BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00009110
         (1108 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU38301.1| hypothetical protein TSUD_157860 [Trifolium subt...   226   3e-68
gb|PNY14301.1| ribonuclease H [Trifolium pratense]                    236   5e-66
gb|PNX71533.1| ribonuclease H [Trifolium pratense]                    225   3e-63
dbj|GAU35627.1| hypothetical protein TSUD_30450 [Trifolium subte...   229   3e-63
gb|PNX72264.1| ribonuclease H [Trifolium pratense]                    214   9e-59
gb|PNY15111.1| ribonuclease H [Trifolium pratense]                    209   3e-56
gb|AFK38936.1| unknown [Medicago truncatula]                          191   1e-54
dbj|GAU29911.1| hypothetical protein TSUD_148190 [Trifolium subt...   187   3e-51
dbj|GAU41525.1| hypothetical protein TSUD_140560 [Trifolium subt...   191   5e-50
dbj|GAU30026.1| hypothetical protein TSUD_161120 [Trifolium subt...   182   3e-47
dbj|GAU47092.1| hypothetical protein TSUD_369250 [Trifolium subt...   171   1e-46
dbj|GAU39028.1| hypothetical protein TSUD_59840 [Trifolium subte...   176   7e-45
dbj|GAU35964.1| hypothetical protein TSUD_207680 [Trifolium subt...   152   4e-41
dbj|GAU39667.1| hypothetical protein TSUD_60340 [Trifolium subte...   164   6e-41
gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]           162   3e-40
gb|PNY04967.1| ribonuclease H [Trifolium pratense]                    142   4e-37
gb|PNX95041.1| ribonuclease H, partial [Trifolium pratense]           148   4e-37
dbj|GAU33706.1| hypothetical protein TSUD_148570 [Trifolium subt...   145   3e-35
dbj|GAU32098.1| hypothetical protein TSUD_292220 [Trifolium subt...   127   6e-31
dbj|GAU21787.1| hypothetical protein TSUD_329120, partial [Trifo...   132   4e-30

>dbj|GAU38301.1| hypothetical protein TSUD_157860 [Trifolium subterraneum]
          Length = 317

 Score =  226 bits (577), Expect = 3e-68
 Identities = 113/274 (41%), Positives = 167/274 (60%), Gaps = 1/274 (0%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR N+SKKG + D   PLC+ G E+++H+   C +M+LTLFAS LG+H+  S D+
Sbjct: 18   KDILPTRENLSKKGINFDLSCPLCHHGLESSNHLFMNCNLMRLTLFASNLGSHIPVSVDV 77

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
              W+L WLT KD +G QLFCVLLWK W  R+Q++F      P+ +A  +  +V E+N AN
Sbjct: 78   SVWILSWLTCKDMIGTQLFCVLLWKFWYGRNQVIFKGVVLDPIALAAEAALYVHEFNEAN 137

Query: 557  P-KASPNRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEGI 733
            P + S   +                  DAGCF+ G T WG+V+++    TSF+ACK+E I
Sbjct: 138  PRRCSQVVLQQASVSRLDDANMQLMFTDAGCFNNGYTGWGIVLRNVDGTTSFSACKREEI 197

Query: 734  ATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQDCRQLL 913
              +P V EALG+RWA+Q++  +++      +DAA VV+C+  + + +SI+ I QDCR LL
Sbjct: 198  EVEPAVAEALGVRWALQLSLDQHLDNFIILSDAANVVNCIAKRISLASIDLIAQDCRDLL 257

Query: 914  LDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIW 1015
             +F +  +  V R  N  AH +   A+ +G++ W
Sbjct: 258  CNFSNVSIKFVGRALNIDAHNVASLAKCVGSRTW 291


>gb|PNY14301.1| ribonuclease H [Trifolium pratense]
          Length = 1196

 Score =  236 bits (603), Expect = 5e-66
 Identities = 116/277 (41%), Positives = 171/277 (61%), Gaps = 4/277 (1%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR N++KKG +LD   PLC+   E+++H+   C +M+LTLFAS LG+H+  S DL
Sbjct: 897  KDILPTRENLAKKGINLDLSCPLCHHVLESSNHLFMHCNIMRLTLFASNLGSHIPHSVDL 956

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
              W+L WLT KD +G QLFCVLLWK W  R+Q++F +    P+ +A  ++E+V E+N AN
Sbjct: 957  SVWILSWLTCKDMIGTQLFCVLLWKFWYGRNQVIFKDAVFDPILLAADAIEYVHEFNEAN 1016

Query: 557  PKASP----NRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKK 724
            P+         ++ P               DAGCF+ G T WGLV+++    TSF+ACK+
Sbjct: 1017 PRRCNQVVLQHISAP---RLDDSNMQLMFTDAGCFNNGYTGWGLVLRNVDGTTSFSACKR 1073

