BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00010930
         (1234 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX92852.1| hypothetical protein L195_g015995, partial [Trifo...   138   8e-32
gb|PNX84261.1| ribonuclease H, partial [Trifolium pratense]           136   1e-31
gb|PNX92765.1| ribonuclease H [Trifolium pratense]                    128   4e-28
gb|PNX93226.1| ribonuclease H, partial [Trifolium pratense]           126   1e-27
gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]           125   3e-27
gb|PNY00178.1| retrotransposon-related protein, partial [Trifoli...   125   3e-27
gb|PNX92520.1| ribonuclease H, partial [Trifolium pratense]           124   4e-27
dbj|GAU20604.1| hypothetical protein TSUD_33400 [Trifolium subte...   119   3e-25
dbj|GAU10788.1| hypothetical protein TSUD_424840, partial [Trifo...   111   7e-25
dbj|GAU12283.1| hypothetical protein TSUD_141910 [Trifolium subt...   112   5e-23
dbj|GAU21723.1| hypothetical protein TSUD_328480 [Trifolium subt...    90   5e-23
dbj|GAU35685.1| hypothetical protein TSUD_162570 [Trifolium subt...   112   7e-23
dbj|GAU51664.1| hypothetical protein TSUD_268670 [Trifolium subt...   111   2e-22
gb|PNY14401.1| ribonuclease H [Trifolium pratense]                    110   2e-22
dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subt...   110   4e-22
gb|PNX92714.1| ribonuclease H [Trifolium pratense]                    110   4e-22
dbj|GAU49954.1| hypothetical protein TSUD_180180 [Trifolium subt...   107   2e-21
gb|PNY05589.1| ribonuclease H [Trifolium pratense]                    105   1e-20
gb|PNX92211.1| ribonuclease H, partial [Trifolium pratense]           105   1e-20
gb|PNX82765.1| ribonuclease H, partial [Trifolium pratense]           103   3e-20

>gb|PNX92852.1| hypothetical protein L195_g015995, partial [Trifolium pratense]
          Length = 664

 Score =  138 bits (347), Expect = 8e-32
 Identities = 75/147 (51%), Positives = 90/147 (61%), Gaps = 7/147 (4%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDD-SICS 1046
            H KT+I+RKRNK          WC DD+TL +EA  ++KNLF S N +   D+DD  +  
Sbjct: 367  HTKTIIRRKRNKIHGLHLPNGIWCTDDSTLKDEAQYYFKNLFCSPNLSNINDIDDRQLAP 426

Query: 1045 KFE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLISKA 866
                     L +   K      L     F +PG DGFQ IFFKQYWHIVGDD++HL+S A
Sbjct: 427  TLNDEACHFLSKQVTKDEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVTHLVSVA 486

Query: 865  FATGTFNNSLSETLIALIPKVDCPQNF 785
            F TG F  SLSETLIALIPKVDCP+NF
Sbjct: 487  FETGEFPQSLSETLIALIPKVDCPKNF 513


>gb|PNX84261.1| ribonuclease H, partial [Trifolium pratense]
          Length = 574

 Score =  136 bits (343), Expect = 1e-31
 Identities = 77/153 (50%), Positives = 92/153 (60%), Gaps = 13/153 (8%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            H KTVI+RKRNK          WC DD TL EEA ++YKNLF SQ     AD+DDS+   
Sbjct: 34   HTKTVIRRKRNKIHGLHLPNGIWCTDDTTLREEAQTYYKNLFCSQTPQVNADIDDSL--- 90

Query: 1042 FE*RGQALLDQTC-------DKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDIS 884
               +   L ++ C        +      L     F +PG DGFQ IFFKQYWHIVGDD+ 
Sbjct: 91   ---QIPTLTEEACLSLTKQITRDEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVV 147

Query: 883  HLISKAFATGTFNNSLSETLIALIPKVDCPQNF 785
             LIS +F TG+F  +L+ETLIALIPKVDCP NF
Sbjct: 148  RLISTSFETGSFPPALAETLIALIPKVDCPTNF 180


