BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00014087
         (2165 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP40818.1| Retrovirus-related Pol polyprotein from transposo...   618   0.0  
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   622   0.0  
gb|PNX81877.1| hypothetical protein L195_g037902, partial [Trifo...   601   0.0  
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   624   0.0  
gb|PNX85069.1| retrotransposon-related protein [Trifolium pratense]   585   0.0  
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            592   0.0  
gb|PRQ38020.1| putative RNA-directed DNA polymerase [Rosa chinen...   568   0.0  
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   590   0.0  
gb|KYP44586.1| Retrovirus-related Pol polyprotein from transposo...   572   0.0  
gb|PNY15642.1| copia-type polyprotein [Trifolium pratense]            573   0.0  
gb|PNX95763.1| retrotransposon-related protein, partial [Trifoli...   588   0.0  
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   586   0.0  
dbj|GAU13002.1| hypothetical protein TSUD_173010 [Trifolium subt...   578   0.0  
gb|KZV47100.1| retrovirus-related Pol polyprotein from transposo...   556   0.0  
dbj|GAU29997.1| hypothetical protein TSUD_160820 [Trifolium subt...   578   0.0  
gb|KZV40714.1| retrovirus-related Pol polyprotein from transposo...   552   0.0  
gb|KZV22085.1| retrovirus-related Pol polyprotein from transposo...   551   0.0  
gb|PRQ55184.1| putative RNA-directed DNA polymerase [Rosa chinen...   551   0.0  
gb|KYP69898.1| Retrovirus-related Pol polyprotein from transposo...   550   0.0  
emb|CAN72600.1| hypothetical protein VITISV_036712 [Vitis vinifera]   573   0.0  

>gb|KYP40818.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 468

 Score =  618 bits (1594), Expect = 0.0
 Identities = 306/467 (65%), Positives = 368/467 (78%), Gaps = 1/467 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK+NE G VEKYKARLVAKGY+QE+G+D+ EVFAPVARW+TIR I+A A   GW++YQLD
Sbjct: 34   TKFNEGGVVEKYKARLVAKGYAQEHGIDYSEVFAPVARWDTIRAIIATAVKNGWNIYQLD 93

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QPKGY K+GQE KVYRLKKALYGLKQA RAWYSKI++YFN  G
Sbjct: 94   VKSAFLHGDLEETVYVDQPKGYVKKGQELKVYRLKKALYGLKQAPRAWYSKIDNYFNSEG 153

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            FTKC+HEHTL+TK  D ++++IVS+YVD LIYTG                          
Sbjct: 154  FTKCAHEHTLYTKVIDSSNMIIVSLYVDDLIYTG-------------------------- 187

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
                  VLQ    IFINQ KY+ EVL RFGMA  KPV +P   G+KLSRND+ + +DSTM
Sbjct: 188  ------VLQREGSIFINQQKYILEVLDRFGMADCKPVCSPTVSGSKLSRNDEGEAIDSTM 241

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            +KQ+IGSLMYL+ATRPDI +SVS+VSRFME P E H++AAKRILRYLRGT D+GI Y R+
Sbjct: 242  FKQLIGSLMYLNATRPDIMFSVSMVSRFMENPKETHYVAAKRILRYLRGTTDLGIHYKRQ 301

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
            GK+ L ++CDSDYAGD DDRKSTSGY +L SSGA+SWSS+KQPIVTLSTTEAEFVAAAYC
Sbjct: 302  GKTDLTSYCDSDYAGDQDDRKSTSGYVFLLSSGAISWSSRKQPIVTLSTTEAEFVAAAYC 361

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
            VCQGIWIKRILEELG++ E  L++LCDNSS IKLS+NPV+HGRSKHIDVRFHFLRNLC +
Sbjct: 362  VCQGIWIKRILEELGVKLEESLSILCDNSSAIKLSKNPVMHGRSKHIDVRFHFLRNLCKE 421

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSDIPTSSK 767
            G+I+L +CT++ Q+ADVLTKALK +SF++ R+NLGM SL +I +++K
Sbjct: 422  GIIELKYCTTEEQLADVLTKALKKESFMRIRSNLGMCSLKEIISTAK 468


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  622 bits (1605), Expect = 0.0
 Identities = 299/456 (65%), Positives = 365/456 (80%), Gaps = 1/456 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE+G+VEK KARLVAKGY+Q+YG+D+ EVFAPVARW+TIR+++A+AA KGW VYQLD
Sbjct: 582  TKLNENGEVEKCKARLVAKGYAQQYGIDYTEVFAPVARWDTIRMVIALAAKKGWKVYQLD 641

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QP+GY K G E KVY+L KALYGLKQA RAWYS+IE+YF K G
Sbjct: 642  VKSAFLHGELTEAVFIDQPQGYVKEGDELKVYKLNKALYGLKQAPRAWYSRIEAYFIKEG 701

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F +C HEHTLF K  +   ILIVS+YVD LI+TG+++YM  EFKKSM++EFDMSDLG MR
Sbjct: 702  FERCPHEHTLFVKLSEGGKILIVSLYVDDLIFTGNDEYMFEEFKKSMKDEFDMSDLGMMR 761

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLGVEV+QN   I+I Q KY +E+L+RFGM  +  V NP+ PG KL +++    VD+TM
Sbjct: 762  YFLGVEVVQNEAGIYICQKKYASEILERFGMEKANSVRNPIVPGFKLMKDEGGVKVDATM 821

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            YKQ++GSLMYL+ATRPD+ Y VSL+SRFM  PTE H  AAKR+LRYL+GT ++G+LY R 
Sbjct: 822  YKQIVGSLMYLTATRPDLMYVVSLISRFMSSPTELHMQAAKRVLRYLKGTVNLGVLYRRN 881

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
            G+  LEAF DSDYAGD DDRKSTSGY ++FS GAVSWSSKKQP+VTLSTTEAEF+AAAYC
Sbjct: 882  GEEKLEAFTDSDYAGDVDDRKSTSGYIFMFSDGAVSWSSKKQPVVTLSTTEAEFIAAAYC 941

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQG+W++RI E LG  Q GC TV CDNSSTIKLS+NPV+HGRSKHIDVRFHFLR L  D
Sbjct: 942  ACQGVWMRRIFERLGHAQRGCTTVYCDNSSTIKLSKNPVMHGRSKHIDVRFHFLRQLTKD 1001

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGM 800
            G ++L +C +Q+Q+AD +TK LK + F K R+ LGM
Sbjct: 1002 GNVELVYCNTQDQIADAMTKPLKLEVFEKLRDLLGM 1037


>gb|PNX81877.1| hypothetical protein L195_g037902, partial [Trifolium pratense]
          Length = 575

 Score =  601 bits (1549), Expect = 0.0
 Identities = 292/451 (64%), Positives = 361/451 (80%), Gaps = 1/451 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE+G+VEKYKARLVAKGYSQ+YGVD+ EVFAPVARW+TIR+++A+AA KGW+VYQLD
Sbjct: 125  TKLNENGEVEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQKGWNVYQLD 184

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QP+GY K+G E KVY+LK+ALYGLKQA RAWYS+IE+YF K G
Sbjct: 185  VKSAFLHGELNEQVFVDQPQGYVKKGDELKVYKLKRALYGLKQAPRAWYSRIEAYFTKEG 244

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F +C +EHTLF K+ +  +ILIVS+YVD LI+TG+++ M  EFKKSM +EF+MSDLGKM 
Sbjct: 245  FERCPYEHTLFVKQSETGNILIVSLYVDDLIFTGNDENMFKEFKKSMEKEFNMSDLGKMH 304

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLGVEV+QN   I+I Q KYV ++L+RFGM  S    NP+ PG KL ++++   VD+TM
Sbjct: 305  YFLGVEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPGCKLIKDENGVKVDATM 364

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            YKQV+G LMYL+ATRPD+ Y +SL+SRFM  PTE H  A KR+LRYL GT ++GI+Y R 
Sbjct: 365  YKQVVGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRG 424