Query: 725  EGIATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQDCR 904
            E I  +P + EALG+RWA++ A  +++      +DAA VV+C+  +T  +SIE I QDCR
Sbjct: 1074 ENIEVEPALAEALGVRWALEFALAQHLDNIIILSDAANVVNCIAKRTVLASIELIAQDCR 1133

Query: 905  QLLLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIW 1015
             LL +F +  +  V R+ N  AH +   A+ +G++ W
Sbjct: 1134 DLLCNFSNVSIKFVSRVSNVDAHNVASLAKFVGSRTW 1170


>gb|PNX71533.1| ribonuclease H [Trifolium pratense]
          Length = 798

 Score =  225 bits (574), Expect = 3e-63
 Identities = 114/285 (40%), Positives = 165/285 (57%), Gaps = 3/285 (1%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTRSN+ KKG +LD + PLC+   E++ H+   C + KLTLFAS LG+H+    DL
Sbjct: 493  KNILPTRSNLHKKGITLDLLCPLCSSEEESSQHLFLKCDMFKLTLFASHLGSHIPIDIDL 552

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
              W+L WL  +DPLG QLFC LLWK W  R+ ++F+     P  +A  +L FV E+N AN
Sbjct: 553  HDWILKWLVCQDPLGVQLFCTLLWKFWAGRNAVIFNGWQMDPTFLALDALSFVQEFNEAN 612

Query: 557  PKASPNRVTG---PXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKE 727
            P  +   +                    VDAGC ++G+T WGLV+++    T F+ACK+E
Sbjct: 613  PSRNRRALVSQSISEPSRSTCTSMNSMFVDAGCCNSGHTVWGLVLRNLNGETVFSACKRE 672

Query: 728  GIATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQDCRQ 907
             I  +PL+ EALG+RWA+Q+A  + +      +DAA VV+C+  ++  ++I  I QDCR 
Sbjct: 673  DITAEPLLAEALGVRWALQVATDQGINSVSIYSDAANVVNCINKRSNFAAINLIAQDCRN 732

Query: 908  LLLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIWSSYEQLCSL 1042
            L+    +  V  + R  N  AH LV  A+ +G++ W     L S+
Sbjct: 733  LMAGLGNVSVMFISRTQNCDAHNLVSLAKVVGSRTWLGVAPLVSV 777


>dbj|GAU35627.1| hypothetical protein TSUD_30450 [Trifolium subterraneum]
          Length = 1475

 Score =  229 bits (583), Expect = 3e-63
 Identities = 119/275 (43%), Positives = 159/275 (57%), Gaps = 2/275 (0%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR+N+ KKG SLD   PLC+   E+T+H+   C +MKLTLFAS LG+H+    DL
Sbjct: 1171 KNILPTRANLHKKGISLDLQCPLCHHEVESTNHLFLQCDLMKLTLFASHLGSHMPLQVDL 1230

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
              W+  WLT  D L  QLFC LLWK W  R+ +VF      PV +    + FV E+N AN
Sbjct: 1231 YDWIFSWLTCHDTLDTQLFCTLLWKFWATRNNVVFRGDKLDPVCLVDEVMSFVQEFNEAN 1290

Query: 557  PKASPNRVTGP--XXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEG 730
            P     RV+ P                VDAGC   G T WGLV+++  + T+F+ACK + 
Sbjct: 1291 PPRQ-GRVSLPLTTVTPSISRPSFSVFVDAGCNLNGPTVWGLVLKNHDRITTFSACKYDD 1349

Query: 731  IATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQDCRQL 910
            IA +P++ EALG+RWAIQ  + + +   C  +DAA VVDC+  K    +IE + QDCR+L
Sbjct: 1350 IAVEPVMAEALGVRWAIQFVREQGLHSVCIFSDAANVVDCICNKVKLDAIEMVAQDCREL 1409

Query: 911  LLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIW 1015
            L    +  V  V+R  N  AH L   A+ +GN+ W
Sbjct: 1410 LSSLPNVSVLFVRRDQNIDAHNLASLARLVGNRTW 1444



 Score = 65.1 bits (157), Expect = 1e-07
 Identities = 32/46 (69%), Positives = 36/46 (78%)
 Frame = +3

Query: 3   ISKLKDEHGFLRRGDENVERVLINYFADLFTSSLPTEIENTCSVVR 140
           I K+KDE G   RGDE+VERVLINYF DLFTSS P+ IE TC VV+
Sbjct: 476 IKKIKDEDGVWWRGDEHVERVLINYFEDLFTSSNPSNIEATCEVVQ 521