>gb|PNX92765.1| ribonuclease H [Trifolium pratense]
          Length = 1310

 Score =  128 bits (321), Expect = 4e-28
 Identities = 69/147 (46%), Positives = 91/147 (61%), Gaps = 7/147 (4%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFS-SQNQTFTADMDDSICS 1046
            HA+T+I+RKRNK          WC +D+ L EEAL F+KNLFS +   + +   D     
Sbjct: 317  HAQTIIRRKRNKIHGLTLPCGSWCTEDSILQEEALKFFKNLFSPATGSSHSHSFDVKYTP 376

Query: 1045 KFE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLISKA 866
            KF+    + L Q   K   +  L       SPG DGFQ +FF++YWHI+G+DI  +I++A
Sbjct: 377  KFDSVQASALTQEVTKEEVYQALNQMHPLKSPGPDGFQGVFFRRYWHIMGEDIYTMINQA 436

Query: 865  FATGTFNNSLSETLIALIPKVDCPQNF 785
            F+TG FN SL+ETLI LIPKVDCP NF
Sbjct: 437  FSTGHFNPSLAETLICLIPKVDCPNNF 463


>gb|PNX93226.1| ribonuclease H, partial [Trifolium pratense]
          Length = 851

 Score =  126 bits (316), Expect = 1e-27
 Identities = 71/148 (47%), Positives = 93/148 (62%), Gaps = 8/148 (5%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFS--SQNQTFTADMDDSIC 1049
            HA+T+I+RKRNK          WC DD  L EEA +F+KNLF+  S NQT   D+D  + 
Sbjct: 317  HAQTIIRRKRNKIHGLTLPCGAWCTDDIILQEEANNFFKNLFAPISNNQTIVFDIDH-VP 375

Query: 1048 SKFE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLISK 869
               E +   LL Q   K      L       +PG DGFQ +FF++YWHI+G+DI +L+S+
Sbjct: 376  KLNEDQASTLLQQI-SKEEVLAALNQMHPLKAPGPDGFQGVFFRRYWHIIGEDIYNLVSQ 434

Query: 868  AFATGTFNNSLSETLIALIPKVDCPQNF 785
            AF TG FN SL+ETLI LIPK+DCP++F
Sbjct: 435  AFNTGYFNPSLAETLICLIPKIDCPKHF 462


>gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1142

 Score =  125 bits (314), Expect = 3e-27
 Identities = 72/158 (45%), Positives = 94/158 (59%), Gaps = 8/158 (5%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            H KT+I+RKRNK          WC+DD  L +EA +++KN F SQ    + +++    + 
Sbjct: 307  HTKTIIRRKRNKIHGLHLPNGIWCNDDTILRQEAQTYFKNFFCSQTPLASGELNGLPLAP 366

Query: 1042 F--E*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLISK 869
               E   Q+L  Q   +      L     F +PG DGFQ IFFKQYWHIVGDD+  +IS 
Sbjct: 367  ILNEEAYQSLSSQVT-RDEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVVRIIST 425

Query: 868  AFATGTFNNSLSETLIALIPKVDCPQNFIRLLNLLLAD 755
            AF TG+F+ S+SETLIALIPKVDCP NF  L  + L +
Sbjct: 426  AFDTGSFHPSISETLIALIPKVDCPNNFKELRPISLCN 463


>gb|PNY00178.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 951

 Score =  125 bits (313), Expect = 3e-27
 Identities = 73/153 (47%), Positives = 87/153 (56%), Gaps = 13/153 (8%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            H +T+I+RKRNK          WC DD TL EEA   +KNLF +QN     D++D     
Sbjct: 802  HTRTIIRRKRNKIHGLHLPGGIWCTDDTTLREEAHKHFKNLFCTQNPYDHNDLNDLP--- 858

Query: 1042 FE*RGQALLDQTCD-------KGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDIS 884
                   L D+ C        +      L     F +PG DGFQ IFFKQYWHIVGDD+ 
Sbjct: 859  ---EAPILNDEACQSLTQQVTREEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVV 915

