BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00009361
         (1538 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposo...   605   0.0  
gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...   631   0.0  
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   620   0.0  
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   620   0.0  
gb|KYP67571.1| Retrovirus-related Pol polyprotein from transposo...   587   0.0  
gb|KYP67562.1| Retrovirus-related Pol polyprotein from transposo...   587   0.0  
gb|KYP51570.1| Retrovirus-related Pol polyprotein from transposo...   581   0.0  
gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposo...   578   0.0  
gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposo...   576   0.0  
gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposo...   575   0.0  
gb|PNX93473.1| retrovirus-related Pol polyprotein from transposo...   589   0.0  
gb|PNX77046.1| retrovirus-related Pol polyprotein from transposo...   562   0.0  
gb|PNX84939.1| retrovirus-related Pol polyprotein from transposo...   558   0.0  
gb|PNY12955.1| retrovirus-related Pol polyprotein from transposo...   559   0.0  
gb|PNX78102.1| retrovirus-related Pol polyprotein from transposo...   557   0.0  
gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposo...   557   0.0  
gb|PNY08092.1| histone deacetylase [Trifolium pratense]               582   0.0  
gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]      583   0.0  
gb|PNX99662.1| retrovirus-related Pol polyprotein from transposo...   572   0.0  
gb|PNY18109.1| retrovirus-related Pol polyprotein from transposo...   577   0.0  

>gb|KYP50410.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  605 bits (1561), Expect = 0.0
 Identities = 291/461 (63%), Positives = 360/461 (78%)
 Frame = +3

Query: 156  MVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLP 335
            M TRAK GIV+PRL PTLL+T  EP+   QAL S  W AAM+ EY+ALL N TWTL +LP
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHIEPKNTKQALASDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 336  HGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXX 515
              K AIG KWVFRIKEN DGT+N+YKARLVAKGF+Q+ G DY+ETF+PV+KP        
Sbjct: 61   PNKTAIGCKWVFRIKENSDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120

Query: 516  XXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAW 695
                + W ++Q+D+NNAFL+GNL EEVYM+QP GFE   K LVCKL+KAIYGLKQAPRAW
Sbjct: 121  LALTHHWSIQQLDVNNAFLNGNLQEEVYMSQPPGFESSDKTLVCKLHKAIYGLKQAPRAW 180

Query: 696  YERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLITTLST 875
            +++L +TL QL F  SKCDPSL VY   +  +Y L+YVDDII+TG++SS LQ +I  L++
Sbjct: 181  FDKLKTTLFQLNFQISKCDPSLFVYSHDNNVIYILVYVDDIIITGNNSSTLQNIIAQLNS 240

Query: 876  TFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLS 1055
             F+LK    LD+FLGIEV     GSL LTQSKYIR++L R  ++ +  IS+P+ +  KLS
Sbjct: 241  AFSLKDLGRLDFFLGIEVKSNTDGSLTLTQSKYIRDLLNRTNMENSNPISSPMVSGCKLS 300

Query: 1056 KFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLK 1235
            + GS+ F D TLYRS+VGALQYATITRPEI ++VNK CQF++ PL+ HWSAVKRILRYLK
Sbjct: 301  RTGSEKFLDVTLYRSVVGALQYATITRPEISFSVNKVCQFMSNPLEQHWSAVKRILRYLK 360

Query: 1236 GTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIV 1415
            GT+  GL LQPA   SPL ++AYCDADWASD DDRRSTSGA I++GPNLISWWSKKQ +V
Sbjct: 361  GTMFLGLHLQPAPSNSPLSIRAYCDADWASDPDDRRSTSGASIFVGPNLISWWSKKQTVV 420

Query: 1416 AKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            A+SSAEAEYRSLAL T+E++W+Q+L +ELH++H  P++YCD
Sbjct: 421  ARSSAEAEYRSLALATAEVLWIQTLLSELHVSHHTPVVYCD 461


>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1429

 Score =  631 bits (1627), Expect = 0.0
 Identities = 304/465 (65%), Positives = 368/465 (79%)
 Frame = +3

Query: 144  NTHPMVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTL 323
            NTH M+TR+K G ++P L PT+ +TT EP TV QAL S  W  AMQ EY AL ANKTW+L
Sbjct: 888  NTHHMLTRSKTGHLKPPLFPTINLTTTEPTTVQQALSSIHWTEAMQQEYQALQANKTWSL 947

Query: 324  TTLPHGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXX 503
              LP  K+AIG KW+FRIKENPDGTIN+YKARLVAKGFNQ+ G DYS+T++PV+KP    
Sbjct: 948  VPLPPHKRAIGCKWIFRIKENPDGTINKYKARLVAKGFNQKYGQDYSDTYSPVVKPITVR 1007

Query: 504  XXXXXXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQA 683
                      W L Q+D+NNAFL+G L E+VYM QP GF QG   LVCKL+KAIYGLKQA
Sbjct: 1008 TVLTIALTSKWPLIQLDVNNAFLNGQLHEDVYMQQPQGFIQGESTLVCKLHKAIYGLKQA 1067

Query: 684  PRAWYERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLIT 863
            PRAWYE LT+TL+  GF +SKCDPSL++++K  CCL  LIYVDDII+TGSS++A+  ++ 
Sbjct: 1068 PRAWYESLTNTLISFGFQQSKCDPSLLIFNKHGCCLLILIYVDDIIITGSSNTAINLIVN 1127

Query: 864  TLSTTFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAK 1043
             L+ TF+LKQ   L+YFLGIE   T +G+L L+Q+KYIR++L RAG++  KGISTPLPA 
Sbjct: 1128 KLNATFSLKQLGTLEYFLGIECKLTPSGALHLSQAKYIRDILHRAGMEDCKGISTPLPAN 1187

Query: 1044 LKLSKFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRIL 1223
            LKLSK G+D F +PTLYRSIVGALQYATITRPE+GY+V+K CQF AQPL SHWSAVKRIL
Sbjct: 1188 LKLSKTGADPFDNPTLYRSIVGALQYATITRPELGYSVSKVCQFFAQPLVSHWSAVKRIL 1247

Query: 1224 RYLKGTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKK 1403
            RYLKG++D+GL L PA+  +PL + A+CDADWASDIDDRRSTSGACI+ GPNL+SWWSKK
Sbjct: 1248 RYLKGSIDHGLTLLPATTSAPLSINAFCDADWASDIDDRRSTSGACIFFGPNLVSWWSKK 1307

Query: 1404 QHIVAKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            Q +VAKSSAEAEYRSLA   SE++W+QSL  EL +    P+IYCD
Sbjct: 1308 QTLVAKSSAEAEYRSLAHAASEVLWLQSLLHELKVPIPPPVIYCD 1352


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  620 bits (1598), Expect = 0.0
 Identities = 300/490 (61%), Positives = 370/490 (75%)
 Frame = +3

Query: 69   SSTSTLXXXXXXXXXXXXXXXIHPHNTHPMVTRAKDGIVQPRLHPTLLMTTAEPQTVNQA 248
            +S STL               IHPHN HPM TRAKDGIV+PRL PTLL+T  EP+T  QA
Sbjct: 508  TSPSTLSIPTSSNLEPSSSPIIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQA 567

Query: 249  LKSAPWKAAMQHEYDALLANKTWTLTTLPHGKKAIGSKWVFRIKENPDGTINRYKARLVA 428
            L +  W AAMQ EY+ALL N TW+L  LP  + AIG KWVFR+KENP+G++ +YKARLVA
Sbjct: 568  LSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVA 627