>gb|PNX72264.1| ribonuclease H [Trifolium pratense]
          Length = 854

 Score =  214 bits (544), Expect = 9e-59
 Identities = 110/282 (39%), Positives = 160/282 (56%), Gaps = 1/282 (0%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR+N+  KG +LD   PLC    E++ H+   C + KLTLFAS LG+H+  + DL
Sbjct: 550  KNILPTRTNLHNKGITLDLQCPLCFREEESSQHLFLKCDIFKLTLFASHLGSHIPMNIDL 609

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
              W+L WL  +DP+G QLFCVLLWK W  R+  VF+     P ++A  ++ FV ++N AN
Sbjct: 610  HDWILEWLLCQDPMGVQLFCVLLWKFWAGRNAAVFNGVQLDPGRLAIDAMSFVHDFNEAN 669

Query: 557  -PKASPNRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEGI 733
             P+     V                 VDAGC ++G+T WGLV+++    T  +ACK+E  
Sbjct: 670  PPRCRRAPVAHVPIQPGMTNPIFSLFVDAGCSNSGHTVWGLVLRNSDGETVLSACKREDF 729

Query: 734  ATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQDCRQLL 913
              DPL+ EALG+RWA+Q+   + +      +DAA VV+C+   ++ ++I  I +DCR+L+
Sbjct: 730  YVDPLMAEALGVRWALQLVVDQGINSVSIYSDAANVVNCINRNSSFAAINLIAEDCRKLM 789

Query: 914  LDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIWSSYEQLCS 1039
                +  V  V R  N  AH L   A+ +GN+ W     L S
Sbjct: 790  NRLTNVCVLFVSRTQNSDAHNLASLARIMGNRTWVGVVPLSS 831


>gb|PNY15111.1| ribonuclease H [Trifolium pratense]
          Length = 1334

 Score =  209 bits (531), Expect = 3e-56
 Identities = 112/289 (38%), Positives = 161/289 (55%), Gaps = 2/289 (0%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR+N+ +KG  ++ + P C+   E  DH+   C + +LT FASQLG  V  S  +
Sbjct: 1038 KNILPTRANLVRKGVQIENLCPQCHSAPETIDHLFLHCHLTQLTWFASQLGARVPQSVPV 1097

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIA- 553
              WLL  LT  D  GAQLFCVL+WK+WNAR+ +VF+N    P+ IAQ ++ F+ E + + 
Sbjct: 1098 HIWLLQGLTCDDTRGAQLFCVLMWKIWNARNNLVFNNKLVDPIAIAQEAMYFMQELSPSP 1157

Query: 554  -NPKASPNRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEG 730
                A+P +                  VDAGCFS   T WG+V+ +Q      +AC+KE 
Sbjct: 1158 HEHNATPMQ-DAVLAAQPMPSAPHVFYVDAGCFSGNATGWGMVIYNQSGRVVLSACRKEL 1216

Query: 731  IATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQDCRQL 910
            I  +P++ EA+G+RW +Q A   N+      +DAA VV C+      + I+ +IQDC  L
Sbjct: 1217 IDVEPVLAEAIGVRWCLQKAIELNMTDIVIVSDAATVVSCINSNKHVAVIDLVIQDCNLL 1276

Query: 911  LLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIWSSYEQLCSLANLCN 1057
            +   DS +VTHV+R  N +AH L G +  +G ++W         A LCN
Sbjct: 1277 IEQLDSVVVTHVRRHLNVVAHGLAGFSNVVGTKLWMGVVPNSISAALCN 1325



 Score = 60.5 bits (145), Expect = 4e-06
 Identities = 26/46 (56%), Positives = 36/46 (78%)
 Frame = +3

Query: 3   ISKLKDEHGFLRRGDENVERVLINYFADLFTSSLPTEIENTCSVVR 140
           I KLKD HG    G++NVER+LI+YFAD+F++S P  +++TC VVR
Sbjct: 343 IKKLKDSHGVWWHGEDNVERLLIDYFADIFSTSDPVNVDSTCDVVR 388


>gb|AFK38936.1| unknown [Medicago truncatula]
          Length = 297

 Score =  191 bits (484), Expect = 1e-54
 Identities = 103/274 (37%), Positives = 146/274 (53%), Gaps = 1/274 (0%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            + I+PTR N+ ++G  LDTV PLC    E+++H+   CP+     FAS LG       DL
Sbjct: 6    RNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHLFMACPMTLQVWFASPLGFQPPPQTDL 65

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
             +WL  WL+ K+PL  QLFCV LWK+W  R+Q +F+     P  +A S+ +FV E+N+AN
Sbjct: 66   NAWLQSWLSAKEPLAVQLFCVCLWKIWFFRNQAIFNQVVFEPRMVAASAHDFVSEFNLAN 125

