BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00012115
         (1047 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO23078.1| polyprotein [Glycine max]                              356   e-133
dbj|GAU43714.1| hypothetical protein TSUD_179970 [Trifolium subt...   353   e-130
gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   355   e-128
dbj|GAU11620.1| hypothetical protein TSUD_346120 [Trifolium subt...   349   e-127
gb|PNX96484.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   350   e-127
dbj|GAU44596.1| hypothetical protein TSUD_187860 [Trifolium subt...   348   e-126
dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subt...   348   e-126
gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   343   e-125
gb|PNY16560.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   330   e-124
gb|PNX94483.1| retrotransposon-related protein, partial [Trifoli...   341   e-124
gb|PNX73110.1| Ty3/gypsy retrotransposon protein, partial [Trifo...   339   e-124
gb|PNY16671.1| retrotransposon-related protein, partial [Trifoli...   342   e-123
dbj|GAU19157.1| hypothetical protein TSUD_79800 [Trifolium subte...   336   e-123
gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   338   e-123
dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subt...   335   e-122
dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subt...   334   e-121
dbj|GAU23504.1| hypothetical protein TSUD_39830 [Trifolium subte...   311   e-120
gb|PNX93203.1| hypothetical protein L195_g016354 [Trifolium prat...   309   e-120
gb|PNX92398.1| Ty3/gypsy retrotransposon protein [Trifolium prat...   317   e-117
gb|PNY14541.1| hypothetical protein L195_g011223 [Trifolium prat...   327   e-116

>gb|AAO23078.1| polyprotein [Glycine max]
          Length = 1552

 Score =  356 bits (913), Expect(3) = e-133
 Identities = 165/240 (68%), Positives = 205/240 (85%)
 Frame = +2

Query: 326  RQQISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSP 505
            R ++  +  L+++++   Q  DA  HY+V++ LLYWKDR+VIP +  ++  IL EYHSSP
Sbjct: 1024 RARLISDPHLKQLMETYKQGADAS-HYTVREGLLYWKDRVVIPAEEEIVNKILQEYHSSP 1082

Query: 506  IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 685
            IGGHAG+ RT+AR+ AQFYWP ++ DV+ ++QKC++CQQAKS NT PAGLLQPLPIP QV
Sbjct: 1083 IGGHAGITRTLARLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQV 1142

Query: 686  WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 865
            WED+AMDFITGLPNSFG +VIMVVIDRLTKYAHF+ ++ DY SK VAEAFM++IVKLHGI
Sbjct: 1143 WEDVAMDFITGLPNSFGLSVIMVVIDRLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGI 1202

Query: 866  PKSIVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            P+SIVS+RD+VFTS+F QHLFKLQGTTLAMS+ YHPQSDGQSE LNKCLEMYLRCFT+++
Sbjct: 1203 PRSIVSDRDRVFTSTFWQHLFKLQGTTLAMSSAYHPQSDGQSEVLNKCLEMYLRCFTYEH 1262



 Score = 94.0 bits (232), Expect(3) = e-133
 Identities = 44/66 (66%), Positives = 49/66 (74%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            LLG+KF+I+T              TPEQQAWLHKF+GYDFKIEYKP KDN AADALSRMF
Sbjct: 949  LLGNKFIIRTDQRSLKSLMDQSLQTPEQQAWLHKFLGYDFKIEYKPGKDNQAADALSRMF 1008

Query: 306  FMAWSE 323
             +AWSE
Sbjct: 1009 MLAWSE 1014



 Score = 78.2 bits (191), Expect(3) = e-133
 Identities = 36/45 (80%), Positives = 41/45 (91%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            VL QNGHPIAYFSKK+ P MQKQSAYTR+L AITEA++KFRHYL+
Sbjct: 906  VLGQNGHPIAYFSKKLAPRMQKQSAYTRELLAITEALSKFRHYLL 950


>dbj|GAU43714.1| hypothetical protein TSUD_179970 [Trifolium subterraneum]
          Length = 1291

 Score =  353 bits (906), Expect(3) = e-130
 Identities = 167/237 (70%), Positives = 202/237 (85%)
 Frame = +2

Query: 335  ISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSPIGG 514
            +  +++LQ+II GC    +  + YSVK+ LL WKD+LV+P  + +I+ IL E+H+S IGG
Sbjct: 849  VHQDAELQQIITGCQHKEEEYKLYSVKEGLLLWKDKLVVPNNTYIIKQILTEFHTSHIGG 908

Query: 515  HAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWED 694
            HAG+ RTIARI AQF+W  ++ D++++VQ CVVCQQAK  N+ PAGLLQPLPIP+QVW+D
Sbjct: 909  HAGITRTIARIQAQFFWKNMRQDIKEYVQHCVVCQQAKVSNSVPAGLLQPLPIPNQVWDD 968

Query: 695  MAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKS 874
            +AMDFITGLPNSFG  VIMVVIDRLTKY+HFVA +T+Y SKSVAEAFM +IVKLHGIPKS
Sbjct: 969  VAMDFITGLPNSFGYYVIMVVIDRLTKYSHFVAQKTEYTSKSVAEAFMCHIVKLHGIPKS 1028

Query: 875  IVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            IVS+RDKVFTSSF Q+LFKLQGT+LAMST YHPQ+DGQSEALNKCLEMYLRCFTF N
Sbjct: 1029 IVSDRDKVFTSSFWQNLFKLQGTSLAMSTAYHPQTDGQSEALNKCLEMYLRCFTFQN 1085



 Score = 93.6 bits (231), Expect(3) = e-130
 Identities = 43/66 (65%), Positives = 48/66 (72%)
 Frame = +3

Query: 126 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
           LLGHKFVIKT              TPEQQ WLHKF+G+DFKIEYKP KDN+ ADALSRM+
Sbjct: 771 LLGHKFVIKTDQKSLKSLLDQTLQTPEQQVWLHKFIGFDFKIEYKPGKDNIPADALSRMY 830

Query: 306 FMAWSE 323
            +AWSE
Sbjct: 831 LLAWSE 836



 Score = 71.6 bits (174), Expect(3) = e-130
 Identities = 34/45 (75%), Positives = 38/45 (84%)
 Frame = +1

Query: 1   VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
           VL Q GHPIAYFSKK+ P  QKQSAY R+L AITEA+AKFRHYL+
Sbjct: 728 VLGQKGHPIAYFSKKLSPRRQKQSAYIRELLAITEALAKFRHYLL 772