Query: 429  KGFNQRLGCDYSETFAPVIKPXXXXXXXXXXXXYGWDLKQIDINNAFLHGNLAEEVYMNQ 608
            KGFNQ+ G DY ETF+PVIKP            + W ++Q+D+NNAFL+G L EEVYM Q
Sbjct: 628  KGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQ 687

Query: 609  PVGFEQGSKDLVCKLNKAIYGLKQAPRAWYERLTSTLLQLGFTKSKCDPSLMVYHKGSCC 788
            P GFE   K+LVCKL+KAIYGLKQAPRAW+++L STLLQL F  SKCDPSL +Y +G+  
Sbjct: 688  PPGFEASDKNLVCKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNV 747

Query: 789  LYALIYVDDIILTGSSSSALQQLITTLSTTFALKQFTALDYFLGIEVNRTNTGSLLLTQS 968
            +Y L+YVDDII+TG++SS L  L++ L + F+LK    LD+FLGIEV     GSL+LTQS
Sbjct: 748  IYILVYVDDIIITGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQS 807

Query: 969  KYIREVLQRAGIDQAKGISTPLPAKLKLSKFGSDYFADPTLYRSIVGALQYATITRPEIG 1148
            KYIR++L R  ++ +K IS+P+ +  KLSK GS+ F D +LYRS+VGALQYATITRPEI 
Sbjct: 808  KYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEIS 867

Query: 1149 YAVNKCCQFLAQPLDSHWSAVKRILRYLKGTVDYGLLLQPASPKSPLPLQAYCDADWASD 1328
            ++VNK CQF++ PL  HW+AVKRILRYLKGT  +GL LQPAS  S L + AYCDADWASD
Sbjct: 868  FSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASD 927

Query: 1329 IDDRRSTSGACIYLGPNLISWWSKKQHIVAKSSAEAEYRSLALTTSELVWVQSL*TELHI 1508
             DDRRSTSGA I+LGPNL+SWWSKKQ +VA+SS EAEYRSLAL T+E+ W+Q+L +EL +
Sbjct: 928  PDDRRSTSGASIFLGPNLVSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKV 987

Query: 1509 AHTAPIIYCD 1538
             H+ PII+CD
Sbjct: 988  THSTPIIFCD 997


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  620 bits (1598), Expect = 0.0
 Identities = 300/490 (61%), Positives = 370/490 (75%)
 Frame = +3

Query: 69   SSTSTLXXXXXXXXXXXXXXXIHPHNTHPMVTRAKDGIVQPRLHPTLLMTTAEPQTVNQA 248
            +S STL               IHPHN HPM TRAKDGIV+PRL PTLL+T  EP+T  QA
Sbjct: 843  TSPSTLSIPTSSNLEPSSSPIIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQA 902

Query: 249  LKSAPWKAAMQHEYDALLANKTWTLTTLPHGKKAIGSKWVFRIKENPDGTINRYKARLVA 428
            L +  W AAMQ EY+ALL N TW+L  LP  + AIG KWVFR+KENP+G++ +YKARLVA
Sbjct: 903  LSNPTWSAAMQTEYNALLHNNTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVA 962

Query: 429  KGFNQRLGCDYSETFAPVIKPXXXXXXXXXXXXYGWDLKQIDINNAFLHGNLAEEVYMNQ 608
            KGFNQ+ G DY ETF+PVIKP            + W ++Q+D+NNAFL+G L EEVYM Q
Sbjct: 963  KGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNGTLEEEVYMQQ 1022

Query: 609  PVGFEQGSKDLVCKLNKAIYGLKQAPRAWYERLTSTLLQLGFTKSKCDPSLMVYHKGSCC 788
            P GFE   K+LVCKL+KAIYGLKQAPRAW+++L STLLQL F  SKCDPSL +Y +G+  
Sbjct: 1023 PPGFEASDKNLVCKLHKAIYGLKQAPRAWFDKLKSTLLQLNFYASKCDPSLFIYSQGNNV 1082

Query: 789  LYALIYVDDIILTGSSSSALQQLITTLSTTFALKQFTALDYFLGIEVNRTNTGSLLLTQS 968
            +Y L+YVDDII+TG++SS L  L++ L + F+LK    LD+FLGIEV     GSL+LTQS
Sbjct: 1083 IYILVYVDDIIITGNNSSILHTLVSQLHSIFSLKDLGDLDFFLGIEVKSQPDGSLILTQS 1142

Query: 969  KYIREVLQRAGIDQAKGISTPLPAKLKLSKFGSDYFADPTLYRSIVGALQYATITRPEIG 1148
            KYIR++L R  ++ +K IS+P+ +  KLSK GS+ F D +LYRS+VGALQYATITRPEI 
Sbjct: 1143 KYIRDLLNRTDMEGSKPISSPMISGSKLSKVGSEDFLDASLYRSVVGALQYATITRPEIS 1202

Query: 1149 YAVNKCCQFLAQPLDSHWSAVKRILRYLKGTVDYGLLLQPASPKSPLPLQAYCDADWASD 1328
            ++VNK CQF++ PL  HW+AVKRILRYLKGT  +GL LQPAS  S L + AYCDADWASD
Sbjct: 1203 FSVNKVCQFMSHPLTHHWAAVKRILRYLKGTTSWGLRLQPASSSSSLSIHAYCDADWASD 1262

Query: 1329 IDDRRSTSGACIYLGPNLISWWSKKQHIVAKSSAEAEYRSLALTTSELVWVQSL*TELHI 1508
             DDRRSTSGA I+LGPNL+SWWSKKQ +VA+SS EAEYRSLAL T+E+ W+Q+L +EL +
Sbjct: 1263 PDDRRSTSGASIFLGPNLVSWWSKKQTVVARSSTEAEYRSLALATTEVTWIQTLLSELKV 1322

Query: 1509 AHTAPIIYCD 1538
             H+ PII+CD
Sbjct: 1323 THSTPIIFCD 1332


>gb|KYP67571.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 482

 Score =  587 bits (1512), Expect = 0.0
 Identities = 283/461 (61%), Positives = 352/461 (76%)
 Frame = +3

Query: 156  MVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLP 335
            MVTRAKDGIV+PRL PTLL+T  EP+T  QAL  + W AAMQ E++ LL N TW+L  LP
Sbjct: 1    MVTRAKDGIVKPRLQPTLLLTRTEPKTTRQALSDSTWFAAMQAEHNTLLHNGTWSLVPLP 60

Query: 336  HGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXX 515
              +  IG KWVFR+KEN D T+++YKARLVAKGF+Q+ G DY+ETF+PVIKP        
Sbjct: 61   PNRTPIGCKWVFRVKENLDATVHKYKARLVAKGFHQQFGYDYNETFSPVIKPVTVRLILT 120

Query: 516  XXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAW 695
                + W LKQ+D+NNAFL+G LAEEVYM QP GFE   K LVC+L+KAIYGLKQAPRAW
Sbjct: 121  LVLTHRWPLKQLDVNNAFLNGTLAEEVYMTQPTGFESSDKTLVCRLHKAIYGLKQAPRAW 180

Query: 696  YERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLITTLST 875
            +E+L STLLQ  F  SKCDPSL VY   +  +Y L+YVDDII+TG++S  LQ L++ L +
Sbjct: 181  FEKLKSTLLQFHFQASKCDPSLFVYSVDNNIIYVLVYVDDIIITGNNSIVLQSLVSRLHS 240

