BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00010923
         (1267 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU50521.1| hypothetical protein TSUD_177710 [Trifolium subt...   172   1e-64
gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]   138   7e-60
gb|KYP42102.1| Retrovirus-related Pol polyprotein from transposo...   131   1e-57
gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]            174   5e-57
emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]     134   7e-57
emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]   129   2e-55
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   128   1e-54
gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposo...   156   1e-54
emb|CAN79845.1| hypothetical protein VITISV_027568 [Vitis vinifera]   144   1e-54
dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subt...   179   2e-54
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   176   3e-54
gb|PNX83704.1| copia-type polyprotein, partial [Trifolium pratense]   136   4e-54
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   177   5e-54
gb|PNX95763.1| retrotransposon-related protein, partial [Trifoli...   155   7e-54
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   177   7e-54
gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposo...   126   7e-54
gb|PNX90684.1| retrovirus-related Pol polyprotein from transposo...   127   9e-54
gb|KYP40819.1| Retrovirus-related Pol polyprotein from transposo...   124   2e-53
gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]            170   3e-53
gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]   123   4e-53

>dbj|GAU50521.1| hypothetical protein TSUD_177710 [Trifolium subterraneum]
          Length = 911

 Score =  172 bits (435), Expect(3) = 1e-64
 Identities = 89/152 (58%), Positives = 110/152 (72%), Gaps = 6/152 (3%)
 Frame = +2

Query: 830  IQGKKRVDENK---RTRRPPVWWNDYDTGNRALFEEM--SLAVFSTA-DPTTFEEAVQSS 991
            +Q     D+N+   R R+ P    D+  G  A  E+   SLAV+S   DPT++EEA +S 
Sbjct: 485  VQNLSSDDDNELGPRIRKTPGHLRDFVIGREAEEEQELHSLAVYSVGEDPTSYEEASKSH 544

Query: 992  VWQQAMDSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYA 1171
             W+QAMD EI+AIE NNTW+L+DLP    +IGVKWVYKTK NE GK++K KARLV KGY+
Sbjct: 545  KWKQAMDVEIEAIEANNTWELIDLPKGAKAIGVKWVYKTKYNEMGKIDKFKARLVVKGYS 604

Query: 1172 QKYGIDYNEVFAPVARWDTIRAILAVAALRGW 1267
            QKYGIDYNEVFAPVARW+TIR +LA AA +GW
Sbjct: 605  QKYGIDYNEVFAPVARWETIRTVLAFAASKGW 636



 Score =  103 bits (256), Expect(3) = 1e-64
 Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 5/125 (4%)
 Frame = +1

Query: 382 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 561
           D + LWH R+GHLS  GLK+L  K+MV+G P +      C DC  GKQ R++ P ++ WR
Sbjct: 368 DKTQLWHNRYGHLSINGLKLLHNKDMVKGLPAIGNMEDKCTDCLTGKQQRQAIPKQANWR 427

Query: 562 VTKVLELIHSDICGPITPASKSNKR--DKNTSKGKEVID---CDDGEVDAPEEEQETAIT 726
            T   +LIHSDICGPI P S   K   D  TS  +  I+    D+G  DA ++E +    
Sbjct: 428 ATTKFQLIHSDICGPINPCSNGGKSTVDAPTSAVEVPIENNVTDNGSTDAEDQEHQVVQN 487

Query: 727 PSNEE 741
            S+++
Sbjct: 488 LSSDD 492



 Score = 23.1 bits (48), Expect(3) = 1e-64
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
 Frame = +3

Query: 219 VFYVP-DLKNNLISI----GQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           V+YV  D  N++I +    G +  K ++ +IF+++ CK +  ++ L
Sbjct: 293 VWYVDSDCSNHMIVVHEWKGFMNGKKNVTIIFKNDICKAYDDEKGL 338


>gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1062

 Score =  138 bits (348), Expect(2) = 7e-60
 Identities = 62/109 (56%), Positives = 85/109 (77%)
 Frame = +3

Query: 9   SQEENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLK 188
           +  E G     +WFLDS C NHMCGTK+WF N D  F+  VK G+  ++ V G+G+VKL+
Sbjct: 308 AHSEKGSYDKKVWFLDSGCRNHMCGTKDWFFNLDEQFRISVKLGDNSRMMVVGKGNVKLR 367

Query: 189 IGGITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKR 335
           IGGITQV+TNV+Y+P+LKNNL+SIGQLQEKG L V+F+++ C+V+H++R
Sbjct: 368 IGGITQVITNVYYIPELKNNLLSIGQLQEKG-LTVVFKEDMCRVYHQER 415



 Score =  122 bits (307), Expect(2) = 7e-60
 Identities = 56/85 (65%), Positives = 66/85 (77%)
 Frame = +1

Query: 382 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 561
           D+++LWHCR+G+LSQKGLKIL QKNMV G P L +SS +C DC IGKQHRE F   ST R
Sbjct: 447 DVTYLWHCRYGYLSQKGLKILEQKNMVRGLPKLQDSSNVCSDCMIGKQHREPFLKVSTRR 506

Query: 562 VTKVLELIHSDICGPITPASKSNKR 636
            TK L+LIH+D+ GPI P S SNKR
Sbjct: 507 ATKRLQLIHADVFGPIKPESNSNKR 531


>gb|KYP42102.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 538

 Score =  131 bits (329), Expect(2) = 1e-57
 Identities = 55/85 (64%), Positives = 70/85 (82%)
 Frame = +1

Query: 382 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 561
           D++HLWHCRFGHLS KGL+ L QK MV+G P L   SK+C DC  GKQHR+SFP++S+WR
Sbjct: 426 DVAHLWHCRFGHLSFKGLQTLQQKEMVKGLPLLKSPSKLCKDCIAGKQHRDSFPIKSSWR 485

