BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00010811
         (547 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX92765.1| ribonuclease H [Trifolium pratense]                     94   6e-30
dbj|GAU10400.1| hypothetical protein TSUD_423410, partial [Trifo...    95   5e-29
gb|PNX92714.1| ribonuclease H [Trifolium pratense]                     91   8e-29
dbj|GAU49954.1| hypothetical protein TSUD_180180 [Trifolium subt...    86   1e-28
dbj|GAU17063.1| hypothetical protein TSUD_105620 [Trifolium subt...    79   5e-28
dbj|GAU50297.1| hypothetical protein TSUD_288310 [Trifolium subt...    82   3e-26
gb|PNY06651.1| ribonuclease H [Trifolium pratense]                     81   4e-26
dbj|GAU50021.1| hypothetical protein TSUD_186220 [Trifolium subt...    80   5e-26
dbj|GAU47648.1| hypothetical protein TSUD_27720 [Trifolium subte...    80   8e-26
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    82   3e-25
gb|PNX92660.1| ribonuclease H [Trifolium pratense]                     78   5e-25
dbj|GAU20604.1| hypothetical protein TSUD_33400 [Trifolium subte...    69   4e-23
dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subt...    83   4e-23
dbj|GAU33259.1| hypothetical protein TSUD_333820 [Trifolium subt...    79   4e-23
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas...    78   3e-22
dbj|GAU50029.1| hypothetical protein TSUD_240220 [Trifolium subt...    80   4e-22
dbj|GAU28886.1| hypothetical protein TSUD_293380 [Trifolium subt...    72   2e-21
dbj|GAU40444.1| hypothetical protein TSUD_397630 [Trifolium subt...    77   3e-21
gb|PNY05589.1| ribonuclease H [Trifolium pratense]                     75   5e-21
gb|ABD32401.2| Ribonuclease H, partial [Medicago truncatula]           75   5e-21

>gb|PNX92765.1| ribonuclease H [Trifolium pratense]
          Length = 1310

 Score = 93.6 bits (231), Expect(2) = 6e-30
 Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
 Frame = -2

Query: 534  WLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLI-SASGASSR 358
            WL+  +   +   F+AG+WW WRARN   + NE I +Y++ I+V  LA+LI S       
Sbjct: 1076 WLKIHSYGPAANLFLAGLWWNWRARNIVCVGNESIHMYQILIEVRKLASLILSCFSIVPS 1135

Query: 357  APSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQ 235
            A   PRWV+WH S++   VLNVDGS +G+ GR+GFG LIR+
Sbjct: 1136 ALKPPRWVTWHPSRDVGFVLNVDGSCLGDSGRAGFGGLIRE 1176



 Score = 65.1 bits (157), Expect(2) = 6e-30
 Identities = 36/75 (48%), Positives = 49/75 (65%)
 Frame = -3

Query: 227  DGSRIVGFSGNLGVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNH 48
            DGS I+GFSG LG+S+  +AE M +  GL +A E G R +  YS+S  T ++ IS   N 
Sbjct: 1178 DGSWIIGFSGFLGISNNTFAELMAVFHGLKIARERGYRRIHCYSDS-QTVVDAISKDLNS 1236

Query: 47   FHLHAVLIQSIKDVL 3
            FH +A +I SIKD+L
Sbjct: 1237 FHRYAAVIASIKDLL 1251


>dbj|GAU10400.1| hypothetical protein TSUD_423410, partial [Trifolium subterraneum]
          Length = 284

 Score = 94.7 bits (234), Expect(2) = 5e-29
 Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
 Frame = -2

Query: 534 WLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISASGASSRA 355
           WLR+ +   +  +F+AG+WW WRARN   + N  I  +K+  +V  L  LI     +   
Sbjct: 50  WLRNNSIGLNAPTFLAGLWWNWRARNIFCVGNASIHSFKVVAEVSKLVALIVFCFPARVH 109

Query: 354 PSVPR-WVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQ 235
              PR W+SWH  K DC VLNVDGS +G+PGR+GFG L R+
Sbjct: 110 TDTPRRWISWHPCKTDCVVLNVDGSCLGDPGRAGFGGLFRK 150



 Score = 60.8 bits (146), Expect(2) = 5e-29
 Identities = 34/75 (45%), Positives = 47/75 (62%)
 Frame = -3

Query: 227 DGSRIVGFSGNLGVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNH 48
           DG  I GFSG LGV++ + AE M +  GL +A E G   L  YS+S  T L+L+S   N 
Sbjct: 152 DGEWIRGFSGYLGVTNIMLAELMAVYHGLKIAREAGYNRLFCYSDS-KTVLDLLSKERNS 210

Query: 47  FHLHAVLIQSIKDVL 3
           FH +A +I +I+D+L
Sbjct: 211 FHCYAAIIANIQDLL 225


>gb|PNX92714.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score = 90.9 bits (224), Expect(2) = 8e-29
 Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
 Frame = -2

Query: 540  IDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISAS-GAS 364
            I W+++G    S   F AG+WW WR RN+    NE IP Y+L ++   ++ L S+    +
Sbjct: 1122 ISWIKEGTSGSSLNIFAAGVWWAWRNRNSMCFTNEHIPQYRLIMEAKLMSQLFSSCFSTN 1181

Query: 363  SRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
            S    V  +V W++S   C +LNVDGS +G P R+GFG ++R S
Sbjct: 1182 SSGTLVDHFVKWNASNMTCIILNVDGSCLGTPCRAGFGGVLRNS 1225



 Score = 63.9 bits (154), Expect(2) = 8e-29
 Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
 Frame = -3

Query: 230  SDGSRIVGFSGNL-GVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPS 54
            S+G+ I GFSG + G +D LYAE + I  GL LA ++G   +  YS+S L +L+LI N +
Sbjct: 1225 SNGAWISGFSGFIAGSTDILYAELLAIYHGLSLAKDLGHDHVACYSDS-LNSLSLIQNST 1283

Query: 53   NHFHLHAVLIQSIKDVL 3
              FH++AVLIQ+IKD+L
Sbjct: 1284 PRFHIYAVLIQNIKDLL 1300


>dbj|GAU49954.1| hypothetical protein TSUD_180180 [Trifolium subterraneum]
          Length = 968

 Score = 85.5 bits (210), Expect(2) = 1e-28
 Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
 Frame = -2

Query: 543  VIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLI-SASGA 367
            V DWL+ GA       F AG+WW WR RN   L NE   L +L  ++ S+     +    
Sbjct: 731  VYDWLKMGATGTQSLIFSAGVWWSWRHRNLMSLNNETWTLSRLSFNIRSMVETFKNCCTP 790

Query: 366  SSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
             S   SV R++ W ++   CT+LNVDGS +G+P R+GFG +IR +
Sbjct: 791  VSNVGSVDRFIKWKNNNFSCTILNVDGSCLGSPARAGFGGIIRNT 835



 Score = 68.6 bits (166), Expect(2) = 1e-28
 Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = -3

Query: 224  GSRIVGFSGNL-GVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNH 48
            G  + GFSG + G SD LYAE   I +GLLLA  MGI  LV YS+S L  +NLI  P   
Sbjct: 837  GYYLAGFSGYIQGSSDILYAELYAIYKGLLLAKNMGIDELVCYSDS-LHCINLIKGPQVK 895

Query: 47   FHLHAVLIQSIKDVL 3
            +H+HAVLIQ IK+++
Sbjct: 896  YHIHAVLIQDIKELI 910


>dbj|GAU17063.1| hypothetical protein TSUD_105620 [Trifolium subterraneum]
          Length = 440

 Score = 79.3 bits (194), Expect(2) = 5e-28
 Identities = 41/101 (40%), Positives = 55/101 (54%)
 Frame = -2

Query: 534 WLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISASGASSRA 355
           WLR G  + S   F+A +WW WRARN   LANE +  + +   +   A L+    +  ++
Sbjct: 208 WLRKGCDSPSMFMFLAALWWIWRARNKLCLANELVSPFTISRCIEDYALLVKKCYSQQKS 267

Query: 354 PSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
               R V W++      +LNVDGSSIGNP   GFG LIR S
Sbjct: 268 TLANRLVRWNAHDGTDMILNVDGSSIGNPEIYGFGGLIRNS 308



 Score = 72.8 bits (177), Expect(2) = 5e-28
 Identities = 35/76 (46%), Positives = 54/76 (71%)
 Frame = -3

Query: 230 SDGSRIVGFSGNLGVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSN 51
           S G+ I GF+GN+G S+ L+AE + +  GL+LAW+M I+ L+ YS+S  T + LI +P N
Sbjct: 308 SHGAWIRGFAGNIGFSNILHAELLAVYHGLVLAWDMDIKDLICYSDS-KTAIKLIGDPIN 366