Query: 876  TFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLS 1055
             F+LK    LDYFLGIEV   + GSL+LTQSKYIR +L R  ++ +K IS+P+ +  KLS
Sbjct: 241  AFSLKDLRDLDYFLGIEVKNQSDGSLILTQSKYIRNLLNRTDMEASKPISSPMVSGCKLS 300

Query: 1056 KFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLK 1235
            K  S+ F D +LYRS+VGALQYATI RPEI ++VNK CQF++QPL+ HW  VKRILRYLK
Sbjct: 301  KIRSEKFPDASLYRSVVGALQYATIIRPEISFSVNKVCQFMSQPLEQHWIVVKRILRYLK 360

Query: 1236 GTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIV 1415
            G + +GL LQP+   S L +QAYCDADWASD DDRRSTSGA I+LGPNL+SWWSKKQ++V
Sbjct: 361  GIISWGLRLQPSPSTSSLSIQAYCDADWASDPDDRRSTSGASIFLGPNLVSWWSKKQNVV 420

Query: 1416 AKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            A SS EAEYRSLAL  +E++W+Q+L +EL + H+ P+I+CD
Sbjct: 421  ACSSTEAEYRSLALAAAEVMWIQTLLSELRVNHSPPVIFCD 461


>gb|KYP67562.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 482

 Score =  587 bits (1512), Expect = 0.0
 Identities = 283/461 (61%), Positives = 352/461 (76%)
 Frame = +3

Query: 156  MVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLP 335
            MVTRAKDGIV+PRL PTLL+T  EP+T  QAL  + W AAMQ E++ LL N TW+L  LP
Sbjct: 1    MVTRAKDGIVKPRLQPTLLLTRTEPKTTRQALSDSTWFAAMQAEHNTLLHNGTWSLVPLP 60

Query: 336  HGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXX 515
              +  IG KWVFR+KEN D T+++YKARLVAKGF+Q+ G DY+ETF+PVIKP        
Sbjct: 61   PNRTPIGCKWVFRVKENLDATVHKYKARLVAKGFHQQFGYDYNETFSPVIKPVTARLILT 120

Query: 516  XXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAW 695
                + W LKQ+D+NNAFL+G LAEEVYM QP GFE   K LVC+L+KAIYGLKQAPRAW
Sbjct: 121  LVLTHRWPLKQLDVNNAFLNGTLAEEVYMTQPTGFESSDKTLVCRLHKAIYGLKQAPRAW 180

Query: 696  YERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLITTLST 875
            +E+L STLLQ  F  SKCDPSL VY   +  +Y L+YVDDII+TG++S  LQ L++ L +
Sbjct: 181  FEKLKSTLLQFHFQASKCDPSLFVYSVDNNIIYVLVYVDDIIITGNNSIVLQSLVSRLHS 240

Query: 876  TFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLS 1055
             F+LK    LDYFLGIEV   + GSL+LTQSKYIR +L R  ++ +K IS+P+ +  KLS
Sbjct: 241  AFSLKDLRDLDYFLGIEVKNQSDGSLILTQSKYIRNLLNRTDMEASKPISSPMVSGCKLS 300

Query: 1056 KFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLK 1235
            K  S+ F D +LYRS+VGALQYATI RPEI ++VNK CQF++QPL+ HW  VKRILRYLK
Sbjct: 301  KIRSEKFPDASLYRSVVGALQYATIIRPEISFSVNKVCQFMSQPLEQHWIVVKRILRYLK 360

Query: 1236 GTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIV 1415
            G + +GL LQP+   S L +QAYCDADWASD DDRRSTSGA I+LGPNL+SWWSKKQ++V
Sbjct: 361  GIISWGLRLQPSPSTSSLSIQAYCDADWASDPDDRRSTSGASIFLGPNLVSWWSKKQNVV 420

Query: 1416 AKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            A SS EAEYRSLAL  +E++W+Q+L +EL + H+ P+I+CD
Sbjct: 421  ACSSTEAEYRSLALAAAEVMWIQTLLSELRVNHSPPVIFCD 461


>gb|KYP51570.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 481

 Score =  581 bits (1497), Expect = 0.0
 Identities = 285/461 (61%), Positives = 348/461 (75%)
 Frame = +3

Query: 156  MVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLP 335
            M TRAKDGIV+PRL PTLL+T  EP+T+ QAL ++ W A MQ EY+ALL+N TW+L  LP
Sbjct: 1    MTTRAKDGIVKPRLQPTLLLTHVEPKTIKQALSNSTWSAVMQTEYNALLSNDTWSLVHLP 60

Query: 336  HGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXX 515
              + AIG KWVF IKENPDGT+ +YKARLV KGFNQ+ G DY+ETFAPVIK         
Sbjct: 61   PHRTAIGCKWVFCIKENPDGTVQKYKARLVTKGFNQQFGFDYNETFAPVIKLVTIRLILT 120

Query: 516  XXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAW 695
                + W L+Q+DINNAFL+G L EEVYM QP GFE   K+LVCKL+KAIYGLKQAPRAW
Sbjct: 121  LALTHHWPLQQLDINNAFLNGTLDEEVYMTQPPGFEASDKNLVCKLHKAIYGLKQAPRAW 180

Query: 696  YERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLITTLST 875
            +E+L STLLQ  F  SKCDPSL VY   +  +Y L+YVDDII+T + S+ L  L++ L +
Sbjct: 181  FEKLKSTLLQFNFQASKCDPSLFVYSHANSVIYILVYVDDIIITSNDSTLLHTLVSQLHS 240

Query: 876  TFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLS 1055
            TF+LK    LDYFLGIEV   + GSL+LTQSKYIR++L    ++ +K  S+ + +  KLS
Sbjct: 241  TFSLKDLGDLDYFLGIEVKTQSDGSLILTQSKYIRDLLNHTDMEASKPFSSLMVSGCKLS 300

Query: 1056 KFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLK 1235
            K G++ F D +LYRSIVGALQYATITRPEI ++VNK  QF++ PL  HWS VK ILRYLK
Sbjct: 301  KVGTEDFLDVSLYRSIVGALQYATITRPEISFSVNKVYQFMSHPLAHHWSTVKHILRYLK 360

Query: 1236 GTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIV 1415
            GT  +GL LQPA   SPL + AYCDADWASD DDRRSTSGA I+LG NL+SWWSKKQ +V
Sbjct: 361  GTTSWGLHLQPAPSNSPLSIHAYCDADWASDPDDRRSTSGASIFLGTNLVSWWSKKQPVV 420

Query: 1416 AKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            A+SS EAEYRSLAL T+E+ W+Q+L +EL + H+ PII+CD
Sbjct: 421  ARSSTEAEYRSLALATAEVTWIQTLLSELKVRHSPPIIFCD 461


>gb|KYP48058.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  578 bits (1491), Expect = 0.0
 Identities = 286/461 (62%), Positives = 344/461 (74%)
 Frame = +3

Query: 156  MVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLP 335
            M TR+K GI +P+ +P++L+  +EP+ V QALK   W  AM+ EY ALL N TWTL  LP
Sbjct: 1    MQTRSKSGIHKPK-YPSVLLAQSEPKNVKQALKDPKWLEAMKQEYSALLKNNTWTLVQLP 59