>gb|PNX98514.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1240

 Score =  355 bits (912), Expect(3) = e-128
 Identities = 168/240 (70%), Positives = 206/240 (85%)
 Frame = +2

Query: 326  RQQISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSP 505
            ++ I  + +L +IIQ C Q + A  +Y+V++ +LYWK R+VIP K++LIQ IL E+H+SP
Sbjct: 729  KEAIQQDDNLLEIIQKCLQGL-APTNYTVREGILYWKHRMVIPPKAALIQQILEEFHTSP 787

Query: 506  IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 685
            IGGHAG+ RT+ARI +QFYW  +K D+ D+VQ C+VCQQAK+ NT PAGLLQPLPIPSQV
Sbjct: 788  IGGHAGMTRTLARIKSQFYWSAMKKDIFDYVQNCLVCQQAKTTNTLPAGLLQPLPIPSQV 847

Query: 686  WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 865
            WED+AMDFITGLP SFG T IMVV+DRLTKYAHF+AM+TDY SKSVAEAFM N+VKLHG+
Sbjct: 848  WEDIAMDFITGLPLSFGYTTIMVVVDRLTKYAHFIAMKTDYTSKSVAEAFMHNVVKLHGM 907

Query: 866  PKSIVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            PKSIVS+RDKVFTS+F QHLFKLQGTTLAM++ YHPQSDGQ+E LNK LE+YLRCF+F+N
Sbjct: 908  PKSIVSDRDKVFTSTFWQHLFKLQGTTLAMTSAYHPQSDGQTEVLNKGLELYLRCFSFNN 967



 Score = 86.3 bits (212), Expect(3) = e-128
 Identities = 39/66 (59%), Positives = 47/66 (71%)
 Frame = +3

Query: 126 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
           LLGH+F+I+T              TPEQQ WLHKF+GYDF IEYKP K+N+AADALSR+ 
Sbjct: 654 LLGHRFIIRTDQKSLRSLMDQSLQTPEQQEWLHKFLGYDFVIEYKPGKENLAADALSRLM 713

Query: 306 FMAWSE 323
            +AWSE
Sbjct: 714 TLAWSE 719



 Score = 67.4 bits (163), Expect(3) = e-128
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = +1

Query: 1   VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
           VL Q+ HPIAYFSKK+VP  QK+SAY R++ AI EAIAKFRHYL+
Sbjct: 611 VLHQDNHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLL 655


>dbj|GAU11620.1| hypothetical protein TSUD_346120 [Trifolium subterraneum]
          Length = 1479

 Score =  349 bits (895), Expect(3) = e-127
 Identities = 163/237 (68%), Positives = 196/237 (82%)
 Frame = +2

Query: 335  ISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSPIGG 514
            +  ++ L +IIQ C Q      HY+V+  LLYWK R+VIP   +L+Q +L E+HSSPIGG
Sbjct: 1003 LQQDTTLMEIIQQCEQG-QTNTHYTVRDGLLYWKHRIVIPVDDALLQQVLKEFHSSPIGG 1061

Query: 515  HAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWED 694
            HAG+ RT+ARI AQFYWP +K D+  +VQ C+VCQQ K+ NT PAGLLQPLPIPSQ+WED
Sbjct: 1062 HAGMTRTLARIQAQFYWPNMKQDIVQYVQNCLVCQQTKTTNTLPAGLLQPLPIPSQIWED 1121

Query: 695  MAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKS 874
            +AMDFITGLP+S G TVI+VV+DRLTKYAHF+ M+TDY SKSVAE FM N+VKLHG+PKS
Sbjct: 1122 LAMDFITGLPSSHGYTVILVVVDRLTKYAHFIPMKTDYSSKSVAEVFMQNVVKLHGLPKS 1181

Query: 875  IVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            IVS+RDKVFTS+F Q LFKLQGTTLAMS+ YHPQSDGQSE LNK LE+YLRCF+F+N
Sbjct: 1182 IVSDRDKVFTSAFWQQLFKLQGTTLAMSSAYHPQSDGQSEVLNKTLELYLRCFSFNN 1238



 Score = 89.0 bits (219), Expect(3) = e-127
 Identities = 41/66 (62%), Positives = 46/66 (69%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            LLGHKF+I+T              TP+QQ WLHKF+GYDF IEYKP KDN+AADALSRM 
Sbjct: 925  LLGHKFIIRTDQKSLRSLMEQSLQTPDQQEWLHKFLGYDFTIEYKPGKDNLAADALSRMM 984

Query: 306  FMAWSE 323
             M WSE
Sbjct: 985  CMGWSE 990



 Score = 69.3 bits (168), Expect(3) = e-127
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            VL QN HPIAYFSKK+VP  QK+SAY R++ AI EAIAKFRHYL+
Sbjct: 882  VLHQNNHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLL 926


>gb|PNX96484.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1258

 Score =  350 bits (899), Expect(3) = e-127
 Identities = 166/240 (69%), Positives = 197/240 (82%)
 Frame = +2

Query: 326  RQQISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSP 505
            R  +  +S L  I+Q C QN     HY+VK  LL+WK R+VIP+ S LI+ +L E H+SP
Sbjct: 728  RAALKQDSTLLGIMQKCVQNNATNSHYTVKDELLFWKHRIVIPKNSELIKQVLYELHTSP 787

Query: 506  IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 685
            IGGHAG+ART+AR+ +QFYWP +K D+ D+VQ C +CQ+AK+ NT PAGLLQPLPIPSQV
Sbjct: 788  IGGHAGMARTLARVKSQFYWPDMKTDIADYVQNCAICQKAKTTNTLPAGLLQPLPIPSQV 847

Query: 686  WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 865
            WED+AMDFITGLP+S G T I+VVIDRLTKYAHF+ ++TDY SK VAEA M NIVKLHG+
Sbjct: 848  WEDVAMDFITGLPSSQGYTTILVVIDRLTKYAHFIPLKTDYSSKIVAEAVMDNIVKLHGM 907

Query: 866  PKSIVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            PKSIVS+RDKVFTSSF Q LFKLQGTTLAMS+ YHPQSDGQSE LNK LE++LRCFTFDN
Sbjct: 908  PKSIVSDRDKVFTSSFWQQLFKLQGTTLAMSSAYHPQSDGQSEVLNKTLELFLRCFTFDN 967



 Score = 87.8 bits (216), Expect(3) = e-127
 Identities = 40/66 (60%), Positives = 47/66 (71%)
 Frame = +3