Query: 557  PKASPNRVTGP-XXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEGI 733
            P  S +R+  P               +DAG    G  +WGLV+++ +    FAA +   I
Sbjct: 126  PTRSVDRLQIPAQVWIAPPTDFLKANIDAGRDKHGKVTWGLVIRNHESEVLFAATQSPDI 185

Query: 734  ATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQDCRQLL 913
              DPL+ E LGLRW IQ      +    F  DA+VVV C  G +  +SI   I DC  L 
Sbjct: 186  MADPLLVETLGLRWGIQTVLELQLSNVMFELDASVVVKCFNGLSTIASISPFISDCHDLF 245

Query: 914  LDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIW 1015
                   V+ V R  N  AH+L   A+++G++ W
Sbjct: 246  GSLVGSSVSFVNRSCNVAAHELAQVAKSIGSRTW 279


>dbj|GAU29911.1| hypothetical protein TSUD_148190 [Trifolium subterraneum]
          Length = 482

 Score =  187 bits (475), Expect = 3e-51
 Identities = 108/298 (36%), Positives = 161/298 (54%), Gaps = 11/298 (3%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILP+R+ ++KKG +LD  FPLC    E+ +H+   CP  KLT FAS LG H   + D+
Sbjct: 188  KHILPSRARLAKKGLTLDPYFPLCYQQAEDYEHLFMSCPFSKLTWFASPLGLHAPSNVDV 247

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTA--AHPVQIAQSSLEFVMEYNI 550
             SW+L  L+     G Q+FC  LWK+W  R++++F   A   H  ++A S+  F  E++ 
Sbjct: 248  NSWVLQGLSNPLVEGVQIFCTSLWKIWFHRNKLIFEQQAFVPHEYEVASSASSFGAEFSP 307

Query: 551  A---------NPKASPNRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFT 703
                      +     ++V  P              VDAGCFS G+T WGL+++D +   
Sbjct: 308  TFLREIDMNTSDVLEASQVVSPICNRIC--------VDAGCFSNGSTGWGLIVKDHEGSV 359

Query: 704  SFAACKKEGIATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIE 883
             F+AC+ E I T P++ EAL +RWAI+ A   N  +    +DA  +V  + GKT  + +E
Sbjct: 360  IFSACRFEEIHTSPILAEALAIRWAIRTAIDLNYNQVTIVSDALTIVKDIEGKTCPAKVE 419

Query: 884  FIIQDCRQLLLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIWSSYEQLCSLANLCN 1057
             I+QDC  L  +F    V +VKR  N  AH LV  ++ +G + WS    + +LA +CN
Sbjct: 420  LIVQDCISLCSNFMHVAVVYVKRTLNTEAHNLVQLSKHVGCRTWSMI--IPNLAIVCN 475


>dbj|GAU41525.1| hypothetical protein TSUD_140560 [Trifolium subterraneum]
          Length = 1610

 Score =  191 bits (484), Expect = 5e-50
 Identities = 100/213 (46%), Positives = 126/213 (59%), Gaps = 1/213 (0%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR N+ KKG SLDT  PLC+   EN  H+   C ++KL LFAS LG H   + DL
Sbjct: 1398 KNILPTRDNLKKKGISLDTSCPLCHNDSENAHHLFMHCNMLKLALFASPLGCHPPMNVDL 1457

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
              WLL WL   D LGAQLFC +LWK W AR+Q VF+     P+++AQS+L FV E+N AN
Sbjct: 1458 NCWLLEWLNCSDKLGAQLFCTILWKFWFARNQYVFNGYPIEPLRLAQSALLFVQEFNEAN 1517

Query: 557  PKASPNRV-TGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEGI 733
              +    V T                VDAGCFS   T WGLV++DQ+   ++ AC++E I
Sbjct: 1518 NLSRSTHVATRVHNTNSASPCQFSMFVDAGCFSNARTGWGLVLKDQRGNVTWNACRREDI 1577

Query: 734  ATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDA 832
               P++ EAL LRWAIQ A  + +Q   F  DA
Sbjct: 1578 EVTPILAEALELRWAIQSALSQGIQSISFNCDA 1610



 Score = 62.4 bits (150), Expect = 1e-06
 Identities = 26/47 (55%), Positives = 37/47 (78%)
 Frame = +3

Query: 3   ISKLKDEHGFLRRGDENVERVLINYFADLFTSSLPTEIENTCSVVRD 143
           I KLKDEHG   RG+E VE+++++YF +LFTS+ P+ +E TC VVR+
Sbjct: 703 IKKLKDEHGLWWRGEEKVEKLMLDYFKELFTSASPSNVEQTCGVVRE 749


>dbj|GAU30026.1| hypothetical protein TSUD_161120 [Trifolium subterraneum]
          Length = 1957