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
            G   LEA+ DSDYAGD DDRKSTSGY ++ S+GAVSWSSKKQP+VTLSTTEAEF+AAA C
Sbjct: 425  GNEKLEAYTDSDYAGDLDDRKSTSGYVFMLSAGAVSWSSKKQPVVTLSTTEAEFIAAASC 484

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQ IW++R+LE+LG  Q G +TV CDNSSTIKLS+NPVLHGRSKHIDVRFHFLR+L  D
Sbjct: 485  ACQSIWMQRVLEKLGHIQVGSITVYCDNSSTIKLSKNPVLHGRSKHIDVRFHFLRDLTKD 544

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQR 815
            G ++L  C SQ Q+AD++TK LK + F K R
Sbjct: 545  GTLELVHCNSQYQIADIMTKPLKFEVFEKLR 575


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  624 bits (1610), Expect = 0.0
 Identities = 299/456 (65%), Positives = 365/456 (80%), Gaps = 1/456 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE+G+VEK KARLVAKGY+Q+YG+D+ EVFAPVARW+TIR+++A+AA KGW VYQLD
Sbjct: 854  TKLNENGEVEKCKARLVAKGYAQQYGIDYTEVFAPVARWDTIRMVIALAAQKGWKVYQLD 913

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QP+GY K G E KVY+L KALYGLKQA RAWYS+IE+YF K G
Sbjct: 914  VKSAFLHGELTEAVFIDQPQGYVKEGDELKVYKLNKALYGLKQAPRAWYSRIEAYFIKEG 973

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F +C HEHTLF K  +   ILIVS+YVD LI+TG+++YM  EFKKSM++EFDMSDLG MR
Sbjct: 974  FERCPHEHTLFVKSSEGGKILIVSLYVDDLIFTGNDEYMFEEFKKSMKDEFDMSDLGMMR 1033

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLGVEV+QN   I+I Q KY +E+L+RFGM  +  V NP+ PG KL +++    VD+TM
Sbjct: 1034 YFLGVEVVQNEAGIYICQKKYASEILERFGMEKANSVRNPIVPGIKLMKDEGGVKVDATM 1093

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            YKQ++GSLMYL+ATRPD+ Y VSL+SRFM  PTE H  AAKR+LRYL+GT ++G+LY R 
Sbjct: 1094 YKQIVGSLMYLTATRPDLMYVVSLISRFMSSPTELHMQAAKRVLRYLKGTINLGVLYRRN 1153

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
            G+  LEAF DSDYAGD DDRKSTSGY ++FS GAVSWSSKKQP+VTLSTTEAEF+AAAYC
Sbjct: 1154 GEEKLEAFTDSDYAGDVDDRKSTSGYIFMFSDGAVSWSSKKQPVVTLSTTEAEFIAAAYC 1213

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQG+W++RI E LG  Q GC TV CDNSSTIKLS+NPV+HGRSKHIDVRFHFLR L  D
Sbjct: 1214 ACQGVWMRRIFERLGHAQRGCTTVYCDNSSTIKLSKNPVMHGRSKHIDVRFHFLRQLTKD 1273

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGM 800
            G ++L +C +Q+Q+AD +TK LK + F K R+ LGM
Sbjct: 1274 GTVELVYCNTQDQIADAMTKPLKLEVFEKLRDLLGM 1309



 Score =  131 bits (329), Expect(2) = 2e-43
 Identities = 63/91 (69%), Positives = 79/91 (86%)
 Frame = -1

Query: 278 QAIERSILETILNANSVKDIWYSLKQKYQGSSRVKRAQLQALRYEFEALRIKEGESVQDY 99
           QAI+R+I+ETILN  + K IW S++QKYQGS++VKRAQLQALR EFE L++K+GE V +Y
Sbjct: 76  QAIDRTIMETILNKETAKHIWDSMRQKYQGSTKVKRAQLQALRREFEVLQMKDGEIVDEY 135

Query: 98  FARTMSIVNKMKSHGENMTETVVVEKILRSM 6
           FART++I NKMK+HGENM E V+VEKILRSM
Sbjct: 136 FARTLTIANKMKAHGENMIELVIVEKILRSM 166



 Score = 75.9 bits (185), Expect(2) = 2e-43
 Identities = 30/39 (76%), Positives = 36/39 (92%)
 Frame = -2

Query: 439 SYVQPAIPKFDGHYVHWAMLMENLLRSKEYWEVVENGVP 323
           ++VQPAIP+FDGHY HW+MLMEN LRSKEYW +VENG+P
Sbjct: 6   NFVQPAIPRFDGHYDHWSMLMENFLRSKEYWSLVENGIP 44


>gb|PNX85069.1| retrotransposon-related protein [Trifolium pratense]
          Length = 538

 Score =  585 bits (1509), Expect = 0.0
 Identities = 288/462 (62%), Positives = 360/462 (77%), Gaps = 1/462 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE+G+V+KYKARLVAKGY+Q++GVD+ EVFAPVAR +T+R+I+A+AA +GW +YQLD
Sbjct: 76   TKLNENGEVDKYKARLVAKGYAQQFGVDYTEVFAPVARMDTVRMIVALAAQRGWIIYQLD 135

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           EQP+GYEK+    KVY+LKKALYGLKQA R+W+S+IE+YF K G
Sbjct: 136  VKSAFLHGELNEDVFVEQPRGYEKKDSPNKVYKLKKALYGLKQAPRSWFSRIEAYFVKEG 195

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F KC  EHTLF K   +  ILIVSIYVD LI+TG ++ M  +FK SM  EFDMSDLGKMR
Sbjct: 196  FLKCHSEHTLFVKISKEGKILIVSIYVDDLIFTGDDESMFEDFKNSMMHEFDMSDLGKMR 255

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLG+EVLQ +  I+I Q KY  EVL+RFGM  S  V NP+ PG K+ ++ +   VD+T 
Sbjct: 256  YFLGIEVLQRNDGIYICQKKYALEVLRRFGMEGSNSVHNPIVPGFKICKDKEGVKVDATF 315

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            +KQV+GSLMYL+ TRPD+ + VSL+SR+M +PTE H  AAKR+LRYL+GTAD GI Y + 
Sbjct: 316  FKQVVGSLMYLTTTRPDLMFVVSLISRYMAQPTELHLQAAKRVLRYLKGTADFGIFYKKG 375

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
            G  +L A+ DSDYAGD +DRKSTSGY +L SSGAVSWSSKKQPIVTLSTTEAEFVAAAYC
Sbjct: 376  GSENLVAYADSDYAGDLEDRKSTSGYVFLMSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 435

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
              Q +W++RIL++LG  Q G   + CDNSSTIKLS+NPVLHGR KHIDVRFHFLR+L  +
Sbjct: 436  ASQIVWMRRILDKLGHSQSGSTVMFCDNSSTIKLSKNPVLHGRCKHIDVRFHFLRDLTKE 495

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSDI 782
            G+++L FC +Q QVADV+TK LK D F+K R+ LG+  + ++
Sbjct: 496  GIVELVFCGTQEQVADVMTKPLKLDIFLKLRSLLGVCQIPEV 537


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  592 bits (1526), Expect = 0.0
 Identities = 287/462 (62%), Positives = 365/462 (79%), Gaps = 1/462 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE+G+++KYKARLVAKGY+Q+YGVD+ EVFAPVAR +TIR+ILA+AA   W V+QLD
Sbjct: 885  TKLNENGQIDKYKARLVAKGYAQQYGVDYTEVFAPVARLDTIRLILALAAQHSWDVFQLD 944

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QP GYEK+G+E KVY+LKKALYGLKQA RAWYSKIE+YF + G
Sbjct: 945  VKSAFLHGELNEEVFVKQPLGYEKKGEEDKVYKLKKALYGLKQAPRAWYSKIEAYFVREG 1004