Query: 50  HFHLHAVLIQSIKDVL 3
            +H  A ++Q+IKD+L
Sbjct: 367 EWHHFAAILQNIKDIL 382


>dbj|GAU50297.1| hypothetical protein TSUD_288310 [Trifolium subterraneum]
          Length = 545

 Score = 81.6 bits (200), Expect(2) = 3e-26
 Identities = 43/102 (42%), Positives = 55/102 (53%)
 Frame = -2

Query: 537 DWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISASGASSR 358
           DWLR+     S   F+A +WW W ARN   + NE I  + L+ +  +LA L+        
Sbjct: 312 DWLRNSIDGPSSFLFMAAVWWIWCARNQLCMDNEAISYFTLRTNTENLAQLLRMCFIKQN 371

Query: 357 APSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
             S    V W++      +LNVDGSSIGNPG SGFG LIR S
Sbjct: 372 ISSTATMVRWNAHGGIGMILNVDGSSIGNPGISGFGGLIRNS 413



 Score = 64.7 bits (156), Expect(2) = 3e-26
 Identities = 35/76 (46%), Positives = 50/76 (65%)
 Frame = -3

Query: 230 SDGSRIVGFSGNLGVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSN 51
           SDG+ + GF+GN+G  + L AE + I  GL+LAWE+ I+ L  YS+S  T L LI +  N
Sbjct: 413 SDGAWVHGFAGNIGHLNILQAELLAIYHGLVLAWELDIKDLCCYSDS-KTALKLIYDHVN 471

Query: 50  HFHLHAVLIQSIKDVL 3
            +H +A +I +IKD L
Sbjct: 472 EWHQYAAIIYNIKDFL 487


>gb|PNY06651.1| ribonuclease H [Trifolium pratense]
          Length = 468

 Score = 80.9 bits (198), Expect(2) = 4e-26
 Identities = 42/104 (40%), Positives = 61/104 (58%), Gaps = 2/104 (1%)
 Frame = -2

Query: 537 DWLRDGA-RTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLI-SASGAS 364
           DW++ GA  THS  S  AG+WW WR RN   L NE   L +L  ++ S+     +     
Sbjct: 233 DWIKMGAIGTHSLISS-AGVWWSWRHRNLMSLNNETWSLCRLSFNIRSMVETFKNCFTLI 291

Query: 363 SRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
           S    V +++ W+++   CT+LNVDGS +G+P RSGFG +IR +
Sbjct: 292 SNGGLVVKFIKWNNNNSSCTILNVDGSCLGSPTRSGFGGIIRNT 335



 Score = 65.1 bits (157), Expect(2) = 4e-26
 Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
 Frame = -3

Query: 215 IVGFSGNL-GVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNHFHL 39
           + GFSG + G  D LYAE   I +G+LLA   GI  LV YS+S L  +NLI  P   FH+
Sbjct: 340 LAGFSGYIQGSYDILYAELYXIYKGJLLAINXGIDELVCYSDS-LHCINLIKGPQVKFHI 398

Query: 38  HAVLIQSIKDVL 3
           HAVLIQ IKD++
Sbjct: 399 HAVLIQDIKDLI 410


>dbj|GAU50021.1| hypothetical protein TSUD_186220 [Trifolium subterraneum]
          Length = 259

 Score = 80.1 bits (196), Expect(2) = 5e-26
 Identities = 39/106 (36%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
 Frame = -2

Query: 543 VIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISAS--G 370
           V DWL+ GA +     F+AG+WW WR RN   L NE   L +L   + ++          
Sbjct: 48  VYDWLKLGATSSKALIFLAGVWWSWRHRNLMFLNNETWSLSRLSFYIRAMVETFRNCFFS 107

Query: 369 ASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
           A+S    V R++ W+ +   C +LNVDGS + +P RSG+G +IR +
Sbjct: 108 AASNRRLVDRYIKWNHNNYSCNILNVDGSCLDSPVRSGYGGIIRNT 153



 Score = 65.5 bits (158), Expect(2) = 5e-26
 Identities = 40/72 (55%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
 Frame = -3

Query: 215 IVGFSGNL-GVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNHFHL 39
           + GFSG + G SD L AE   I RGLLLA EM I  LV YS+S L  +NLI +P   +H+
Sbjct: 158 LAGFSGFIQGSSDILLAELYAIYRGLLLAKEMSIDELVCYSDS-LHCVNLIKDPLAKYHI 216

