BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00017530
         (2059 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY06854.1| hypothetical protein L195_g003333 [Trifolium prat...   764   0.0  
dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subt...   783   0.0  
dbj|GAU26218.1| hypothetical protein TSUD_354400 [Trifolium subt...   768   0.0  
gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   768   0.0  
dbj|GAU51717.1| hypothetical protein TSUD_415230, partial [Trifo...   755   0.0  
gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   764   0.0  
dbj|GAU18876.1| hypothetical protein TSUD_228660 [Trifolium subt...   761   0.0  
gb|PNX78431.1| transposon Tf2-1 polyprotein, partial [Trifolium ...   697   0.0  
dbj|GAU36702.1| hypothetical protein TSUD_16140 [Trifolium subte...   718   0.0  
gb|PNX96980.1| retrotransposon-related protein, partial [Trifoli...   681   0.0  
dbj|GAU27665.1| hypothetical protein TSUD_126110 [Trifolium subt...   686   0.0  
gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trif...   594   0.0  
gb|PNX92470.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   591   0.0  
gb|PNX91810.1| transposon Ty3 gag-pol polyprotein [Trifolium pra...   589   0.0  
gb|KYP64105.1| Retrotransposable element Tf2 [Cajanus cajan]          579   0.0  
gb|PNX92763.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   597   0.0  
gb|KYP55632.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]   582   0.0  
dbj|GAU41853.1| hypothetical protein TSUD_366000 [Trifolium subt...   597   0.0  
gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   589   0.0  
gb|PNY17781.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   584   0.0  

>gb|PNY06854.1| hypothetical protein L195_g003333 [Trifolium pratense]
          Length = 669

 Score =  764 bits (1972), Expect = 0.0
 Identities = 359/524 (68%), Positives = 429/524 (81%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VRELCAITSAVKKWR YLLGRKF IHTDQRSLRELMTQI+QTPEQQFYLAKLLGY YEIV
Sbjct: 56   VRELCAITSAVKKWRAYLLGRKFFIHTDQRSLRELMTQIVQTPEQQFYLAKLLGYIYEIV 115

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPGAQNRVADALSR+ +  + CL IT+PHW+F+              DL+ KV+  PDS
Sbjct: 116  YKPGAQNRVADALSRVHEHPSQCLVITIPHWDFIQHLQQTFATDDNLQDLIKKVEATPDS 175

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            +P   ++  +LYF+GKLFIP N   K +LL EFH+S +GGHSG+ KTLGR+KENVYWD+M
Sbjct: 176  FPGFSLIQGVLYFRGKLFIPDNPAIKTMLLTEFHTSPIGGHSGVQKTLGRLKENVYWDNM 235

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            K DVVNFVKAC+VCQ TKH  HSPYG+LQPLPIPNGVWEDIS+DFIVGLPSFQ ++V+LV
Sbjct: 236  KLDVVNFVKACYVCQQTKHLNHSPYGILQPLPIPNGVWEDISMDFIVGLPSFQGHTVVLV 295

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDR SKAAHFGML TH+ ASKVADLFAK +C+LHGMPKS+VSDRDPIF+SKFW++LF  
Sbjct: 296  VVDRFSKAAHFGMLQTHYNASKVADLFAKMICRLHGMPKSIVSDRDPIFISKFWQQLFHL 355

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GT LRMS AYHPQ+DGQTEIVNK LQQYLRCF H+QP  WG YLHWAEWHYNTS H++T
Sbjct: 356  SGTTLRMSIAYHPQTDGQTEIVNKALQQYLRCFVHDQPKKWGNYLHWAEWHYNTSQHAST 415

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
             LTPF+IVYGK+PPSL QY+ GS+ +EA+D+ L DR++IL+ L+KKL +AQ++MK+FAD 
Sbjct: 416  TLTPFEIVYGKKPPSLLQYIPGSTSIEALDSTLSDRETILQTLRKKLLRAQEDMKKFADA 475

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
             R PH FK GD VYVKLRPYRQ SV+G R  KL+KRY+GP+++  A+G VAFE+ LP  S
Sbjct: 476  HRTPHTFKVGDYVYVKLRPYRQTSVAGHRIQKLAKRYFGPFQIKSAMGPVAFELILPADS 535

Query: 618  KIHPVFHVSQLKPCYGKEPQAPDLPADTFNNQPVVKPLAVIDWK 487
            +IHPVFHVSQLK CY     +  LP  T ++Q +++PL V+ W+
Sbjct: 536  RIHPVFHVSQLKHCYNPTVASLPLPPMTPDDQFLIEPLVVLGWR 579


>dbj|GAU30089.1| hypothetical protein TSUD_392450 [Trifolium subterraneum]
          Length = 1853

 Score =  783 bits (2023), Expect = 0.0
 Identities = 367/524 (70%), Positives = 435/524 (83%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VRELCAITSAVKKWRTYLLGRKF++HTDQRSLRELMTQ+IQTPEQQFYLAKLLGY+YEI 
Sbjct: 906  VRELCAITSAVKKWRTYLLGRKFVVHTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIK 965

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPG QNRVADALSR+ +   S +AIT+PHW+FL              DL++KV   P+S
Sbjct: 966  YKPGTQNRVADALSRVHENFPSVMAITIPHWKFLEKLQAEINQDSEVKDLMSKVANDPNS 1025

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            YP  +++  LLYFKG+L+IP++S FK +LLEE H++ +GGHSGI +T GR+KEN YW  +
Sbjct: 1026 YPNFKIIKGLLYFKGRLYIPASSSFKNILLEEIHATPVGGHSGIQRTYGRMKENFYWVGL 1085

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            K DVVN+V +CH CQ TK PTH+PYGLLQPLPIP  +WEDIS+DFIVGLPSFQ+ +VI V
Sbjct: 1086 KQDVVNYVNSCHTCQQTKDPTHAPYGLLQPLPIPKHIWEDISMDFIVGLPSFQHYTVIFV 1145

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDR SKAAHFGMLPT FTA KVA+LF   VCKLHGMP S+VSDRDPIFLSKFW+ELF  
Sbjct: 1146 VVDRFSKAAHFGMLPTGFTAVKVAELFTTMVCKLHGMPHSIVSDRDPIFLSKFWQELFHL 1205

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GTKLRMS+AYHPQSDGQTE+VNKTLQQYLRCF H+QP  WGKY+HWAEWHYNT++H++T
Sbjct: 1206 SGTKLRMSTAYHPQSDGQTEVVNKTLQQYLRCFVHDQPKRWGKYIHWAEWHYNTAIHTST 1265

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            G +PFQ+VYGK PPSLPQYLAG+SQ+EA+D+ L +R+ IL+NLKKKL KAQ NMK +AD+
Sbjct: 1266 GYSPFQVVYGKPPPSLPQYLAGTSQLEALDSELSNREIILQNLKKKLLKAQQNMKIYADQ 1325

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
             R PH FK GDLVYVKLRPYRQ S+   R HKLSKR+YGP+KLL+ IGDVAFE+ELP  S
Sbjct: 1326 HRSPHTFKTGDLVYVKLRPYRQTSLPAQRTHKLSKRFYGPFKLLRQIGDVAFELELPPES 1385

Query: 618  KIHPVFHVSQLKPCYGKEPQAPDLPADTFNNQPVVKPLAVIDWK 487
            KIHPVFHVS+LKPC+    +   LP D  +N P+V+PLAV+DWK
Sbjct: 1386 KIHPVFHVSKLKPCHDPASKPLVLPPDAVDNSPMVQPLAVLDWK 1429


>dbj|GAU26218.1| hypothetical protein TSUD_354400 [Trifolium subterraneum]
          Length = 1332

 Score =  768 bits (1983), Expect = 0.0
 Identities = 361/524 (68%), Positives = 433/524 (82%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VRELCAIT+AVKKWRTYLLG  FII+TDQRSLRELMTQ+IQTPEQQFYLAKLLGY+YEIV
Sbjct: 808  VRELCAITTAVKKWRTYLLGNTFIIYTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIV 867

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPG QNRVADALSR+      CLA TVPH +F+T              LL +V+  P  
Sbjct: 868  YKPGPQNRVADALSRVH-----CLAFTVPHLDFITTFKQQLLQDDEFQQLLAQVQRQPHD 922

