKVQE 970

Query: 1237 LIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSVKTAYHSLC 1058
            L+D     W   +I+Q F  +EA  I   P+  +   D L W   ++G +SVK+ YHS+ 
Sbjct: 971  LMDTNNNAWKEDIINQIFQPYEAQMILKIPIMDKAQPDTLTWDNTQDGIYSVKSGYHSIM 1030

Query: 1057 EINARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRKGIQLDVTC 878
            E  +    +++S+ +  ++K IW+  VP +  + LW++ K+ LP + +L ++G++ D  C
Sbjct: 1031 EW-SHTLNATTSNNSQDLWKAIWKLNVPPKHTHLLWRVLKNALPVKNNLFKRGVRCDPLC 1089

Query: 877  PLCSAEPGTPEHLFLD*NITKLTLFASRIGAQ--PPVLADIIGWLLNWLTCRDSEGAQLF 704
            P C+    T  H+FLD   TK   FAS +        + D+  W+   +   + E  +  
Sbjct: 1090 PRCTNCLETTNHVFLDCEWTKQVWFASSLNLNLGQNQITDVYDWIRYMINNTNKECIEQI 1149

Query: 703  CILLWMVWKARNETVFNNR 647
              +++ +W ARN  VF  +
Sbjct: 1150 TAIIYGIWYARNMLVFQEK 1168


>gb|PNX95563.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1188

 Score =  406 bits (1044), Expect = e-123
 Identities = 212/516 (41%), Positives = 308/516 (59%), Gaps = 4/516 (0%)
 Frame = -2

Query: 2143 KQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVNLDKSEA 1964
            K IHGI+I++ AP+ISHLFFADDSL+F RA  +E   I DI+ TYQ ASGQ+VNL KSE 
Sbjct: 484  KLIHGIRISQGAPEISHLFFADDSLMFCRATNKEVSTIQDIIQTYQKASGQLVNLTKSEM 543

Query: 1963 SFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMKLKGWKE 1784
             FS+ V    K+ I  ++ ++  E  SKYLG PI  GRSK+ IF+++ E++W KLKGWKE
Sbjct: 544  VFSKGVTNGIKEEISRILPMQISEYFSKYLGMPIVHGRSKQQIFNYIREKIWKKLKGWKE 603

Query: 1783 KCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKRIHWMSW 1604
            K LS AG  TLIKAVAQAIP Y++SC+ +P G C  ++ M+  FWWG+  + +++HW+ W
Sbjct: 604  KNLSFAGRGTLIKAVAQAIPTYLMSCFLIPKGVCEQLEKMICNFWWGSTTDQRKMHWLKW 663

Query: 1603 GKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNCMEAKLG 1424
             K+   K  GG+GFR  R FN ALL K  WRL+    SL+ +VLK+KY+PN + + AK  
Sbjct: 664  SKVCNQKRNGGLGFRDLRAFNEALLAKQGWRLITKPTSLVAQVLKAKYFPNESFLNAKHK 723

Query: 1423 YQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGS-FLTSRSSVNNLEDNEC 1247
               SY WRS++ A  +++ G  W IG+G    IW D W+   S     R   NNL   + 
Sbjct: 724  QVMSYTWRSIMQASWVIKRGSYWSIGDGEDINIWEDNWMQQKSATYKGRPKPNNLNLIK- 782

Query: 1246 VSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSVKTAYH 1067
            V +L+D    +WN  +I+Q F  +EA  I + P+  +   D L W   ++GQ+SVK+ YH
Sbjct: 783  VKELMDSNYNEWNTDIINQVFLPYEAQMILNIPIIDKTQPDMLTWDCTQDGQYSVKSGYH 842

Query: 1066 SLCEINARNWPSSSSSINDK-IYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRRKGIQL 890
            ++ E    N P++S S N + I+  +W+ KVP +  + LW++  + LP + +L ++G++ 
Sbjct: 843  AIMEWG--NLPNASPSNNSQHIWNVLWKLKVPPKHSHLLWRVLHNALPVKNNLFKRGVRC 900

Query: 889  DVTCPLCSAEPGTPEHLFLD*NITKLTLFAS--RIGAQPPVLADIIGWLLNWLTCRDSEG 716
            D  CP CS    T  H+FLD    K T FAS   +      L D   W+   +   + E 
Sbjct: 901  DPLCPRCSNSMETIHHVFLDCEWAKQTWFASALTLNLGQNQLTDFYDWINYMINNTNKEC 960