Query: 562 VTKVLELIHSDICGPITPASKSNKR 636
            +++L+L+H+DICGPI PAS SNKR
Sbjct: 486 ASQILQLVHADICGPIKPASNSNKR 510



 Score =  122 bits (306), Expect(2) = 1e-57
 Identities = 54/109 (49%), Positives = 77/109 (70%)
 Frame = +3

Query: 15  EENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIG 194
           EE  + K  +WFLDS CSNHMCG +E+F + D  F + VK GN   + V G+G+++LKI 
Sbjct: 287 EEIEQHKTDMWFLDSGCSNHMCGKREYFSDLDENFTDLVKLGNNSNIVVNGKGNIRLKID 346

Query: 195 GITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           GI  +++ VFYV +LKNNL+S+GQLQEKG L ++F+   CK++H  + L
Sbjct: 347 GIISIISGVFYVLELKNNLLSLGQLQEKG-LSILFQQGHCKIYHPDKGL 394


>gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]
          Length = 1324

 Score =  130 bits (328), Expect(2) = 5e-57
 Identities = 62/113 (54%), Positives = 88/113 (77%)
 Frame = +3

Query: 3   THSQEENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVK 182
           TH++EE       +WFLDS CSNHM GTKEW  ++D +F+E VK G+  +++V GRG++K
Sbjct: 291 THAKEE-------VWFLDSGCSNHMIGTKEWLFDYDDSFRESVKLGDDSRMSVMGRGNLK 343

Query: 183 LKIGGITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           L+I GITQV+TNV+++P LKNNL+SIGQLQ+K  + ++F+D+ CKVFH +R L
Sbjct: 344 LQICGITQVITNVYFLPGLKNNLLSIGQLQQK-DVTIVFKDDLCKVFHEQRGL 395



 Score =  120 bits (302), Expect(2) = 5e-57
 Identities = 52/83 (62%), Positives = 60/83 (72%)
 Frame = +1

Query: 388 SHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWRVT 567
           SHLWHCR+GHLS KGL  LV++NMV+G P L E    C DC IGKQHR+S P ++ WR T
Sbjct: 427 SHLWHCRYGHLSFKGLNTLVKRNMVKGLPQLQEIETNCSDCMIGKQHRDSIPKQANWRAT 486

Query: 568 KVLELIHSDICGPITPASKSNKR 636
           K LEL+HSDICGPI P S    R
Sbjct: 487 KKLELVHSDICGPINPTSNGGNR 509



 Score =  174 bits (442), Expect = 7e-44
 Identities = 85/138 (61%), Positives = 107/138 (77%), Gaps = 3/138 (2%)
 Frame = +2

Query: 863  RTRRPPVWWNDYDTGNRALFEEM--SLAVFST-ADPTTFEEAVQSSVWQQAMDSEIQAIE 1033
            R ++ P + NDY TG     +E   +LAVFST  DPTT++EA +  VW++AMD EI++IE
Sbjct: 780  RPKKKPGYLNDYVTGLTDEEQEQMNNLAVFSTNGDPTTYDEAHKQEVWRKAMDQEIESIE 839

Query: 1034 RNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVFAPV 1213
             N TWKL  LP    +IGVKW+YKTK NE+G+VEK+KARLVAKGY+Q+YGIDYNEVFAPV
Sbjct: 840  NNKTWKLTSLPQGAKTIGVKWIYKTKYNEKGEVEKYKARLVAKGYSQQYGIDYNEVFAPV 899

Query: 1214 ARWDTIRAILAVAALRGW 1267
            ARWDTIR +L +AA +GW
Sbjct: 900  ARWDTIRTLLCIAASKGW 917


>emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]
          Length = 3048

 Score =  134 bits (336), Expect(2) = 7e-57
 Identities = 60/107 (56%), Positives = 82/107 (76%)
 Frame = +3

Query: 21  NGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIGGI 200
           N   +   WFLDS CSNHMCG K++F +FDGTF++ VK GN   ++V G+G+V+LK+  +
Sbjct: 312 NKTSREDTWFLDSGCSNHMCGKKDYFSDFDGTFRDSVKLGNNTSMSVLGKGNVRLKVNEM 371

Query: 201 TQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           TQ++T VFYVP+LKNNL+SIGQLQEKG L ++F+   CKVFH ++ L
Sbjct: 372 TQIITGVFYVPELKNNLLSIGQLQEKG-LTILFQHGKCKVFHSQKGL 417



 Score =  117 bits (293), Expect(2) = 7e-57
 Identities = 50/88 (56%), Positives = 61/88 (69%)
 Frame = +1

Query: 373 VQSDISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMES 552
           V  DI  LWHCR+GHLS +GLK L Q+ MV G P     SK+C DC +GKQHR S P +S
Sbjct: 446 VTEDILQLWHCRYGHLSFQGLKTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRSSIPKKS 505

Query: 553 TWRVTKVLELIHSDICGPITPASKSNKR 636
            WR  ++L+L+H+DICGPI P S S KR
Sbjct: 506 NWRAAEILQLVHADICGPINPISNSKKR 533


>emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]
          Length = 2408

 Score =  129 bits (324), Expect(2) = 2e-55
 Identities = 56/109 (51%), Positives = 82/109 (75%)
 Frame = +3

Query: 15  EENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIG 194
           E N  R+  +WFLDS CSNHMC  KEWF + D  F++ VK GN  K+AV G+ +++L+I 
Sbjct: 227 ELNQSRREDVWFLDSGCSNHMCANKEWFLDLDEEFRQSVKLGNNSKMAVLGKDNIRLQIA 286