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            +   +V++ LL+FKGKLF+PS SP K+ LLEEFHSS +GGHSG+H+T GR++ENV+W  M
Sbjct: 923  HKDFKVIDGLLFFKGKLFLPSKSPLKQTLLEEFHSSIIGGHSGVHRTYGRLQENVFWHGM 982

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            +SDV  FVK+C  CQ TK   H PYGLL PLP+P  VWEDISLDFIVGLPSFQ ++V+LV
Sbjct: 983  QSDVTQFVKSCATCQQTKSSNHLPYGLLNPLPVPERVWEDISLDFIVGLPSFQTHTVVLV 1042

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDRLSK AHFG LPTHFTA+KVADLFA+ VCKLHGMPKS+VSDRDPIFLS FWKELFR 
Sbjct: 1043 VVDRLSKTAHFGSLPTHFTAAKVADLFAQMVCKLHGMPKSIVSDRDPIFLSNFWKELFRL 1102

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            NGTKLRMS+AYHPQSDGQTEIVNK LQQYLRCF H++P  WG++LHWAEWHYNT++H++T
Sbjct: 1103 NGTKLRMSTAYHPQSDGQTEIVNKVLQQYLRCFVHDKPKLWGQFLHWAEWHYNTAVHTST 1162

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            GL+P+Q+VYG+ PP+L +Y+ G+S+++AVD  L DR+++LE L+ KL KAQ  MK +AD+
Sbjct: 1163 GLSPYQVVYGRTPPALTEYIPGTSKLQAVDAMLNDRETVLELLRNKLLKAQTVMKEYADQ 1222

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
            +R+PH FK GDLV+VKLRPYRQ SV G R HKLSKRYYGP+KL++AIGDVAFE+ELP SS
Sbjct: 1223 KRVPHQFKVGDLVFVKLRPYRQNSVLGRRFHKLSKRYYGPFKLIRAIGDVAFELELPSSS 1282

Query: 618  KIHPVFHVSQLKPCYGKEPQAPDLPADTFNNQPVVKPLAVIDWK 487
            KIH VFHVSQLKPC+G    A DLP+DT +NQP +KP+ ++DW+
Sbjct: 1283 KIHHVFHVSQLKPCFGDMDVAVDLPSDTIDNQPCIKPMVILDWR 1326


>gb|PNY17392.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1510

 Score =  768 bits (1984), Expect = 0.0
 Identities = 362/524 (69%), Positives = 436/524 (83%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VRELCAIT+AVKKWRTYLLG  FII+TDQRSLRELMTQ+IQTPEQQFYLAKLLGY+YEI+
Sbjct: 886  VRELCAITTAVKKWRTYLLGNTFIIYTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIM 945

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPG QNRVADALSR+      CLAITVPH +FL               LLT VK  PD+
Sbjct: 946  YKPGPQNRVADALSRVH-----CLAITVPHLDFLHTLKEQLVQDDEFQQLLTNVKENPDA 1000

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            +    +L+DLL+FKGKLFIPSNSP K  LLEEFHSS +GGHSGIH+T GR++ENV+W  M
Sbjct: 1001 HMGFEILDDLLFFKGKLFIPSNSPLKVTLLEEFHSSTIGGHSGIHRTFGRLQENVFWHGM 1060

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            ++DV  FVK+C +CQ TK PTHSPYGLLQPLPIP+ VWEDISLDF+VGLPSFQ ++V+LV
Sbjct: 1061 RNDVTQFVKSCAICQQTKPPTHSPYGLLQPLPIPDKVWEDISLDFVVGLPSFQTHTVVLV 1120

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDRLSKAAHFG+LPTHFTA+KVADLFAK VCKLHGMP+S+VSDRDPIFLS FW+ELFR 
Sbjct: 1121 VVDRLSKAAHFGLLPTHFTAAKVADLFAKMVCKLHGMPRSIVSDRDPIFLSHFWQELFRL 1180

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GTKLRMS+AYHPQSDGQTE VNK LQQYLRCF H++P  WG YLHWAEWHYNT++H++T
Sbjct: 1181 SGTKLRMSTAYHPQSDGQTENVNKVLQQYLRCFVHDKPKQWGHYLHWAEWHYNTAIHTST 1240

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            G++P+++VYG+ PP+L  Y+ GSS+++AVD  L +RD ++E LK KL KAQ+ MK +AD 
Sbjct: 1241 GISPYEVVYGRPPPTLADYVPGSSKLQAVDATLTERDIVIEVLKNKLLKAQNTMKEYADL 1300

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
            +RIPH FK GD V+VKLRPYRQ SV G R HKLSKR+YGP+KL++AIG+VAFE+ELP++S
Sbjct: 1301 KRIPHQFKVGDWVFVKLRPYRQNSVLGRRFHKLSKRFYGPFKLVRAIGEVAFELELPDTS 1360

Query: 618  KIHPVFHVSQLKPCYGKEPQAPDLPADTFNNQPVVKPLAVIDWK 487
            +IHPVFHVSQLKPC+        LP +T +NQP + P+A++DW+
Sbjct: 1361 RIHPVFHVSQLKPCFDNTVVPLALPPETVDNQPCITPIAILDWR 1404


>dbj|GAU51717.1| hypothetical protein TSUD_415230, partial [Trifolium subterraneum]
          Length = 1147

 Score =  755 bits (1950), Expect = 0.0
 Identities = 361/524 (68%), Positives = 422/524 (80%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VRELCAIT+AVKKWRTYLLG  F I TDQRSLRELMTQIIQTPEQQFYLAKLLGY+YEIV
Sbjct: 520  VRELCAITTAVKKWRTYLLGNTFTIFTDQRSLRELMTQIIQTPEQQFYLAKLLGYSYEIV 579

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPG QNRVADALSR+      CL ITVP  +FLT               L  VK  P  
Sbjct: 580  YKPGPQNRVADALSRVH-----CLVITVPQLDFLTTFKQQLAEDSEFQQFLALVKATPTD 634

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            YP   +LN LL+FKGKLFIP+ SP K  LLEEFHSS +GGHSGIH+T GR++ENV+W+ M
Sbjct: 635  YPDFELLNGLLFFKGKLFIPATSPLKHTLLEEFHSSTIGGHSGIHRTYGRLQENVFWEGM 694

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            + DV+ FVK+C VCQ  K   HSPYGLLQPLPIP+ VWED+SLDFIVGLPSFQ+++ ILV
Sbjct: 695  RKDVIQFVKSCSVCQQNKPTNHSPYGLLQPLPIPHRVWEDVSLDFIVGLPSFQSHTAILV 754

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDRLSKAAHFG+LPTHFTA KVADLFAK +C+LHGMP+S+VSDRDPIFLS FW+ELF  
Sbjct: 755  VVDRLSKAAHFGLLPTHFTAVKVADLFAKMICRLHGMPRSMVSDRDPIFLSHFWQELFHL 814

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GTKLRMS+AYHPQSDGQTEIVNK LQQYLRCF  ++P  WGK+LHWAEWHYNT+ H++T
Sbjct: 815  SGTKLRMSTAYHPQSDGQTEIVNKVLQQYLRCFVSDKPSQWGKFLHWAEWHYNTATHTST 874

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            GL+PFQ+VYG+ PP+L  Y+ GSS ++A+D  L DR+ IL+ LK KL KAQ  MK  AD+
Sbjct: 875  GLSPFQVVYGRAPPTLVDYIPGSSTIQAIDATLSDRNIILQLLKNKLLKAQQIMKEQADQ 934

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
             RI H FK+GDLV+VKLRPYRQ SV G R HKLSKR+YGP+KL+KAIG+VAFE+ELP +S
Sbjct: 935  HRISHSFKEGDLVFVKLRPYRQNSVLGRRVHKLSKRFYGPFKLIKAIGEVAFELELPPNS 994

Query: 618  KIHPVFHVSQLKPCYGKEPQAPDLPADTFNNQPVVKPLAVIDWK 487
            KIHPVFHVSQLKPC+       +LP +  +NQP ++PLAV+DWK
Sbjct: 995  KIHPVFHVSQLKPCFDNNTATLELPTEAIDNQPCIQPLAVLDWK 1038