 Score =  182 bits (463), Expect = 3e-47
 Identities = 102/279 (36%), Positives = 149/279 (53%), Gaps = 3/279 (1%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            + ILPTR  + +KG  LDT+ PLC    EN++H+   C + + T F+S LG HV     L
Sbjct: 1410 RDILPTRCRLQRKGVILDTICPLCFEAEENSEHLFMKCRLAQQTWFSSCLGLHVPSQMSL 1469

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
             +W+  WL  K+   +QLF + L K+W  R+Q+VF N    P  IA ++ +F +E+N AN
Sbjct: 1470 KNWMCEWLISKNQSASQLFGITLSKIWKGRNQVVFQNALFDPCHIAIAAADFTLEFNCAN 1529

Query: 557  P--KASPNRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEG 730
            P  +A+   +T                VDAGCF+ G   +G+V++D      FAA K E 
Sbjct: 1530 PPNEAAVPVITATETWCCPPTGMSKLNVDAGCFNDGLLGFGMVVRDNLGNVCFAATKLEK 1589

Query: 731  IATDPLVTEALGLRWAIQMAKGRN-VQRPCFRTDAAVVVDCLYGKTARSSIEFIIQDCRQ 907
                P + EAL LRW +      N V      TD+ VVV CL G ++ S IE II DC  
Sbjct: 1590 KQASPTLAEALALRWCLHWILSSNQVGHFIVETDSEVVVKCLQGVSSLSEIENIILDCSD 1649

Query: 908  LLLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIWSSY 1024
            ++ +  +  V  ++R  N +AH LVG A+ +G++ W  Y
Sbjct: 1650 IMSNLSNCSVVFIRRCKNIVAHSLVGVAKHVGSRSWVGY 1688


>dbj|GAU47092.1| hypothetical protein TSUD_369250 [Trifolium subterraneum]
          Length = 335

 Score =  171 bits (434), Expect = 1e-46
 Identities = 105/296 (35%), Positives = 156/296 (52%), Gaps = 9/296 (3%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILP+R+ ++KKG +LD   PLC    E+ +H+   CP  KLT FAS L  H   + D+
Sbjct: 44   KHILPSRARLAKKGLTLDPWCPLCYQQVEDYEHLFMSCPFAKLTWFASPLDLHAPSNVDV 103

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVME----- 541
             SW+L  L+     G Q+FC +  K+W  R++++F   A  P ++A S+  FV E     
Sbjct: 104  NSWVLQGLSNPLVEGVQIFCTMS-KIWFHRNKLIFKQQAFVPHEVASSASSFVAEFSPTF 162

Query: 542  ----YNIANPKASPNRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSF 709
                Y   +     ++V  P              VDAG FS G+T WGL+++D +     
Sbjct: 163  LREIYMNTSDVLEASQVVSPVCNRIC--------VDAGSFSNGSTGWGLIVKDHESSVIL 214

Query: 710  AACKKEGIATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFI 889
            +AC+ E I T P++ EALG+RWAIQ A   N  +    +DA  +V  + GKT  + +  I
Sbjct: 215  SACRFEEIYTCPILAEALGIRWAIQTAIDLNYNQVTIVSDALTIVKGIEGKTCPAEVALI 274

Query: 890  IQDCRQLLLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIWSSYEQLCSLANLCN 1057
            +QDC  L  +F    V +VKR  N  AH LV  ++ +G + WS    + +LA +CN
Sbjct: 275  VQDCISLCSNFMHVAVVYVKRTLNTEAHNLVQLSKHVGCRTWSGI--IPNLAVVCN 328


>dbj|GAU39028.1| hypothetical protein TSUD_59840 [Trifolium subterraneum]
          Length = 1626

 Score =  176 bits (445), Expect = 7e-45
 Identities = 94/275 (34%), Positives = 137/275 (49%), Gaps = 2/275 (0%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR  + KKG +LDT  PLC    E  +H+   CP+ K   F+S LG H  +++ L
Sbjct: 1332 KAILPTRGRLEKKGITLDTTCPLCFNDIECNEHLFMQCPLSKQVWFSSPLGLHAPNNFSL 1391

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
             SW+  WL+  D L +QLF   LW +W  R++++F N    P+ +A +S +FV E+N   
Sbjct: 1392 NSWMQLWLSNPDKLASQLFSTTLWMIWKGRNKLIFKNEKFCPIYVAAASSDFVAEFNSGT 1451

Query: 557  PK-ASPNRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEGI 733
                +      P              +DAGCFS G T WG++M++      FAA   E I
Sbjct: 1452 CSFENIPSCDNPGKWEHPEQGKLKVNIDAGCFSNGTTGWGMIMRNHLGMVEFAATHLEKI 1511