Query: 195 GITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           G+TQV+T+VFY+P+LKNNL+S+GQLQE+G + ++ +   C+V+H K+ L
Sbjct: 287 GVTQVITDVFYIPELKNNLLSVGQLQERG-VAILIQHGVCRVYHPKKGL 334



 Score =  117 bits (292), Expect(2) = 2e-55
 Identities = 50/88 (56%), Positives = 62/88 (70%)
 Frame = +1

Query: 373 VQSDISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMES 552
           +  D +HLWHCR+GHLS KGL+ L  K MV G P L   SKIC DC +GKQHR++ P  S
Sbjct: 363 ILEDNTHLWHCRYGHLSFKGLRTLQYKQMVRGLPQLKAPSKICTDCMVGKQHRDAIPKRS 422

Query: 553 TWRVTKVLELIHSDICGPITPASKSNKR 636
            WR ++ L+L+H+DICGPI P S S KR
Sbjct: 423 LWRASQRLQLVHADICGPIKPISNSKKR 450



 Score =  107 bits (266), Expect = 6e-21
 Identities = 48/94 (51%), Positives = 64/94 (68%)
 Frame = +2

Query: 938  AVFSTADPTTFEEAVQSSVWQQAMDSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLN 1117
            A+ +  +P T+ EA    +WQ AM  E+ A+ +N+TW LV LP     +G KW+YK K  
Sbjct: 1962 ALATLHEPQTYREASTDPLWQIAMKEELDALTKNHTWDLVPLPPGQSVVGCKWIYKIKTR 2021

Query: 1118 EEGKVEKHKARLVAKGYAQKYGIDYNEVFAPVAR 1219
             +G VE++KARLVAKG+ Q+YGIDY E FAPVAR
Sbjct: 2022 SDGSVERYKARLVAKGFTQEYGIDYEETFAPVAR 2055



 Score = 65.5 bits (158), Expect = 2e-07
 Identities = 32/56 (57%), Positives = 40/56 (71%)
 Frame = +2

Query: 923  EEMSLAVFSTADPTTFEEAVQSSVWQQAMDSEIQAIERNNTWKLVDLPVNTCSIGV 1090
            EE    V  +++PTTFEEA+QSS W+ AMD EI+AIERN TW+L DLP     IG+
Sbjct: 581  EEERGEVSLSSNPTTFEEAIQSSKWRAAMDLEIEAIERNGTWELTDLPKGMKKIGL 636


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  128 bits (322), Expect(2) = 1e-54
 Identities = 55/109 (50%), Positives = 81/109 (74%)
 Frame = +3

Query: 15  EENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIG 194
           E N  +   +WFLDS CSNHMC  K+WF N D  F+  VK GN  +++V G+GS++LK+ 
Sbjct: 299 ERNDSKPEDVWFLDSGCSNHMCCNKDWFTNIDEEFRHSVKLGNNARMSVMGKGSIRLKVD 358

Query: 195 GITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           G+TQV+++V++VP+L+NNL+SIGQLQEKG L ++ +   CK++H K+ L
Sbjct: 359 GLTQVISDVYFVPELRNNLLSIGQLQEKG-LAILIQHGVCKIYHSKKGL 406



 Score =  115 bits (288), Expect(2) = 1e-54
 Identities = 47/85 (55%), Positives = 64/85 (75%)
 Frame = +1

Query: 382 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 561
           D+SHLWHCR+ HL+ KGLK L  + MV+G P +  S+++C DC +GKQ R+S P  S WR
Sbjct: 439 DLSHLWHCRYSHLNYKGLKTLHYRKMVKGLPQIKASARVCHDCLVGKQSRDSIPKSSQWR 498

Query: 562 VTKVLELIHSDICGPITPASKSNKR 636
            ++ L+L+H+DICGPITP S S+KR
Sbjct: 499 ASQRLQLVHADICGPITPTSNSDKR 523


>gb|KYP63625.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 930

 Score =  123 bits (308), Expect(2) = 1e-54
 Identities = 54/88 (61%), Positives = 67/88 (76%)
 Frame = +1

Query: 373 VQSDISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMES 552
           V  D++ LWHCRFGHLS KGL+ L QK MVEG   L   SK+C D  IGKQHR+SFPM+S
Sbjct: 401 VTEDVAQLWHCRFGHLSFKGLQTLQQKGMVEGLAMLKPPSKLCKDYLIGKQHRDSFPMKS 460

Query: 553 TWRVTKVLELIHSDICGPITPASKSNKR 636
           +WR +++L+L+H+DICGPI P S S KR
Sbjct: 461 SWRASQILQLVHADICGPIKPVSNSKKR 488



 Score =  120 bits (302), Expect(2) = 1e-54
 Identities = 51/109 (46%), Positives = 75/109 (68%)
 Frame = +3

Query: 15  EENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIG 194
           E   ++K  +WFLDS CSNHMCG KE+F   D TF + VK GN   + V G+G+++L + 
Sbjct: 265 ETKEQQKTDVWFLDSRCSNHMCGKKEYFSELDETFSDSVKLGNNSNMVVNGKGNIRLDVN 324

Query: 195 GITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           G+  +++  FYVP+LKNNL+ +GQLQEKG L ++F+   CK++H  + L
Sbjct: 325 GVISIISGGFYVPELKNNLLGLGQLQEKG-LSILFQQGKCKIYHPDKGL 372



 Score =  156 bits (394), Expect = 1e-37
 Identities = 77/141 (54%), Positives = 99/141 (70%), Gaps = 6/141 (4%)
 Frame = +2

Query: 863  RTRRPPVWWNDYDTGN-----RALFEEMSLAVFST-ADPTTFEEAVQSSVWQQAMDSEIQ 1024
            R+RR   W  DY +G       A+F     A+++  A+P  FEEAV+   W+ AMD EI+
Sbjct: 751  RSRRQSTWLRDYVSGEGLFDEEAVFYSAFFALYTAGAEPLNFEEAVKIEKWRNAMDIEIE 810