Query: 883  HLISKAFATGTFNNSLSETLIALIPKVDCPQNF 785
             LI+ AF TG F  +LSETLIALIPKVDCP+NF
Sbjct: 916  RLIATAFETGRFPPTLSETLIALIPKVDCPKNF 948


>gb|PNX92520.1| ribonuclease H, partial [Trifolium pratense]
          Length = 865

 Score =  124 bits (312), Expect = 4e-27
 Identities = 67/146 (45%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            HA+TVI+RKRNK          WC DD  L EEA   +KNLF+  N +     D ++  K
Sbjct: 296  HAQTVIRRKRNKIHGITLPCGAWCTDDTILQEEAKKIFKNLFAPPNNSPHCSFDVAVVPK 355

Query: 1042 FE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLISKAF 863
             +      L     K   F  L       +PG DGFQ +FF+QYWHI+G+DI  ++S+AF
Sbjct: 356  LDAEQVQTLLHHVSKEEVFIALNQMHPLKAPGPDGFQGVFFRQYWHILGNDICDMVSEAF 415

Query: 862  ATGTFNNSLSETLIALIPKVDCPQNF 785
            ATG FN SL+ETLI LIPK DCP++F
Sbjct: 416  ATGQFNPSLAETLICLIPKEDCPKHF 441


>dbj|GAU20604.1| hypothetical protein TSUD_33400 [Trifolium subterraneum]
          Length = 1174

 Score =  119 bits (298), Expect = 3e-25
 Identities = 65/146 (44%), Positives = 83/146 (56%), Gaps = 6/146 (4%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            HA+T+I+RKRNK          W  D ATL +EA +++KN FS    T      +     
Sbjct: 277  HAQTIIRRKRNKIHRLQLPNGVWTTDSATLQDEAQTYFKNFFSIAQPTHDRTFKEGSHPI 336

Query: 1042 FE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLISKAF 863
             +  G   L     K      L     F +PG DGFQ IFFKQYWHIVGDDI HL+  AF
Sbjct: 337  IDDTGITTLTCPITKAEVTATLNSMKPFKAPGPDGFQCIFFKQYWHIVGDDIFHLVKTAF 396

Query: 862  ATGTFNNSLSETLIALIPKVDCPQNF 785
            +TG F++++S TLIALIPK+D P+ F
Sbjct: 397  STGNFDHNISNTLIALIPKIDTPKTF 422


>dbj|GAU10788.1| hypothetical protein TSUD_424840, partial [Trifolium subterraneum]
          Length = 214

 Score =  111 bits (277), Expect = 7e-25
 Identities = 67/153 (43%), Positives = 81/153 (52%), Gaps = 13/153 (8%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            H KTVI+RKRN+          WC D+  L EEA +++K+LF S N      M D+    
Sbjct: 46   HTKTVIRRKRNRIHGLHLRNGIWCTDNDMLQEEAQNYFKHLFCSLNSNDLGGMIDNP--- 102

Query: 1042 FE*RGQALLDQTCD-------KGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDIS 884
               +G  L +  C        K      L     F +P  D FQ IFFKQYWHI+GDD+ 
Sbjct: 103  ---QGPTLNEDACHSLTKHITKEEVTQALNQMHPFKAPSPDDFQGIFFKQYWHIIGDDVV 159

Query: 883  HLISKAFATGTFNNSLSETLIALIPKVDCPQNF 785
             LIS  F  G F  SLSETLIALIPK +CP NF
Sbjct: 160  RLISTTFEIGIFPQSLSETLIALIPKTNCPNNF 192


>dbj|GAU12283.1| hypothetical protein TSUD_141910 [Trifolium subterraneum]
          Length = 1049

 Score =  112 bits (281), Expect = 5e-23
 Identities = 68/150 (45%), Positives = 86/150 (57%), Gaps = 10/150 (6%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            H KTVI+RKRNK          WC DD  L  EA +++K LF S + +    ++D   S 
Sbjct: 327  HTKTVIRRKRNKIHGLHLPNGLWCTDDDLLRGEAHNYFKKLFCSSSPSALNGINDGPHSP 386