Query: 715  AQLFCILLWMVWKARNETVFNNRKPDLIRIANAALD 608
             +    +++ +W ARN  VF  +      I++ AL+
Sbjct: 961  IEKITAIMYGIWYARNVLVFQGKNLPPQEISSTALN 996


>gb|PNY02482.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1070

 Score =  403 bits (1036), Expect = e-123
 Identities = 203/508 (39%), Positives = 301/508 (59%), Gaps = 4/508 (0%)
 Frame = -2

Query: 2158 KLVEGKQIHGIKIARQAPQISHLFFADDSLLFTRANCEEARVILDILHTYQLASGQVVNL 1979
            K  + K IHG+ I  +AP+ISHLFFADDSL+F RAN +E   I +I+  YQ ASGQ+VN 
Sbjct: 454  KAQQDKLIHGVMICHEAPEISHLFFADDSLVFCRANTKEVSTIQNIIQIYQNASGQLVNF 513

Query: 1978 DKSEASFSRNVQTINKQNICNMMGVKAVEAQSKYLGFPIPFGRSKKAIFSFVMERVWMKL 1799
             KSE  FS+ V    +++I N++ +K +   SKYLG P+  GRSKK IF+F+ E++W KL
Sbjct: 514  SKSEMVFSKGVSNQIQRDISNILPMKILNQFSKYLGMPVALGRSKKQIFNFIQEKIWKKL 573

Query: 1798 KGWKEKCLSGAGTETLIKAVAQAIPNYILSCYEMPIGCCNDIDSMLAKFWWGTDEEHKRI 1619
            KGWKEK LS AG  TLIKAVAQAIP Y++S + +P G C+ ++ M+  FWWG+  +H++I
Sbjct: 574  KGWKEKHLSFAGRGTLIKAVAQAIPTYLMSSFLLPKGVCDQLEKMICNFWWGSSTDHRKI 633

Query: 1618 HWMSWGKMSRPKCKGGMGFRGFRDFNIALLGKHCWRLVNGDCSLLERVLKSKYYPNGNCM 1439
            HW+ W  + + K +GG+GFR  R FN ALL K  WRL+    SL+ ++LK+KYYP G  +
Sbjct: 634  HWIKWSTVCKHKMEGGIGFRDLRAFNEALLAKQGWRLITQPDSLVAKILKAKYYPKGEFL 693

Query: 1438 EAKLGYQPSYAWRSMLSARKLVQTGGKWIIGNGSTTRIWGDRWLSDGSFLTSRSSVNNLE 1259
            +A    Q SY W+S+L A  +++ G  W IG+G    IW D W+      TS  S  N  
Sbjct: 694  KASHKQQMSYTWKSILQASWVIKRGSYWTIGSGQGINIWEDNWIQQKGNPTSTISKPNNC 753

Query: 1258 DNECVSKLIDFGTRDWNRQLISQFFDTHEATKIFSTPLSPRLPNDKLVWQWEKNGQFSVK 1079
                V +L+D    DWN  +I+Q F+ +EA  I   P+  +  +D L W   ++G +SVK
Sbjct: 754  GLIKVKELMDDNYNDWNVTIINQIFNPYEAHMIQQIPILDKTQSDILTWDGTRDGHYSVK 813

Query: 1078 TAYHSLCE--INARNWPSSSSSINDKIYKEIWRAKVPNRVRNFLWKLTKSILPTRTSLRR 905
            + Y ++ E   N+ N  ++SS+ + +I+K +W+  VP +  +F+W+   + +P +  L +
Sbjct: 814  SGYQAIMEWAKNSDNNNATSSNSSMEIWKVLWKLNVPPKHSHFIWRCLSNAIPVKGKLFK 873

Query: 904  KGIQLDVTCPLCSAEPGTPEHLFLD*NITKLTLFAS--RIGAQPPVLADIIGWLLNWLTC 731
            KGI+ D  CP C     T +H+FL+ +  K   FAS   +      L +   W    +  
Sbjct: 874  KGIRCDPLCPRCLNHVETIQHVFLECDWAKKVWFASPLTLNLNSNQLTEFYDWFNYMIIN 933

Query: 730  RDSEGAQLFCILLWMVWKARNETVFNNR 647
             D E  +    + + +W  RN  VF N+
Sbjct: 934  TDKECMEKIVAITYEIWNTRNLLVFQNK 961