Query: 1025 AIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVF 1204
            AIE+N TW+L+D P     +GVKWVYKTKLNE+GKV+K KARLV KGYAQ+YGIDY EVF
Sbjct: 811  AIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQQYGIDYTEVF 870

Query: 1205 APVARWDTIRAILAVAALRGW 1267
            APVA  +T+R ++A AA +GW
Sbjct: 871  APVACMETVRLVIAYAAQKGW 891


>emb|CAN79845.1| hypothetical protein VITISV_027568 [Vitis vinifera]
          Length = 1226

 Score =  129 bits (324), Expect(2) = 1e-54
 Identities = 58/107 (54%), Positives = 80/107 (74%)
 Frame = +3

Query: 21  NGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIGGI 200
           N   +   WFLDS C+NHMCG K++F +FDGTF++ VK  N   + V G+G+V+LK+  +
Sbjct: 230 NKTSREDTWFLDSGCNNHMCGKKDYFSDFDGTFRDSVKLXNNTSMXVLGKGNVRLKVNEM 289

Query: 201 TQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           TQ++T VFYVP+LKNNL+SIGQLQEKG L ++F+   CKVFH ++ L
Sbjct: 290 TQIITGVFYVPELKNNLLSIGQLQEKG-LTILFQHGKCKVFHSQKXL 335



 Score =  114 bits (285), Expect(2) = 1e-54
 Identities = 49/88 (55%), Positives = 61/88 (69%)
 Frame = +1

Query: 373 VQSDISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMES 552
           V +DI  LWHCR+GHLS +GL+ L Q+ MV G P     SK+C DC +GKQHR S P +S
Sbjct: 364 VTADILQLWHCRYGHLSFQGLQTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRSSIPKKS 423

Query: 553 TWRVTKVLELIHSDICGPITPASKSNKR 636
            WR  ++L L+H+DICGPI P S S KR
Sbjct: 424 NWRAAEILLLVHADICGPINPISNSKKR 451



 Score =  144 bits (364), Expect = 1e-33
 Identities = 76/164 (46%), Positives = 102/164 (62%), Gaps = 4/164 (2%)
 Frame = +2

Query: 788  AASTNNTVTPVRFKIQGKKRVDENK--RTRRPPVWWNDYDTGNRALFEE--MSLAVFSTA 955
            A  ++  VT     IQ +     +   R RRPPVW +DY+TG     EE  + LA+F+ A
Sbjct: 669  ATESDAAVTASHLLIQNRDNPSNSNAARNRRPPVWTSDYETGEGISEEEHEVQLAMFAAA 728

Query: 956  DPTTFEEAVQSSVWQQAMDSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVE 1135
            DP  FEEAV+S  W+  MD E++AI++N+TW+L DLP    +IGVKWVYKTK NE G   
Sbjct: 729  DPIYFEEAVKSEKWRTTMDVEMEAIKKNDTWELTDLPKGGKTIGVKWVYKTKFNENG--- 785

Query: 1136 KHKARLVAKGYAQKYGIDYNEVFAPVARWDTIRAILAVAALRGW 1267
                        +++G+DY EVFAPVAR +TIR ++A+AA RGW
Sbjct: 786  ------------ERFGVDYTEVFAPVARMETIRLVVALAAQRGW 817


>dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  122 bits (306), Expect(2) = 2e-54
 Identities = 56/85 (65%), Positives = 64/85 (75%)
 Frame = +1

Query: 382 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 561
           DI+ LWHCR+GHL+ KGL+ L QKNMV G P   ES+ +C DC  GKQHRES P  S W+
Sbjct: 420 DITQLWHCRYGHLNIKGLQNLQQKNMVIGLPKFEESNHVCADCLRGKQHRESIPKTSNWK 479

Query: 562 VTKVLELIHSDICGPITPASKSNKR 636
            +K LELIHSDICGPITP S SNKR
Sbjct: 480 SSKRLELIHSDICGPITPVSNSNKR 504



 Score =  120 bits (302), Expect(2) = 2e-54
 Identities = 54/125 (43%), Positives = 87/125 (69%)
 Frame = +3

Query: 6   HSQEENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKL 185
           H    +   +  +W++DS CSNHMCG KEWF + D +F+E V+ G+  +++V G+G+VKL
Sbjct: 281 HESTSSNNPRAKVWYIDSGCSNHMCGIKEWFHDLDESFRESVRLGDDSQMSVMGKGNVKL 340

Query: 186 KIGGITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDLSSPAL*PR 365
           ++ GI Q++T V+++P LKNNL+S+GQLQEK +L  + ++N CKV+HR + +        
Sbjct: 341 QMNGIVQIITGVYFIPKLKNNLLSLGQLQEK-NLTFVIKNNWCKVYHRDKGM-------- 391

Query: 366 IICSE 380
           I+CS+
Sbjct: 392 IMCSQ 396



 Score =  179 bits (454), Expect = 2e-45
 Identities = 86/142 (60%), Positives = 110/142 (77%), Gaps = 7/142 (4%)
 Frame = +2

Query: 863  RTRRPPVWWNDYDTG--NRALFEEMSLAVFS-----TADPTTFEEAVQSSVWQQAMDSEI 1021
            RTR+PP W +DYDT      L +E S+   +     + DP++FEEAV+SS W+ AM+ EI
Sbjct: 781  RTRKPPFWHSDYDTTITEDELVDEDSMNFITFGPCTSEDPSSFEEAVKSSTWRLAMNKEI 840