Query: 336  HGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXX 515
              + AIG KWVFRIKEN DG++NRYKARLVAKGF Q+ G D++ETF+P+IKP        
Sbjct: 60   PDRNAIGCKWVFRIKENSDGSVNRYKARLVAKGFLQQPGFDFNETFSPIIKPVTIRLILT 119

Query: 516  XXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAW 695
                  WD+ Q+D+NNAFL+G+L E VYM QP GFE     LVCKLNKA+YGLKQAPR W
Sbjct: 120  LAISNHWDIHQLDVNNAFLNGSLNETVYMQQPPGFEVPDSTLVCKLNKALYGLKQAPRQW 179

Query: 696  YERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLITTLST 875
            +ERL  TLLQ GF  SKCDPSL  YH  S  +Y L+YVDDII+TG+S    QQLI  L++
Sbjct: 180  FERLQYTLLQFGFKASKCDPSLFTYHMQSNIVYLLVYVDDIIITGNSFQFTQQLIDQLNS 239

Query: 876  TFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLS 1055
             F+LKQ   LDYFLGIEV     GS+LLTQSKYIR++LQR  + +A  IS+P+ +  KLS
Sbjct: 240  IFSLKQLGKLDYFLGIEVRHLQNGSVLLTQSKYIRDLLQRTNMLEANAISSPMVSSCKLS 299

Query: 1056 KFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLK 1235
            K GSD  AD T YRS+VGALQYATITRPE+ +AVNK CQF+A PL+SHW+AVKRILRYLK
Sbjct: 300  KHGSDTLADSTFYRSVVGALQYATITRPELSFAVNKVCQFMAHPLESHWNAVKRILRYLK 359

Query: 1236 GTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIV 1415
            GT+ YGL LQPA    P  L AYCDADWA+D DDRRSTSGA I+LGPNLISWWS+KQ +V
Sbjct: 360  GTMFYGLHLQPARVHQPFSLYAYCDADWAADPDDRRSTSGAAIFLGPNLISWWSRKQPVV 419

Query: 1416 AKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            A+SS EAEYRSLA  TSE++W+Q+L  EL +  + P IYCD
Sbjct: 420  ARSSTEAEYRSLAQATSEVLWIQTLLHELRVPFSTPTIYCD 460


>gb|KYP32233.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 537

 Score =  576 bits (1484), Expect = 0.0
 Identities = 284/461 (61%), Positives = 348/461 (75%)
 Frame = +3

Query: 156  MVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLP 335
            M TRAKDGIV+PRL PTLL+T  EP+T  QAL +  W AAMQ EY+ALL N TW+L  LP
Sbjct: 1    MTTRAKDGIVKPRLQPTLLLTHVEPKTTKQALSNPTWTAAMQTEYNALLHNGTWSLVPLP 60

Query: 336  HGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXX 515
              + AIG KWVFR+KENP+GT+ +YKA LVAKGFNQ+ G DY ETF+PVIKP        
Sbjct: 61   PHRTAIGCKWVFRVKENPNGTVQKYKACLVAKGFNQQFGFDYHETFSPVIKPVTVRLILT 120

Query: 516  XXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAW 695
                + W ++Q+D+NNAFL+G L EEVYM QP GFE   K LVCKL+KAIYGLKQAPRAW
Sbjct: 121  LALTHHWPIQQLDVNNAFLNGTLEEEVYMTQPPGFEASDKCLVCKLHKAIYGLKQAPRAW 180

Query: 696  YERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLITTLST 875
            +E+L STLLQ  F  SKCDPSL VY   +  +Y L+YVDDII+T ++SS L  L++ L +
Sbjct: 181  FEKLKSTLLQFHFQASKCDPSLFVYSHANNVIYILVYVDDIIITSNNSSILHTLVSQLHS 240

Query: 876  TFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLS 1055
             F+LK    LDYFLGIEV   + GSL+LTQSKYIR++L R  ++  K IS+P+    KLS
Sbjct: 241  VFSLKDLGDLDYFLGIEVKTQSDGSLILTQSKYIRDLLNRTDMEALKPISSPMIPDSKLS 300

Query: 1056 KFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLK 1235
            K GS+ F D +LYRS+VGALQYATITR EI ++VNK CQF++ PL  H SAVKRILRYLK
Sbjct: 301  KAGSEDFLDASLYRSVVGALQYATITRLEISFSVNKVCQFMSYPLAHHCSAVKRILRYLK 360

Query: 1236 GTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIV 1415
            GT  +GL LQPAS  S L + AYCDADWASD+DDRRST GA I+L PNL+SWWSKK+ +V
Sbjct: 361  GTTSWGLHLQPASSSSSLSIHAYCDADWASDLDDRRSTFGASIFLRPNLVSWWSKKKTVV 420

Query: 1416 AKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            A+SS +AEYRSLAL T+E+ W+Q+L +EL + H+ PII+CD
Sbjct: 421  ARSSTKAEYRSLALATTEVTWIQTLLSELKVNHSTPIIFCD 461


>gb|KYP47651.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 538

 Score =  575 bits (1481), Expect = 0.0
 Identities = 279/461 (60%), Positives = 351/461 (76%)
 Frame = +3

Query: 156  MVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLP 335
            M TRAK GIV+PRL PTLL+T  EP++  QAL +  W AAM+ EY+ALL N TWTL +LP
Sbjct: 1    MTTRAKAGIVKPRLQPTLLLTHTEPKSTKQALANDTWLAAMKQEYNALLNNGTWTLVSLP 60

Query: 336  HGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXX 515
              K AIG KWVFRIKEN DGT+N+YKARLVAKGF+Q+ G DY+ETF+PV+KP        
Sbjct: 61   PNKTAIGCKWVFRIKENLDGTVNKYKARLVAKGFHQQFGSDYNETFSPVVKPVTIRLILT 120

Query: 516  XXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAW 695
                + W ++Q+D+NN FL+GNL EEVYM+QP GFE   K LV K++K IYGLKQAPRAW
Sbjct: 121  LALTHHWSIQQLDVNNTFLNGNLEEEVYMSQPPGFESSDKALVYKIHKEIYGLKQAPRAW 180

Query: 696  YERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLITTLST 875
            +++L +TL QL F  SKC+PSL VY  G+  +Y L+YVDDII+TG++SS L+ +I  L++
Sbjct: 181  FDKLKATLFQLNFQISKCNPSLFVYSHGNHVIYILVYVDDIIITGNNSSILRSIIAQLNS 240

Query: 876  TFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLS 1055
             F+LK    LD+FLGIE      GS  LTQSKYIR++L R  ++ +  IS+P+ +  KLS
Sbjct: 241  AFSLKDLGRLDFFLGIEAKSNPDGSPTLTQSKYIRDLLNRTNMENSNPISSPMVSGCKLS 300

Query: 1056 KFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLK 1235
            K G   F D TLYRS+VGALQYATITRP+I ++VNK CQF++ PL+ HWSA+KRILRYLK
Sbjct: 301  KTGLKKFIDVTLYRSVVGALQYATITRPKISFSVNKVCQFMSNPLEQHWSAIKRILRYLK 360

Query: 1236 GTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIV 1415
            GT+  GL LQPA   SPL + AY DADWASD DD RSTSGA I++GPNLISWWSKKQ +V
Sbjct: 361  GTMFPGLHLQPAPSNSPLSICAYRDADWASDPDDGRSTSGASIFVGPNLISWWSKKQTVV 420