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F KC  EHTLFTK  + + +LIVS+YVD LIYTG++  M  EFK SM  EFDMSDLG+MR
Sbjct: 1005 FEKCFCEHTLFTKTKEGSKLLIVSLYVDDLIYTGNDRIMCEEFKNSMMVEFDMSDLGRMR 1064

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLG+EV+QN   IF+ Q +Y +EVL RFGM  S  V NP+ PGTKLS+N++   VD+T+
Sbjct: 1065 YFLGIEVIQNPNGIFVCQRRYAHEVLVRFGMNNSNSVQNPIVPGTKLSKNNEETKVDATL 1124

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            Y +++GSLMYL+ATRPD+ Y VSL+SRFM  PTE+H++AAKRILRYL+GT ++GI Y + 
Sbjct: 1125 YMKMVGSLMYLTATRPDLMYGVSLISRFMSCPTESHWLAAKRILRYLKGTTELGIFYKKG 1184

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
              S+L A+ DSD+AGD DDR+STSG+ +L  S AVSWSSKKQPIVTLSTTEAE+VAAA C
Sbjct: 1185 DNSNLVAYTDSDFAGDLDDRRSTSGFVFLLGSAAVSWSSKKQPIVTLSTTEAEYVAAASC 1244

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQ +W+KR+LE+LG +++    + CDNSSTIKLS+N V HGRSKHID++FHFLR+L  D
Sbjct: 1245 ACQCLWLKRVLEKLGHKEKRSTMIQCDNSSTIKLSKNSVFHGRSKHIDIKFHFLRDLVKD 1304

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSDI 782
            GV++L +C SQ QVAD++TK +K D ++K R  +GM+  S I
Sbjct: 1305 GVVELSYCNSQEQVADIMTKPIKLDQYLKLRKMMGMVEASKI 1346



 Score =  125 bits (313), Expect(2) = 4e-44
 Identities = 59/91 (64%), Positives = 77/91 (84%)
 Frame = -1

Query: 278 QAIERSILETILNANSVKDIWYSLKQKYQGSSRVKRAQLQALRYEFEALRIKEGESVQDY 99
           QAI R +LETIL+  + K IW S+KQK+QGS+RVKRAQLQALR +FE L +KEGE+V  Y
Sbjct: 78  QAISRDVLETILDKETSKSIWESMKQKFQGSNRVKRAQLQALRKDFEILHMKEGETVNAY 137

Query: 98  FARTMSIVNKMKSHGENMTETVVVEKILRSM 6
           F+RT++I NKMK+HGE+M++T++ EKILRSM
Sbjct: 138 FSRTLTIANKMKAHGESMSQTIITEKILRSM 168



 Score = 84.7 bits (208), Expect(2) = 4e-44
 Identities = 36/54 (66%), Positives = 43/54 (79%)
 Frame = -2

Query: 460 MAEKESGSYVQPAIPKFDGHYVHWAMLMENLLRSKEYWEVVENGVPVLEANTTP 299
           MAE +S  +VQ AIPKFDGHY HWAMLMEN LRSKEYW+++ENG+ V+ A   P
Sbjct: 1   MAESDSSGFVQSAIPKFDGHYDHWAMLMENFLRSKEYWDLIENGILVMAAGVEP 54


>gb|PRQ38020.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 610

 Score =  568 bits (1463), Expect = 0.0
 Identities = 279/456 (61%), Positives = 349/456 (76%), Gaps = 1/456 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TKYNE G+V+K KARLVAKGY+Q +G+D+ EV+APVARW+TIR+I+A+AA K WS+YQLD
Sbjct: 148  TKYNEKGEVDKCKARLVAKGYAQRFGIDYTEVYAPVARWDTIRMIIALAAQKNWSIYQLD 207

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           EQP+G+E +G E KVY+LKKALYGLKQA RAWYS+IE+YF K G
Sbjct: 208  VKSAFLHGELTEAVFVEQPQGFEVKGGENKVYKLKKALYGLKQAPRAWYSRIENYFVKEG 267

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F KC  EHTLF K G     LIVS+YVD LI+TG+ + M  +FK+SM +EFDMSDLGKMR
Sbjct: 268  FEKCDFEHTLFIKMGAGGKCLIVSLYVDDLIFTGNCEKMFVKFKESMMQEFDMSDLGKMR 327

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLGVEVLQ    I+I+Q K+  E+L+RFGM     V NP+ PG K+ ++++   VD+T 
Sbjct: 328  YFLGVEVLQCTEGIYISQKKFAKELLERFGMDGCNSVHNPIVPGVKIGKDENGVRVDATT 387

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            YKQ++GSLMYL+ TRPD+ + V + SRFM  PTE HF   KR+LRY+ GT ++GI Y + 
Sbjct: 388  YKQMVGSLMYLTVTRPDLMFVVCMASRFMANPTELHFQIVKRVLRYVGGTVELGIFYKKR 447

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
            G   L+A+ DSDYAGD  DR+STSGY +  S GAVSW SKKQP+VTLSTTEAE+VAAA C
Sbjct: 448  GDQMLQAYTDSDYAGDVSDRRSTSGYVFSLSGGAVSWMSKKQPVVTLSTTEAEYVAAASC 507

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
              QGIW++R+LE+LG+ Q   + + CDNSSTIKLS+NPVLHGRSKHIDVRFHFLR+L  D
Sbjct: 508  ATQGIWMQRVLEKLGLTQNCSVIIKCDNSSTIKLSKNPVLHGRSKHIDVRFHFLRDLTRD 567

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGM 800
            G +KL  C S++QVAD++TK LK D FVK R  LG+
Sbjct: 568  GKVKLVHCGSKDQVADIMTKPLKLDEFVKLRELLGV 603


>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  590 bits (1521), Expect = 0.0
 Identities = 292/462 (63%), Positives = 359/462 (77%), Gaps = 1/462 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TKYNE GK++KYKARLVAKGYSQ++GVD+ EV+APVAR +TIR+I+A+AA+K W ++QLD
Sbjct: 864  TKYNEHGKIDKYKARLVAKGYSQKHGVDYTEVYAPVARMDTIRMIIAIAAHKNWQIFQLD 923

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           EQP+GYEK G E  VY+L KALYGLKQA RAW+S+IE++F   G
Sbjct: 924  VKSAFLHGKLDEDVYVEQPRGYEKIGSEHLVYKLHKALYGLKQAPRAWFSRIEAHFIGEG 983

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F  C  E TLFTK+ ++  I+IVS+YVD LI+TG+ + M+SEFK SM  EFDMSDLGKMR
Sbjct: 984  FQMCDSEQTLFTKRSNEGKIIIVSVYVDDLIFTGNCEVMMSEFKNSMLREFDMSDLGKMR 1043

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLG+EVLQ    I+I Q KY +EVLKRFGM  S  VT+P+ PG K+SRN D  +VD T 
Sbjct: 1044 YFLGIEVLQKPDGIYICQRKYASEVLKRFGMMESNLVTSPIVPGFKVSRNGDGNIVDETY 1103

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            YKQ++GSLMYL+ATRPD+ ++  L+SR+M KP + H  AAKR+LRYL+GT + GI Y + 
Sbjct: 1104 YKQLVGSLMYLTATRPDMMFATCLISRYMTKPMQTHLQAAKRLLRYLKGTVNYGIYYKKG 1163

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
            G   L AF DSDYAGD +DRKSTSGY +L SSGAVSW SKKQPIVTLSTTEAEFVAAA C
Sbjct: 1164 GDGELLAFTDSDYAGDEEDRKSTSGYVFLMSSGAVSWCSKKQPIVTLSTTEAEFVAAAVC 1223

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQG+W+KRILEELG     C++++CDNSSTIKLS+NPV+HGRSKHIDVRFHFLRNL   
Sbjct: 1224 ACQGVWMKRILEELGHSCGDCISIMCDNSSTIKLSKNPVMHGRSKHIDVRFHFLRNLSKK 1283

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSDI 782
            G I+L  C SQ+QVAD++TK LK + F K R  LG+  + +I
Sbjct: 1284 GEIELIHCRSQDQVADIMTKPLKLEVFQKLRKLLGVCEIPNI 1325