Query: 1022 QAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEV 1201
            +AIE+N TW+L DLP     IGVKW+YKTKLNE+G++EK+KARLVAKGYAQ+YG DY EV
Sbjct: 841  EAIEKNKTWQLTDLPQGAKVIGVKWIYKTKLNEKGEIEKYKARLVAKGYAQRYGTDYKEV 900

Query: 1202 FAPVARWDTIRAILAVAALRGW 1267
            FAPVARWDTIR++LA++A RGW
Sbjct: 901  FAPVARWDTIRSLLAISASRGW 922


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  122 bits (305), Expect(2) = 3e-54
 Identities = 53/109 (48%), Positives = 81/109 (74%)
 Frame = +3

Query: 15  EENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIG 194
           E N  +   +WFLDS CSNHM G K+WF + +  F++ VK GN  K+AV G+G+V+L+  
Sbjct: 287 ELNNSKMEEVWFLDSGCSNHMSGNKKWFIDLNEQFRQSVKLGNNSKMAVMGKGNVRLQAN 346

Query: 195 GITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           G+TQV T+V+Y+P+LKNNL+SIGQLQEKG + ++ ++  C+++H ++ L
Sbjct: 347 GVTQVFTDVYYIPELKNNLLSIGQLQEKG-VAILIQNGMCQIYHPRKGL 394



 Score =  120 bits (301), Expect(2) = 3e-54
 Identities = 53/88 (60%), Positives = 63/88 (71%)
 Frame = +1

Query: 373 VQSDISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMES 552
           V  D +HLWHCR+GHLS KGLK L  +NMV+G P     SK+C DC +GKQHRES P +S
Sbjct: 423 VSEDNTHLWHCRYGHLSFKGLKTLQYRNMVKGLPDFKMPSKLCKDCMVGKQHRESIPKKS 482

Query: 553 TWRVTKVLELIHSDICGPITPASKSNKR 636
            WR +  L+LIHSDICGPI P S + KR
Sbjct: 483 MWRASHRLQLIHSDICGPIKPLSNNRKR 510



 Score =  176 bits (445), Expect = 3e-44
 Identities = 86/146 (58%), Positives = 107/146 (73%), Gaps = 3/146 (2%)
 Frame = +2

Query: 839  KKRVDENKRTRRPPVWWNDYDTGNRALFEEMSLAVF---STADPTTFEEAVQSSVWQQAM 1009
            ++ + E  RTR  PVW  DY +G     EE +  V    S  DP TFEEA +S+ W+ AM
Sbjct: 770  EEEILEEGRTRMQPVWMQDYVSGEGLSEEEETNNVVMFTSVTDPATFEEAFKSAKWKAAM 829

Query: 1010 DSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGID 1189
            D EI+AIERN+TW+L  LP    +IGVKW++KTKLNE G+V+K KARLVAKGYAQ+YGID
Sbjct: 830  DQEIEAIERNHTWELTTLPAGAKTIGVKWIFKTKLNENGEVDKCKARLVAKGYAQQYGID 889

Query: 1190 YNEVFAPVARWDTIRAILAVAALRGW 1267
            Y EVFAPVARWDTIR ++A+AA +GW
Sbjct: 890  YTEVFAPVARWDTIRMVIALAAQKGW 915


>gb|PNX83704.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 598

 Score =  136 bits (343), Expect(3) = 4e-54
 Identities = 64/105 (60%), Positives = 84/105 (80%)
 Frame = +3

Query: 27  ERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIGGITQ 206
           + KN LWFLDS CSNHM G K W   +DGTFK+ VK G+  K+AVEG+G++KL I G TQ
Sbjct: 306 DAKNELWFLDSGCSNHMVGNKNWLFEYDGTFKDSVKLGDDSKMAVEGKGNLKLHIEGFTQ 365

Query: 207 VVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           V+TNV+Y+P LKNNL+SIGQLQ+K +L VIF++++CKVFH ++ L
Sbjct: 366 VLTNVYYLPGLKNNLLSIGQLQQK-NLTVIFKNDTCKVFHEEKGL 409



 Score = 99.0 bits (245), Expect(3) = 4e-54
 Identities = 43/85 (50%), Positives = 57/85 (67%)
 Frame = +1

Query: 382 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 561
           D ++LWH R+GHLS KG+ +L  K MV G P L +  + C +C  GKQ R++ P +S+WR
Sbjct: 441 DNANLWHQRYGHLSFKGMNVLAHKGMVIGLPKLKQPDEECSNCMKGKQQRKNVPKKSSWR 500

Query: 562 VTKVLELIHSDICGPITPASKSNKR 636
            +  LEL+HSDICGPI P S   KR
Sbjct: 501 ASTKLELVHSDICGPINPESNGRKR 525



 Score = 27.3 bits (59), Expect(3) = 4e-54
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 326 QEKGLIITSIMTKNYMFRVTSPI 394
           +EKGLI+ + MT N MF + +P+
Sbjct: 405 EEKGLIMATHMTMNRMFVIKAPV 427


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  121 bits (304), Expect(2) = 5e-54
 Identities = 53/109 (48%), Positives = 80/109 (73%)
 Frame = +3

Query: 15  EENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIG 194
           E N  +   +WFLDS CSNHM G K+WF + +  F++ VK GN  K+AV G+G+V+L+  
Sbjct: 8   ELNNSKMEEVWFLDSGCSNHMSGNKQWFTDLNEQFRQSVKLGNNSKMAVMGKGNVRLQAN 67

Query: 195 GITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           G+TQV T+V+Y+P+LKNNL+SIGQLQEKG + ++  +  C+++H ++ L
Sbjct: 68  GVTQVFTDVYYIPELKNNLLSIGQLQEKG-VTILIRNGMCQIYHPRKGL 115



 Score =  120 bits (300), Expect(2) = 5e-54
 Identities = 53/88 (60%), Positives = 63/88 (71%)
 Frame = +1