Query: 1416 AKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            A+SSAEAEYRSLAL T+E +W+Q+L +ELH++H  P++YCD
Sbjct: 421  ARSSAEAEYRSLALATAEALWIQTLLSELHVSHHTPVVYCD 461


>gb|PNX93473.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1181

 Score =  589 bits (1519), Expect = 0.0
 Identities = 287/465 (61%), Positives = 351/465 (75%)
 Frame = +3

Query: 144  NTHPMVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTL 323
            NTH M TRAK GIV+P+ +P LL+T++EP+TV QALK   W  AM+ E+DAL  N+TWTL
Sbjct: 644  NTHAMQTRAKSGIVRPKQNPKLLLTSSEPKTVKQALKDPQWYTAMKEEFDALQRNQTWTL 703

Query: 324  TTLPHGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXX 503
              LP  +KAIG KWVFR KENPDG+IN+ KARLVAKGF+Q  G D++ETF+PVIKP    
Sbjct: 704  VKLPPNRKAIGCKWVFRTKENPDGSINKLKARLVAKGFHQLHGFDFNETFSPVIKPITIR 763

Query: 504  XXXXXXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQA 683
                    Y W LKQ+DINNAFL+G+L EEVYM QP GFE     LVCKL KA+YGLKQA
Sbjct: 764  LILALAISYKWPLKQLDINNAFLNGSLDEEVYMVQPQGFETTDSSLVCKLQKALYGLKQA 823

Query: 684  PRAWYERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLIT 863
            PR W+++L +TL+Q GF  SKCDPSL +Y      +Y L+YVDDII+TGSS + +Q L+T
Sbjct: 824  PRQWFDKLATTLIQFGFKASKCDPSLFIYSHNRQVVYLLVYVDDIIITGSSLTLVQHLVT 883

Query: 864  TLSTTFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAK 1043
             L + F+LKQ   LDYFLGIEV     GSLLLTQSKYI+++L +  +  +  I+TP+ + 
Sbjct: 884  KLDSVFSLKQLGNLDYFLGIEVKHLTDGSLLLTQSKYIKDLLVKTNMIDSNPIATPMMSS 943

Query: 1044 LKLSKFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRIL 1223
             KLSK GSD  ADPTLYRS+VG+LQYATITRPEI +AVNK CQF++ PL+SHW+AVKRIL
Sbjct: 944  CKLSKVGSDNVADPTLYRSVVGSLQYATITRPEISFAVNKVCQFMSAPLESHWTAVKRIL 1003

Query: 1224 RYLKGTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKK 1403
            RYLKGT   GL L P +   PL L+AYCDADWASD DDRRSTSGA I+ GPNL+SWWS+K
Sbjct: 1004 RYLKGTSHIGLKLFPTNVHHPLSLKAYCDADWASDPDDRRSTSGAAIFFGPNLVSWWSRK 1063

Query: 1404 QHIVAKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            Q +VA+SS EAEYRSLA  T++++WVQ+L  EL +  T P IYCD
Sbjct: 1064 QQVVARSSTEAEYRSLAQATADVLWVQTLLNELTVPFTTPTIYCD 1108


>gb|PNX77046.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 515

 Score =  562 bits (1449), Expect = 0.0
 Identities = 276/453 (60%), Positives = 337/453 (74%)
 Frame = +3

Query: 132  IHPHNTHPMVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANK 311
            I  HN H M+TRAK G ++P+   T+     EP TV  AL    W  AMQ E+ AL  N 
Sbjct: 66   ISHHNDHSMITRAKTGHLKPKAFTTIF----EPTTVKSALADPQWLQAMQTEFKALTDNN 121

Query: 312  TWTLTTLPHGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKP 491
            TW+L  LP  KKAIG KW+FRIKENPDGTIN+YKARLVAKGF Q  G D++ETF+PVIKP
Sbjct: 122  TWSLVPLPPHKKAIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKP 181

Query: 492  XXXXXXXXXXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYG 671
                        Y W ++QIDINNAFL+G L EEVYM QP GFE   K LVCKL+K++YG
Sbjct: 182  VTIRIILTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYG 241

Query: 672  LKQAPRAWYERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQ 851
            LKQAPRAWYERLT TLLQ+GF  SKCDPSLMV H+   C Y LIYVDDI++TGS+   +Q
Sbjct: 242  LKQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQ 301

Query: 852  QLITTLSTTFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTP 1031
             +I  L+   ALKQ   +DYFLGIEV++T +G L+L QSKYIR++L +  +D  K I +P
Sbjct: 302  DVIQKLNFKLALKQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSP 361

Query: 1032 LPAKLKLSKFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAV 1211
            +    +LS+FG+D  +DP+LYRS VGALQYAT+TRP+I ++VNK CQF+A PL+SHW AV
Sbjct: 362  MVNSCRLSRFGTDAMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFIAHPLESHWKAV 421

Query: 1212 KRILRYLKGTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISW 1391
            KRILRYLKGTV++GLLL P+    P  L+AY DADWA+D DDRRSTSG+CIY G NL+SW
Sbjct: 422  KRILRYLKGTVNHGLLLHPSPSSPPFSLRAYSDADWATDQDDRRSTSGSCIYFGSNLVSW 481

Query: 1392 WSKKQHIVAKSSAEAEYRSLALTTSELVWVQSL 1490
             SKKQ +VA+SS EAEYRS+A TT+EL+W+QSL
Sbjct: 482  GSKKQPLVARSSTEAEYRSMANTTAELLWIQSL 514


>gb|PNX84939.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 499

 Score =  558 bits (1438), Expect = 0.0
 Identities = 275/453 (60%), Positives = 336/453 (74%)
 Frame = +3

Query: 132  IHPHNTHPMVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANK 311
            I  HN H M+TRAK G ++ +   T+     EP TV  AL    W  AMQ E+ AL  N 
Sbjct: 50   ISHHNYHSMITRAKTGHLKLKAFTTIF----EPTTVKSALADPQWLQAMQTEFKALTDNN 105

Query: 312  TWTLTTLPHGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKP 491
            TW+L  LP  KKAIG KW+FRIKENPDGTIN+YKARLVAKGF Q  G D++ETF+PVIKP
Sbjct: 106  TWSLVPLPPHKKAIGCKWIFRIKENPDGTINKYKARLVAKGFLQTPGFDFTETFSPVIKP 165

Query: 492  XXXXXXXXXXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYG 671
                        Y W ++QIDINNAFL+G L EEVYM QP GFE   K LVCKL+K++YG
Sbjct: 166  VTIRIILTLAVTYKWPVQQIDINNAFLNGILHEEVYMTQPTGFESSDKSLVCKLHKSLYG 225

Query: 672  LKQAPRAWYERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQ 851
            LKQAPRAWYERLT TLLQ+GF  SKCDPSLMV H+   C Y LIYVDDI++TGS+   +Q
Sbjct: 226  LKQAPRAWYERLTQTLLQMGFIASKCDPSLMVLHQQGACTYVLIYVDDILITGSAPHLIQ 285

Query: 852  QLITTLSTTFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTP 1031
             +I  L+   ALKQ   +DYFLGIEV++T +G L+L QSKYIR++L +  +D  K I +P
Sbjct: 286  DVIQKLNFKLALKQLGEVDYFLGIEVHKTASGGLILNQSKYIRDLLCKTTMDNCKPIGSP 345