 Score =  107 bits (266), Expect(2) = 1e-35
 Identities = 49/91 (53%), Positives = 72/91 (79%)
 Frame = -1

Query: 278 QAIERSILETILNANSVKDIWYSLKQKYQGSSRVKRAQLQALRYEFEALRIKEGESVQDY 99
           QAI+R++L TIL  ++ K+IW ++K+KY+G+ RVKR+ LQALR EFE L ++E E + +Y
Sbjct: 76  QAIDRTVLNTILKKDTSKEIWDAMKKKYEGNERVKRSHLQALRREFEILEMREDEGMTEY 135

Query: 98  FARTMSIVNKMKSHGENMTETVVVEKILRSM 6
           F+R M++ NKM+ +GENM +  VVEKILRS+
Sbjct: 136 FSRVMTVANKMRIYGENMPDVKVVEKILRSL 166



 Score = 74.3 bits (181), Expect(2) = 1e-35
 Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
 Frame = -2

Query: 442 GSYVQPAIPKFDGHYVHWAMLMENLLRSKEYWEVVENGV--PVLEANTTPELKKTHDKL 272
           GS+VQPAIP+FDGHY HW+MLMEN LRSKEYWE+++ G   P      T   +K +D++
Sbjct: 5   GSFVQPAIPRFDGHYDHWSMLMENFLRSKEYWELIDPGFVEPASGTTQTEVQRKKNDEM 63


>gb|KYP44586.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 783

 Score =  572 bits (1475), Expect = 0.0
 Identities = 282/462 (61%), Positives = 356/462 (77%), Gaps = 1/462 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK  E G+++K+KARLVAKGY+QE G+D+ E+FAPVAR ET+R ++A+AA K WS+YQLD
Sbjct: 315  TKLKETGEIDKFKARLVAKGYTQEEGIDYGEIFAPVARLETVRTVIAIAATKRWSIYQLD 374

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            +KSAF           EQP GY  +G+E +VY+LKKALYGLKQA RAWYSK+ES+    G
Sbjct: 375  IKSAFLHGEINEDVYLEQPPGYVCQGREHQVYKLKKALYGLKQAPRAWYSKLESHLVTNG 434

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F KC HEHTLF KK + + ILIV  YVD LIYTGS++ M  +FK  M  EF M+DLGKMR
Sbjct: 435  FLKCPHEHTLFLKK-EGSEILIVCFYVDDLIYTGSDELMFQQFKTIMMNEFAMTDLGKMR 493

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLG+EVLQ+   I+I Q KY+ ++L RF M+    V NP+ PGT+L + D    VDST+
Sbjct: 494  YFLGIEVLQSCTGIYIGQKKYIKDMLNRFDMSDCNSVKNPIAPGTRLLKEDKGTEVDSTI 553

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            YKQ++GSLMYL+ATRPDI++SVSL+SRFME P E+HFIAAKRILRYL+GT ++GI Y   
Sbjct: 554  YKQLVGSLMYLTATRPDIAHSVSLISRFMEHPKESHFIAAKRILRYLQGTQNLGIFYKAG 613

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
                L A+ DSDYAGD +DRKSTSGYA+L + G +SW SKKQP+V+LSTTEAEF+AAA C
Sbjct: 614  INEELFAYTDSDYAGDLEDRKSTSGYAFLLAGGVISWVSKKQPVVSLSTTEAEFIAAALC 673

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQ +W++RILE L   Q G   + CDN STIKLS+NPVLHGRSKHIDVRFHFLRNLC D
Sbjct: 674  ACQCVWLRRILEHLDHYQVGATVMFCDNVSTIKLSKNPVLHGRSKHIDVRFHFLRNLCND 733

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSDI 782
            GVI+L+FC+++NQ+AD++TK LK + F + R+ LGM+  S+I
Sbjct: 734  GVIELNFCSTKNQLADIMTKPLKVEDFQRLRSALGMLEDSEI 775


>gb|PNY15642.1| copia-type polyprotein [Trifolium pratense]
          Length = 822

 Score =  573 bits (1478), Expect = 0.0
 Identities = 282/462 (61%), Positives = 358/462 (77%), Gaps = 3/462 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TKYNE+G++EK+KARLVAKGY+Q+YGVDF EVFAPVARW+TIR IL++AA+K W ++QLD
Sbjct: 359  TKYNEEGRIEKHKARLVAKGYAQKYGVDFSEVFAPVARWDTIRTILSLAASKNWCIFQLD 418

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QP G++  G++ +VY+LKKALYGLKQA RAWYSKI+SYF+   
Sbjct: 419  VKSAFLHGELLENVYVQQPLGFQV-GEKNQVYKLKKALYGLKQAPRAWYSKIQSYFDTEK 477

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F KCSHEHTLF K G+K  ILIVS+YVD LIYTG++  M+ EFK SM+++F M+DLGKM+
Sbjct: 478  FMKCSHEHTLFVKYGEKGKILIVSLYVDDLIYTGNDKQMMEEFKGSMKKKFAMTDLGKMK 537

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLGVEV Q  + IFINQ KY +++L RFGM     V  P+ PG KL ++++ +  D+T 
Sbjct: 538  YFLGVEVNQTQQGIFINQQKYASDILTRFGMQDCNKVCTPIVPGCKLVKDENGRPADATS 597

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSR- 1271
            YKQ+IG LMYL ATRPD++YSV L +R+M+KPTE H IA KRI+RYL+GT   GILY   
Sbjct: 598  YKQMIGCLMYLLATRPDLTYSVCLAARYMDKPTEMHVIAVKRIMRYLKGTMSYGILYKST 657

Query: 1270 -EGKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAA 1094
             E   +L  + DSDYAGD+DDRKSTSGY +   +GA+SWSSKKQPIVTLSTTEAEF+AAA
Sbjct: 658  DEENVTLVGWTDSDYAGDYDDRKSTSGYVFSIGTGAISWSSKKQPIVTLSTTEAEFIAAA 717

Query: 1093 YCVCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLC 914
               CQGIW++ +L++L  EQ  C T+ CDNSS+IKLS+NPV+HGRSKHIDVR+HFLR+L 
Sbjct: 718  SSACQGIWLRNVLKQLRQEQVTCTTIYCDNSSSIKLSKNPVMHGRSKHIDVRYHFLRDLN 777

Query: 913  TDGVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLS 788
             DGVI+L  C +  Q+AD++TKALK D+F K R  LG+   S
Sbjct: 778  NDGVIELKHCRTNEQLADIMTKALKVDTFCKLREELGICDSS 819


>gb|PNX95763.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1327

 Score =  588 bits (1517), Expect = 0.0
 Identities = 285/458 (62%), Positives = 361/458 (78%), Gaps = 1/458 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE G VEKYKARLVAKGY+Q+YG+D+ EVFAPVAR +TIR+ILA AA   W VYQLD
Sbjct: 867  TKLNEHGNVEKYKARLVAKGYAQQYGIDYTEVFAPVARLDTIRLILATAAQNKWEVYQLD 926

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QP G+EK+G+E KVY+L KALYGLKQA RAWYS+IESYF + G
Sbjct: 927  VKSAFLQGELKEEVYVQQPTGFEKKGEEDKVYKLNKALYGLKQAPRAWYSRIESYFIREG 986

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F +C+ EHTLFTK+ +   ILIVS+YVD LIYTG+N+ +  EFK SM  EFDMSDLGKM 
Sbjct: 987  FERCASEHTLFTKEKEGGKILIVSLYVDDLIYTGNNESICEEFKMSMMHEFDMSDLGKMS 1046

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLG+E++QN + IF+ Q KY  EVL RFGM+ SKPV NP+ PGT+LS+++    +DSTM
Sbjct: 1047 YFLGMEIIQNSKGIFMCQRKYAREVLARFGMSDSKPVGNPIVPGTRLSKDEKGTKIDSTM 1106