>gb|PNX94328.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1474

 Score =  764 bits (1973), Expect = 0.0
 Identities = 361/524 (68%), Positives = 431/524 (82%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VRELCAIT+AVKKWRTYLLG  F I+TDQRSLRELMTQ+IQTPEQQFYLAKLLGY+YEI+
Sbjct: 880  VRELCAITTAVKKWRTYLLGNTFAIYTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEII 939

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPG QNRVADALSR+      CL +T+P  +FLT               L +V+  P  
Sbjct: 940  YKPGPQNRVADALSRVH-----CLVLTIPQMDFLTTFKQQLAVDTEFQQFLAQVQAKPAE 994

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            Y +  ++N LL+FKGKLFIP+ SP K  LLEEFH+S +GGHSGIH+T GR++ENV+W  M
Sbjct: 995  YSEFEIMNGLLFFKGKLFIPATSPLKLTLLEEFHASTIGGHSGIHRTYGRLQENVFWYGM 1054

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            ++DV +FVK+C +CQ TK   HSPYGLLQPLPIP  VWEDISLDFIVGLPS Q+++VI V
Sbjct: 1055 RNDVTHFVKSCSICQQTKPANHSPYGLLQPLPIPEKVWEDISLDFIVGLPSVQSHTVIFV 1114

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDRLSKAAHFG LPTHFTA KVADLFAK VCKLHGMP+S+VSDRDPIFLS+FW+ELF+ 
Sbjct: 1115 VVDRLSKAAHFGSLPTHFTAIKVADLFAKMVCKLHGMPRSIVSDRDPIFLSQFWQELFKL 1174

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GTKLRMS+AYHPQSDGQTEIVNK LQQYLRCF H++P+ W ++LHWAEWHYNT++H++T
Sbjct: 1175 SGTKLRMSTAYHPQSDGQTEIVNKVLQQYLRCFVHDKPNQWEQFLHWAEWHYNTAIHTST 1234

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            GL+PFQIVYG+ PP+L  Y+ GSS ++A+D  LIDRD +L+NLK KL+KAQ  MK  AD+
Sbjct: 1235 GLSPFQIVYGRPPPALADYIPGSSSIQAIDATLIDRDMMLQNLKNKLQKAQAIMKEQADQ 1294

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
             RIPH FK GDLV+VKLRPYRQ SV G R HKLSKR+YGP+KL+KAIGDVAFE+ELP +S
Sbjct: 1295 HRIPHKFKVGDLVFVKLRPYRQNSVMGRRIHKLSKRFYGPFKLIKAIGDVAFELELPPTS 1354

Query: 618  KIHPVFHVSQLKPCYGKEPQAPDLPADTFNNQPVVKPLAVIDWK 487
            +IHPVFHVSQLKPC+ +  +  DLP +   NQPV+KPLAV+DWK
Sbjct: 1355 RIHPVFHVSQLKPCFDETSEPLDLPLEALGNQPVIKPLAVLDWK 1398


>dbj|GAU18876.1| hypothetical protein TSUD_228660 [Trifolium subterraneum]
          Length = 1494

 Score =  761 bits (1966), Expect = 0.0
 Identities = 361/524 (68%), Positives = 434/524 (82%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VRELCAITSAVKKWRTYLLG  F IHTDQRSLRELMTQ+IQTPEQQFYLAKLLGY+Y+IV
Sbjct: 889  VRELCAITSAVKKWRTYLLGGTFTIHTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYDIV 948

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPGAQNRVADALSRI      CLA+ +PH EF+T               L KV+  P  
Sbjct: 949  YKPGAQNRVADALSRIH-----CLALYIPHVEFMTKLKEQLINDTEFQQFLGKVQHQPAD 1003

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            +   +V++ L++FKGKLF+P++SP K  LLEEFHSS +GGHSGIH+T GR++ENV+W  M
Sbjct: 1004 FENFQVMDGLIFFKGKLFLPNSSPLKLTLLEEFHSSPIGGHSGIHRTFGRLQENVFWFGM 1063

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            + DV  FVK C +CQ  K   H+PYGLLQPLPIP+ VWEDIS+DFIVGLPSFQ+++VI V
Sbjct: 1064 RKDVEEFVKTCVICQQMKSVNHAPYGLLQPLPIPDRVWEDISMDFIVGLPSFQSHTVIFV 1123

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDRLSKAAHFGML THFTA+KVADLFA  VCKL GMP+S+VSDRDPIFLS FW+ELFR 
Sbjct: 1124 VVDRLSKAAHFGMLATHFTAAKVADLFATMVCKLLGMPRSIVSDRDPIFLSNFWQELFRL 1183

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GTKLRMS+AYHPQSDGQTEIVNKTLQQYLRCF H++P  WG YLHWAEWHYNT++H+ T
Sbjct: 1184 SGTKLRMSTAYHPQSDGQTEIVNKTLQQYLRCFVHHKPTQWGSYLHWAEWHYNTAIHTAT 1243

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            GL+PFQ+VYG+ PP+L  Y+ GS+Q++AV+  L+DRD++L+ LK KL KAQ+ MK  AD+
Sbjct: 1244 GLSPFQVVYGRSPPALQDYMVGSTQIQAVEATLVDRDTVLQELKNKLLKAQEVMKAIADQ 1303

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
            RRIPH F  GDLV+VKLRPYRQISV+G R HKLSKRYYGP+KL++AIG+VAF++ELP +S
Sbjct: 1304 RRIPHKFVIGDLVFVKLRPYRQISVAGRRIHKLSKRYYGPFKLIQAIGEVAFKLELPPTS 1363

Query: 618  KIHPVFHVSQLKPCYGKEPQAPDLPADTFNNQPVVKPLAVIDWK 487
            KIHPVFHVSQLKPCYG    A +LPA+  +NQP+++PL+V++WK
Sbjct: 1364 KIHPVFHVSQLKPCYGDAVTALELPAEAVDNQPLIQPLSVLNWK 1407


>gb|PNX78431.1| transposon Tf2-1 polyprotein, partial [Trifolium pratense]
          Length = 562

 Score =  697 bits (1799), Expect = 0.0
 Identities = 319/476 (67%), Positives = 391/476 (82%)
 Frame = -2

Query: 1914 LAKLLGYNYEIVYKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXX 1735
            LAKLLGY+YEIVYKPGAQNRVADALSR+ +T + C  IT+PHW+F+              
Sbjct: 1    LAKLLGYSYEIVYKPGAQNRVADALSRLHETPSQCSVITIPHWDFMEHLRQSFAMDPTLQ 60

Query: 1734 DLLTKVKLLPDSYPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTL 1555
            + + K++  P +YP  +++  L+YF+GKL+IPS+SP K LLL EFHSS +GGHSGI KTL
Sbjct: 61   EFIQKIEASPATYPGFQIIQGLIYFRGKLYIPSDSPIKSLLLNEFHSSLIGGHSGIQKTL 120

Query: 1554 GRIKENVYWDDMKSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVG 1375
            GR+KENVYWD+MKSDV NF+KAC  CQ TKHPTHSPYGLLQPLPIP GVWEDIS+DFIVG
Sbjct: 121  GRLKENVYWDNMKSDVTNFIKACSTCQQTKHPTHSPYGLLQPLPIPTGVWEDISMDFIVG 180

Query: 1374 LPSFQNNSVILVVVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPI 1195
            LP FQ+ +V+ VVVDR SKAAHFGMLPTHFTA+KVADLFA  V KLHGMPKS++SDRDPI
Sbjct: 181  LPPFQHFTVVFVVVDRFSKAAHFGMLPTHFTATKVADLFATMVSKLHGMPKSIISDRDPI 240

Query: 1194 FLSKFWKELFRFNGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWA 1015
            F+SKFW++LF  +GT LRMS+AYHPQ+DGQTEIVNK LQQYLRCF H+QP  WG +LHWA
Sbjct: 241  FMSKFWQQLFILSGTVLRMSTAYHPQTDGQTEIVNKALQQYLRCFVHDQPKKWGAFLHWA 300

Query: 1014 EWHYNTSLHSTTGLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLK 835
            EWHYNTS HS+TG TPF++VYGK+PPS+PQY++G++ +EA+D  L DR++IL+ L+KKL 
Sbjct: 301  EWHYNTSQHSSTGFTPFEVVYGKKPPSIPQYVSGTTPIEALDATLTDRETILQVLRKKLL 360

Query: 834  KAQDNMKRFADKRRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIG 655
            KAQD+MK+FADK RIPHPFK+GD  YVKLRPYRQ SV+G R  KL+KRY+GP+KL++A+G
Sbjct: 361  KAQDDMKKFADKHRIPHPFKEGDFAYVKLRPYRQTSVAGHRIQKLAKRYFGPFKLIRAMG 420

Query: 654  DVAFEVELPESSKIHPVFHVSQLKPCYGKEPQAPDLPADTFNNQPVVKPLAVIDWK 487
             VAFE+ LP  SKIHPVFHVSQLKPC+     +  LP+    +Q V++PLAV+ W+
Sbjct: 421  PVAFELALPPDSKIHPVFHVSQLKPCFDPTNDSSPLPSMNAEDQLVIEPLAVLGWR 476


>dbj|GAU36702.1| hypothetical protein TSUD_16140 [Trifolium subterraneum]
          Length = 1358

 Score =  718 bits (1854), Expect = 0.0
 Identities = 346/495 (69%), Positives = 402/495 (81%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VRELCAIT+AVKKWRTYLLG  F I TDQRSLRELMTQ+IQTPEQQFYLAKLLGY+YEIV
Sbjct: 853  VRELCAITTAVKKWRTYLLGNTFTIFTDQRSLRELMTQVIQTPEQQFYLAKLLGYSYEIV 912

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPG QNR+ADALSR+Q     CL ITVP  +FL                L +V   P  
Sbjct: 913  YKPGPQNRIADALSRVQ-----CLVITVPQLDFLATFKQQLAAETEFQQFLARVISNPAE 967

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            Y    V+N LL+ KGKLFIP+NSP K  LLEEFHSS +GGHSGIH+T GR++ENV+W+ M
Sbjct: 968  YSDFEVMNGLLFVKGKLFIPANSPLKTTLLEEFHSSTIGGHSGIHRTFGRLQENVFWEGM 1027

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            + DV  FVK+C VCQ TK   H PYGLLQPLPIPN VWED+SLDFIVGLPSFQ+++VILV
Sbjct: 1028 RKDVTQFVKSCSVCQQTKPANHYPYGLLQPLPIPNRVWEDVSLDFIVGLPSFQSHTVILV 1087

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDR SKAAHFG LPTHFTA +VADLFAK +C+LHGMP+S+VSDRDPIFLS FW+ELFR 
Sbjct: 1088 VVDRFSKAAHFGSLPTHFTAVRVADLFAKMICRLHGMPRSMVSDRDPIFLSHFWQELFRL 1147

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GTKLRMS+AYHPQSDGQTEIVNK LQQYLRCF H++P  WG++LHWAEWHYNT+ H++T
Sbjct: 1148 SGTKLRMSTAYHPQSDGQTEIVNKVLQQYLRCFVHDKPKHWGQFLHWAEWHYNTATHTST 1207

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            GL+PFQ+VYG+ PP+L  Y+ GSS ++AVD  L DR++IL+ LK KL KAQ  MK  AD 
Sbjct: 1208 GLSPFQVVYGRTPPALVDYIPGSSTIQAVDATLGDRETILQVLKTKLLKAQAVMKEQADM 1267

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
             R+ H FK GDLV+VKLRPYRQ SV G R HKLSKR+YGP+KL+KAIG+VAFE+ELP SS
Sbjct: 1268 HRVHHQFKVGDLVFVKLRPYRQNSVLGRRVHKLSKRFYGPFKLIKAIGEVAFELELPPSS 1327

Query: 618  KIHPVFHVSQLKPCY 574
            +IHPVFHVSQLKPC+
Sbjct: 1328 RIHPVFHVSQLKPCF 1342


>gb|PNX96980.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1220

 Score =  681 bits (1757), Expect = 0.0
 Identities = 308/463 (66%), Positives = 382/463 (82%)
 Frame = -2

Query: 1875 KPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDSY 1696
            K    NRVADALSR+ +  + CL IT+PHW+F+              +L+ +V+  P ++
Sbjct: 693  KASTYNRVADALSRVHENPSQCLTITIPHWDFIQQLRQSFLADASLQELMKQVRDSPSTH 752

Query: 1695 PKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDMK 1516
            P+ +++ DLL+++GKLFIP+NS  K +LLEEFHSS +GGHSGIHKTLGR+KENVYW++M+
Sbjct: 753  PEFQIIQDLLFYRGKLFIPTNSSIKTMLLEEFHSSPIGGHSGIHKTLGRLKENVYWENMR 812

Query: 1515 SDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILVV 1336
             DV  FVKAC +CQ TKHP H PYGLLQPLP+P GVWEDISLDFI+GLPSFQ ++VILVV
Sbjct: 813  EDVTKFVKACDICQQTKHPNHLPYGLLQPLPVPAGVWEDISLDFIIGLPSFQTHTVILVV 872

Query: 1335 VDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRFN 1156
            VDR SKAAHFGMLPTH TASKVADLFA+ +C+LHGMPKS+VSDRDPIF+SKFW++LF+ +
Sbjct: 873  VDRFSKAAHFGMLPTHHTASKVADLFARMICRLHGMPKSIVSDRDPIFVSKFWQKLFQLS 932

Query: 1155 GTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTTG 976
            GTKLRMS+AYHPQ+DGQTEIVNK LQQYLRCF HN P TWG +LHWAEWHYNTS+HS+TG
Sbjct: 933  GTKLRMSTAYHPQTDGQTEIVNKALQQYLRCFVHNTPKTWGNFLHWAEWHYNTSIHSSTG 992

Query: 975  LTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADKR 796
             TPF++VYGK+PPSLPQYL G++ +EA+DT L DR++IL+ LK KL KAQ+ MKRFADK 
Sbjct: 993  FTPFEVVYGKKPPSLPQYLTGTTDIEALDTMLTDRENILQILKNKLLKAQETMKRFADKS 1052

Query: 795  RIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESSK 616
            RIPHPFK+GD VYVKLRP+RQ+SV+G R  KLSKRYYGP++++KA+G VAFE+ LP+ SK
Sbjct: 1053 RIPHPFKEGDYVYVKLRPHRQVSVAGHRLRKLSKRYYGPFQIIKAMGPVAFELSLPQGSK 1112

Query: 615  IHPVFHVSQLKPCYGKEPQAPDLPADTFNNQPVVKPLAVIDWK 487
            IHPVFHVSQLKPC        +LP    +NQP+V+PLA++ W+
Sbjct: 1113 IHPVFHVSQLKPCDSTSTPPLNLPPLAVDNQPIVQPLAILGWR 1155



 Score = 68.6 bits (166), Expect = 4e-08
 Identities = 36/63 (57%), Positives = 43/63 (68%)
 Frame = -1

Query: 475  TQLQLVLIQWEGMHPEETTWELLSEMAATYLELNLEGKVRAEEGRDVTDIELEEEEQTLV 296
            T  Q VLIQWEGM PE+TTWE L +M A + +LNLE KV  EEGRDV  +E   EE+   
Sbjct: 1160 TDQQQVLIQWEGMLPEDTTWEDLEDMRAIFPDLNLEDKVFVEEGRDV--MEEPREEEDWA 1217

Query: 295  DDY 287
            +DY
Sbjct: 1218 EDY 1220


>dbj|GAU27665.1| hypothetical protein TSUD_126110 [Trifolium subterraneum]
          Length = 1402

 Score =  686 bits (1769), Expect = 0.0
 Identities = 333/524 (63%), Positives = 400/524 (76%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VRELCAITSAVKKWRTYLLGRKF+I TDQRSLRELMTQIIQTPEQQFYLAKLLGY+YEI+
Sbjct: 821  VRELCAITSAVKKWRTYLLGRKFVILTDQRSLRELMTQIIQTPEQQFYLAKLLGYSYEIM 880