Query: 1042 F--E*RGQALLDQTCDK--GGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLI 875
               E   ++L  Q   +       ++ P+    +PG D FQ IFFKQYWHI+GDD+  LI
Sbjct: 387  TLNEEACRSLTSQITKEEVAQALNQMHPFK---APGPDRFQGIFFKQYWHIIGDDVVRLI 443

Query: 874  SKAFATGTFNNSLSETLIALIPKVDCPQNF 785
            S  F TG F  SLSETLIALIPK+DCP NF
Sbjct: 444  STVFETGGFPPSLSETLIALIPKMDCPNNF 473


>dbj|GAU21723.1| hypothetical protein TSUD_328480 [Trifolium subterraneum]
          Length = 806

 Score = 90.1 bits (222), Expect(2) = 5e-23
 Identities = 42/58 (72%), Positives = 45/58 (77%)
 Frame = -1

Query: 961 F*SPGADGFQTIFFKQYWHIVGDDISHLISKAFATGTFNNSLSETLIALIPKVDCPQN 788
           F +PG DGFQ IFF QYWHI+GDD+  LIS AF TG F  SLSETLIALIPK DCP N
Sbjct: 195 FKAPGPDGFQCIFFTQYWHIIGDDVVRLISTAFETGGFPPSLSETLIALIPKTDCPNN 252



 Score = 47.8 bits (112), Expect(2) = 5e-23
 Identities = 22/34 (64%), Positives = 25/34 (73%)
 Frame = -2

Query: 1047 PNLNEEAKHSLIKPVTKEEVSHALSHMHSFKVPG 946
            P LNEEA  SL K +TKEEV+ AL+ MH FK PG
Sbjct: 166  PTLNEEACRSLTKQITKEEVTQALNQMHPFKAPG 199


>dbj|GAU35685.1| hypothetical protein TSUD_162570 [Trifolium subterraneum]
          Length = 1375

 Score =  112 bits (280), Expect = 7e-23
 Identities = 65/131 (49%), Positives = 76/131 (58%), Gaps = 7/131 (5%)
 Frame = -1

Query: 1156 WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSKFE*RGQALLDQTCD-------K 998
            WC DD TL EEA   +KNLF   N      ++D   + F      L D+ C        +
Sbjct: 533  WCTDDTTLREEAQKHFKNLFCILNTCDQNALNDLPEAPF------LNDEACQSLTQQVTR 586

Query: 997  GGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLISKAFATGTFNNSLSETLIA 818
                  L     F +PG DGFQ IFFKQYWHIVGDD+  LIS AF TG F ++LSETLIA
Sbjct: 587  EEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVVRLISTAFETGRFPSTLSETLIA 646

Query: 817  LIPKVDCPQNF 785
            LIPKVDCP+NF
Sbjct: 647  LIPKVDCPKNF 657


>dbj|GAU51664.1| hypothetical protein TSUD_268670 [Trifolium subterraneum]
          Length = 1231

 Score =  111 bits (277), Expect = 2e-22
 Identities = 63/149 (42%), Positives = 83/149 (55%), Gaps = 9/149 (6%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKAL------SFWCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            HA+T+I+RKRN+          W  D + L +EA  +YKN+F S     T          
Sbjct: 393  HAQTIIRRKRNRIHRLQLPNGIWTSDSSILQQEAQHYYKNVFYSNQHNHTPSFTTGSHPI 452

Query: 1042 FE*RGQALLDQTCDKGG---GFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLIS 872
             +  G+  L +   K         +KPY    +PG DGFQ IFFKQYWHIVGDDI +L+ 
Sbjct: 453  IDDLGKTSLTRPVTKEEVTIALNSMKPYK---APGPDGFQCIFFKQYWHIVGDDIFNLVK 509

Query: 871  KAFATGTFNNSLSETLIALIPKVDCPQNF 785
             AF +G F+ ++SETLIALIPK+D P  F
Sbjct: 510  SAFHSGYFDPTISETLIALIPKIDPPSTF 538