Query: 734  ATDPLVTEALGLRWAIQ-MAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQDCRQL 910
                 + E + LRW +Q +    + +     +D+ V V CL G      +E IIQDCR  
Sbjct: 1512 KVSSTLAETMALRWCLQWIQASTHHEHIIIESDSEVSVKCLNGSICDVLVENIIQDCRNF 1571

Query: 911  LLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIW 1015
            L    + IV  V+R  N   H+L   A+ +G + W
Sbjct: 1572 LSSLPNVIVVFVRRSKNVATHELASLARTVGAKSW 1606


>dbj|GAU35964.1| hypothetical protein TSUD_207680 [Trifolium subterraneum]
          Length = 198

 Score =  152 bits (385), Expect = 4e-41
 Identities = 79/178 (44%), Positives = 105/178 (58%), Gaps = 1/178 (0%)
 Frame = +2

Query: 197 KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
           K ILPTR+ +  KG SLD + PLC+   E+  H+   C +MK TLFAS LG HV  + DL
Sbjct: 6   KDILPTRAKLKNKGISLDLLCPLCHLEEESASHLFLQCDLMKFTLFASHLGFHVPLNTDL 65

Query: 377 VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
             W+L WLT +D LG+QLFC LLWK W A + +VF+     PV+IA+ ++ FV EYN AN
Sbjct: 66  HYWILKWLTCQDALGSQLFCTLLWKFWTAINNVVFNGIQLEPVRIAEEAMSFVQEYNAAN 125

Query: 557 P-KASPNRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKE 727
           P K      + P              VD GC   G T+WGLV+++Q     F+ACK++
Sbjct: 126 PIKRGRISSSLPNILPAAPRPLFSIFVDVGCCVLGPTTWGLVIKNQDCNCVFSACKRD 183


>dbj|GAU39667.1| hypothetical protein TSUD_60340 [Trifolium subterraneum]
          Length = 1063

 Score =  164 bits (415), Expect = 6e-41
 Identities = 97/280 (34%), Positives = 140/280 (50%), Gaps = 7/280 (2%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR  + +KG +LD + PLC  G E  +H+   C V++   F S LG HV    +L
Sbjct: 764  KHILPTRCRLEQKGVALDPICPLCYDGEETQEHLFMHCQVIRRFWFLSPLGLHVPADVNL 823

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
              W+ HWL+  + +  QLF + LW +W  R+  VF+    + + + Q+      E+N+A 
Sbjct: 824  FKWMEHWLSNSNFMATQLFSLSLWTIWKMRNDSVFNKKYPNCMIVVQNVSILAEEFNLAC 883

Query: 557  PKASPNRVTGPXXXXXXXXXXXXXXV-------DAGCFSAGNTSWGLVMQDQQQFTSFAA 715
               S N V+ P              +       DAGCF    T WGL+ ++ +    FAA
Sbjct: 884  NLIS-NVVSEPIINSDVDVRWELPPIGFLKVNIDAGCFKNNYTCWGLLDRNHKGIVQFAA 942

Query: 716  CKKEGIATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQ 895
             K+E I   PL+ EAL L+W ++  K +N+Q      DA  VV+CL  +     IE I+ 
Sbjct: 943  TKRERITCSPLLVEALSLKWCLRWIKDQNLQNVEVEMDAENVVNCLLRRINIVEIELIVV 1002

Query: 896  DCRQLLLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIW 1015
            DC  +LL   +  V  VK   N  AH LVG A  LG+ +W
Sbjct: 1003 DCLYILLSLLNVSVLVVKSCKNKAAHGLVGVAMNLGSLLW 1042


>gb|PNY16580.1| ribonuclease H, partial [Trifolium pratense]
          Length = 894

 Score =  162 bits (409), Expect = 3e-40
 Identities = 84/236 (35%), Positives = 124/236 (52%), Gaps = 2/236 (0%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTRS + KKG +LDT  PLC    E  +H+   CP+ K   F+S LG H  ++  L
Sbjct: 659  KAILPTRSRLEKKGITLDTTCPLCFNDIECNEHLFMHCPLSKQVWFSSPLGLHAPNNVGL 718

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
            +SW+  WL+  D L +QLF   LW +W  R++++F N    P+ +A +S +FV E+N  +
Sbjct: 719  ISWMQLWLSNPDKLASQLFSTTLWMIWKGRNKLIFKNVKFCPIYVAAASSDFVAEFNSGS 778

Query: 557  PKASPNRV-TGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEGI 733
                 N V   P              +DAGCFS G T WG++M++      FAA   E I
Sbjct: 779  CCNESNIVRENPDSWEPPEQAKFKVNIDAGCFSNGTTGWGMIMRNHLGMVDFAATHLEKI 838