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPGAQNRVADALSR+      C  ITVP W+FL              +L   +   P S
Sbjct: 881  YKPGAQNRVADALSRVH-----CYTITVPQWDFLNLLKEQLQEDTQFQELAQNIHQHPQS 935

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            Y  +++++ L++F+GKLF+P +SP K+LLL+EFH++ LGGHSG+H+T G IKENVYW  +
Sbjct: 936  YSDYKLIDGLIFFRGKLFLPPDSPMKQLLLQEFHATPLGGHSGVHRTYGHIKENVYWQGL 995

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            + DV  FVK C VCQ  K    SPYGLL PLPIP+ VWEDISLDFI+GLPSFQN++VILV
Sbjct: 996  QKDVTEFVKTCVVCQQVKPLQTSPYGLLHPLPIPDRVWEDISLDFIIGLPSFQNHTVILV 1055

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDRLSK AHFGMLP++F A KVA+LF   VCKLHGMP+S+VSDRDPIFLS+FW+ELFR 
Sbjct: 1056 VVDRLSKVAHFGMLPSNFGAVKVAELFINMVCKLHGMPRSMVSDRDPIFLSRFWRELFRL 1115

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            NGTKLRMS+AYHPQSDGQTEIVNKTLQQYLRCF H QPH WGK+L WAEWHYNT++HS+T
Sbjct: 1116 NGTKLRMSTAYHPQSDGQTEIVNKTLQQYLRCFVHTQPHQWGKFLPWAEWHYNTAVHSST 1175

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            G+TPF+IVYG+ PP+L  Y+AGSSQ++A+D  L  RD +L NLKKKL KAQ+ MK    K
Sbjct: 1176 GITPFEIVYGRAPPNLSTYVAGSSQIQALDEELTMRDQVLANLKKKLAKAQETMKNGGKK 1235

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
                                             S+R+YGP+K+++AIG+VAFE+ELP +S
Sbjct: 1236 D--------------------------------SQRFYGPFKIIRAIGEVAFELELPPAS 1263

Query: 618  KIHPVFHVSQLKPCYGKEPQAPDLPADTFNNQPVVKPLAVIDWK 487
            KIH VFHVS+LKPC+G    A +LP +   NQP+V+PLAV+DWK
Sbjct: 1264 KIHLVFHVSKLKPCHGNAIPALELPMEAEGNQPLVQPLAVLDWK 1307



 Score = 62.4 bits (150), Expect = 4e-06
 Identities = 36/91 (39%), Positives = 53/91 (58%)
 Frame = -1

Query: 484  DTETQLQLVLIQWEGMHPEETTWELLSEMAATYLELNLEGKVRAEEGRDVTDIELEEEEQ 305
            +TE    +VLIQW+G++PE+ TWE   EM+  Y E +LE KV  +   DV D   ++E  
Sbjct: 1308 ETEDGSPMVLIQWQGLYPEDATWESYEEMSRAYPEFHLEDKVTLDGPGDVMD---QDESL 1364

Query: 304  TLVDDYDDVNVPIAKRKARRGKVRPKWSNEY 212
             LV     +  P AK KA+R  V PK+ +++
Sbjct: 1365 GLV----PMEKPNAKDKAKRKIVPPKYLDDF 1391


>gb|PNX73902.1| transposon Ty3 gag-pol polyprotein, partial [Trifolium pratense]
          Length = 893

 Score =  594 bits (1532), Expect = 0.0
 Identities = 290/528 (54%), Positives = 378/528 (71%), Gaps = 2/528 (0%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            +REL AITSAVK+WR YLLG  F+I +D RSL+EL+TQ+IQTPEQQFYL+KLLGY+Y+I 
Sbjct: 277  IRELHAITSAVKRWRQYLLGHFFVIQSDHRSLKELLTQVIQTPEQQFYLSKLLGYHYDIQ 336

Query: 1878 YKPGAQNRVADALSRI-QDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPD 1702
            YKPG  N VADALSR  + +SA    ++ P + F+              +L   V   P 
Sbjct: 337  YKPGKTNVVADALSRCCEPSSAELNLLSTPPFLFINELREELQQNSSYQELCHNVISDPT 396

Query: 1701 SYPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDD 1522
             +P   + N LL   G+++IP+NS FK LLL+EFH + +GGH+G+ KTL R+  N YW  
Sbjct: 397  KFPDFVISNGLLLMNGRIWIPANSKFKVLLLKEFHETPVGGHAGVIKTLKRLSANFYWQH 456

Query: 1521 MKSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVIL 1342
            M+ ++ +FV  C +CQ TK+ T  P GLLQPLPIP+ VWEDISLDFI GLP     SV+L
Sbjct: 457  MRKEIKDFVARCFICQQTKYSTSKPSGLLQPLPIPSNVWEDISLDFITGLPLSGGYSVLL 516

Query: 1341 VVVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFR 1162
            VVVDR SK  H G LP+HFTA KVA+LF   VCKLHGMP+S+VSDRDPIF+SKFW +LF+
Sbjct: 517  VVVDRFSKYTHLGALPSHFTAYKVAELFVNMVCKLHGMPRSIVSDRDPIFISKFWSDLFK 576

Query: 1161 FNGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHST 982
            F+GT LRMSS+YHPQ+DGQTE+ N+T++QYLR F H +P  W ++L WAE+HYNTS H+ 
Sbjct: 577  FSGTLLRMSSSYHPQTDGQTEVTNRTIEQYLRAFVHQRPMLWHRFLPWAEYHYNTSYHTA 636

Query: 981  TGLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFAD 802
             GLTP+Q+VYGKEPP++  Y+ G+S+V A D  L +R+ +L  L+K L KAQ+ MK  AD
Sbjct: 637  AGLTPYQVVYGKEPPTIATYVLGTSKVAATDDLLNEREEVLAMLRKNLTKAQERMKTLAD 696

Query: 801  KRRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPES 622
              R    F+    V+VKL+PYRQ SVSG + +KL KRY+GP+++L+ IG VA+++ELP  
Sbjct: 697  NHRRDVSFEVNSYVHVKLQPYRQSSVSGVKYNKLQKRYFGPFRVLERIGQVAYKLELPSH 756

Query: 621  SKIHPVFHVSQLKPCYGK-EPQAPDLPADTFNNQPVVKPLAVIDWKLI 481
            SKIH VFH S LKP  G   P AP LP D+ +N P V PLA+++ ++I
Sbjct: 757  SKIHNVFHCSLLKPYLGPIPPDAPILPNDSVDNHPTVTPLAILNSRII 804


>gb|PNX92470.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 856

 Score =  591 bits (1523), Expect = 0.0
 Identities = 291/534 (54%), Positives = 379/534 (70%), Gaps = 2/534 (0%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            +REL AITSAVK+WR YLLG+ FII TD RSL+EL+TQ+IQTPEQQFYL+KLLGY+Y+I 
Sbjct: 235  LRELHAITSAVKRWRQYLLGQFFIIQTDHRSLKELLTQVIQTPEQQFYLSKLLGYHYDIQ 294

Query: 1878 YKPGAQNRVADALSR-IQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPD 1702
            YKPG  N VADALSR  +   A+   +++P + FL              +L  K++  P 
Sbjct: 295  YKPGKSNTVADALSRAFEGVDATLHILSLPQFLFLDELRQDLSNDPAYIELRAKIESTPH 354

Query: 1701 SYPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDD 1522
             +P+  + + L+    K+++   S FK LL++EFH + +GGH GI KTL R+ EN YW +
Sbjct: 355  QFPEFTLRDALILRHNKIWVSPTSRFKRLLMKEFHETPVGGHGGIVKTLKRLSENFYWAN 414

Query: 1521 MKSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVIL 1342
            M++DV  F+  C VCQ TK+ T  P GLLQPLPIP+ +WEDISLDF+ GLP     +VIL
Sbjct: 415  MRTDVKEFINCCVVCQQTKYSTAKPGGLLQPLPIPSNIWEDISLDFVTGLPLSHGYTVIL 474