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            +KQV+GSLMYL+ATRPDI + VSL+SR+M  PTE H+ AAKRILRY+ GT ++GILY  E
Sbjct: 1107 FKQVVGSLMYLTATRPDIMFGVSLISRYMSSPTEEHWCAAKRILRYINGTIEMGILYKGE 1166

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
              + L A+ DSD+AGD +DRKSTSG+A+L + GAVSW+SKKQP+VTLSTTEAE++AAA C
Sbjct: 1167 SITELVAYTDSDFAGDLNDRKSTSGFAFLLAGGAVSWASKKQPVVTLSTTEAEYIAAASC 1226

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQ IW+ R+LE+LG + E    + CDNSSTI+LS++ V HG+SKHIDV+FHFLR+L  +
Sbjct: 1227 ACQYIWLTRLLEKLGHKGEEGSIMYCDNSSTIQLSKHSVFHGKSKHIDVKFHFLRDLVNE 1286

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMIS 794
            G +KL +C +QNQVAD++TK LK + F+K R  LG++S
Sbjct: 1287 GTVKLKYCNTQNQVADIMTKPLKKEQFIKLREMLGLMS 1324



 Score =  103 bits (257), Expect(2) = 1e-29
 Identities = 47/90 (52%), Positives = 72/90 (80%)
 Frame = -1

Query: 275 AIERSILETILNANSVKDIWYSLKQKYQGSSRVKRAQLQALRYEFEALRIKEGESVQDYF 96
           AI+++IL+TIL  ++   +W S+++KYQGS RV+RAQLQALR EFE L +KEGE++ +YF
Sbjct: 76  AIDKTILKTILQKDTSAQLWESMRRKYQGSKRVQRAQLQALRREFEILEMKEGETIVEYF 135

Query: 95  ARTMSIVNKMKSHGENMTETVVVEKILRSM 6
           +R M++ N M+++GE M +  +VEKILR++
Sbjct: 136 SRVMTVANNMRNNGEAMQDIQIVEKILRTL 165



 Score = 57.8 bits (138), Expect(2) = 1e-29
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = -2

Query: 424 AIPKFDGHYVHWAMLMENLLRSKEYWEVVENGVPVLEA 311
           +IPKFDG Y HW+MLMENLLRSKE+W +++ G   L+A
Sbjct: 10  SIPKFDGDYDHWSMLMENLLRSKEWWHLIDPGYVELDA 47


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  586 bits (1511), Expect = 0.0
 Identities = 285/455 (62%), Positives = 347/455 (76%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE+G+V+K KARLVAKGY+Q+YG+D+ EVFAPVARW+TIR+++A+AA KGW VYQLD
Sbjct: 862  TKLNENGEVDKCKARLVAKGYAQQYGIDYTEVFAPVARWDTIRMVIALAAQKGWKVYQLD 921

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QP+GY K+G E KVY+L KALYGLKQA RAWYS+IE+YF K G
Sbjct: 922  VKSAFLHGELTEAIFIDQPQGYVKKGDELKVYKLNKALYGLKQAPRAWYSRIEAYFIKEG 981

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVDLIYTGSNDYMISEFKKSMREEFDMSDLGKMRF 1625
            F +C HEHTLF K      ILI                     KSM++EFDMSDLG MR+
Sbjct: 982  FERCPHEHTLFVKSSKGGKILI---------------------KSMKDEFDMSDLGMMRY 1020

Query: 1624 FLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTMY 1445
            FLGVEV+QN   I+I Q KY +E+L+RFGM  S  V NP+ PG KL +++    VD+TMY
Sbjct: 1021 FLGVEVVQNEAGIYICQKKYASEILERFGMEKSNSVRNPIVPGFKLMKDEGGVKVDATMY 1080

Query: 1444 KQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSREG 1265
            KQ++GSLMYL+ATRPD+ Y VSL+SRFM  PTE H  AAKR+LRYL+GT ++G+LY R G
Sbjct: 1081 KQIVGSLMYLTATRPDLMYVVSLISRFMSSPTELHMQAAKRVLRYLKGTINLGVLYRRNG 1140

Query: 1264 KSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYCV 1085
            +  LEAF DSDYAGD DDRKSTSGY ++FS GAVSWSSKKQP+VTLSTTEAEF+AAAYC 
Sbjct: 1141 EEKLEAFTDSDYAGDVDDRKSTSGYIFMFSDGAVSWSSKKQPVVTLSTTEAEFIAAAYCA 1200

Query: 1084 CQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTDG 905
            CQG+W++RI + LG  Q GC TV CDNSSTIKLS+NPV+HGRSKHIDVRFHFLR L  DG
Sbjct: 1201 CQGVWMRRIFKRLGHTQRGCTTVYCDNSSTIKLSKNPVMHGRSKHIDVRFHFLRQLTNDG 1260

Query: 904  VIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGM 800
            +++L +C +Q+Q+AD +TK LK D F K R+ LGM
Sbjct: 1261 IVELVYCNTQDQIADAMTKPLKLDVFEKLRDLLGM 1295



 Score =  131 bits (330), Expect(2) = 2e-43
 Identities = 63/91 (69%), Positives = 79/91 (86%)
 Frame = -1

Query: 278 QAIERSILETILNANSVKDIWYSLKQKYQGSSRVKRAQLQALRYEFEALRIKEGESVQDY 99
           QAI+R+I+ETILN  + K IW S++QKYQGS++VKRAQLQALR EFE L++KEGE+V +Y
Sbjct: 76  QAIDRTIIETILNKETAKHIWDSMRQKYQGSTKVKRAQLQALRREFEVLQMKEGETVDEY 135

Query: 98  FARTMSIVNKMKSHGENMTETVVVEKILRSM 6
           FART++I NKMK+H ENM E V+VEKILRSM
Sbjct: 136 FARTLTIANKMKAHSENMAELVIVEKILRSM 166



 Score = 75.9 bits (185), Expect(2) = 2e-43
 Identities = 30/39 (76%), Positives = 36/39 (92%)
 Frame = -2

Query: 439 SYVQPAIPKFDGHYVHWAMLMENLLRSKEYWEVVENGVP 323
           ++VQPAIP+FDGHY HW+MLMEN LRSKEYW +VENG+P
Sbjct: 6   NFVQPAIPRFDGHYDHWSMLMENFLRSKEYWSLVENGIP 44


>dbj|GAU13002.1| hypothetical protein TSUD_173010 [Trifolium subterraneum]
          Length = 1126

 Score =  578 bits (1490), Expect = 0.0
 Identities = 283/456 (62%), Positives = 359/456 (78%), Gaps = 1/456 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK+NE+G+V+K+KARLVAKGY+Q++G+DF EVFAPVARW+TIR ILA+AA+KGW VYQLD
Sbjct: 668  TKFNENGEVDKHKARLVAKGYTQQHGIDFNEVFAPVARWDTIRTILAIAASKGWIVYQLD 727

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QP GY K  +  KVY+L+KALYGLKQA RAWYSKIESYFN+  
Sbjct: 728  VKSAFLHGDLVENVYVDQPPGYNK--EIGKVYKLRKALYGLKQAPRAWYSKIESYFNQEK 785

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F KC HEHTLF K+  K +ILIVS+YVD LIYTG+N+ M  EFK+SM+ +F M+DLG+MR
Sbjct: 786  FEKCPHEHTLFVKQDKKGNILIVSLYVDDLIYTGNNEAMFEEFKQSMKSQFSMTDLGRMR 845

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            FFLGVEV Q    IF+ Q KY  E+L+RF M     V +P+ PG KL R+++ K VD T 
Sbjct: 846  FFLGVEVKQLDSGIFVYQQKYARELLERFHMDQCNVVCSPIVPGNKLIRDENGKTVDVTN 905

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            Y+Q++G LMYL ATRPD++YSV L++R+ME+PTE H  AAKR++RYL+GT D+GILY R 
Sbjct: 906  YRQIVGCLMYLLATRPDLTYSVCLIARYMERPTEIHLAAAKRVMRYLKGTLDLGILYRRN 965