Query: 1032 LPAKLKLSKFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAV 1211
            +    +LS+FG+D  +DP+LYRS VGALQYAT+TRP+I ++VNK CQF+A PL+SHW AV
Sbjct: 346  MVNSCRLSRFGTDAMSDPSLYRSTVGALQYATLTRPDISFSVNKVCQFIAHPLESHWKAV 405

Query: 1212 KRILRYLKGTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISW 1391
            KRILRYLKGTV++GLLL P+    P  L+AY DADWA+D DDRRSTSG+CIY G NL+SW
Sbjct: 406  KRILRYLKGTVNHGLLLHPSPSSPPFSLRAYSDADWATDQDDRRSTSGSCIYFGSNLVSW 465

Query: 1392 WSKKQHIVAKSSAEAEYRSLALTTSELVWVQSL 1490
             SKKQ +VA+SS EAEYRS+A TT+EL+W+QSL
Sbjct: 466  GSKKQPLVARSSTEAEYRSMANTTAELLWIQSL 498


>gb|PNY12955.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 535

 Score =  559 bits (1441), Expect = 0.0
 Identities = 270/461 (58%), Positives = 342/461 (74%)
 Frame = +3

Query: 156  MVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLP 335
            MVTR K G ++P++    L    EP T+  AL    W  AMQ+EY AL+ N TW+L  LP
Sbjct: 1    MVTRGKTGNLKPKVFTVSL----EPTTIKAALTDPKWLHAMQNEYKALMDNNTWSLVPLP 56

Query: 336  HGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXX 515
              KKAIG KW+FR+KEN DGT+N++KARLVAKGF Q  G D++ETF+PVIKP        
Sbjct: 57   PHKKAIGCKWIFRVKENSDGTVNKFKARLVAKGFLQTPGFDFTETFSPVIKPITIRVILT 116

Query: 516  XXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAW 695
                Y W ++QID+NNAFL+G L EEVYM QP GFE   K LVCKL+K++YGLKQAPRAW
Sbjct: 117  LAVTYKWPVQQIDVNNAFLNGWLQEEVYMKQPAGFESSDKSLVCKLHKSLYGLKQAPRAW 176

Query: 696  YERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLITTLST 875
            YERLT  LLQ+GF  SKCDPSL+++++   C Y LIYVDDI++TGS+   ++ LI  L++
Sbjct: 177  YERLTQALLQMGFVTSKCDPSLLIHYQQGACTYVLIYVDDILITGSAPHLIKDLIHKLNS 236

Query: 876  TFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLS 1055
             FALKQ   +DYFLGIEV+   +G LLL QSKYIR++L R  ++  K I +P+ +  +LS
Sbjct: 237  QFALKQLGEVDYFLGIEVHHMPSGGLLLNQSKYIRDLLCRTNMENCKPIGSPMVSSCRLS 296

Query: 1056 KFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLK 1235
            KFG+D  +DP+LYRS VGALQYAT+TRP+I ++VNK CQF+A PL++HW AVKRILRYLK
Sbjct: 297  KFGTDAMSDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLETHWKAVKRILRYLK 356

Query: 1236 GTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIV 1415
            GT  +GLLL P+    P  L+AY DADWA+D DDRRSTSG+CIY GPNLISW SKKQ +V
Sbjct: 357  GTTTHGLLLNPSPSGPPFSLRAYSDADWATDQDDRRSTSGSCIYFGPNLISWGSKKQQLV 416

Query: 1416 AKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            A+SS EAEYRS+A TT++L+W+QSL  ELH++   P + CD
Sbjct: 417  ARSSTEAEYRSMANTTADLLWIQSLLRELHVSCHTPTLLCD 457


>gb|PNX78102.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 535

 Score =  557 bits (1436), Expect = 0.0
 Identities = 270/461 (58%), Positives = 340/461 (73%)
 Frame = +3

Query: 156  MVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLP 335
            M+TR K G     L P     +  P  V  AL    W  AMQ EY AL+ NKTW+L  LP
Sbjct: 1    MITRTKTG----NLKPKTFTASIAPTNVKSALAEPHWLQAMQAEYKALMDNKTWSLVPLP 56

Query: 336  HGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXX 515
              +KAIG KW+FR+KENPDG+IN+YKARLVAKGF Q  G D++ETF+PVIKP        
Sbjct: 57   PHRKAIGCKWIFRVKENPDGSINKYKARLVAKGFLQTPGFDFTETFSPVIKPVTIRIILT 116

Query: 516  XXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAW 695
                Y W ++QIDINNAFL+G L EEVYM QP GFE   K+LVCKL+KA+YGLKQAPRAW
Sbjct: 117  LAVTYKWSVQQIDINNAFLNGILQEEVYMTQPPGFESSDKNLVCKLHKALYGLKQAPRAW 176

Query: 696  YERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLITTLST 875
            Y+RLT TLLQ+GFTKS+CDPSL+V+H+   C Y L+YVDDI++TGS+   ++ LI  L+ 
Sbjct: 177  YDRLTQTLLQMGFTKSRCDPSLLVHHQNGACTYVLVYVDDILITGSAPHLIKDLIHKLNI 236

Query: 876  TFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLS 1055
             FALKQ   +DYFLG+EV+ + +GS+LL QSKYI+++L +  ++  K I +P+ +  KLS
Sbjct: 237  KFALKQLGEVDYFLGLEVHHSTSGSILLHQSKYIKDLLCKTKMENCKPIGSPMVSSCKLS 296

Query: 1056 KFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLK 1235
            KFG+D   DP+LYRS VGALQYAT+TRP+I ++VNK CQF+A PL+SHW AVKRILRYLK
Sbjct: 297  KFGTDTMEDPSLYRSTVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKAVKRILRYLK 356

Query: 1236 GTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIV 1415
            GT ++GLLL P+    P  ++AY DADWA+D DDRRSTSG+CIY G NL+SW SKKQ +V
Sbjct: 357  GTENHGLLLHPSKSSPPFSIRAYSDADWANDQDDRRSTSGSCIYFGSNLVSWSSKKQPLV 416

Query: 1416 AKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            A+SS EAEYRS+A TT++L+W+QSL  EL I    P + CD
Sbjct: 417  ARSSTEAEYRSMANTTADLLWIQSLLVELQIPCHIPTLLCD 457


>gb|KYP46114.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 539

 Score =  557 bits (1435), Expect = 0.0
 Identities = 265/461 (57%), Positives = 340/461 (73%)
 Frame = +3

Query: 156  MVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLP 335
            M TR+K G   PR+HP+L +  +EP+TV QAL    W +AMQ EY+AL+ N TW L +LP
Sbjct: 1    MQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDLVSLP 60

Query: 336  HGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXX 515
              +KA+G KWVFR+KEN DG+I++ KARLVAKGF+Q  G D+ ETF+PVIKP        
Sbjct: 61   SDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIRIILT 120

Query: 516  XXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAW 695
                  W+L Q+D+NNAFL+G L E +YM QP GFE G K LVCKLNKA+YGLKQAPR W
Sbjct: 121  LALTNNWNLFQLDVNNAFLNGTLEETIYMVQPPGFEAGDKSLVCKLNKALYGLKQAPRQW 180

Query: 696  YERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLITTLST 875
            + +L  TL + GF  SKCDPSL  Y   +  ++ L+YVDDII+TGSSS  +QQ+   L +
Sbjct: 181  FNKLKLTLTRFGFQASKCDPSLFQYQHQTHTIFILVYVDDIIITGSSSLLIQQITNQLDS 240