Query: 373 VQSDISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMES 552
           V  D +HLWHCR+GHLS KGL+ L  + MV+G P    SSK+C DC +GKQHRES P +S
Sbjct: 144 VSEDNTHLWHCRYGHLSFKGLRTLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKS 203

Query: 553 TWRVTKVLELIHSDICGPITPASKSNKR 636
            WR +  L+LIHSDICGPI P S S KR
Sbjct: 204 MWRASHRLQLIHSDICGPIKPLSNSRKR 231



 Score =  177 bits (448), Expect = 1e-44
 Identities = 87/146 (59%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
 Frame = +2

Query: 839  KKRVDENKRTRRPPVWWNDYDTGNRALFEEMS--LAVFS-TADPTTFEEAVQSSVWQQAM 1009
            ++ + E  RTR  PVW  DY +G     EE +  + +F+   DPTTFEEA +S+ W+ AM
Sbjct: 490  EEEILEEGRTRMQPVWMQDYVSGEGLSEEEETNNIVMFTYVTDPTTFEEAFKSAKWKAAM 549

Query: 1010 DSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGID 1189
            D EI+AIERN+TW+L  LP    +IGVKW++KTKLNE G+VEK KARLVAKGYAQ+YGID
Sbjct: 550  DQEIEAIERNHTWELTILPAGAKTIGVKWIFKTKLNENGEVEKCKARLVAKGYAQQYGID 609

Query: 1190 YNEVFAPVARWDTIRAILAVAALRGW 1267
            Y EVFAPVARWDTIR ++A+AA +GW
Sbjct: 610  YTEVFAPVARWDTIRMVIALAAKKGW 635


>gb|PNX95763.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 1327

 Score =  129 bits (324), Expect(2) = 7e-54
 Identities = 61/107 (57%), Positives = 79/107 (73%)
 Frame = +3

Query: 15  EENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIG 194
           EE  E +  +WFLDS CSNHM G KEWF + +  FK+ VK GN  ++AV G GSV+L + 
Sbjct: 288 EEKKETREEIWFLDSGCSNHMSGNKEWFTDLNEDFKQTVKLGNDSRIAVTGIGSVRLWVN 347

Query: 195 GITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKR 335
           GI QV+TNV+Y+P+LKNNL+SIGQLQEKG L V+ ++ +CKV H  R
Sbjct: 348 GIVQVITNVYYIPELKNNLLSIGQLQEKG-LTVLIQNGTCKVLHPSR 393



 Score =  112 bits (279), Expect(2) = 7e-54
 Identities = 48/85 (56%), Positives = 59/85 (69%)
 Frame = +1

Query: 382 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 561
           D S LWH RFGHL+ KGL+ L  + MVEG PT+    K+C  C +GKQHR+  P  + WR
Sbjct: 427 DESRLWHSRFGHLNYKGLRTLAYRGMVEGLPTVKTPQKLCTHCLVGKQHRDPIPKRNLWR 486

Query: 562 VTKVLELIHSDICGPITPASKSNKR 636
            T  L+L+HSDICGPI+P S SNKR
Sbjct: 487 ATHKLQLVHSDICGPISPISNSNKR 511



 Score =  155 bits (393), Expect = 2e-37
 Identities = 77/136 (56%), Positives = 94/136 (69%), Gaps = 1/136 (0%)
 Frame = +2

Query: 863  RTRRPPVWWNDYDTGNR-ALFEEMSLAVFSTADPTTFEEAVQSSVWQQAMDSEIQAIERN 1039
            R RR P W +DY  G   +  EE ++ + +  DP T+ EA +   W+ AM  EI +IE+N
Sbjct: 785  RFRRAPGWMSDYTPGEGLSEEEEEAMMMITEEDPVTYNEAAKEKKWRDAMAKEIDSIEKN 844

Query: 1040 NTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVFAPVAR 1219
             TW+L  LP    +IGVKW++KTKLNE G VEK+KARLVAKGYAQ+YGIDY EVFAPVAR
Sbjct: 845  GTWRLTTLPSGVKAIGVKWIFKTKLNEHGNVEKYKARLVAKGYAQQYGIDYTEVFAPVAR 904

Query: 1220 WDTIRAILAVAALRGW 1267
             DTIR ILA AA   W
Sbjct: 905  LDTIRLILATAAQNKW 920


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  121 bits (304), Expect(2) = 7e-54
 Identities = 53/109 (48%), Positives = 80/109 (73%)
 Frame = +3

Query: 15  EENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIG 194
           E N  +   +WFLDS CSNHM G K+WF + +  F++ VK GN  K+AV G+G+V+L+  
Sbjct: 289 ELNNSKMEEVWFLDSGCSNHMSGNKQWFTDLNEQFRQSVKLGNNSKMAVMGKGNVRLQAN 348

Query: 195 GITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           G+TQV T+V+Y+P+LKNNL+SIGQLQEKG + ++  +  C+++H ++ L
Sbjct: 349 GVTQVFTDVYYIPELKNNLLSIGQLQEKG-VTILIRNGMCQIYHPRKGL 396



 Score =  119 bits (299), Expect(2) = 7e-54
 Identities = 53/88 (60%), Positives = 63/88 (71%)
 Frame = +1

Query: 373 VQSDISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMES 552
           V  D +HLWHCR+GHLS KGL+ L  + MV+G P    SSK+C DC +GKQHRES P +S
Sbjct: 425 VSEDNTHLWHCRYGHLSFKGLRSLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRESIPKKS 484

Query: 553 TWRVTKVLELIHSDICGPITPASKSNKR 636
            WR +  L+LIHSDICGPI P S S KR
Sbjct: 485 MWRASHRLQLIHSDICGPIKPLSNSRKR 512