Query: 126 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
           LLGHKF+I+T              TP+QQ WLH+F+GYDF IEYKP K+NVAADALSR+ 
Sbjct: 653 LLGHKFIIRTDQKSLRNLMEQALQTPDQQEWLHRFLGYDFSIEYKPGKENVAADALSRVM 712

Query: 306 FMAWSE 323
            MAWSE
Sbjct: 713 TMAWSE 718



 Score = 68.2 bits (165), Expect(3) = e-127
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = +1

Query: 1   VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
           VL Q GHPIAYFSKK+VP  Q++SAY R++ AI EAIAKFRHYL+
Sbjct: 610 VLHQEGHPIAYFSKKLVPRNQRKSAYFREMLAIAEAIAKFRHYLL 654


>dbj|GAU44596.1| hypothetical protein TSUD_187860 [Trifolium subterraneum]
          Length = 1267

 Score =  348 bits (894), Expect(3) = e-126
 Identities = 164/237 (69%), Positives = 204/237 (86%)
 Frame = +2

Query: 335  ISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSPIGG 514
            + ++S ++ I+Q  A    A Q YS+K+ LLYWK RLV+P  + L+  +L E+H+SPIGG
Sbjct: 773  LQNDSHMKDIMQKSALGKAAIQ-YSIKEGLLYWKQRLVVPRDNDLLHKLLFEFHTSPIGG 831

Query: 515  HAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWED 694
            H+G+ RTIARI +QFYWP +KND+ ++VQKCVVCQQAK+ NT+PAGLLQPLPIPSQVWED
Sbjct: 832  HSGITRTIARIKSQFYWPDMKNDIVEYVQKCVVCQQAKTTNTSPAGLLQPLPIPSQVWED 891

Query: 695  MAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKS 874
            +AMDFITGLP+S+G T IMVV+DRLT+YAHF+AM++DY SK+VAEAFM NIVKLHG+PKS
Sbjct: 892  IAMDFITGLPSSYGYTTIMVVVDRLTQYAHFIAMKSDYTSKTVAEAFMHNIVKLHGMPKS 951

Query: 875  IVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            IVS+RDKVFTS+F QHLFKLQGT+LAMS+ YHPQSDGQ+E LNK LE++LRCFTF N
Sbjct: 952  IVSDRDKVFTSTFWQHLFKLQGTSLAMSSAYHPQSDGQTEVLNKALELFLRCFTFHN 1008



 Score = 87.0 bits (214), Expect(3) = e-126
 Identities = 39/66 (59%), Positives = 47/66 (71%)
 Frame = +3

Query: 126 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
           LLGHKF+I+T              TPEQQ WLHKF+GYDF IEYKP K+N+AADALSR+ 
Sbjct: 695 LLGHKFIIRTDQKSLRSLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENIAADALSRVM 754

Query: 306 FMAWSE 323
            ++WSE
Sbjct: 755 TLSWSE 760



 Score = 69.3 bits (168), Expect(3) = e-126
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +1

Query: 1   VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
           VL Q GHPIAYFSKK+VP  QK+SAY R++ AI EAIAKFRHYL+
Sbjct: 652 VLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLL 696


>dbj|GAU27453.1| hypothetical protein TSUD_161390 [Trifolium subterraneum]
          Length = 1531

 Score =  348 bits (894), Expect(3) = e-126
 Identities = 164/240 (68%), Positives = 201/240 (83%)
 Frame = +2

Query: 326  RQQISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSP 505
            R  +  +S L +I++ CAQN D+  +Y++K +LL+WK R+VIP+ S L Q +L E H+SP
Sbjct: 1001 RVALKQDSTLLEIMEKCAQNSDSNSNYTIKDDLLFWKHRIVIPKHSELRQQVLYELHTSP 1060

Query: 506  IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 685
            IGGHAG+ART+AR+ AQFYW  +K D+  +VQ CV+CQ+AK+ NT PAGLLQPLPIPSQV
Sbjct: 1061 IGGHAGIARTLARVKAQFYWLDMKTDIAKYVQNCVICQKAKTTNTPPAGLLQPLPIPSQV 1120

Query: 686  WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 865
            WED+AMDFITGLP+S G T I+VVIDRLTKYAHF+ ++TDY SK VAEAFM NIVKLHG+
Sbjct: 1121 WEDVAMDFITGLPSSHGYTTILVVIDRLTKYAHFIPLKTDYSSKIVAEAFMDNIVKLHGM 1180

Query: 866  PKSIVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            PKSIVS+RDKVFTSSF Q LFKLQGT+LAMS+ YHPQSDGQSE LNK LE++LRCFTF+N
Sbjct: 1181 PKSIVSDRDKVFTSSFWQQLFKLQGTSLAMSSAYHPQSDGQSEVLNKTLELFLRCFTFEN 1240



 Score = 86.3 bits (212), Expect(3) = e-126
 Identities = 39/66 (59%), Positives = 47/66 (71%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            LLGHKF+I+T              TP+QQ WLH+F+GYDF IEYKP K+NVAADALSR+ 
Sbjct: 926  LLGHKFIIRTDQKSLRNLMEQALQTPDQQEWLHRFLGYDFTIEYKPGKENVAADALSRVM 985

Query: 306  FMAWSE 323
             +AWSE
Sbjct: 986  TLAWSE 991



 Score = 68.2 bits (165), Expect(3) = e-126
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            VL Q GHPIAYFSKK+VP  Q++SAY R++ AI EAIAKFRHYL+
Sbjct: 883  VLHQEGHPIAYFSKKLVPRNQRKSAYFREMLAIAEAIAKFRHYLL 927


>gb|PNX92431.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 1502

 Score =  343 bits (881), Expect(3) = e-125
 Identities = 162/240 (67%), Positives = 202/240 (84%)
 Frame = +2

Query: 326  RQQISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSP 505
            R+ + +++ L++++Q  A    A   YS+++ LLYWK RLVIP+   L+Q +L E+H+SP
Sbjct: 1004 RRALENDNQLREVMQNYAIG-KAPVQYSMREGLLYWKQRLVIPKNDDLLQKLLFEFHTSP 1062

Query: 506  IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 685
            IGGHAG+ RTIARI AQFYWP +K D+ ++V KCVVCQQAK+ NT+PAGLLQPLPIPSQV
Sbjct: 1063 IGGHAGITRTIARIKAQFYWPDMKKDIAEYVHKCVVCQQAKTTNTSPAGLLQPLPIPSQV 1122