Query: 38  HAVLIQSIKDVL 3
           HAVLIQ IK++L
Sbjct: 217 HAVLIQDIKELL 228


>dbj|GAU47648.1| hypothetical protein TSUD_27720 [Trifolium subterraneum]
          Length = 521

 Score = 79.7 bits (195), Expect(2) = 8e-26
 Identities = 43/102 (42%), Positives = 56/102 (54%)
 Frame = -2

Query: 534 WLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISASGASSRA 355
           WL +G  + S   F A IWW W  RNN  + NE I    L++ +   A+L+ A   +   
Sbjct: 289 WLWNGLDSPSKLLFTAAIWWIWCTRNNLCMNNESISQVSLRMRIEDYAHLLRACLFNQIT 348

Query: 354 PSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQSK 229
            S  + V W++      +LNVDGSSIGNPG SGFG LI  SK
Sbjct: 349 MSNTKLVKWNALGSPDMILNVDGSSIGNPGVSGFGGLIHNSK 390



 Score = 65.1 bits (157), Expect(2) = 8e-26
 Identities = 33/76 (43%), Positives = 51/76 (67%)
 Frame = -3

Query: 230 SDGSRIVGFSGNLGVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSN 51
           S G+   GF GN+G S+ L+AE M +  GLLLAW++ I+ L  YS+S  T + LI+ P +
Sbjct: 389 SKGAWAHGFVGNIGFSNILHAELMALYHGLLLAWQLNIKELWCYSDSE-TAIKLITEPVD 447

Query: 50  HFHLHAVLIQSIKDVL 3
            +H +A ++ +IKD+L
Sbjct: 448 EWHHYAAILLNIKDIL 463


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score = 82.0 bits (201), Expect(2) = 3e-25
 Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
 Frame = -2

Query: 543  VIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISASGAS 364
            V DW+R+ +      +F+AG+WW WR RN   L+NE  PL ++   +    N I ++   
Sbjct: 1058 VQDWIRNFSSGSRAITFLAGLWWSWRHRNLMCLSNETWPLTRISFRINDSINAIRSAFVK 1117

Query: 363  SRA--PSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
            S    P   R V W+     C +LNVDGS +G P R+GFG + R +
Sbjct: 1118 SNVIQPDSARMVKWNQGNHQCHILNVDGSCLGTPIRAGFGGIFRNN 1163



 Score = 60.8 bits (146), Expect(2) = 3e-25
 Identities = 35/75 (46%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
 Frame = -3

Query: 224  GSRIVGFSGNLGVS-DALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNH 48
            G  + G+SG +  S D L AE   + +GL++A EMGI  L  YS+S+LT +NLI+  ++ 
Sbjct: 1165 GGYLSGYSGFISESTDILLAELTALHQGLIMAAEMGIEELACYSDSLLT-INLITRTTSK 1223

Query: 47   FHLHAVLIQSIKDVL 3
            +H +AVLIQ IKD+L
Sbjct: 1224 YHTYAVLIQDIKDLL 1238


>gb|PNX92660.1| ribonuclease H [Trifolium pratense]
          Length = 308

 Score = 78.2 bits (191), Expect(2) = 5e-25
 Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = -2

Query: 543 VIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLIS-ASGA 367
           V DWL+ GA   +   F AG+WW WR RN   L NE   L ++   + ++    S     
Sbjct: 71  VYDWLKLGATCSNDLLFSAGLWWSWRHRNLMCLNNETWSLSRISFHIRAMVETFSNCFSP 130

Query: 366 SSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLI 241
           +S   S+ R++ W+     CT+LNVDGS   +P RSGFG +I
Sbjct: 131 ASNEGSIDRYIKWNHDNYPCTILNVDGSCPDSPVRSGFGGII 172



 Score = 63.9 bits (154), Expect(2) = 5e-25
 Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
 Frame = -3

Query: 212 VGFSGNL-GVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNHFHLH 36
           VGFSG + G SD L AE   I +GLLLA +M I  L+ YS+S L ++NLI  P   FH H
Sbjct: 181 VGFSGFIQGSSDILLAELYAIYKGLLLAKDMNIDELICYSDS-LHSVNLIRGPHAKFHTH 239