 Score =  177 bits (449), Expect = 8e-45
 Identities = 87/146 (59%), Positives = 110/146 (75%), Gaps = 3/146 (2%)
 Frame = +2

Query: 839  KKRVDENKRTRRPPVWWNDYDTGNRALFEEMS--LAVF-STADPTTFEEAVQSSVWQQAM 1009
            ++ + E  RTR  P+W  DY +G     EE +  + +F S  DPTTFEEA +S+ W+ AM
Sbjct: 762  EEEILEEGRTRLQPIWMQDYVSGEGLSEEEETNNIVMFTSVTDPTTFEEAFKSAKWKAAM 821

Query: 1010 DSEIQAIERNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGID 1189
            D EI+AIERN+TW+L  LP    +IGVKW++KTKLNE G+VEK KARLVAKGYAQ+YGID
Sbjct: 822  DQEIEAIERNHTWELTILPAGAKTIGVKWIFKTKLNENGEVEKCKARLVAKGYAQQYGID 881

Query: 1190 YNEVFAPVARWDTIRAILAVAALRGW 1267
            Y EVFAPVARWDTIR ++A+AA +GW
Sbjct: 882  YTEVFAPVARWDTIRMVIALAAQKGW 907


>gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 560

 Score =  126 bits (317), Expect(2) = 7e-54
 Identities = 58/107 (54%), Positives = 79/107 (73%)
 Frame = +3

Query: 21  NGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIGGI 200
           N  ++   WFLDS CSNHMCG K  F N +  F++ VK GN  K++V G+G+V+LK+ G 
Sbjct: 260 NETQREDAWFLDSGCSNHMCGDKALFYNLNEDFRQIVKLGNNSKMSVLGKGNVRLKVNGF 319

Query: 201 TQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           T VVT VFYVP+LKNNL+SIGQLQEKG L ++ ++ SCK++H ++ L
Sbjct: 320 THVVTEVFYVPELKNNLLSIGQLQEKG-LSILIQNGSCKIYHPEKGL 365



 Score =  114 bits (286), Expect(2) = 7e-54
 Identities = 48/85 (56%), Positives = 61/85 (71%)
 Frame = +1

Query: 382 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 561
           +I+HLWHCR+GHLS KGL+ L  K MV G P L   + +C  C IGKQHR+  P ++ WR
Sbjct: 397 EIAHLWHCRYGHLSHKGLRTLQYKKMVHGLPPLKSPTDVCTVCMIGKQHRDPIPKKANWR 456

Query: 562 VTKVLELIHSDICGPITPASKSNKR 636
            T+ L+LIH+DICGPI+P S S KR
Sbjct: 457 ATQKLQLIHADICGPISPTSNSKKR 481


>gb|PNX90684.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 372

 Score =  127 bits (318), Expect(2) = 9e-54
 Identities = 60/108 (55%), Positives = 79/108 (73%)
 Frame = +3

Query: 18  ENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIGG 197
           E+ E+   LWFLDS CSNHM G K+WF + D  +++ VK GN  K+AV GRG+VKL + G
Sbjct: 150 EHEEKSVELWFLDSGCSNHMTGNKKWFTDIDEQYQQSVKLGNNFKMAVVGRGNVKLHVNG 209

Query: 198 ITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           I QV+TNV+YVP+LKNNLISIGQL EKG + V+ ++  C+ +H K  L
Sbjct: 210 IMQVITNVYYVPELKNNLISIGQLIEKG-VSVLIQNGECRCYHSKEGL 256



 Score =  114 bits (284), Expect(2) = 9e-54
 Identities = 49/85 (57%), Positives = 61/85 (71%)
 Frame = +1

Query: 382 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 561
           D +HLWHCR+GHL+  GLK L  K MV G P +   SK+C+DC +GKQ R+  P +S WR
Sbjct: 288 DETHLWHCRYGHLNYNGLKTLQSKKMVTGLPEIRTPSKLCNDCVMGKQQRKPIPKKSLWR 347

Query: 562 VTKVLELIHSDICGPITPASKSNKR 636
            T  L+LIHSDICGPITP++ S KR
Sbjct: 348 ATHKLQLIHSDICGPITPSTSSGKR 372


>gb|KYP40819.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 582

 Score =  124 bits (312), Expect(2) = 2e-53
 Identities = 57/109 (52%), Positives = 79/109 (72%)
 Frame = +3

Query: 15  EENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIG 194
           E + E     WFLDS CS HMCG K WF + D  F+E VK G+G  L+V GRG+VKL + 
Sbjct: 281 EGSKENDQECWFLDSGCSTHMCGVKRWFIDLDEQFREVVKLGDGRTLSVMGRGNVKLCVE 340

Query: 195 GITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           G  Q++T V+Y+P+L NNL+SIGQLQ+K  LK+IF+D+ C+V+H+++ L
Sbjct: 341 GRIQIITGVYYIPNLMNNLLSIGQLQQK-KLKIIFDDDKCRVYHKEKGL 388



 Score =  115 bits (287), Expect(2) = 2e-53
 Identities = 50/85 (58%), Positives = 63/85 (74%)
 Frame = +1

Query: 382 DISHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWR 561
           D + +WH R+GHLS  GLK+L QK MV+G P L E  K+C +C +GKQHR++   +STWR
Sbjct: 420 DSTEMWHKRYGHLSYGGLKLLNQKAMVKGLPELKEMDKVCPECAVGKQHRDAISKQSTWR 479

Query: 562 VTKVLELIHSDICGPITPASKSNKR 636
            T+ LELIHSDICGP TP S SN+R
Sbjct: 480 ATRRLELIHSDICGPSTPTSNSNRR 504


>gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]
          Length = 1328

 Score =  126 bits (316), Expect(2) = 3e-53
 Identities = 59/110 (53%), Positives = 82/110 (74%)
 Frame = +3