Query: 686  WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 865
            WED+AMDFITGLP S+G T IMVV+DRLTK AHF+ M+TDY SK+VAEAFM NIVKLHG+
Sbjct: 1123 WEDIAMDFITGLPLSYGYTTIMVVVDRLTKSAHFIPMKTDYTSKTVAEAFMHNIVKLHGM 1182

Query: 866  PKSIVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            PKSIVS+RDKVFTS+F QHLFK+QGT+LAMS+ YHPQ+DGQ+E LNK LE++LRCFTF N
Sbjct: 1183 PKSIVSDRDKVFTSAFWQHLFKMQGTSLAMSSAYHPQTDGQTEVLNKTLELFLRCFTFHN 1242



 Score = 89.0 bits (219), Expect(3) = e-125
 Identities = 41/66 (62%), Positives = 47/66 (71%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            LLGHKF+I+T              TPEQQ WLHKF+GYDF IEYKP K+N+AADALSR+ 
Sbjct: 929  LLGHKFIIRTDQKSLRNLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENMAADALSRVM 988

Query: 306  FMAWSE 323
             MAWSE
Sbjct: 989  VMAWSE 994



 Score = 69.3 bits (168), Expect(3) = e-125
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            VL Q GHPIAYFSKK+VP  QK+SAY R++ AI EAIAKFRHYL+
Sbjct: 886  VLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLL 930


>gb|PNY16560.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1525

 Score =  330 bits (845), Expect(3) = e-124
 Identities = 157/240 (65%), Positives = 191/240 (79%)
 Frame = +2

Query: 326  RQQISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSP 505
            +Q  +   ++Q+I     +N     H ++K +L++WK RL++P+ S +   IL E+H+S 
Sbjct: 1001 KQACNQEEEIQQIKLKWNENRGYNPHVTIKDDLVFWKGRLMVPQVSHIRDQILQEFHNSA 1060

Query: 506  IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 685
            IGGHAG+ART+ARITAQFYW  +KND+  FVQ+CVVCQQAK     PAGLLQPLPIP QV
Sbjct: 1061 IGGHAGIARTMARITAQFYWKNMKNDITHFVQQCVVCQQAKHETRNPAGLLQPLPIPDQV 1120

Query: 686  WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 865
            WED+AMDFITGLPNS+G TVIMVVIDRL+KY+HF  ++TDY SK VAE FM NIVKLHG+
Sbjct: 1121 WEDVAMDFITGLPNSYGFTVIMVVIDRLSKYSHFSPLKTDYSSKIVAEVFMRNIVKLHGV 1180

Query: 866  PKSIVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            PKSIVS+RDKVF S F + LF+LQGTTLAM++ YHPQSDGQSEALNKCLEMYLRC TF N
Sbjct: 1181 PKSIVSDRDKVFMSKFWKELFQLQGTTLAMTSAYHPQSDGQSEALNKCLEMYLRCLTFQN 1240



 Score = 89.7 bits (221), Expect(3) = e-124
 Identities = 40/66 (60%), Positives = 48/66 (72%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            LLGHKF+IKT              TPEQQAWLHKF+GYDF +EYKP K+N+AADALSR+ 
Sbjct: 926  LLGHKFIIKTDQKSLKSLMDQSLQTPEQQAWLHKFLGYDFTVEYKPGKENLAADALSRVM 985

Query: 306  FMAWSE 323
             +AWS+
Sbjct: 986  LLAWSQ 991



 Score = 78.6 bits (192), Expect(3) = e-124
 Identities = 37/45 (82%), Positives = 42/45 (93%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            VLSQNGHPIA+FS+K+ P MQKQSAYTR+ FAITEAIAKFRHYL+
Sbjct: 883  VLSQNGHPIAFFSRKLGPRMQKQSAYTREFFAITEAIAKFRHYLL 927


>gb|PNX94483.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1287

 Score =  341 bits (875), Expect(3) = e-124
 Identities = 158/228 (69%), Positives = 196/228 (85%)
 Frame = +2

Query: 362  IIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSPIGGHAGVARTIA 541
            II+ C    ++   Y+++  +LYWK+R+VIP+KS+LIQ +L+E+HSSPIGGHAG  RT+A
Sbjct: 1014 IIEKCISQGNSYLQYTLRDGVLYWKNRVVIPQKSALIQQVLHEFHSSPIGGHAGFTRTLA 1073

Query: 542  RITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAMDFITGL 721
            RI +QFYW  +K DV +++Q CV+CQQAK+ NT PAGLLQPLPIP+QVWED+AMDFITGL
Sbjct: 1074 RIKSQFYWVAMKKDVLEYIQNCVICQQAKTTNTLPAGLLQPLPIPTQVWEDIAMDFITGL 1133

Query: 722  PNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVSNRDKVF 901
            P S+G T I+VV+DRLTKYAHF+ M+TDY SKSVAE FM +IVKLHG+PKSIVS+RDKVF
Sbjct: 1134 PLSYGYTTILVVVDRLTKYAHFLPMKTDYSSKSVAEVFMNHIVKLHGMPKSIVSDRDKVF 1193

Query: 902  TSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            TSSF QHLFKLQGT+LAMS+ YHPQSDGQ+E LNK LE++LRCFTF+N
Sbjct: 1194 TSSFWQHLFKLQGTSLAMSSAYHPQSDGQTEVLNKGLELFLRCFTFNN 1241



 Score = 85.9 bits (211), Expect(3) = e-124
 Identities = 39/66 (59%), Positives = 47/66 (71%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            LLGH+F+I+T              TPEQQ WLHKF+GYDF IEYKP K+N+AADALSR+ 
Sbjct: 927  LLGHRFIIRTDQKSLRSLMDQSLQTPEQQQWLHKFLGYDFVIEYKPGKENLAADALSRVM 986

Query: 306  FMAWSE 323
             +AWSE
Sbjct: 987  TLAWSE 992



 Score = 70.1 bits (170), Expect(3) = e-124
 Identities = 33/45 (73%), Positives = 40/45 (88%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            VL Q+GHPIAYFSKK+VP  QK+SAY R++ AI+EAIAKFRHYL+
Sbjct: 884  VLHQDGHPIAYFSKKLVPRNQKKSAYFREMLAISEAIAKFRHYLL 928


>gb|PNX73110.1| Ty3/gypsy retrotransposon protein, partial [Trifolium pratense]
          Length = 937

 Score =  339 bits (870), Expect(3) = e-124
 Identities = 159/237 (67%), Positives = 200/237 (84%)
 Frame = +2