Query: 876  TFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLS 1055
             F+LKQ  +LDYFLGIEV      SL+LTQSKYIR++L +  + +A G  +P+ +  KLS
Sbjct: 241  IFSLKQLGSLDYFLGIEVKHLPDKSLVLTQSKYIRDLLFKTNLAEAHGAPSPMFSNCKLS 300

Query: 1056 KFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLK 1235
            + G+D+F DPT +RS+VGALQYAT+TRPEI +AVNK CQF+A PLDSHW AVKRIL+YLK
Sbjct: 301  RSGNDFFHDPTFFRSVVGALQYATLTRPEISFAVNKVCQFMATPLDSHWVAVKRILKYLK 360

Query: 1236 GTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIV 1415
            GT+ YGL +QPA+   P+ L A+CDADWASDIDDRRSTSG+ I+ GPNLISWWS+KQ ++
Sbjct: 361  GTLSYGLHMQPAAVNGPISLTAFCDADWASDIDDRRSTSGSAIFFGPNLISWWSRKQRVI 420

Query: 1416 AKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            A+SS EAEYRS+A  ++EL W+Q+L  EL +  + P + CD
Sbjct: 421  ARSSTEAEYRSIAQASAELTWIQALLQELKVPFSTPTLLCD 461


>gb|PNY08092.1| histone deacetylase [Trifolium pratense]
          Length = 1339

 Score =  582 bits (1499), Expect = 0.0
 Identities = 287/469 (61%), Positives = 350/469 (74%)
 Frame = +3

Query: 132  IHPHNTHPMVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANK 311
            I P NTHPM TRAK GI  P  +P LL+T  EP+TV QAL    W +AM+ E++AL  N 
Sbjct: 800  IIPINTHPMHTRAKSGITVP--NPRLLLTHTEPKTVKQALLDPKWHSAMKEEFEALHKNN 857

Query: 312  TWTLTTLPHGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKP 491
            TWTL  LP  +KAIG KWVFR KENPDG+IN+ KARLVAKGF+Q  G D++ETF+PVIKP
Sbjct: 858  TWTLVALPPNRKAIGCKWVFRTKENPDGSINKLKARLVAKGFHQLQGFDFNETFSPVIKP 917

Query: 492  XXXXXXXXXXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYG 671
                        Y W LKQ+D+NNAFL+G+L EEVYM QP GFE     LVCKLNKA+YG
Sbjct: 918  ITIRLILSLAISYKWPLKQLDVNNAFLNGSLDEEVYMVQPQGFEVSDSSLVCKLNKALYG 977

Query: 672  LKQAPRAWYERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQ 851
            LKQAPR W+++LT+TLLQ GF  SKCDPSL  Y K    +Y L+YVDDII+TGSS + +Q
Sbjct: 978  LKQAPRQWFDKLTTTLLQFGFKASKCDPSLFTYSKDRQVVYLLVYVDDIIITGSSITLVQ 1037

Query: 852  QLITTLSTTFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTP 1031
             L+  L + F+LKQ   LDYFLGIEV + +  SLLLTQSKYI+++L +  + + K I+TP
Sbjct: 1038 TLVEKLDSVFSLKQLGNLDYFLGIEVQQLSDNSLLLTQSKYIKDLLVKTNMLECKPIATP 1097

Query: 1032 LPAKLKLSKFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAV 1211
            + +  KLSK GS+  AD TLYRS+VG+LQYATITRPEI +AVNK CQF++ PL++HW AV
Sbjct: 1098 MMSSCKLSKVGSNTVADTTLYRSVVGSLQYATITRPEISFAVNKVCQFMSAPLETHWIAV 1157

Query: 1212 KRILRYLKGTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISW 1391
            KRILRYLKGT+D GL L P     PLPL+ +CDADWASD DDRRSTSGA I+ GPNLISW
Sbjct: 1158 KRILRYLKGTIDQGLKLLPTDIHHPLPLRVFCDADWASDPDDRRSTSGAAIFFGPNLISW 1217

Query: 1392 WSKKQHIVAKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            WS+KQ +VA+SS EAEYRSLA  T++ +WVQ+L  EL +   AP+IYCD
Sbjct: 1218 WSRKQQVVARSSTEAEYRSLAQATADALWVQTLLKELTVPFLAPVIYCD 1266


>gb|PNX93258.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1438

 Score =  583 bits (1504), Expect = 0.0
 Identities = 288/496 (58%), Positives = 358/496 (72%)
 Frame = +3

Query: 51   DPHSDTSSTSTLXXXXXXXXXXXXXXXIHPHNTHPMVTRAKDGIVQPRLHPTLLMTTAEP 230
            +P  +TSSTS+                I  HN H MVTR K G     L P   +TT EP
Sbjct: 883  EPTHNTSSTSSTTNKSISQQPPL----ISHHNDHSMVTRGKTG----NLKPKTFITTLEP 934

Query: 231  QTVNQALKSAPWKAAMQHEYDALLANKTWTLTTLPHGKKAIGSKWVFRIKENPDGTINRY 410
             TV  AL +  W  AMQ E  AL  N TW+L  LP  K+AIG KWVFR+KENPDGTIN+Y
Sbjct: 935  TTVKSALSNPRWLQAMQSELKALTDNNTWSLVPLPPHKRAIGCKWVFRVKENPDGTINKY 994

Query: 411  KARLVAKGFNQRLGCDYSETFAPVIKPXXXXXXXXXXXXYGWDLKQIDINNAFLHGNLAE 590
            KARLVAKGF Q  G D++ETF+PV+KP            Y W +KQIDINNAFL+G L E
Sbjct: 995  KARLVAKGFLQTPGFDFTETFSPVVKPVTVRIILTLAVTYKWSVKQIDINNAFLNGLLQE 1054

Query: 591  EVYMNQPVGFEQGSKDLVCKLNKAIYGLKQAPRAWYERLTSTLLQLGFTKSKCDPSLMVY 770
            EVYM QP GFE   K LVCKL+K++YGLKQAPRAWYERLT TL+Q+GF+ SKCDPSL+V+
Sbjct: 1055 EVYMTQPTGFESSDKSLVCKLHKSLYGLKQAPRAWYERLTQTLVQMGFSASKCDPSLLVH 1114

Query: 771  HKGSCCLYALIYVDDIILTGSSSSALQQLITTLSTTFALKQFTALDYFLGIEVNRTNTGS 950
            H+   C Y LIYVDDI++TGSSS  ++ LI  L+  FALKQ   +DYFLGIEV+  ++G+
Sbjct: 1115 HQQGACTYVLIYVDDILITGSSSQLIEDLIHKLNIQFALKQLGEIDYFLGIEVHHMSSGA 1174

Query: 951  LLLTQSKYIREVLQRAGIDQAKGISTPLPAKLKLSKFGSDYFADPTLYRSIVGALQYATI 1130
            LLL QSKYI+++L +  +D  K I +P+ +  +LSKFG+D  +DP+LYRS VGALQYAT+
Sbjct: 1175 LLLNQSKYIKDLLVKTNMDNCKPIGSPMVSTCRLSKFGTDALSDPSLYRSTVGALQYATL 1234

Query: 1131 TRPEIGYAVNKCCQFLAQPLDSHWSAVKRILRYLKGTVDYGLLLQPASPKSPLPLQAYCD 1310
            TRP+I ++VNK CQ++A PL+SHW AVKRILRYL+GT+ +GLLL P+S   P  L+AY D
Sbjct: 1235 TRPDIAFSVNKVCQYMAHPLESHWKAVKRILRYLQGTISHGLLLSPSSSSPPFSLRAYSD 1294