Query: 35  AVLIQSIKDVL 3
           AVLIQ IK++L
Sbjct: 240 AVLIQDIKELL 250


>dbj|GAU20604.1| hypothetical protein TSUD_33400 [Trifolium subterraneum]
          Length = 1174

 Score = 69.3 bits (168), Expect(2) = 4e-23
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
 Frame = -2

Query: 543  VIDWLRDGA-RTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLAN-LISASG 370
            V DWL+    R H F  F+AG+WW WR RN   L+NE     ++  ++ S+ + L +   
Sbjct: 937  VHDWLKSAYFRPHRFV-FMAGVWWLWRHRNLMCLSNETWSFVRISCNIYSMGDTLKTCFP 995

Query: 369  ASSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
            +SS   +  R V W+S+     +LN+DGS  G P R GFG +IR +
Sbjct: 996  SSSPEETSNRTVKWNSTDFTGFILNMDGSCSGTPIRCGFGCIIRNN 1041



 Score = 66.2 bits (160), Expect(2) = 4e-23
 Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
 Frame = -3

Query: 224  GSRIVGFSGNL-GVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNH 48
            GS I G SG++ G SD L AE  GI  GL LA  +GI  L+ Y++S+L+  NLI  P +H
Sbjct: 1043 GSYIAGASGHIIGSSDILLAELSGIFHGLKLASSLGITDLICYTDSLLSC-NLIQGPYSH 1101

Query: 47   FHLHAVLIQSIKDVL 3
            +H++ VLIQ+IKD +
Sbjct: 1102 YHIYGVLIQNIKDYM 1116


>dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subterraneum]
          Length = 1075

 Score = 82.8 bits (203), Expect(2) = 4e-23
 Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
 Frame = -2

Query: 537  DWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISASGAS-S 361
            +WL+ G+      +F A +WW WR RN   L NE   L +L  ++ S+ ++ ++S +S S
Sbjct: 840  EWLKVGSTGSQAYTFSASVWWAWRHRNLMCLNNESWSLNRLSFNIHSMVDIFTSSFSSNS 899

Query: 360  RAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQSK*RIEDRGFF 202
               SV R + W++    C +LNVDGS +G+P R+G+G +IR       D GF+
Sbjct: 900  DGTSVSRLIKWNNDNFSCVILNVDGSCLGSPVRAGYGGIIR------NDSGFY 946



 Score = 52.8 bits (125), Expect(2) = 4e-23
 Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = -3

Query: 224  GSRIVGFSGNLGVS-DALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNH 48
            G  + GFSG +  S D L AE   I +GL LA ++ I  LV YS+S+L  +NLI  P   
Sbjct: 944  GFYLSGFSGFIRESSDILLAELYAIYQGLTLAKDLVIDELVCYSDSLLC-INLIKGPIVK 1002

Query: 47   FHLHAVLIQSIKDVL 3
            +H++AVLIQ IK+++
Sbjct: 1003 YHVYAVLIQDIKELI 1017


>dbj|GAU33259.1| hypothetical protein TSUD_333820 [Trifolium subterraneum]
          Length = 284

 Score = 79.0 bits (193), Expect(2) = 4e-23
 Identities = 42/103 (40%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
 Frame = -2

Query: 534 WLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISASGASSRA 355
           WLR+ +   +  +F+AG+WW WRARN   + N  I  +K+  +V  L  LI +       
Sbjct: 56  WLRNNSIGLNAPTFLAGLWWNWRARNICCVGNASIHSFKVVAEVSKLVALIVSC------ 109

Query: 354 PSVPRWVSWHSS---KEDCTVLNVDGSSIGNPGRSGFGSLIRQ 235
              P WV   +    K DC VLNVDGS +G+PGR+GFG L R+
Sbjct: 110 --FPAWVRTDTPRVCKTDCVVLNVDGSCLGDPGRAGFGGLFRK 150



 Score = 56.6 bits (135), Expect(2) = 4e-23
 Identities = 33/75 (44%), Positives = 45/75 (60%)
 Frame = -3

Query: 227 DGSRIVGFSGNLGVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNH 48
           DG  I G SG LGV++   AE M +  GL +A E G   L  YS+S  T L+L+S   N 
Sbjct: 152 DGEWIRGSSGYLGVTNITLAELMAVYHGLKIAREAGYNRLFCYSDS-KTVLDLLSKERNS 210