Query: 335  ISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSPIGG 514
            + +++ + +I+  CA    A   Y++++ LLYWK RLVIP+++ L+  +L E+H+SPIGG
Sbjct: 464  LQNDNQMMEIMLKCASG-KAPIQYTMREGLLYWKQRLVIPKQNELLHKVLYEFHTSPIGG 522

Query: 515  HAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWED 694
            HAG+ RT+ARI +QFYWP +K D+ ++VQ CVVCQQAK+ NT+PAGLLQPLPIPSQVWED
Sbjct: 523  HAGITRTMARIKSQFYWPDMKKDILEYVQNCVVCQQAKTTNTSPAGLLQPLPIPSQVWED 582

Query: 695  MAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKS 874
            +AMDFITGLP S+G T IMVV+DRLTKYAHF+ MRTDY S+SVAEAFM NIVKLHG+PKS
Sbjct: 583  IAMDFITGLPLSYGYTTIMVVVDRLTKYAHFIPMRTDYTSRSVAEAFMHNIVKLHGMPKS 642

Query: 875  IVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            IVS+RDKVFTS+F Q LFKLQGT+LAMS+ YHPQSDGQ+E LNK LE++LRCF+F N
Sbjct: 643  IVSDRDKVFTSAFWQQLFKLQGTSLAMSSAYHPQSDGQTEVLNKGLELFLRCFSFHN 699



 Score = 87.8 bits (216), Expect(3) = e-124
 Identities = 40/66 (60%), Positives = 47/66 (71%)
 Frame = +3

Query: 126 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
           LLGHKF+I+T              TPEQQ WLHKF+GYDF IEYKP K+N+AADALSR+ 
Sbjct: 386 LLGHKFIIRTDQKSLRSLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKENMAADALSRLM 445

Query: 306 FMAWSE 323
            +AWSE
Sbjct: 446 TLAWSE 451



 Score = 69.3 bits (168), Expect(3) = e-124
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +1

Query: 1   VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
           VL Q GHPIAYFSKK+VP  QK+SAY R++ AI EAIAKFRHYL+
Sbjct: 343 VLHQEGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLL 387


>gb|PNY16671.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1284

 Score =  342 bits (876), Expect(3) = e-123
 Identities = 163/247 (65%), Positives = 200/247 (80%)
 Frame = +2

Query: 305  FHGLV*ARQQISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNIL 484
            +H +   +  +  + D+  II+ C     A   YS++  LLYWK RL+IP+ S L+  IL
Sbjct: 982  YHFIEQLKVALQSDHDMSNIIRKCKSG-KAPIQYSIRDGLLYWKQRLMIPKDSDLLNKIL 1040

Query: 485  NEYHSSPIGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQP 664
             E+H+SPIGGHAG+ RTIARI +QFYW  +K D+ ++VQKCVVCQQAK+ NT+PAGLLQP
Sbjct: 1041 FEFHTSPIGGHAGITRTIARIKSQFYWQDMKQDITEYVQKCVVCQQAKTTNTSPAGLLQP 1100

Query: 665  LPIPSQVWEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTN 844
            LPIP+QVWED+AMDFITGLP S G T IMV++DRLTKYAHF+ M++DY SKSVAEAFM N
Sbjct: 1101 LPIPAQVWEDIAMDFITGLPPSSGYTTIMVIVDRLTKYAHFIPMKSDYSSKSVAEAFMHN 1160

Query: 845  IVKLHGIPKSIVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYL 1024
            IVKLHG+PKSIVS+RDKVFTSSF Q LFKLQGT+LAMS+ YHPQSDGQ+E LNK LE++L
Sbjct: 1161 IVKLHGMPKSIVSDRDKVFTSSFWQQLFKLQGTSLAMSSAYHPQSDGQTEVLNKVLELFL 1220

Query: 1025 RCFTFDN 1045
            RCFTF+N
Sbjct: 1221 RCFTFNN 1227



 Score = 85.1 bits (209), Expect(3) = e-123
 Identities = 37/66 (56%), Positives = 47/66 (71%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            L+GHKF+I+T              TPEQQ WLH+F+GYDF IEYKP K+N+AADALSR+ 
Sbjct: 914  LMGHKFIIRTDQKSLRSLMEQSLQTPEQQEWLHRFLGYDFTIEYKPGKENIAADALSRVM 973

Query: 306  FMAWSE 323
             ++WSE
Sbjct: 974  TLSWSE 979



 Score = 68.6 bits (166), Expect(3) = e-123
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            VL Q GHPIAYFSKK+VP  QK+SAY R++ AI E+IAKFRHYL+
Sbjct: 871  VLQQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAESIAKFRHYLM 915


>dbj|GAU19157.1| hypothetical protein TSUD_79800 [Trifolium subterraneum]
          Length = 1500

 Score =  336 bits (861), Expect(3) = e-123
 Identities = 155/218 (71%), Positives = 188/218 (86%)
 Frame = +2

Query: 392  AEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSPIGGHAGVARTIARITAQFYWPG 571
            A   YS K+ LLYWK RLVIP  S+L+  +L E+H+SPIGGH+ + RT+ARI +QFYWP 
Sbjct: 987  APVQYSTKEGLLYWKQRLVIPRDSNLLHKVLFEFHTSPIGGHSSITRTLARIKSQFYWPD 1046

Query: 572  LKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAMDFITGLPNSFGSTVIM 751
            +K D+ ++VQKC+VCQQAK+ NT+PAGLLQPLPIPSQVWED+AMDFITGLP+SFG   IM
Sbjct: 1047 MKKDIIEYVQKCIVCQQAKTTNTSPAGLLQPLPIPSQVWEDIAMDFITGLPSSFGYNTIM 1106

Query: 752  VVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVSNRDKVFTSSF*QHLFK 931
            VV+DRLTKYA F+ M++DY SKSVAE FM NIVKLHG+PKSIVS+RD+VFTS+F QHLFK
Sbjct: 1107 VVVDRLTKYADFIPMKSDYTSKSVAETFMHNIVKLHGMPKSIVSDRDRVFTSTFWQHLFK 1166

Query: 932  LQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            LQGT+LAMS+ YHPQSDGQ+E LNK LE++LRCFTF+N
Sbjct: 1167 LQGTSLAMSSAYHPQSDGQTEVLNKALELFLRCFTFNN 1204