Query: 12  QEENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKI 191
           Q+     K  +W+LDS CSNHM G KEW  +FD +F+E VK G+  K+ V G+G +KL I
Sbjct: 287 QDATIHAKTEVWYLDSGCSNHMIGNKEWLFDFDDSFRESVKLGDDSKMHVMGKGKLKLYI 346

Query: 192 GGITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRKRDL 341
           GGITQV++ V+Y+P LKNNL+SIGQLQ+K +L ++F+++ CKVFH +R L
Sbjct: 347 GGITQVISEVYYLPGLKNNLLSIGQLQQK-NLTIVFKNDICKVFHEERGL 395



 Score =  112 bits (281), Expect(2) = 3e-53
 Identities = 51/83 (61%), Positives = 57/83 (68%)
 Frame = +1

Query: 388 SHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWRVT 567
           S LWH R+GHLS KGL  LV+K MV G P L E+S +C DC  GKQHRE  P +  WR T
Sbjct: 427 SQLWHKRYGHLSYKGLNTLVKKEMVRGLPALKEASDVCSDCLFGKQHREVIPKKVNWRAT 486

Query: 568 KVLELIHSDICGPITPASKSNKR 636
             LELIHSDICGPI PAS S  +
Sbjct: 487 HKLELIHSDICGPINPASNSGNK 509



 Score =  170 bits (431), Expect = 2e-42
 Identities = 83/138 (60%), Positives = 106/138 (76%), Gaps = 3/138 (2%)
 Frame = +2

Query: 863  RTRRPPVWWNDYDTGNRALFEEM--SLAVF-STADPTTFEEAVQSSVWQQAMDSEIQAIE 1033
            R  + P + +DY TG     EE   +LAVF +  DPTTF+EAV+  VW++AMD EI+ IE
Sbjct: 782  RVIKRPGYLSDYVTGQELEEEEQLHNLAVFCNNTDPTTFDEAVKHEVWRKAMDQEIECIE 841

Query: 1034 RNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQKYGIDYNEVFAPV 1213
             N+TW+L +LP  +  IGVKW+YKTKLNE+GKVEK+KARLVAKGY+Q+YGID+ EVFAPV
Sbjct: 842  SNDTWELTELPSGSKKIGVKWIYKTKLNEKGKVEKYKARLVAKGYSQQYGIDFKEVFAPV 901

Query: 1214 ARWDTIRAILAVAALRGW 1267
            ARWDTIR +L++AA   W
Sbjct: 902  ARWDTIRTVLSIAASESW 919


>gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 886

 Score =  122 bits (305), Expect(3) = 4e-53
 Identities = 55/105 (52%), Positives = 79/105 (75%)
 Frame = +3

Query: 18  ENGERKNGLWFLDS*CSNHMCGTKEWFCNFDGTFKEFVKPGNGMKLAVEGRGSVKLKIGG 197
           +    K  +W+LDS CSNHM G KEW  +FD +F+E VK G+  ++AV G+G++KL I G
Sbjct: 286 DESNNKKVVWYLDSGCSNHMVGNKEWLFDFDDSFRESVKLGDDSRMAVMGKGNLKLNING 345

Query: 198 ITQVVTNVFYVPDLKNNLISIGQLQEKGHLKVIFEDNSCKVFHRK 332
           + QV+T+V+++P LKNNL+SIGQLQ+K ++ +IFE + CKVFH K
Sbjct: 346 MVQVITDVYFLPGLKNNLLSIGQLQQK-NVTIIFEKDQCKVFHDK 389



 Score =  115 bits (287), Expect(3) = 4e-53
 Identities = 48/83 (57%), Positives = 61/83 (73%)
 Frame = +1

Query: 388 SHLWHCRFGHLSQKGLKILVQKNMVEGFPTLTESSKICDDCQIGKQHRESFPMESTWRVT 567
           SHLWHCR+ HLS KGL  LV+K+MV+G PTL E+ ++C DC  GKQ RE+ P  + WR +
Sbjct: 424 SHLWHCRYAHLSFKGLNTLVKKDMVKGLPTLQETDEVCSDCATGKQSREAIPKSNNWRAS 483

Query: 568 KVLELIHSDICGPITPASKSNKR 636
           + L+L+HSDICGPI PAS    R
Sbjct: 484 EKLQLVHSDICGPINPASNGGSR 506



 Score = 22.7 bits (47), Expect(3) = 4e-53
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 335 GLIITSIMTKNYMFRVTSPI 394
           GLIITS M+ N MF + + I
Sbjct: 391 GLIITSDMSANRMFIIQASI 410



 Score =  123 bits (309), Expect = 1e-26
 Identities = 59/108 (54%), Positives = 80/108 (74%), Gaps = 3/108 (2%)
 Frame = +2

Query: 863  RTRRPPVWWNDYDTG--NRALFEEMSLAVFST-ADPTTFEEAVQSSVWQQAMDSEIQAIE 1033
            R R+PP W  DY T   N    +  +LA+FS  +DP T++EA +  VW+ AMD EI +IE
Sbjct: 779  RIRKPPAWTQDYVTELENAENSDLQNLAIFSVQSDPITYDEAAKHKVWRDAMDQEILSIE 838

Query: 1034 RNNTWKLVDLPVNTCSIGVKWVYKTKLNEEGKVEKHKARLVAKGYAQK 1177
            +N+TW+L+DLP  +  IGVKW+YKTK NE+G+VEK+KARLVAKGY+Q+
Sbjct: 839  KNDTWELLDLPTGSKKIGVKWIYKTKFNEKGEVEKYKARLVAKGYSQQ 886