Query: 734  ATDPLVTEALGLRWAIQ-MAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQD 898
               P + EA+ LRW ++ +    + +     +D+ + V CL+G      +E IIQD
Sbjct: 839  KVSPTLAEAMALRWCLKWIQASTHHEHITIESDSEISVKCLHGSVCDVLVENIIQD 894


>gb|PNY04967.1| ribonuclease H [Trifolium pratense]
          Length = 207

 Score =  142 bits (359), Expect = 4e-37
 Identities = 73/191 (38%), Positives = 110/191 (57%)
 Frame = +2

Query: 452  LWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIANPKASPNRVTGPXXXXXXXXXXXXXX 631
            +W  R+Q+VF      P  IA ++L+ V E+N+A PK S  R                  
Sbjct: 1    MWFFRNQVVFQQKIPTPPDIAIAALDIVHEFNLAVPKKSKQRQQHAASEPAATLCSHLIQ 60

Query: 632  VDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEGIATDPLVTEALGLRWAIQMAKGRNVQR 811
            VDAGCF  G T++G V++D     SF+AC+KE +  DPL+ EAL +RW +Q+AK +N++ 
Sbjct: 61   VDAGCFPDGYTTFGCVIKDCSGMISFSACRKENLLVDPLLAEALAIRWCLQVAKDQNLKE 120

Query: 812  PCFRTDAAVVVDCLYGKTARSSIEFIIQDCRQLLLDFDSPIVTHVKRIDNGIAHKLVGSA 991
               ++DA VVV+C+ G  + + IE I+ DC+ L+  F S  + +V R  N +AH+LVG A
Sbjct: 121  VIIQSDALVVVECIRGSNSIACIELIVTDCKLLMSTFSSVSINYVCRDLNVLAHRLVGYA 180

Query: 992  QALGNQIWSSY 1024
              +G + W  Y
Sbjct: 181  MQVGCKSWLGY 191


>gb|PNX95041.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1348

 Score =  148 bits (374), Expect(2) = 4e-37
 Identities = 76/197 (38%), Positives = 106/197 (53%), Gaps = 1/197 (0%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR N+ ++   LD V PLC    E+T+H+   CP++K    AS LG       DL
Sbjct: 1152 KNILPTRGNLLRRRVPLDPVCPLCFNDLESTEHLFLHCPLIKQVWLASPLGVRPPPHSDL 1211

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
            V WL  WL  K+P   QLFC  LWK+W  R+Q +F N A  P++++ ++  FV E+++++
Sbjct: 1212 VLWLTQWLNCKEPFAIQLFCTTLWKIWFFRNQTIFKNLAFDPIRVSCAAQNFVSEFSVSS 1271

Query: 557  -PKASPNRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEGI 733
             P+                       VDAGC S G  SWGLV+++      FAA KK   
Sbjct: 1272 TPREQSTGQQPRCDWVAPPPDFFKLNVDAGCGSMGQVSWGLVIRNHNAEVVFAATKKTEF 1331

Query: 734  ATDPLVTEALGLRWAIQ 784
              + +V EALGLRW +Q
Sbjct: 1332 VAEAVVAEALGLRWGLQ 1348



 Score = 36.2 bits (82), Expect(2) = 4e-37
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 138  RDIWKAPIPAKVRNFMWRLAKKSSP 212
            + +W  P+P +++NFMWRLAK   P
Sbjct: 1132 KHLWAIPLPNRIKNFMWRLAKNILP 1156



 Score = 61.6 bits (148), Expect = 2e-06
 Identities = 27/47 (57%), Positives = 38/47 (80%)
 Frame = +3

Query: 3   ISKLKDEHGFLRRGDENVERVLINYFADLFTSSLPTEIENTCSVVRD 143
           I KLKD++G   +G+ENVER+L+NY++DLFTSS P  ++ TC VV+D
Sbjct: 457 ILKLKDDNGVWWKGEENVERLLVNYYSDLFTSSEPDLLDQTCEVVKD 503


>dbj|GAU33706.1| hypothetical protein TSUD_148570 [Trifolium subterraneum]
          Length = 527

 Score =  145 bits (365), Expect = 3e-35
 Identities = 98/282 (34%), Positives = 132/282 (46%), Gaps = 6/282 (2%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR  + +KG SLDT+ PLC    EN DH+   C +++ T F S LG HV     L
Sbjct: 256  KDILPTRGRLKRKGLSLDTICPLCFEVEENRDHLFMRCRLVQQTWFCSSLGIHVPSQRSL 315

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
              WL+ WL+ K+ L ++LF + LWK+W  R+ +VF NT   P  IA ++  F  E+N A 
Sbjct: 316  QDWLVEWLSNKNILASKLFRITLWKIWQGRNLLVFQNTPFDPRFIASAAAYFTFEFNGAE 375