 Score = 87.8 bits (216), Expect(3) = e-123
 Identities = 40/66 (60%), Positives = 47/66 (71%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            LLGHKF+I+T              TPEQQ WLHKF+GYDF IEYKP KDN+AADALSR+ 
Sbjct: 891  LLGHKFIIRTDQKSLRSLMEQSLQTPEQQEWLHKFLGYDFTIEYKPGKDNMAADALSRIM 950

Query: 306  FMAWSE 323
             ++WSE
Sbjct: 951  TLSWSE 956



 Score = 69.3 bits (168), Expect(3) = e-123
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +1

Query: 1   VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
           VL Q GHPIAYFSKK+VP  QK+SAY R++ AI EAIAKFRHYL+
Sbjct: 848 VLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLL 892


>gb|PNY17453.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1535

 Score =  338 bits (867), Expect(3) = e-123
 Identities = 160/240 (66%), Positives = 199/240 (82%)
 Frame = +2

Query: 326  RQQISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSP 505
            R  + +++ +++I+  C     A   YS++  LLYWK RLVIP+ + L+  +L E+H+SP
Sbjct: 1001 RVALQNDNQMREILMKCNAG-KAPVQYSMRDGLLYWKQRLVIPKDNDLLYKVLFEFHTSP 1059

Query: 506  IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 685
            IGGHAG+ RT+ARI +QFYWP +K D+ D+VQKC+VCQQAK+ NT+PAGLLQPLPIPSQV
Sbjct: 1060 IGGHAGITRTMARIKSQFYWPDMKQDIIDYVQKCMVCQQAKTTNTSPAGLLQPLPIPSQV 1119

Query: 686  WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 865
            WED+AMDFITGLP S G T IMVV+DRLTKYAHF+ M++DY SKSVAE+FM NIVKLHG+
Sbjct: 1120 WEDIAMDFITGLPLSSGYTTIMVVVDRLTKYAHFIPMKSDYTSKSVAESFMHNIVKLHGM 1179

Query: 866  PKSIVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            PKSIVS+RDKVFTS+F Q LFKLQGT+LAMS+ YHPQSDGQ+E LNK LE++LRCFTF N
Sbjct: 1180 PKSIVSDRDKVFTSAFWQQLFKLQGTSLAMSSAYHPQSDGQTEVLNKALELFLRCFTFHN 1239



 Score = 85.1 bits (209), Expect(3) = e-123
 Identities = 38/66 (57%), Positives = 47/66 (71%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            LLGHKF+I+T              TP+QQ WLHKF+GYDF IEYKP K+N+AADALSR+ 
Sbjct: 926  LLGHKFIIRTDQKSLRSLMEQSLQTPDQQEWLHKFLGYDFTIEYKPGKENMAADALSRIM 985

Query: 306  FMAWSE 323
             ++WSE
Sbjct: 986  TLSWSE 991



 Score = 69.3 bits (168), Expect(3) = e-123
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            VL Q GHPIAYFSKK+VP  QK+SAY R++ AI EAIAKFRHYL+
Sbjct: 883  VLHQQGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLL 927


>dbj|GAU25204.1| hypothetical protein TSUD_151040 [Trifolium subterraneum]
          Length = 1512

 Score =  335 bits (859), Expect(3) = e-122
 Identities = 157/231 (67%), Positives = 192/231 (83%)
 Frame = +2

Query: 353  LQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSPIGGHAGVAR 532
            L KI   CAQ+     HY++K +LL+WK R+VIP   +LIQ +L E H+SP+GGHAG+ R
Sbjct: 1009 LVKIRMECAQHSQPGSHYTIKDDLLFWKQRIVIPHDGALIQQVLYELHTSPLGGHAGITR 1068

Query: 533  TIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAMDFI 712
            T+AR+ AQFYW  +K D+ ++VQ C +CQ+AK+ NT PAGLLQPLPIPSQVWED+AMDFI
Sbjct: 1069 TVARVKAQFYWSDMKKDIVEYVQNCEICQKAKTANTLPAGLLQPLPIPSQVWEDVAMDFI 1128

Query: 713  TGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVSNRD 892
            TGLP S G TVI+VVIDRLTKYAHF+ ++TDY SK VAEAFM +IVKLHG+PKSIVS+RD
Sbjct: 1129 TGLPLSHGYTVILVVIDRLTKYAHFIPLKTDYTSKIVAEAFMHHIVKLHGMPKSIVSDRD 1188

Query: 893  KVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            KVFTS+F Q LFKLQGT+LAMS+ YHPQSDGQSE LN+ LE++LRCFTF+N
Sbjct: 1189 KVFTSNFWQQLFKLQGTSLAMSSAYHPQSDGQSEVLNRTLELFLRCFTFNN 1239



 Score = 87.4 bits (215), Expect(3) = e-122
 Identities = 41/71 (57%), Positives = 48/71 (67%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            LLGHKF+I+T              TP+QQ WLH+F+GYDF IEYKP KDNV ADALSR+ 
Sbjct: 925  LLGHKFIIRTDQKSLRNLMEQTLQTPDQQEWLHRFLGYDFSIEYKPGKDNVVADALSRVM 984

Query: 306  FMAWSERGNRL 338
             +AWSE   RL
Sbjct: 985  TLAWSEPQFRL 995



 Score = 69.3 bits (168), Expect(3) = e-122
 Identities = 33/45 (73%), Positives = 38/45 (84%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            VL Q GHPIAYFSKK+VP  QK+SAY R++ AI EAIAKFRHYL+
Sbjct: 882  VLHQEGHPIAYFSKKLVPRNQKKSAYFREMLAIAEAIAKFRHYLL 926


>dbj|GAU29525.1| hypothetical protein TSUD_115470 [Trifolium subterraneum]
          Length = 1556

 Score =  334 bits (856), Expect(3) = e-121
 Identities = 158/240 (65%), Positives = 195/240 (81%)
 Frame = +2

Query: 326  RQQISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSP 505
            R +I  ++ L++IIQ C  N  A+ +Y+VK NLL+W+ RLVIPE S+LIQ IL E+HSSP
Sbjct: 1017 RLEIQQDTHLKEIIQQCLNNSCADANYTVKDNLLFWQQRLVIPENSTLIQKILLEFHSSP 1076

Query: 506  IGGHAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQV 685
            IGGH+G+ RT+ARI +QFYW  ++  +  F++ CV+CQQAK+  T PAGLL PLPIP+ V
Sbjct: 1077 IGGHSGITRTMARIASQFYWTHMRQHIVAFIKHCVICQQAKTTTTTPAGLLAPLPIPTLV 1136