Query: 1341 VVVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFR 1162
            VVVDR SKA H G LPT FTA +VA+LF   VCKLHG+PKS+VSDRDPIF+S+FW +LFR
Sbjct: 475  VVVDRFSKAVHLGALPTQFTAYRVAELFVNLVCKLHGLPKSIVSDRDPIFISRFWADLFR 534

Query: 1161 FNGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHST 982
            F+GT LRMSS+YHPQ+DGQTE+ N+T++QYLR F H +P  W ++L WAE+HYNTS HS 
Sbjct: 535  FSGTLLRMSSSYHPQTDGQTEVTNRTIEQYLRSFVHARPSQWFRFLPWAEFHYNTSFHSA 594

Query: 981  TGLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFAD 802
             G+TP+Q++YGK PP++P Y+ GSS V A D  L  R+ IL  L++ L KAQ  MK  AD
Sbjct: 595  AGMTPYQVIYGKIPPTIPSYIEGSSSVNACDDMLNSREEILALLRRNLAKAQARMKANAD 654

Query: 801  KRRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPES 622
              R    F+ G  VYVKL+PYRQISV+G +  KLSKR+YGP+ +L+ IG+VA+++ELP  
Sbjct: 655  SHRREVSFEVGSWVYVKLQPYRQISVTGEKYSKLSKRFYGPFVVLERIGEVAYKLELPSH 714

Query: 621  SKIHPVFHVSQLKPCYGKEPQAPD-LPADTFNNQPVVKPLAVIDWKLIQKRSCS 463
            SKIH VFH S LK   G +P   D LP D+ +N P+V+PLA+I+ K +     S
Sbjct: 715  SKIHNVFHCSVLKQHQGPDPSEIDPLPFDSVDNHPLVEPLAIINSKTVTSAGVS 768


>gb|PNX91810.1| transposon Ty3 gag-pol polyprotein [Trifolium pratense]
          Length = 843

 Score =  589 bits (1518), Expect = 0.0
 Identities = 283/526 (53%), Positives = 380/526 (72%), Gaps = 1/526 (0%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VREL AIT+AVKKWR YLLG  FII TD +SL++L++Q+IQTPEQQ YL+KLLG+++ I 
Sbjct: 236  VRELHAITTAVKKWRQYLLGHHFIIFTDHKSLKQLISQVIQTPEQQVYLSKLLGFDFTIQ 295

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YK G+ N VADALSRI   SASCL +TVPH+ FL               L   +   P S
Sbjct: 296  YKAGSTNVVADALSRITP-SASCLLLTVPHFVFLNELKSQLSTTQEFQQLKLAIAQQPAS 354

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            Y  +    DL++FK K+++P +   K+ +L EFH+S + GH G+ KT  R++ N +W  M
Sbjct: 355  YSDNEEHQDLIFFKKKIWLPRDFSLKDRILHEFHNSPISGHMGVDKTFHRLQANFFWQGM 414

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            + D+ +F+  C VCQ TK+ T  P GLLQPLP+P+G+WED+SLDFI GLP     + I V
Sbjct: 415  RQDIRSFIAKCSVCQSTKYETKKPAGLLQPLPVPSGIWEDLSLDFITGLPPSHGYTTIFV 474

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDR SK AHF  LPT +TA KVA LF  T+CK HGMP+SLVSDRDP+F+S+FW+ELF+ 
Sbjct: 475  VVDRFSKGAHFSALPTTYTAYKVAQLFLDTICKHHGMPRSLVSDRDPVFISQFWRELFKL 534

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GT+LRMS+AYHP++DGQTE++N++L+QYLR F H++P  W  +L  AEW YNTS HS T
Sbjct: 535  SGTQLRMSTAYHPETDGQTEVLNRSLEQYLRAFVHHKPSLWFTFLSLAEWSYNTSKHSAT 594

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            G +PF +VYGK+P S+PQY+ G+S +EAVD+ L +R + L+ L++KL K Q +MK  ADK
Sbjct: 595  GYSPFHVVYGKDPVSIPQYVLGTSPIEAVDSMLAERQAFLQFLRRKLLKVQSHMKEIADK 654

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
            +R    F  GD VY+KLRPYRQ S++    +KLSKRY+GPYK+L+ IG VA++++LP +S
Sbjct: 655  KRRHVEFNVGDFVYLKLRPYRQRSITLASYNKLSKRYFGPYKILQKIGPVAYKLDLPSTS 714

Query: 618  KIHPVFHVSQLKPCYGKEPQA-PDLPADTFNNQPVVKPLAVIDWKL 484
            KIHPVFH S LK   G  P A  +LP  T ++QP+++PLA++D K+
Sbjct: 715  KIHPVFHCSLLKLHQGDLPAAHAELPPSTIDHQPIIEPLAIVDTKM 760


>gb|KYP64105.1| Retrotransposable element Tf2 [Cajanus cajan]
          Length = 633

 Score =  579 bits (1493), Expect = 0.0
 Identities = 279/527 (52%), Positives = 376/527 (71%), Gaps = 2/527 (0%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            +RELCAITSAV+KWR YLLGR FII+TDQ+S+++L++Q   TP+Q  YL KLLG+++EI 
Sbjct: 15   IRELCAITSAVQKWRKYLLGRHFIIYTDQQSIKDLLSQTALTPDQS-YLTKLLGFDFEIH 73

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPG  N +ADALSRI     S   I++   +FL              DL  ++   P S
Sbjct: 74   YKPGRSNTMADALSRILPEINSFFIISITQMDFLEDLKRCLSSDNAFLDLKERLLHAPSS 133

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            +P   +  DL+  KGK+++P +    +LLL EFHS+ L GH G+ +TL +++EN YW++M
Sbjct: 134  FPDFSIHQDLILHKGKIWLPRSCSMIQLLLHEFHSTPLAGHPGVTRTLAKLQENFYWENM 193

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            + DV+ FV  C  CQ TK PT  P GLLQP+P P+  WED+SLDFI+GLP +Q ++ ILV
Sbjct: 194  RKDVLTFVAQCTTCQQTKVPTQRPPGLLQPIPPPSRCWEDLSLDFIIGLPPYQGHTTILV 253

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDR SK  HFGMLP  FTA+KVADLF   VCKLHG+P+SL+SDRDPIFLS+FW+ELFR 
Sbjct: 254  VVDRFSKGVHFGMLPRSFTAAKVADLFTHMVCKLHGLPRSLISDRDPIFLSQFWRELFRL 313

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GTKLRMS+AYHPQ+DGQTE+ NK LQQYLRCF H++P  WGK L WAEW +NTSL+S+T
Sbjct: 314  SGTKLRMSTAYHPQTDGQTEVTNKILQQYLRCFVHHRPSLWGKLLPWAEWCFNTSLNSST 373

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            G TPF++++G  PPS+PQ L   +   A    +  R+ I++ L   L KAQ+NMK +AD 
Sbjct: 374  GYTPFEVMFGHPPPSIPQILNTETTNAAAHFEVHSREEIMKKLHSNLLKAQENMKHWADS 433

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
             R    F  GD VYV+LRP+RQ SV+G    KL KR++GP+++L+ IG VA+ ++LP S+
Sbjct: 434  HRRDLSFDVGDWVYVRLRPHRQSSVTGQYLGKLQKRFFGPFRVLEKIGAVAYRLDLPPSA 493

Query: 618  KIHPVFHVSQLKPCYGKEPQAP--DLPADTFNNQPVVKPLAVIDWKL 484
            KIH VFH+S L+P +G  P  P  +LP +  +NQP++ P+A+++WK+
Sbjct: 494  KIHNVFHISLLRPHHGPLPSPPPLNLPQEIEDNQPILTPVAILNWKM 540


>gb|PNX92763.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1410

 Score =  597 bits (1539), Expect = 0.0
 Identities = 292/523 (55%), Positives = 380/523 (72%), Gaps = 1/523 (0%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            VREL AIT+AVKKWR YLLG  F IHTD +SL+EL++Q+IQTPEQQ YL+KLLGY+++I 
Sbjct: 796  VRELHAITTAVKKWRQYLLGHPFTIHTDHKSLKELISQVIQTPEQQVYLSKLLGYDFKIQ 855