Query: 47  FHLHAVLIQSIKDVL 3
           FH +A +I +I+D+L
Sbjct: 211 FHCYAAIIANIQDLL 225


>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 869

 Score = 77.8 bits (190), Expect(2) = 3e-22
 Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
 Frame = -2

Query: 534 WLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISASGASSRA 355
           W + G        F AG+WW WR+RN   ++ E + L +L  ++    + I++       
Sbjct: 635 WCKSGLIGSKAILFAAGLWWIWRSRNARCMSEESMLLQRLAANITYFVDDINSCFFQPLP 694

Query: 354 PSVP-RWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
             V  R+V W++S  +CT+LNVDGS IG+P R+GFG LIR S
Sbjct: 695 VMVSDRYVKWNNSNFNCTILNVDGSCIGSPIRAGFGGLIRNS 736



 Score = 55.1 bits (131), Expect(2) = 3e-22
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = -3

Query: 230 SDGSRIVGFSGNL-GVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPS 54
           S G  + GF G L   SD L AE   I  G+  A +MGI  +  YS+S+L+ +NLI+  S
Sbjct: 736 SVGFYLSGFLGFLPSSSDILLAELTAIYDGINTAIDMGITDMAVYSDSLLS-INLITTTS 794

Query: 53  NHFHLHAVLIQSIKDVL 3
           + FH+HA LIQ I+D L
Sbjct: 795 SKFHIHAALIQDIRDKL 811


>dbj|GAU50029.1| hypothetical protein TSUD_240220 [Trifolium subterraneum]
          Length = 357

 Score = 79.7 bits (195), Expect(2) = 4e-22
 Identities = 42/101 (41%), Positives = 55/101 (54%)
 Frame = -2

Query: 534 WLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISASGASSRA 355
           WLR    + +   F+AGIWW WRARN   L +E I    LK+ ++  A L+     ++  
Sbjct: 184 WLRYDLSSSALLLFIAGIWWIWRARNALCLDSEMISFCSLKLHIMDYALLLKNCYFNTHE 243

Query: 354 PSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
               R V W+       +LNVDGS IGNPG SGFG LIR +
Sbjct: 244 TPTTRLVKWNVLGGTGMILNVDGSIIGNPGISGFGGLIRNA 284



 Score = 52.8 bits (125), Expect(2) = 4e-22
 Identities = 25/47 (53%), Positives = 35/47 (74%)
 Frame = -3

Query: 230 SDGSRIVGFSGNLGVSDALYAEHMGILRGLLLAWEMGIRTLVYYSES 90
           +DG+ + GF GNL V++ L+AE M I +GLLLAWE+ I+ L  YS+S
Sbjct: 284 ADGAWVHGFFGNLAVTNILHAELMAIYKGLLLAWELNIKDLWCYSDS 330


>dbj|GAU28886.1| hypothetical protein TSUD_293380 [Trifolium subterraneum]
          Length = 286

 Score = 72.0 bits (175), Expect(2) = 2e-21
 Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
 Frame = -2

Query: 537 DWLRDGAR-THSFA-SFVAGIWWQWRARNNHILANEEIPLYKLKIDVISL-ANLISASGA 367
           +WL+ G+  + +FA SF AG+WW WR RN   L NE   + +L  ++ S+ A + S   +
Sbjct: 49  EWLKFGSTGSQAFAFSFSAGVWWAWRHRNLMCLQNETWSINRLSFNIQSMIATITSCFSS 108

Query: 366 SSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIR 238
            S   S    + W+++     +LNVDGS +G+P R+GFG +IR
Sbjct: 109 RSTTTSEEIHIKWNNNNFPGVILNVDGSCLGSPVRAGFGGVIR 151



 Score = 57.8 bits (138), Expect(2) = 2e-21
 Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = -3

Query: 224 GSRIVGFSGNL-GVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNH 48
           G  + GFSG + G SD L AE   I +GL LA  M I  LV YS+S L  +NLI  PS  
Sbjct: 155 GFYLSGFSGFIQGSSDILLAELFAIYKGLTLAKNMAIDELVCYSDS-LHCINLIKGPSIK 213

Query: 47  FHLHAVLIQSIKDVL 3
           +H++ VLIQ IK+++
Sbjct: 214 YHVYVVLIQDIKELM 228


>dbj|GAU40444.1| hypothetical protein TSUD_397630 [Trifolium subterraneum]
          Length = 275

 Score = 77.4 bits (189), Expect(2) = 3e-21
 Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
 Frame = -2