Query: 686  WEDMAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGI 865
            W D+AMDFITGLP S G TVI+VVIDRLTKYAHF  +++D+ SK VAE FM NIVKLHG+
Sbjct: 1137 WADIAMDFITGLPPSNGFTVILVVIDRLTKYAHFFPLKSDFDSKKVAEIFMQNIVKLHGM 1196

Query: 866  PKSIVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            P SIVS+RDKVFTS+F +HLFKL GTTLAM++ YHPQSDGQSE LNKC+EMYLRC TFDN
Sbjct: 1197 PSSIVSDRDKVFTSAFWRHLFKLHGTTLAMTSAYHPQSDGQSEVLNKCVEMYLRCMTFDN 1256



 Score = 85.5 bits (210), Expect(3) = e-121
 Identities = 39/66 (59%), Positives = 47/66 (71%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            LLGHKF+I+T              TPEQQAWLHKF+G+DF IEYKP K+N+A DALSR+ 
Sbjct: 942  LLGHKFIIRTDQKSLKALLEQTLQTPEQQAWLHKFIGFDFTIEYKPGKENLAVDALSRIN 1001

Query: 306  FMAWSE 323
             +AWSE
Sbjct: 1002 LLAWSE 1007



 Score = 68.6 bits (166), Expect(3) = e-121
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            +LSQ GHPIA+FSKK+ P  QKQSAY R+  AITEA+AKFRHYL+
Sbjct: 899  ILSQEGHPIAFFSKKLGPTAQKQSAYVREFRAITEALAKFRHYLL 943


>dbj|GAU23504.1| hypothetical protein TSUD_39830 [Trifolium subterraneum]
          Length = 1160

 Score =  311 bits (798), Expect(3) = e-120
 Identities = 148/215 (68%), Positives = 176/215 (81%)
 Frame = +2

Query: 395  EQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSPIGGHAGVARTIARITAQFYWPGL 574
            +  Y     L+++ +R+++P    L + IL E+HSSPIGGHAG+ RT+ARI+AQFYW  +
Sbjct: 731  DPRYVHHDGLIFFNNRIMVPTHQELKEKILFEFHSSPIGGHAGITRTLARISAQFYWVNM 790

Query: 575  KNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAMDFITGLPNSFGSTVIMV 754
            K D++ FVQ CV+CQQAK    APAGLLQPLPIP QVWED+AMDFITGLP+S G TVIMV
Sbjct: 791  KQDIQQFVQNCVICQQAKHETRAPAGLLQPLPIPEQVWEDVAMDFITGLPSSHGYTVIMV 850

Query: 755  VIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVSNRDKVFTSSF*QHLFKL 934
            VIDRLTKY+HF+ ++ DY SKSVAEAFM  IVKLHG+PKSIVS+RDKVF S F + LFKL
Sbjct: 851  VIDRLTKYSHFIPLKMDYNSKSVAEAFMKYIVKLHGLPKSIVSDRDKVFVSQFWKDLFKL 910

Query: 935  QGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTF 1039
            QGTTLAMS+ YHPQ+DGQSEALNKCLEMYLRC TF
Sbjct: 911  QGTTLAMSSAYHPQTDGQSEALNKCLEMYLRCLTF 945



 Score = 90.9 bits (224), Expect(3) = e-120
 Identities = 43/66 (65%), Positives = 47/66 (71%)
 Frame = +3

Query: 126 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
           LLGHKF IKT              TPEQQAWLHKF+GYDF IEYKP K+NVAADALSR+ 
Sbjct: 640 LLGHKFTIKTDQKSLRSLMDQSLQTPEQQAWLHKFIGYDFNIEYKPGKENVAADALSRVL 699

Query: 306 FMAWSE 323
            +AWSE
Sbjct: 700 LVAWSE 705



 Score = 82.8 bits (203), Expect(3) = e-120
 Identities = 40/45 (88%), Positives = 43/45 (95%)
 Frame = +1

Query: 1   VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
           VLSQ GHPIA+FSKKMVP MQKQSAYTR+LFAITEAIAKFRHYL+
Sbjct: 597 VLSQGGHPIAFFSKKMVPRMQKQSAYTRELFAITEAIAKFRHYLL 641


>gb|PNX93203.1| hypothetical protein L195_g016354 [Trifolium pratense]
          Length = 869

 Score =  309 bits (792), Expect(3) = e-120
 Identities = 149/229 (65%), Positives = 182/229 (79%), Gaps = 2/229 (0%)
 Frame = +2

Query: 365  IQGCAQNVD-AEQHYSVKQN-LLYWKDRLVIPEKSSLIQNILNEYHSSPIGGHAGVARTI 538
            +QG     D    H  V++N L+YW +++V+P+  +L   +L E+HSSP+GGHAG+ARTI
Sbjct: 350  LQGLINTSDPVHGHQFVRKNGLVYWNNKIVLPDDKNLKTKLLLEFHSSPVGGHAGIARTI 409

Query: 539  ARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAMDFITG 718
            ARI AQF+W  +K D++ FVQ C++CQQAK    APAGLLQPLPIP QVWED+AMDFITG
Sbjct: 410  ARIAAQFFWKNMKQDIKLFVQNCLICQQAKHDTRAPAGLLQPLPIPEQVWEDIAMDFITG 469

Query: 719  LPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVSNRDKV 898
            LP S G TVIMVVIDRLTKY+HF  ++ DY SK+VAE FM  +VKLHG+PKSIVS+RDKV
Sbjct: 470  LPPSNGYTVIMVVIDRLTKYSHFSPLKIDYNSKTVAEVFMKTVVKLHGLPKSIVSDRDKV 529

Query: 899  FTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            F S F + LF+LQGTTL+MS+ YHPQ+DGQSEALNKCLEMYLRC TF N
Sbjct: 530  FISKFWKELFQLQGTTLSMSSAYHPQTDGQSEALNKCLEMYLRCLTFQN 578



 Score = 92.4 bits (228), Expect(3) = e-120
 Identities = 44/66 (66%), Positives = 48/66 (72%)
 Frame = +3

Query: 126 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
           LLGHKFVI+T              TPEQQAW+HKF+GYDF IEYKP KDNVAADALSR+ 
Sbjct: 266 LLGHKFVIRTDQKSLRSLMDQSLQTPEQQAWIHKFIGYDFTIEYKPGKDNVAADALSRVC 325

Query: 306 FMAWSE 323
            MAWSE
Sbjct: 326 LMAWSE 331



 Score = 81.6 bits (200), Expect(3) = e-120
 Identities = 40/45 (88%), Positives = 43/45 (95%)
 Frame = +1