>gb|PNY14401.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score =  110 bits (276), Expect = 2e-22
 Identities = 62/146 (42%), Positives = 81/146 (55%), Gaps = 6/146 (4%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            HA+T+I+R+RNK          W  D ATL +EA  ++KN FSS          +     
Sbjct: 366  HAQTIIRRRRNKIHRLQLPNGTWSTDCATLQDEAQLYFKNFFSSTQPVHNRIFREGSHPI 425

Query: 1042 FE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLISKAF 863
             +  G   L     K      L     F +PG DGF  IFFKQYWHIVGDDI HL+  AF
Sbjct: 426  IDDAGITALTCPITKDEVTAALNSMKPFKAPGPDGFHCIFFKQYWHIVGDDIFHLVKTAF 485

Query: 862  ATGTFNNSLSETLIALIPKVDCPQNF 785
            ++G F++++S TLIALIPK+D P+ F
Sbjct: 486  SSGYFDHNISNTLIALIPKIDTPKTF 511


>dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subterraneum]
          Length = 1075

 Score =  110 bits (274), Expect = 4e-22
 Identities = 60/149 (40%), Positives = 85/149 (57%), Gaps = 9/149 (6%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            HA+T+I+RKRN+          W  D + L  EA +++KNLFSS     ++  +      
Sbjct: 158  HAQTIIRRKRNRIHKLQLPNGTWSSDSSILQHEAQNYFKNLFSSSQHNTSSSFNVGTHPT 217

Query: 1042 FE*RGQALLDQTCDKG---GGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLIS 872
             +  G+  L +   K         +KPY    +PG DGFQ IFFKQYWH+VGDDI  L+ 
Sbjct: 218  IDEDGRNSLSKPVTKEEVTAALNSMKPYK---APGPDGFQCIFFKQYWHLVGDDIFDLVK 274

Query: 871  KAFATGTFNNSLSETLIALIPKVDCPQNF 785
             AF TG F+ ++S+TLI+LIPK+D P  +
Sbjct: 275  TAFHTGYFDPTISDTLISLIPKIDSPTTY 303


>gb|PNX92714.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score =  110 bits (274), Expect = 4e-22
 Identities = 68/160 (42%), Positives = 87/160 (54%), Gaps = 10/160 (6%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKA------LSFWCDDDATLGEEALSFYKNLFSS----QNQTFTADMDDS 1055
            HA+T+I+RKRNK          W  D + +  E   F+K+LF S     N +F  +    
Sbjct: 366  HAQTIIRRKRNKIHNIQLPTGIWSSDSSIIQHETQKFFKDLFCSPQSPHNHSFVINTHPI 425

Query: 1054 ICSKFE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLI 875
            I +     G   L +   K      L     F +PG DGFQ IFFKQYWHIVGDDI +L+
Sbjct: 426  IDAD----GCGNLTKDVTKEEVTLALNSMKPFKAPGPDGFQCIFFKQYWHIVGDDIYNLV 481

Query: 874  SKAFATGTFNNSLSETLIALIPKVDCPQNFIRLLNLLLAD 755
              AFATG F++ +SETLIALIPKVD P  F  L  + L +
Sbjct: 482  KNAFATGHFDSKISETLIALIPKVDPPTTFKELRPISLCN 521


>dbj|GAU49954.1| hypothetical protein TSUD_180180 [Trifolium subterraneum]
          Length = 968

 Score =  107 bits (268), Expect = 2e-21
 Identities = 65/149 (43%), Positives = 82/149 (55%), Gaps = 9/149 (6%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            H +T+I+RKRN+          W  D   L  EA  +YKN F+S   +  +   +     
Sbjct: 129  HTQTIIRRKRNRIHRLQLPNGTWTTDSFVLQSEAHQYYKNFFNSNQSSQASPFYNGFHPT 188