Query: 537 DWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLISASGAS-S 361
           +W + G+      +F AG+WW WR RN   L N+   L +L  ++ S+ ++ ++S +S S
Sbjct: 40  EWRKVGSTGSQAYTFSAGVWWAWRHRNWMCLNNDSWSLNRLSFNIQSMVDIFTSSFSSNS 99

Query: 360 RAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQSK*RIEDRGFF 202
              +V R + W++    C +LNVDGS + +P R+G+G +IR       D GF+
Sbjct: 100 DGTAVSRLIKWNNDNFSCVILNVDGSCLDSPVRAGYGGIIR------NDSGFY 146



 Score = 52.0 bits (123), Expect(2) = 3e-21
 Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = -3

Query: 224 GSRIVGFSGNLGVS-DALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNH 48
           G  + GFSG +  S D L AE   I +GL LA ++ I  LV YS+S+L  +NLI  P   
Sbjct: 144 GFYLSGFSGFIRESSDILLAELYAIYQGLTLAKDLAIDELVCYSDSLLC-INLIKGPIVK 202

Query: 47  FHLHAVLIQSIKDVL 3
           +H++AVLIQ I +++
Sbjct: 203 YHVYAVLIQDINELI 217


>gb|PNY05589.1| ribonuclease H [Trifolium pratense]
          Length = 1360

 Score = 74.7 bits (182), Expect(2) = 5e-21
 Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
 Frame = -2

Query: 543  VIDWLRDGARTHSFASFVAGIWWQWRARNNHILANEEIPLYKLKIDVISLA-NLISASGA 367
            V  WL++G  + +  +F AG+WW WR RN   L +E     +L  ++ S+  NL +   +
Sbjct: 1123 VHSWLKNGCFSPNNFTFTAGVWWVWRHRNLMCLNDETWSTVRLSFNIRSMVENLKACFPS 1182

Query: 366  SSRAPSVPRWVSWHSSKEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
            SS   +  R V W+SS     +LN DGS IG+P R+GFG +IR +
Sbjct: 1183 SSNDDTSSRTVKWNSSNFPGYILNTDGSCIGSPTRAGFGCVIRNN 1227



 Score = 53.9 bits (128), Expect(2) = 5e-21
 Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = -3

Query: 224  GSRIVGFSGNL-GVSDALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPSNH 48
            G  I G SG++ G +D L AE   I  GL LA  +GI  L  Y++S+L+ +NLI      
Sbjct: 1229 GLYIAGASGHITGSTDILLAELSAIFHGLNLATSLGINELFCYTDSLLS-INLIQGHFPR 1287

Query: 47   FHLHAVLIQSIKDVL 3
            +H++AVLIQ+IK+++
Sbjct: 1288 YHVYAVLIQNIKEII 1302


>gb|ABD32401.2| Ribonuclease H, partial [Medicago truncatula]
          Length = 233

 Score = 74.7 bits (182), Expect(2) = 5e-21
 Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
 Frame = -2

Query: 495 FVAGIWWQWRARNNHILANEEIPLYKLKIDVISLANLI-SASGASSRAPSVPRWVSWHSS 319
           F+AG+WW WR RN   L NE + L++L  ++IS A+   SA       P   R V W++ 
Sbjct: 12  FLAGLWWVWRHRNLMCLNNETLSLFRLCNNIISAADAANSAFNGEENPPHSDRLVKWNNR 71

Query: 318 KEDCTVLNVDGSSIGNPGRSGFGSLIRQS 232
                +LNVDGS IG P R+G+G ++R S
Sbjct: 72  NHQDFILNVDGSCIGTPPRTGYGGVLRNS 100



 Score = 53.9 bits (128), Expect(2) = 5e-21
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
 Frame = -3

Query: 230 SDGSRIVGFSGNLGVS-DALYAEHMGILRGLLLAWEMGIRTLVYYSESVLTTLNLISNPS 54
           S G  I GFSG +  S D L AE   I +GL L  ++ +  ++ YS+S+L  +NLI+N +
Sbjct: 100 SAGLFISGFSGLIPNSADILLAELTAIHQGLKLVTDLNVNEIMCYSDSLLA-VNLIANDT 158

Query: 53  NHFHLHAVLIQSIKDVL 3
             +H++A LIQ+IKD+L
Sbjct: 159 PRYHIYAALIQNIKDLL 175