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
             +  L+ + DSDYAGD DDRKSTSGY ++  S  +SWSSKKQ IVTLSTTEAEFVAAA C
Sbjct: 966  EEMKLQGWSDSDYAGDLDDRKSTSGYVFMLGSSIISWSSKKQAIVTLSTTEAEFVAAASC 1025

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQ IW++R+LE+LG +Q GC+ + CDNSS+IKLS+NPV+HGR KHIDVR+HF R+L  +
Sbjct: 1026 ACQSIWLRRVLEQLGQKQ-GCVKIHCDNSSSIKLSKNPVMHGRCKHIDVRYHFFRDLTKE 1084

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGM 800
             V++L +C +Q+QVADV+TKALK ++F K RN LG+
Sbjct: 1085 NVVELIYCNTQDQVADVMTKALKLEAFCKFRNMLGI 1120



 Score = 91.3 bits (225), Expect = 4e-15
 Identities = 44/68 (64%), Positives = 57/68 (83%)
 Frame = -1

Query: 209 LKQKYQGSSRVKRAQLQALRYEFEALRIKEGESVQDYFARTMSIVNKMKSHGENMTETVV 30
           +++KYQGS++VKRAQLQ+LR EFE L +KE ESV +YFART++I NKM + GE +TE  +
Sbjct: 1   MRRKYQGSNKVKRAQLQSLRREFEVLCMKESESVTEYFARTLAIANKMSAQGERLTEGNI 60

Query: 29  VEKILRSM 6
           VEKILRSM
Sbjct: 61  VEKILRSM 68


>gb|KZV47100.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Dorcoceras hygrometricum]
          Length = 553

 Score =  556 bits (1433), Expect = 0.0
 Identities = 278/461 (60%), Positives = 347/461 (75%), Gaps = 1/461 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK  E+G+V+K+KARLVAKGY QEYGVD+ EVFAPVAR +TIR+++A+AA   W ++QLD
Sbjct: 85   TKMKENGEVDKFKARLVAKGYKQEYGVDYKEVFAPVARHDTIRLVIALAAQYSWPIFQLD 144

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QP GY K G E KVY+LKKALYGLKQA RAWYS+IE+YF K G
Sbjct: 145  VKSAFLHGDLEEQVYIDQPPGYIKIGNEHKVYKLKKALYGLKQAPRAWYSRIETYFLKTG 204

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F KC +EHTLFTK  D   +LIV +YVD L +TG++  M  +FK+SM  EFDMSDLGKM 
Sbjct: 205  FKKCPYEHTLFTKFEDDGKMLIVCLYVDDLSFTGNDVSMFEDFKESMMVEFDMSDLGKMH 264

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLG+EV+Q+   IFI+Q KY+ E+L RF M        PV  G KL+R  + K +DST+
Sbjct: 265  YFLGIEVVQSTGGIFISQKKYIQELLCRFHMEKCNAANTPVELGLKLTRYCEGKKIDSTV 324

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            +KQ++GSLMYL+ATRPDI YSVSL+SR+ME PTE H +AAKRILRYL+GT  + + Y + 
Sbjct: 325  FKQIVGSLMYLTATRPDIMYSVSLISRYMENPTEVHLLAAKRILRYLQGTQKLSLYYKKG 384

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
             K+ L AFCDSDYAGD DDRKSTSGY +L  S AVSWSSKKQ IVTLSTTEAEFVAA  C
Sbjct: 385  EKADLIAFCDSDYAGDQDDRKSTSGYVFLLGSAAVSWSSKKQSIVTLSTTEAEFVAATSC 444

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQ IW+K+IL +L  +  G   + CDN+S IKLS+NPVLHGRSKHIDV++HFLR+L  +
Sbjct: 445  ACQAIWLKKILTDLKFKTHGPTVIYCDNNSAIKLSKNPVLHGRSKHIDVKYHFLRDLTRN 504

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSD 785
            G + L +C S++QVAD+ TK+LK  +F K R+ LGM +L +
Sbjct: 505  GTLDLIYCRSEDQVADMFTKSLKLPAFQKLRDCLGMCTLEN 545


>dbj|GAU29997.1| hypothetical protein TSUD_160820 [Trifolium subterraneum]
          Length = 1245

 Score =  578 bits (1490), Expect = 0.0
 Identities = 283/462 (61%), Positives = 357/462 (77%), Gaps = 1/462 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TKYNE G++EKYKARLVAKGYSQ+YG+D+ EVFAPVARW+TIR++L++AA + W VYQLD
Sbjct: 784  TKYNEKGEIEKYKARLVAKGYSQQYGIDYNEVFAPVARWDTIRMVLSLAAYQNWFVYQLD 843

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF            QP GY+K G   KVY+LKKALYGLKQA RAWYSKIESYFN+  
Sbjct: 844  VKSAFLHGELTENVYIAQPLGYQK-GSIDKVYKLKKALYGLKQAPRAWYSKIESYFNQEK 902

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYV-DLIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F KC HEHTLF K  + + ILIVS+YV DLIYTG++  +  +FK SM+ +F M+DLGKMR
Sbjct: 903  FQKCPHEHTLFIKHVE-DKILIVSLYVDDLIYTGNDSKLFEDFKHSMQGKFAMTDLGKMR 961

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLGVEV Q+   I I+Q KY  E+L RFGM A   V +P+ PG KL+++++ KLVD+T 
Sbjct: 962  YFLGVEVTQSEHGIMISQQKYAKEILARFGMEACNSVGSPIVPGNKLTKDENGKLVDATK 1021

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            YKQ++G LMYL ATRPD++YSV L++R+M+KPTE H  AAKRILRYL+G+  +G+LY R 
Sbjct: 1022 YKQMVGCLMYLLATRPDLAYSVCLIARYMDKPTEIHSAAAKRILRYLKGSISLGVLYKRG 1081

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
                L  + DSDYAGD DDRKSTSGY + F S A+SWSSKKQPIVTLSTTEAEFV AA C
Sbjct: 1082 KNQELVGWTDSDYAGDSDDRKSTSGYVFKFGSSAISWSSKKQPIVTLSTTEAEFVVAASC 1141

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQ IW+K+++ +LG +QE C  V CDNSS+IKLS+NPV+HGR KHIDVR++FLR+L  D
Sbjct: 1142 ACQAIWLKKVMNQLGQKQEKCTVVYCDNSSSIKLSKNPVMHGRCKHIDVRYYFLRDLVKD 1201

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSDI 782
            G++++  C++  Q+ADV+TKALK ++F K R  LGMI   D+
Sbjct: 1202 GILEMKHCSTIEQLADVMTKALKLETFCKFRQELGMIDAKDL 1243



 Score =  114 bits (286), Expect(2) = 7e-39
 Identities = 53/91 (58%), Positives = 73/91 (80%)
 Frame = -1

Query: 278 QAIERSILETILNANSVKDIWYSLKQKYQGSSRVKRAQLQALRYEFEALRIKEGESVQDY 99
           QAI+RSILETIL  ++ K+IW S++ KYQG ++VKRAQLQ LR +FE L +KE ESV DY
Sbjct: 74  QAIDRSILETILQRDTAKEIWDSMRSKYQGYTKVKRAQLQTLRKDFEVLAMKESESVDDY 133

Query: 98  FARTMSIVNKMKSHGENMTETVVVEKILRSM 6
           F RT++I N+M ++GE + + V+VEK+LRS+
Sbjct: 134 FVRTLAIANRMNAYGERLEQVVIVEKVLRSL 164



 Score = 77.4 bits (189), Expect(2) = 7e-39
 Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
 Frame = -2

Query: 448 ESGSYVQPAIPKFDGHYVHWAMLMENLLRSKEYWEVVENGVPVLEANTTPE-LKKTHDKL 272
           ES +++ PAIPKFDG Y HWAMLMENLLRSKE+W  +E+GV V   N T E LK T+D  
Sbjct: 3   ESSNFLPPAIPKFDGFYDHWAMLMENLLRSKEFWGAIEDGVTVAPPNATAEQLKITNDSK 62