Query: 557  PKASPNRVTGP-----XXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACK 721
               +   V  P                   VDAGCF+ G    G+V++D      FAA  
Sbjct: 376  ---NSEIVVVPTSHSIDPWCPPPPGMSKLNVDAGCFNDGFMGCGMVIRDNLGRVLFAATM 432

Query: 722  KEGIATDPLVTEALGLRWAIQMAKGRNVQ-RPCFRTDAAVVVDCLYGKTARSSIEFIIQD 898
             E       + EAL LRW +Q     N        TD+ VVV CL     +S+I FI   
Sbjct: 433  LEKRQVSSTLAEALALRWCLQWILTTNQNGHFIIETDSEVVVKCL-----QSAIFFI--- 484

Query: 899  CRQLLLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIWSSY 1024
                            +R  N +AH LVG A+  G++ W  Y
Sbjct: 485  ----------------RRCKNAVAHCLVGIAKQFGSRSWVGY 510


>dbj|GAU32098.1| hypothetical protein TSUD_292220 [Trifolium subterraneum]
          Length = 240

 Score =  127 bits (319), Expect = 6e-31
 Identities = 79/237 (33%), Positives = 114/237 (48%), Gaps = 1/237 (0%)
 Frame = +2

Query: 308  CPVMKLTLFASQLGTHVTDSYDLVSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHN 487
            C ++KL LFAS LG H   + DL  WL                          +Q VF  
Sbjct: 3    CNLLKLVLFASPLGCHPPLNVDLNCWL--------------------------NQTVFKG 36

Query: 488  TAAHPVQIAQSSLEFVMEYNIANPKASPNRV-TGPXXXXXXXXXXXXXXVDAGCFSAGNT 664
            T    V +AQ +L FV E+N AN ++ P++  T                VDA C S    
Sbjct: 37   TPFEAVSLAQPALLFVQEFNDANIQSRPSQAATRVRNSSPVPSRQFSMFVDASCLSNAQI 96

Query: 665  SWGLVMQDQQQFTSFAACKKEGIATDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVV 844
             WG+V +D      ++ACK++ I   P++ +ALGLRWAIQ +  + +Q   F  DA  VV
Sbjct: 97   GWGIVFKDHNGAVLWSACKRDNIVVTPIIADALGLRWAIQTSISQGIQCLSFACDALEVV 156

Query: 845  DCLYGKTARSSIEFIIQDCRQLLLDFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIW 1015
            +C+  K   +SI+ +I+DC  LL +    +V HV R  N  AH L   A+ +G++ W
Sbjct: 157  NCINSKCVVASIDPVIKDCTNLLENIPYAMVYHVSRKLNREAHDLASLARYVGSRTW 213


>dbj|GAU21787.1| hypothetical protein TSUD_329120, partial [Trifolium subterraneum]
          Length = 734

 Score =  132 bits (332), Expect = 4e-30
 Identities = 84/273 (30%), Positives = 123/273 (45%)
 Frame = +2

Query: 197  KKILPTRSNISKKGSSLDTVFPLCNGGCENTDHMVFLCPVMKLTLFASQLGTHVTDSYDL 376
            K ILPTR+N+  KG  LD   PLC    E++ H+   C + KLTLFAS LG         
Sbjct: 322  KNILPTRTNLHNKGIKLDLQCPLCFREEESSQHLFLKCDIFKLTLFASHLG--------- 372

Query: 377  VSWLLHWLT*KDPLGAQLFCVLLWKLWNARSQIVFHNTAAHPVQIAQSSLEFVMEYNIAN 556
                                         R+  VF+     P ++A     FV ++N AN
Sbjct: 373  -----------------------------RNASVFNGIKLDPGRLALDVTSFVHDFNEAN 403

Query: 557  PKASPNRVTGPXXXXXXXXXXXXXXVDAGCFSAGNTSWGLVMQDQQQFTSFAACKKEGIA 736
            P +                             +G T WGLV+++    T F+ACK+E I+
Sbjct: 404  PPSM----------------------------SGPTVWGLVLRNSDGETIFSACKREEIS 435

Query: 737  TDPLVTEALGLRWAIQMAKGRNVQRPCFRTDAAVVVDCLYGKTARSSIEFIIQDCRQLLL 916
             DPL+ EALG+RWA+Q+   + +      +DAA VV+C+  K++ ++I  I +DCR L+ 
Sbjct: 436  VDPLMAEALGVRWALQLVVDQGINSVSIHSDAANVVNCINRKSSFAAINLIAEDCRNLMT 495

Query: 917  DFDSPIVTHVKRIDNGIAHKLVGSAQALGNQIW 1015
               +     V R  N  AH L   A+ +GN+ W
Sbjct: 496  CLANVCDLFVSRTQNSDAHNLASLARIMGNRTW 528