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YK G  N VADALSR+   S +CL +T+PH+ FL               L  +V+  P +
Sbjct: 856  YKSGKANVVADALSRVD--SPTCLTLTMPHFIFLDELRLSLQPSTEFTTLFHQVQQNPST 913

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            YP ++    LL++K K+++ S++PFK+ LL+EFH+S L GH GI KT  R+ EN YW  M
Sbjct: 914  YPNYKTHQGLLFYKNKIWLNSSNPFKQRLLQEFHNSPLSGHMGIQKTYIRLHENFYWQGM 973

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            + DV +FV  C  CQ TK+ T  P GLLQPLP+P+ +WED+SLDFI GLP     +VILV
Sbjct: 974  RDDVKHFVSNCLTCQATKYETKKPAGLLQPLPVPSAIWEDLSLDFITGLPPSHGFTVILV 1033

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDR SK AHFG LP+ F+A KVA LF   +CK HG+P+SLVSDRDPIF+S+FW+ELF+ 
Sbjct: 1034 VVDRFSKGAHFGALPSSFSAYKVAALFLDIICKHHGLPRSLVSDRDPIFISRFWRELFKL 1093

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GTKLRMS++YHP++DGQTE++N+ L+QYLR F H++P  W ++L  AEW YNT+ HS T
Sbjct: 1094 SGTKLRMSTSYHPETDGQTEVLNRILEQYLRSFVHSKPTHWHQFLPLAEWSYNTTSHSAT 1153

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            G +PF+I +GK PPS+P YL GSS VEAVDT L  R   +  L++KL KAQ+ MK +AD+
Sbjct: 1154 GRSPFEITFGKPPPSIPSYLLGSSNVEAVDTLLTTRQHTITLLQRKLLKAQETMKFYADQ 1213

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
            +R    +  GD VYVKLRPYRQ S++G    KLSKR+YGPYK+++ IG VA+++ELP  S
Sbjct: 1214 KRRELSYAVGDFVYVKLRPYRQQSLTGSTYSKLSKRFYGPYKIVERIGPVAYKLELPPQS 1273

Query: 618  KIHPVFHVSQLKPCYGKEPQAP-DLPADTFNNQPVVKPLAVID 493
            KIHPVFH S LK   G    AP DLP    +NQPV++PLA++D
Sbjct: 1274 KIHPVFHCSLLKQHRGPLTAAPDDLPPSNVDNQPVIQPLAILD 1316


>gb|KYP55632.1| Transposon Ty3-I Gag-Pol polyprotein [Cajanus cajan]
          Length = 934

 Score =  582 bits (1501), Expect = 0.0
 Identities = 279/527 (52%), Positives = 376/527 (71%), Gaps = 2/527 (0%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            +RELCAITSAV+KWR YLLGR FII+T+Q+S+++L++Q   TP+QQ YL KLLG+++EI 
Sbjct: 315  IRELCAITSAVQKWRQYLLGRHFIIYTNQQSIKDLLSQTALTPDQQSYLTKLLGFDFEIH 374

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YKPG  N VADALSRI   + S   I++   +FL              DL  ++   P S
Sbjct: 375  YKPGRSNTVADALSRILPETHSFFIISITQMDFLADLKRCLSRDNAFLDLKERLLQAPSS 434

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            +P   +  DL+  KGK+++P +    +LLL EFHS+ L GH G+ +TL +++ N +W++M
Sbjct: 435  FPDFSIHQDLILHKGKIWLPRSCSMIQLLLHEFHSTPLAGHPGVTRTLAKLQANFFWENM 494

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            + DV+ FV  C  CQ TK PT  P GLLQP+P P+  WED+SLDFI+GLP +Q ++ ILV
Sbjct: 495  RKDVLTFVAQCTTCQQTKVPTQRPLGLLQPIPPPSRCWEDLSLDFIIGLPPYQGHTTILV 554

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDR SK AHFGMLP  FTA+KVADLF   VCKLHG+P+SL+SDRDPIFLS+FW+ELFR 
Sbjct: 555  VVDRFSKGAHFGMLPRSFTAAKVADLFTHMVCKLHGLPRSLISDRDPIFLSQFWRELFRL 614

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GTKLRMS+AYHPQ+DGQTE+ NK LQQYLRCF H++P  WGK L WAEW +NTSL+S+T
Sbjct: 615  SGTKLRMSTAYHPQTDGQTEVTNKILQQYLRCFVHHRPSLWGKLLPWAEWCFNTSLNSST 674

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            G TPF++++G+ PPS+PQ L   +   A    +  R+ I+  L   L KAQ+NMK +AD 
Sbjct: 675  GYTPFEVMFGRPPPSIPQILNTETTNAAAHFEVHSREEIMTKLHSNLLKAQENMKHWADS 734

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
             R    F  GD VYV+LRP RQ SV+G    KL KR++GP+++L+ IG VA+ ++LP S+
Sbjct: 735  HRRDLSFDVGDWVYVRLRPRRQSSVTGQYLGKLQKRFFGPFRVLEKIGAVAYRLDLPPSA 794

Query: 618  KIHPVFHVSQLKPCYGKEPQAP--DLPADTFNNQPVVKPLAVIDWKL 484
            KIH VFH+S L+P  G  P  P  +LP +  +NQP++ P+A+++WK+
Sbjct: 795  KIHNVFHISLLRPHQGPLPSPPPLNLPPEIEDNQPILTPVAILNWKM 841


>dbj|GAU41853.1| hypothetical protein TSUD_366000 [Trifolium subterraneum]
          Length = 1524

 Score =  597 bits (1539), Expect = 0.0
 Identities = 290/526 (55%), Positives = 382/526 (72%), Gaps = 1/526 (0%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            +REL AIT+AVKKWR YLLG  F IHTD +SL+EL++Q+IQTPEQQ YL+KLLG++++I 
Sbjct: 891  IRELHAITTAVKKWRQYLLGHPFTIHTDHKSLKELISQVIQTPEQQVYLSKLLGFDFKIQ 950

Query: 1878 YKPGAQNRVADALSRIQDTSASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPDS 1699
            YK G  N VADALSR+ + +  CL +T+PH+ FL               L  +V+  P +
Sbjct: 951  YKSGKTNVVADALSRVDNPT--CLTLTMPHFIFLDELRLSLQPSTEFTTLSHQVQQNPAN 1008

Query: 1698 YPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDDM 1519
            YP ++    LL++K K+++ S++PFK  LL+EFH+S L GH GI KT  R+ EN YW  M
Sbjct: 1009 YPDYKTHQGLLFYKNKIWLNSSNPFKHRLLQEFHNSPLSGHMGIQKTYIRLHENFYWQGM 1068

Query: 1518 KSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVILV 1339
            + DV +FV  C  CQ TK+ T  P GLLQPLP+P+ +WED+SLDFI GLP     +VILV
Sbjct: 1069 RDDVKHFVSNCLTCQATKYETKKPAGLLQPLPVPSAIWEDLSLDFITGLPPSHGFTVILV 1128

Query: 1338 VVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFRF 1159
            VVDR SK AHFG LP+ F+A KVA LF   +CK HG+P+SLVSDRDPIF+S+FW+ELF+ 
Sbjct: 1129 VVDRFSKGAHFGALPSSFSAYKVAALFLDIICKYHGLPRSLVSDRDPIFISRFWRELFKL 1188

Query: 1158 NGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHSTT 979
            +GTKLRMS++YHP++DGQTE++N+ L+QYLR F H++P+ W ++L  AEW YNT+ HS T
Sbjct: 1189 SGTKLRMSTSYHPETDGQTEVLNRILEQYLRSFVHSKPNRWHQFLPLAEWSYNTTSHSAT 1248

Query: 978  GLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFADK 799
            G +PF++ +GK PPS+P YL GSS VEAVDT L  R   +  L++KL KAQ+ MK +ADK
Sbjct: 1249 GRSPFEVTFGKPPPSIPSYLLGSSNVEAVDTLLTTRQQTITVLQRKLLKAQEKMKFYADK 1308