Query: 271 SR 266
            R
Sbjct: 63  LR 64


>gb|KZV40714.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dorcoceras hygrometricum]
          Length = 536

 Score =  552 bits (1423), Expect = 0.0
 Identities = 277/463 (59%), Positives = 355/463 (76%), Gaps = 2/463 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE G+V+K+KARLV KGY+QEYGVD+ EVFAPVAR +T+R+ILAVAA+KGW VYQLD
Sbjct: 69   TKLNELGEVDKFKARLVVKGYTQEYGVDYSEVFAPVARMDTVRMILAVAAHKGWGVYQLD 128

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           EQP+GYE  G+++ VY+L KALYGLKQA RAW+S+IE+YF K G
Sbjct: 129  VKSAFLHGKLEEDIYVEQPQGYEVSGKKEMVYKLHKALYGLKQAPRAWFSRIEAYFIKEG 188

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F+   +E TLF K+   N  LIVS+YVD L++TG+N  ++ EFK SM+ EFDM+DLGKMR
Sbjct: 189  FSNSPNEQTLFIKRFGGN-FLIVSVYVDDLLFTGNNVRLLEEFKCSMKREFDMTDLGKMR 247

Query: 1627 FFLGVEVLQN-HRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDST 1451
            +FLG+EV+QN  + +FI Q KY  EV+ RFGM    PV NP+ PG K+ R++  + +DST
Sbjct: 248  YFLGIEVVQNPEKGVFICQRKYAAEVIDRFGMQHHNPVCNPIAPGQKIGRDEAGEKIDST 307

Query: 1450 MYKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSR 1271
            +YKQ++GSLMYL+A+RPD+ + V L+SRFM  PT+ H   AKR+LRYL+GT + GI Y  
Sbjct: 308  LYKQMVGSLMYLTASRPDLMFVVCLLSRFMASPTQLHLAVAKRVLRYLKGTLECGIWYKH 367

Query: 1270 EGKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAY 1091
               S L A+ DSDYAGD DD KSTSGYA++ S GAV+WSS+KQPIVTLSTTEAE+VAA  
Sbjct: 368  GTISDLVAYTDSDYAGDMDDSKSTSGYAFMMSGGAVAWSSRKQPIVTLSTTEAEYVAAVA 427

Query: 1090 CVCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCT 911
            C CQ IW++RIL+E+G EQ   + VLCDN+STIKLS+N ++HGRSKHI VR+HFLR+L  
Sbjct: 428  CACQAIWMRRILKEIGHEQAKEMVVLCDNTSTIKLSKNAIMHGRSKHIRVRYHFLRDLTK 487

Query: 910  DGVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSDI 782
             G+IKL  C ++ Q+AD++TK LK  SF K R  LGM+SLS++
Sbjct: 488  QGIIKLIHCNTEEQLADMMTKPLKLMSFQKARAALGMVSLSEL 530


>gb|KZV22085.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Dorcoceras hygrometricum]
          Length = 536

 Score =  551 bits (1421), Expect = 0.0
 Identities = 276/463 (59%), Positives = 355/463 (76%), Gaps = 2/463 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE G+V+K+KARLV KGY+QEYGVD+ EVFAPVAR +T+R+ILAVAA+KGW VYQLD
Sbjct: 69   TKLNELGEVDKFKARLVVKGYTQEYGVDYSEVFAPVARMDTVRMILAVAAHKGWGVYQLD 128

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           EQP+GYE  G+++ VY+L KALYGLKQA RAW+S+IE+YF K G
Sbjct: 129  VKSAFLHGKLEEDIYVEQPQGYEVSGKKEMVYKLHKALYGLKQAPRAWFSRIEAYFIKEG 188

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F+   +E TLF K+   N  LIVS+YVD L++TG+N  ++ EFK SM+ EFDM+DLGKMR
Sbjct: 189  FSNSPNEQTLFIKRFGGN-FLIVSVYVDDLLFTGNNVRLLEEFKCSMKREFDMTDLGKMR 247

Query: 1627 FFLGVEVLQN-HRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDST 1451
            +FLG+EV+QN  + +FI Q KY  E++ RFGM    PV NP+ PG K+ R++  + +DST
Sbjct: 248  YFLGIEVVQNPEKGVFICQRKYAAEMIDRFGMQHHNPVYNPIAPGQKIGRDEAGEKIDST 307

Query: 1450 MYKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSR 1271
            +YKQ++GSLMYL+A+RPD+ + V L+SRFM  PT+ H   AKR+LRYL+GT + GI Y  
Sbjct: 308  LYKQMVGSLMYLTASRPDLMFVVCLLSRFMASPTQLHLAVAKRVLRYLKGTLEYGIWYKH 367

Query: 1270 EGKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAY 1091
               S L A+ DSDYAGD DD KSTSGYA++ S GAV+WSS+KQPIVTLSTTEAE+VAA  
Sbjct: 368  GTMSDLVAYTDSDYAGDMDDSKSTSGYAFMMSGGAVAWSSRKQPIVTLSTTEAEYVAAVA 427

Query: 1090 CVCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCT 911
            C CQ IW++RIL+E+G EQ   + VLCDN+STIKLS+N ++HGRSKHI VR+HFLR+L  
Sbjct: 428  CACQAIWMRRILKEIGHEQAKEMVVLCDNTSTIKLSKNAIMHGRSKHIRVRYHFLRDLTK 487

Query: 910  DGVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSDI 782
             G+IKL  C ++ Q+AD++TK LK  SF K R  LGM+SLS++
Sbjct: 488  QGIIKLIHCNTEEQLADMMTKPLKLMSFQKARAALGMVSLSEL 530


>gb|PRQ55184.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 516

 Score =  551 bits (1419), Expect = 0.0
 Identities = 273/462 (59%), Positives = 344/462 (74%), Gaps = 1/462 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE G V+K+KARLVAKGY Q++GVD+ EVFAPVAR +TIR+++++AA   W +YQLD
Sbjct: 34   TKLNEKGAVDKHKARLVAKGYKQKFGVDYKEVFAPVARMDTIRLVISMAAQHSWPIYQLD 93

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QP GY K+G E+KVYRLKKALYGLKQA RAWYS+I++YF+ AG
Sbjct: 94   VKSAFLHGELQEQVYIDQPLGYVKKGSEEKVYRLKKALYGLKQAPRAWYSRIDTYFSNAG 153

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F +C +EHTL+ K G     L V +YVD LIYTG++D M ++FK SM  EF+M+DL ++ 
Sbjct: 154  FQRCPYEHTLYIKSGIAGKFLAVCLYVDDLIYTGNDDDMFTKFKNSMMAEFEMTDLERLH 213

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +FLG+EVLQ+   IFI Q KY  EVL++F M     V  P  PG KL+ + D K V ST 
Sbjct: 214  YFLGIEVLQSSAGIFITQRKYALEVLEKFEMKDCNAVAIPAEPGLKLTMDPDGKKVGSTF 273

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            +KQ++GSLMYL+ATRPDI  SVSL+SRFME+PTE H  AAKRILRY++GT D G+LY R 
Sbjct: 274  FKQIVGSLMYLTATRPDIMLSVSLISRFMERPTEQHLPAAKRILRYVKGTFDFGVLYKRG 333

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
             KS L  F DSDYAGD +DR+STS Y ++  SG VSW+SKKQPIVTLSTTEAEFVAA  C
Sbjct: 334  EKSELVGFTDSDYAGDVNDRRSTSAYVFMMGSGPVSWASKKQPIVTLSTTEAEFVAATAC 393

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
              Q IW++++LEEL  EQ+G  T+ CDN S IKLS+N V HGRSKHIDVR+HFLR+LC D
Sbjct: 394  ASQAIWLRKLLEELSYEQQGPTTIYCDNISAIKLSKNLVFHGRSKHIDVRYHFLRDLCKD 453