Query: 1   VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
           VLSQ GHPIA+FSKKMVP MQKQSAYTR+LFAITEAIAKFRHYL+
Sbjct: 223 VLSQLGHPIAFFSKKMVPRMQKQSAYTRELFAITEAIAKFRHYLL 267


>gb|PNX92398.1| Ty3/gypsy retrotransposon protein [Trifolium pratense]
          Length = 1571

 Score =  317 bits (812), Expect(3) = e-117
 Identities = 143/237 (60%), Positives = 185/237 (78%)
 Frame = +2

Query: 335  ISDNSDLQKIIQGCAQNVDAEQHYSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSPIGG 514
            ++D+  L +I   C    +   HY VK ++L+WK+RLVIP+K  LIQ +L E+HSS +GG
Sbjct: 1040 VNDDPALAEIRNQCLLGTNTAPHYQVKHDMLFWKNRLVIPQKPELIQLLLTEFHSSALGG 1099

Query: 515  HAGVARTIARITAQFYWPGLKNDVRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWED 694
            HAG+ RT AR+ +QF+WP +  D+++FV KC++CQQAK     PAGLL PLPIP Q+WED
Sbjct: 1100 HAGITRTKARVASQFFWPTMAKDIKEFVSKCLICQQAKHSTAVPAGLLHPLPIPQQIWED 1159

Query: 695  MAMDFITGLPNSFGSTVIMVVIDRLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKS 874
            ++MDFI GLP S   TVI+VV+DRL+KY+HF+ ++ DY S  VAEAF+  IVKLHG PK+
Sbjct: 1160 LSMDFIIGLPPSHTYTVILVVVDRLSKYSHFIPLKGDYTSSKVAEAFVNTIVKLHGFPKT 1219

Query: 875  IVSNRDKVFTSSF*QHLFKLQGTTLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            IVS+RD+VFTS F QHLFK+ GTTLAMST YHPQ+DGQSEA+NKCLE+YLRCFT D+
Sbjct: 1220 IVSDRDRVFTSQFWQHLFKISGTTLAMSTAYHPQTDGQSEAVNKCLELYLRCFTSDS 1276



 Score = 82.4 bits (202), Expect(3) = e-117
 Identities = 40/75 (53%), Positives = 49/75 (65%)
 Frame = +3

Query: 126  LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
            L+GHKFVIKT              TPEQQ WLHKF+GYDF IEYKP  DN+AAD+LSR F
Sbjct: 962  LIGHKFVIKTDQRSLKSLTDQSIQTPEQQHWLHKFLGYDFTIEYKPGVDNIAADSLSRSF 1021

Query: 306  FMAWSERGNRLAIIV 350
              A S + ++L  ++
Sbjct: 1022 CFALSVQTSQLVAMI 1036



 Score = 74.3 bits (181), Expect(3) = e-117
 Identities = 35/45 (77%), Positives = 40/45 (88%)
 Frame = +1

Query: 1    VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
            VLSQ  HPIAYFSKK+ P MQKQSAY R+L+AITEA+AKFRHYL+
Sbjct: 919  VLSQARHPIAYFSKKLCPRMQKQSAYVRELYAITEALAKFRHYLI 963


>gb|PNY14541.1| hypothetical protein L195_g011223 [Trifolium pratense]
          Length = 763

 Score =  327 bits (838), Expect(3) = e-116
 Identities = 150/214 (70%), Positives = 187/214 (87%)
 Frame = +2

Query: 404  YSVKQNLLYWKDRLVIPEKSSLIQNILNEYHSSPIGGHAGVARTIARITAQFYWPGLKND 583
            Y+++  LLYWK RLVIP+ + L+  IL ++H+SPIGGHAG+ RT++RIT+QFYWP +  D
Sbjct: 251  YTMRDGLLYWKQRLVIPKNNDLLHKILYKFHTSPIGGHAGITRTMSRITSQFYWPDMNKD 310

Query: 584  VRDFVQKCVVCQQAKSINTAPAGLLQPLPIPSQVWEDMAMDFITGLPNSFGSTVIMVVID 763
            + D+VQKCV+CQQAK+++T+PAGLLQPLPIPSQVWED+AMDFITGLP S+  T IMVV+D
Sbjct: 311  IWDYVQKCVICQQAKTVHTSPAGLLQPLPIPSQVWEDIAMDFITGLPLSYSYTTIMVVVD 370

Query: 764  RLTKYAHFVAMRTDYPSKSVAEAFMTNIVKLHGIPKSIVSNRDKVFTSSF*QHLFKLQGT 943
            RLTKYAHF+ MR+DY SKSVAEAF+ NIVKLHG+ KSIVS+RDKVFTS+F Q LFKLQGT
Sbjct: 371  RLTKYAHFIPMRSDYTSKSVAEAFIHNIVKLHGMSKSIVSDRDKVFTSNFWQQLFKLQGT 430

Query: 944  TLAMSTVYHPQSDGQSEALNKCLEMYLRCFTFDN 1045
            +L MS+ YHPQSDGQ+E LNK LE++LRCF+F+N
Sbjct: 431  SLTMSSAYHPQSDGQTEVLNKGLELFLRCFSFNN 464



 Score = 84.0 bits (206), Expect(3) = e-116
 Identities = 39/66 (59%), Positives = 46/66 (69%)
 Frame = +3

Query: 126 LLGHKFVIKTXXXXXXXXXXXXXXTPEQQAWLHKFMGYDFKIEYKPRKDNVAADALSRMF 305
           LLGH+FVI T              TPEQQ WLHKF+GYDF IEYKP K+N+AADALSR+ 
Sbjct: 151 LLGHRFVICTDQKSLRSLMDQSLQTPEQQEWLHKFLGYDFTIEYKPGKENMAADALSRLM 210

Query: 306 FMAWSE 323
            ++WSE
Sbjct: 211 TLSWSE 216



 Score = 59.3 bits (142), Expect(3) = e-116
 Identities = 30/45 (66%), Positives = 35/45 (77%)
 Frame = +1

Query: 1   VLSQNGHPIAYFSKKMVP*MQKQSAYTRKLFAITEAIAKFRHYLV 135
           VL Q GHP A FSKK+V   QK+SAY R++ AI EAIAKFRHYL+
Sbjct: 108 VLHQEGHPNANFSKKLVLRNQKKSAYFREMLAIVEAIAKFRHYLL 152