Query: 798  RRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPESS 619
            +R    +  GD VYVKLRPYRQ S++G    KLSKR+YGPYK+++ IG VA+++ELP  S
Sbjct: 1309 KRRELSYVVGDFVYVKLRPYRQQSLTGSTCSKLSKRFYGPYKIVECIGPVAYKLELPPQS 1368

Query: 618  KIHPVFHVSQLKPCYGKEPQAP-DLPADTFNNQPVVKPLAVIDWKL 484
            KIHPVFH S LK   G    AP DLP    +NQPV++PLA++D K+
Sbjct: 1369 KIHPVFHCSLLKQHRGSLTAAPDDLPPSNIDNQPVIQPLAILDSKM 1414


>gb|PNY07310.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
 gb|PNY07311.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1494

 Score =  589 bits (1519), Expect = 0.0
 Identities = 287/526 (54%), Positives = 380/526 (72%), Gaps = 2/526 (0%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            +REL A+TSAVK+WR YLLG  FII TD +SL+EL+TQ+IQTPEQQFYL+KLLGY+Y+I 
Sbjct: 871  LRELHAVTSAVKRWRQYLLGHYFIIQTDHKSLKELLTQVIQTPEQQFYLSKLLGYHYDIQ 930

Query: 1878 YKPGAQNRVADALSRIQDTS-ASCLAITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPD 1702
            YKPG+ N VADALSR  D S AS +A++VP + F+              +L   ++  P 
Sbjct: 931  YKPGSTNTVADALSRSLDPSDASIMALSVPQFVFINELKQDLEADSTFQELRACIETDPA 990

Query: 1701 SYPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDD 1522
              P + V N L+ ++G+++I   S +K LLL+EFH + +GGH+GI KTL R+  N YW D
Sbjct: 991  GNPGYAVKNGLILYQGRIWISPTSHYKSLLLKEFHETPIGGHAGIIKTLKRLAANFYWSD 1050

Query: 1521 MKSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVIL 1342
            M+ +V  F+ +C +CQ TK+ T  P GLLQPLPIP+ VWEDIS+DF+ GLP     SVIL
Sbjct: 1051 MRKEVKQFIASCVICQQTKYSTAKPGGLLQPLPIPSNVWEDISMDFVTGLPQSNGYSVIL 1110

Query: 1341 VVVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFR 1162
            VVVDR SKA H G LP  FTA KVA+LF   VCK+HG+P+S+VSDRDPIF+SKFW +LF+
Sbjct: 1111 VVVDRFSKAVHLGALPAQFTAYKVAELFINMVCKIHGLPRSIVSDRDPIFISKFWADLFK 1170

Query: 1161 FNGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHST 982
            F+GT LRMSS+YHPQ+DGQTE+ N+T++QYLR F H +P  W ++L WAE+HYNT+ +++
Sbjct: 1171 FSGTLLRMSSSYHPQTDGQTEVTNRTIEQYLRAFVHAKPSIWFRFLPWAEYHYNTAYNTS 1230

Query: 981  TGLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFAD 802
            +GL+PFQ+++GK PPS+P Y  GSS V+A D  L DR +ILE L+K L KAQ  MK  AD
Sbjct: 1231 SGLSPFQVMFGKPPPSIPSYAIGSSSVDACDLLLSDRAAILELLRKNLLKAQQVMKHNAD 1290

Query: 801  KRRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPES 622
              R    +  G  VYVKL+PYRQ S++G + +KLSKR+YGP+++++ +G VA+++ELP  
Sbjct: 1291 AHRREVNYDAGTWVYVKLQPYRQTSLTGTKYNKLSKRFYGPFRIIERVGKVAYKLELPSY 1350

Query: 621  SKIHPVFHVSQLKPCYGKEPQ-APDLPADTFNNQPVVKPLAVIDWK 487
            SKIH VFH S LKP  G  P    DLP D  +N P+V PLA++  K
Sbjct: 1351 SKIHNVFHCSVLKPHIGSIPTVVDDLPHDAVDNHPLVSPLAILATK 1396


>gb|PNY17781.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1478

 Score =  584 bits (1505), Expect = 0.0
 Identities = 290/526 (55%), Positives = 375/526 (71%), Gaps = 2/526 (0%)
 Frame = -2

Query: 2058 VRELCAITSAVKKWRTYLLGRKFIIHTDQRSLRELMTQIIQTPEQQFYLAKLLGYNYEIV 1879
            +REL AIT+AVK+WR YLLG  FII TD RSL+EL+TQ+IQTPEQQ YL+KLLGYNYEI 
Sbjct: 866  IRELHAITAAVKRWRQYLLGNFFIIQTDHRSLKELLTQVIQTPEQQHYLSKLLGYNYEIQ 925

Query: 1878 YKPGAQNRVADALSRIQDTSASCL-AITVPHWEFLTXXXXXXXXXXXXXDLLTKVKLLPD 1702
            Y+PG  N  ADALSR      + L  +TVP+  F+              +L  K++  P 
Sbjct: 926  YRPGNTNLAADALSRASVIVTNELYLLTVPNLLFMEELRKELSTDSVYLELCRKIQADPS 985

Query: 1701 SYPKHRVLNDLLYFKGKLFIPSNSPFKELLLEEFHSSQLGGHSGIHKTLGRIKENVYWDD 1522
             +PK ++ N  L + G+++I  NS FK LLL+E+H S   GH+GI KT+ R+ EN YW+ 
Sbjct: 986  LFPKFKLTNGWLSYNGRIWISPNSRFKTLLLQEYHDSLSAGHAGISKTMKRLSENFYWEH 1045

Query: 1521 MKSDVVNFVKACHVCQHTKHPTHSPYGLLQPLPIPNGVWEDISLDFIVGLPSFQNNSVIL 1342
            MK DV N ++ C +CQ TK+ T  P GLLQPLPIPN +WED+S+DFI GLP  + +SVI 
Sbjct: 1046 MKQDVQNHIRHCTICQQTKYSTARPSGLLQPLPIPNHIWEDLSMDFITGLPLSKGHSVIF 1105

Query: 1341 VVVDRLSKAAHFGMLPTHFTASKVADLFAKTVCKLHGMPKSLVSDRDPIFLSKFWKELFR 1162
            VVVDR SK  H G L + FTA KVA+LF   VCK HG+P+S+VSDRDPIF+SKFW++LF+
Sbjct: 1106 VVVDRFSKGIHLGALSSGFTAYKVAELFVSIVCKHHGIPRSIVSDRDPIFISKFWRDLFK 1165

Query: 1161 FNGTKLRMSSAYHPQSDGQTEIVNKTLQQYLRCFSHNQPHTWGKYLHWAEWHYNTSLHST 982
            F+GT LRMSS+YHPQ+DGQTE++N+T++QYLR F H++P+ W   L W E+HYNTS HS 
Sbjct: 1166 FSGTFLRMSSSYHPQTDGQTEVMNRTIEQYLRAFVHDKPYNWVTLLPWVEYHYNTSTHSG 1225

Query: 981  TGLTPFQIVYGKEPPSLPQYLAGSSQVEAVDTALIDRDSILENLKKKLKKAQDNMKRFAD 802
            + L+PFQ+++GK PPS+P Y+AGSS +EA D+ L  RD IL  L+K L KAQ  MK  AD
Sbjct: 1226 SELSPFQVMFGKSPPSIPSYIAGSSSIEACDSVLQSRDEILTLLRKNLNKAQVRMKANAD 1285

Query: 801  KRRIPHPFKQGDLVYVKLRPYRQISVSGPRNHKLSKRYYGPYKLLKAIGDVAFEVELPES 622
            K R    F  G  VYVKL+PYRQIS+S  + HKL+KRYYGPY +   IG VA+++ELP  
Sbjct: 1286 KHRKEVNFDIGAWVYVKLQPYRQISLSRTKYHKLAKRYYGPYLISAKIGTVAYQLELPPH 1345

Query: 621  SKIHPVFHVSQLKPCYGKEPQAPD-LPADTFNNQPVVKPLAVIDWK 487
            +KIH VFHVS LK   G  PQ  D LPA + +N P+V PLA+++++
Sbjct: 1346 AKIHNVFHVSLLKLYEGPAPQQVDQLPAFSVDNHPIVSPLAILNFR 1391