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSDI 782
            GVI +  C +++Q AD+LTK L++  FVK R  LG+ S  ++
Sbjct: 454  GVIDMVHCRTEDQFADLLTKPLRSAVFVKLRGLLGVCSRKEV 495


>gb|KYP69898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 522

 Score =  550 bits (1417), Expect = 0.0
 Identities = 265/462 (57%), Positives = 349/462 (75%), Gaps = 1/462 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK+ E G+++K+KARLVAKGY Q+YGVD+ EVFA VAR +TIR+ILA+ A   W+V+QLD
Sbjct: 60   TKFKEIGEIDKFKARLVAKGYVQQYGVDYTEVFALVARLDTIRLILAIVAQYSWNVFQLD 119

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKS F           +QP G+ K+G+E+KV +LKK LYGLKQA RAWY+KIE+YF + G
Sbjct: 120  VKSVFLHGELKEEIYVQQPNGFVKKGEEEKVNKLKKELYGLKQAPRAWYNKIEAYFVRNG 179

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F +C  EHTLFTK  +   ILI+S+YVD LIYTG++  M  EF+++M  EFDMSDLGKMR
Sbjct: 180  FDRCLCEHTLFTKSNEGGKILIISLYVDDLIYTGNDGSMCDEFRRAMMTEFDMSDLGKMR 239

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            +F GVEV+QN   IFI Q KY  EVL RFGM     V NP+ PGT+LS+ND    VD+T+
Sbjct: 240  YFHGVEVMQNSSGIFICQRKYAQEVLLRFGMENCNEVKNPIVPGTRLSKNDAGTKVDATL 299

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            +KQV+GSLMYL+ T+P + Y VSL+SRFM  P E+H+ AAKRILRYL+GT ++GI Y + 
Sbjct: 300  FKQVVGSLMYLTTTQPYLMYGVSLISRFMSSPIESHWFAAKRILRYLKGTTELGIYYKKG 359

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
              + + A+ ++D+AGD DDR+STSG+ +LF SGA+SWSSKKQP+VTLSTTEAE++  A C
Sbjct: 360  ENAKIVAYSNNDFAGDIDDRRSTSGFVFLFGSGAISWSSKKQPVVTLSTTEAEYITTASC 419

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQ IWI+R+LE+L +E++    +LCDN+S I+LS+NP+ HGRSKHID++FHFLR+L   
Sbjct: 420  ACQCIWIQRVLEKLSLEEQKNTLILCDNNSMIQLSKNPMFHGRSKHIDIKFHFLRDLVKK 479

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSFVKQRNNLGMISLSDI 782
            G I+L +C+SQ QV D++TK LK + F K R  LGM+   +I
Sbjct: 480  GTIELSYCSSQTQVVDIMTKPLKLEQFSKLRRMLGMLEAFEI 521


>emb|CAN72600.1| hypothetical protein VITISV_036712 [Vitis vinifera]
          Length = 1246

 Score =  573 bits (1478), Expect = 0.0
 Identities = 282/447 (63%), Positives = 350/447 (78%), Gaps = 1/447 (0%)
 Frame = -2

Query: 2164 TKYNEDGKVEKYKARLVAKGYSQEYGVDFPEVFAPVARWETIRIILAVAANKGWSVYQLD 1985
            TK NE G+V+KYKARLVAKGYSQ+ GVDF +++APVAR +T+R+I+A+ A +GW++YQLD
Sbjct: 800  TKLNELGEVDKYKARLVAKGYSQQQGVDFTKIYAPVARMDTVRMIVALTAQRGWTIYQLD 859

Query: 1984 VKSAFXXXXXXXXXXXEQPKGYEKRGQEQKVYRLKKALYGLKQALRAWYSKIESYFNKAG 1805
            VKSAF           +QPKGYEK+G E KVY+L KALYGLKQA RAW+S+IE+YF   G
Sbjct: 860  VKSAFLNGELNEDVYVDQPKGYEKKGSEHKVYKLHKALYGLKQAPRAWFSRIEAYFISEG 919

Query: 1804 FTKCSHEHTLFTKKGDKNHILIVSIYVD-LIYTGSNDYMISEFKKSMREEFDMSDLGKMR 1628
            F KC +E TLFTK+     ILIVSIY+D LIYT +++ MIS FK SM + FDM+DLG+MR
Sbjct: 920  FQKCPNEQTLFTKRSSAGKILIVSIYMDNLIYTSNDEDMISGFKNSMMKVFDMTDLGRMR 979

Query: 1627 FFLGVEVLQNHRFIFINQNKYVNEVLKRFGMAASKPVTNPVTPGTKLSRNDDSKLVDSTM 1448
            FFLG+EVLQ    IFI Q +Y  EVLKRFGM  SKPV++P+ PG K+SR+DD   V+ T 
Sbjct: 980  FFLGIEVLQKSNGIFICQMRYATEVLKRFGMFDSKPVSSPIVPGFKMSRDDDGVAVNMTN 1039

Query: 1447 YKQVIGSLMYLSATRPDISYSVSLVSRFMEKPTENHFIAAKRILRYLRGTADVGILYSRE 1268
            +KQ++GSLMYL+ATRPDI ++VSL+SR+M KPTE H    KRILRYL+GT + GILY + 
Sbjct: 1040 FKQMVGSLMYLTATRPDIMFNVSLISRYMAKPTELHLQVTKRILRYLKGTTNYGILYKKG 1099

Query: 1267 GKSSLEAFCDSDYAGDHDDRKSTSGYAYLFSSGAVSWSSKKQPIVTLSTTEAEFVAAAYC 1088
             +  L  F DSDYAGD DDRKSTSGY +L SSG +SW SKKQPIVTL TT+ EFVAA  C
Sbjct: 1100 REEELLVFTDSDYAGDIDDRKSTSGYVFLLSSGVISWLSKKQPIVTLLTTKVEFVAATAC 1159

Query: 1087 VCQGIWIKRILEELGMEQEGCLTVLCDNSSTIKLSRNPVLHGRSKHIDVRFHFLRNLCTD 908
             CQ IW+KR+L++L  EQ+GC T++CDNSSTIKLSRN V+HGRSKHIDVRFHFLR+L  D
Sbjct: 1160 ACQAIWMKRVLKKLSHEQKGCTTIMCDNSSTIKLSRNQVMHGRSKHIDVRFHFLRDLTKD 1219

Query: 907  GVIKLDFCTSQNQVADVLTKALKNDSF 827
            GV++L  C +Q QVAD++TK LK ++F
Sbjct: 1220 GVVELIHCGTQEQVADLMTKPLKLEAF 1246



 Score =  109 bits (273), Expect(2) = 3e-35
 Identities = 52/91 (57%), Positives = 70/91 (76%)
 Frame = -1

Query: 278 QAIERSILETILNANSVKDIWYSLKQKYQGSSRVKRAQLQALRYEFEALRIKEGESVQDY 99
           QAI+R+ILETIL  N+ K IW S+K+KY+ ++RVKR+ LQ LR +FE L +K GE + DY
Sbjct: 78  QAIDRTILETILQKNTSKQIWDSMKKKYEENARVKRSILQTLRRDFETLEMKSGECITDY 137

Query: 98  FARTMSIVNKMKSHGENMTETVVVEKILRSM 6
           F+R MS+ NKM+ HGE + E  +VEKILRS+
Sbjct: 138 FSRVMSVSNKMRFHGEQIREVTIVEKILRSL 168



 Score = 70.1 bits (170), Expect(2) = 3e-35
 Identities = 30/51 (58%), Positives = 36/51 (70%)
 Frame = -2

Query: 460 MAEKESGSYVQPAIPKFDGHYVHWAMLMENLLRSKEYWEVVENGVPVLEAN 308
           M+    G + QPAIP F+GHY HW+MLMEN LRSKEYW +VE G    +AN
Sbjct: 1   MSSTSEGQFAQPAIPCFNGHYDHWSMLMENFLRSKEYWSLVETGYDEPQAN 51