Query: 1042 F--E*RGQALLDQTCDK-GGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHLIS 872
               E R   L   T D+       +KPY    +PG DGFQ IFFKQYWHIVGDDI +L+ 
Sbjct: 189  IDEEERQSLLRPVTKDEVSAALNSMKPYK---APGPDGFQCIFFKQYWHIVGDDIFNLVK 245

Query: 871  KAFATGTFNNSLSETLIALIPKVDCPQNF 785
             AF TG F+ ++SETLIALIPKVD P  F
Sbjct: 246  TAFHTGYFDPAISETLIALIPKVDPPTTF 274


>gb|PNY05589.1| ribonuclease H [Trifolium pratense]
          Length = 1360

 Score =  105 bits (262), Expect = 1e-20
 Identities = 60/146 (41%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKAL------SFWCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            HA+T+I+RK+NK          W  D   L EEA   +KNLF++        +++     
Sbjct: 366  HAQTIIRRKKNKVHRIQLPNGIWTTDSVILQEEAQKIFKNLFTNNQPNQNRTLNEGTHPT 425

Query: 1042 FE*RGQALLDQTC-----DKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHL 878
             +  G    + TC     +       +KPY    +PG DGFQ IFFKQYWHIVGDDI HL
Sbjct: 426  IDDFGS--FELTCPITKEEVTAALNSMKPYK---APGPDGFQCIFFKQYWHIVGDDIFHL 480

Query: 877  ISKAFATGTFNNSLSETLIALIPKVD 800
            +  AF+TG F+ ++S TLI+LIPKV+
Sbjct: 481  VKIAFSTGYFDPNISNTLISLIPKVE 506


>gb|PNX92211.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1462

 Score =  105 bits (262), Expect = 1e-20
 Identities = 60/146 (41%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKAL------SFWCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1043
            HA+T+I+RK+NK          W  D   L EEA   +KNLF++        +++     
Sbjct: 581  HAQTIIRRKKNKVHRIQLPNGIWTTDSVILQEEAQKIFKNLFTNNQPNQNRTLNEGTHPT 640

Query: 1042 FE*RGQALLDQTC-----DKGGGFPRLKPYAFF*SPGADGFQTIFFKQYWHIVGDDISHL 878
             +  G    + TC     +       +KPY    +PG DGFQ IFFKQYWHIVGDDI HL
Sbjct: 641  IDDFGS--FELTCPITKEEVTAALNSMKPYK---APGPDGFQCIFFKQYWHIVGDDIFHL 695

Query: 877  ISKAFATGTFNNSLSETLIALIPKVD 800
            +  AF+TG F+ ++S TLI+LIPKV+
Sbjct: 696  VKIAFSTGYFDPNISNTLISLIPKVE 721


>gb|PNX82765.1| ribonuclease H, partial [Trifolium pratense]
          Length = 611

 Score =  103 bits (258), Expect = 3e-20
 Identities = 70/168 (41%), Positives = 88/168 (52%), Gaps = 14/168 (8%)
 Frame = -1

Query: 1204 HAKTVIQRKRNKALSF-----WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSKF 1040
            HA+TVI+R+RNK         WC D  TL  EA  F+K+LF S +      ++     + 
Sbjct: 274  HAQTVIRRRRNKICGLNIEGVWCTDAETLKREASKFFKHLFQSNDPCHPHGLNLVQIPQI 333

Query: 1039 E*RGQALLDQTCDKGGGFPRLKPYAF----F*SPGADGFQTIFFKQYWHIVGDDISHLIS 872
               GQ L D           +K   F    + SPG DGFQ IFFK YW  VG D+ HL+S
Sbjct: 334  ---GQELYDILLQPVL-LEEVKAAIFSMESYKSPGPDGFQPIFFKTYWDTVGKDVWHLVS 389

Query: 871  KAFATGTFNNSLSETLIALIPKVDCPQNF-----IRLLNLLLADASGV 743
            +AF+TG  +  L+ETLI LIPKVD P  F     I L N+LL   S V
Sbjct: 390  EAFSTGVIDPKLAETLIVLIPKVDVPSTFKDFRPISLCNVLLKTISKV 437