Query: 1311 ADWASDIDDRRSTSGACIYLGPNLISWWSKKQHIVAKSSAEAEYRSLALTTSELVWVQSL 1490
            ADWA+D DDRRSTSG+CIY G NL+SW SKKQ +VA+SS EAEYRS+A TT+EL+W+QSL
Sbjct: 1295 ADWATDQDDRRSTSGSCIYFGSNLVSWGSKKQPLVARSSTEAEYRSMANTTAELLWIQSL 1354

Query: 1491 *TELHIAHTAPIIYCD 1538
              ELH+ +  P + CD
Sbjct: 1355 LKELHVPYHPPTLLCD 1370


>gb|PNX99662.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1046

 Score =  572 bits (1474), Expect = 0.0
 Identities = 285/465 (61%), Positives = 344/465 (73%)
 Frame = +3

Query: 144  NTHPMVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANKTWTL 323
            N HPMVTR K G     L P + +  +EP TV QAL    W AAM+ EY AL+ N+TW+L
Sbjct: 511  NKHPMVTRGKTG----NLKPKVFLAHSEPGTVKQALADPQWLAAMKCEYSALMKNETWSL 566

Query: 324  TTLPHGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKPXXXX 503
              LP  ++AIG KWVFRIKENPDG++N+YKARLVAKGF+Q  G DY+ETF+PV+KP    
Sbjct: 567  VPLPAHRRAIGCKWVFRIKENPDGSVNKYKARLVAKGFSQEHGFDYTETFSPVVKPVTIR 626

Query: 504  XXXXXXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYGLKQA 683
                    + WD++QID+NNAFL+G L EEVYM QP GF    K LVCKL+KA+YGLKQA
Sbjct: 627  IILTLAISFKWDIQQIDVNNAFLNGILHEEVYMVQPPGFVSTDKTLVCKLHKALYGLKQA 686

Query: 684  PRAWYERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQQLIT 863
            PRAWYERLT  LL  GF  SKCDPSL VY+     LY L+YVDDI+LTGSSS+ L  LI 
Sbjct: 687  PRAWYERLTQALLHFGFHASKCDPSLFVYNHKDVTLYVLVYVDDILLTGSSSALLHDLIL 746

Query: 864  TLSTTFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTPLPAK 1043
             L++ FALK     DYFLGIEV   + GS+LLTQSKYIR++L RA + +AKGISTP+ + 
Sbjct: 747  KLNSQFALKHMGKPDYFLGIEVKHLHNGSILLTQSKYIRDLLHRANMAEAKGISTPMVSS 806

Query: 1044 LKLSKFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAVKRIL 1223
            LKLS+FG+D   DP  YRSIVGALQY T+TRPEI + VNK CQFLA PL SHW AVKRIL
Sbjct: 807  LKLSRFGTDTLPDPHEYRSIVGALQYVTLTRPEIAFCVNKMCQFLANPLLSHWQAVKRIL 866

Query: 1224 RYLKGTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISWWSKK 1403
            RYL  T   GLLLQP++  S   ++AY D+DWASD+DDRRSTSG+CI+ GPNL+SW +KK
Sbjct: 867  RYLLSTCHLGLLLQPSAAVSKFSIRAYSDSDWASDLDDRRSTSGSCIFFGPNLVSWSAKK 926

Query: 1404 QHIVAKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
            Q +VA+SSAEAEYRS+A TTSEL+W+QSL  +L I    P++ CD
Sbjct: 927  QSLVARSSAEAEYRSMAHTTSELLWIQSLLVDLKIPIHTPVLLCD 971


>gb|PNY18109.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1239

 Score =  577 bits (1487), Expect = 0.0
 Identities = 274/469 (58%), Positives = 353/469 (75%)
 Frame = +3

Query: 132  IHPHNTHPMVTRAKDGIVQPRLHPTLLMTTAEPQTVNQALKSAPWKAAMQHEYDALLANK 311
            I  HN HPM+TR K G ++P++     +   EP++V  AL    WK AMQ EY AL+ NK
Sbjct: 702  ISHHNDHPMITRGKTGSLKPKV----FLAELEPKSVRSALSDPKWKQAMQDEYKALMDNK 757

Query: 312  TWTLTTLPHGKKAIGSKWVFRIKENPDGTINRYKARLVAKGFNQRLGCDYSETFAPVIKP 491
            TW+L  LP  +KAIG KW+FR+KENPDGTIN++KARLVAKGF Q  G D++ETF+PVIKP
Sbjct: 758  TWSLVPLPPHRKAIGCKWIFRVKENPDGTINKFKARLVAKGFLQTAGFDFTETFSPVIKP 817

Query: 492  XXXXXXXXXXXXYGWDLKQIDINNAFLHGNLAEEVYMNQPVGFEQGSKDLVCKLNKAIYG 671
                        + W ++QID+NNAFL+G L EEVYM QP GFE   K LVCKL+K++YG
Sbjct: 818  ITIRIILTLAVTFKWQVQQIDVNNAFLNGVLQEEVYMAQPSGFESSDKSLVCKLHKSLYG 877

Query: 672  LKQAPRAWYERLTSTLLQLGFTKSKCDPSLMVYHKGSCCLYALIYVDDIILTGSSSSALQ 851
            LKQAPRAWY+RLT  LLQLGF KSKCDPSL+V+++   C Y LIYVDDI++ GS+   + 
Sbjct: 878  LKQAPRAWYDRLTQALLQLGFIKSKCDPSLLVHNQNGTCTYVLIYVDDILIIGSAPHLIN 937

Query: 852  QLITTLSTTFALKQFTALDYFLGIEVNRTNTGSLLLTQSKYIREVLQRAGIDQAKGISTP 1031
             LI  L+ +FALK+   +DYFLGIEV+  ++G+LLL QSKY+R++L +A ++ +K I +P
Sbjct: 938  DLINKLNMSFALKRLGQVDYFLGIEVHHLSSGALLLNQSKYVRDLLCKAKMEDSKPIGSP 997

Query: 1032 LPAKLKLSKFGSDYFADPTLYRSIVGALQYATITRPEIGYAVNKCCQFLAQPLDSHWSAV 1211
            + +  +LSK+G+D   DPTLYRS+VGALQYAT+TRP+I ++VNK CQF+A PL+SHW AV
Sbjct: 998  MVSSCRLSKYGTDTMTDPTLYRSVVGALQYATLTRPDIAFSVNKVCQFMAHPLESHWKAV 1057

Query: 1212 KRILRYLKGTVDYGLLLQPASPKSPLPLQAYCDADWASDIDDRRSTSGACIYLGPNLISW 1391
            KRILRYLKGT+ +GLLL P+S   P  L+AY DADWA+D DDRRSTSG+CIY GPNL+SW
Sbjct: 1058 KRILRYLKGTLSHGLLLNPSSAGPPFSLRAYSDADWATDHDDRRSTSGSCIYFGPNLVSW 1117

Query: 1392 WSKKQHIVAKSSAEAEYRSLALTTSELVWVQSL*TELHIAHTAPIIYCD 1538
             SKKQ +VA+SS EAEYRS+A TT++L+W+QSL  EL +    P + CD
Sbjct: 1118 GSKKQPLVARSSTEAEYRSMANTTADLLWIQSLLRELQVPFLTPTLLCD 1166