BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00008983
         (1202 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX63176.1| retrovirus-related Pol polyprotein from transposo...   249   3e-77
gb|PNX63257.1| retrovirus-related Pol polyprotein from transposo...   245   4e-76
gb|PNX57709.1| retrovirus-related Pol polyprotein from transposo...   238   3e-73
gb|PNX56029.1| retrovirus-related Pol polyprotein from transposo...   238   3e-73
gb|PNY10805.1| histone deacetylase, partial [Trifolium pratense]      251   7e-73
dbj|GAU15285.1| hypothetical protein TSUD_03520 [Trifolium subte...   241   2e-72
gb|PNX79340.1| retrovirus-related Pol polyprotein from transposo...   246   4e-72
gb|PNX90864.1| retrovirus-related Pol polyprotein from transposo...   239   1e-71
gb|PNX89792.1| retrovirus-related Pol polyprotein from transposo...   239   1e-71
gb|PNX89801.1| retrovirus-related Pol polyprotein from transposo...   239   2e-71
gb|PNX90878.1| retrovirus-related Pol polyprotein from transposo...   235   4e-71
gb|PNY10806.1| histone deacetylase [Trifolium pratense]               251   2e-70
dbj|GAU44321.1| hypothetical protein TSUD_305020 [Trifolium subt...   237   4e-70
gb|PNY02599.1| retrovirus-related Pol polyprotein from transposo...   247   4e-70
gb|PNX82441.1| retrovirus-related Pol polyprotein from transposo...   238   1e-69
dbj|GAU20748.1| hypothetical protein TSUD_231620 [Trifolium subt...   231   3e-69
dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subt...   247   3e-69
gb|PNX93770.1| histone deacetylase [Trifolium pratense]               246   6e-69
gb|PNX84343.1| retrovirus-related Pol polyprotein from transposo...   236   9e-69
gb|PNY12956.1| retrovirus-related Pol polyprotein from transposo...   239   5e-68

>gb|PNX63176.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 273

 Score =  249 bits (636), Expect = 3e-77
 Identities = 108/199 (54%), Positives = 167/199 (83%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           L+IKLD++NFL+W+QQ+E V+ +HKL RF+V+P +P +Y+S+A R   EVS AY++WLVQ
Sbjct: 50  LSIKLDEKNFLLWHQQVEGVIISHKLHRFVVNPQIPAKYDSEADRELDEVSAAYDKWLVQ 109

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQ +FTWLL+TL+++VLPR ++C H++Q+WE+IHN+++A  KAK RQ++SELKT KKGT+
Sbjct: 110 DQMLFTWLLSTLAESVLPRTISCRHAFQVWEEIHNYFNAQTKAKIRQLRSELKTVKKGTK 169

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           +I+++I  ++++A++L++IG  +S+ D  D++LDGLPEEYN FVMMMY +S+  ++ ++E
Sbjct: 170 TITEFILRVRAVANTLISIGDSVSEQDQIDSILDGLPEEYNPFVMMMYGRSDSPSLFDIE 229

Query: 431 SLLLVQEAQFDKFKQELTI 375
            LLLVQE+Q +KF+QEL +
Sbjct: 230 GLLLVQESQLEKFRQELAV 248


>gb|PNX63257.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 247

 Score =  245 bits (626), Expect = 4e-76
 Identities = 105/199 (52%), Positives = 166/199 (83%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           L+IKLDD+NFL+WNQQ+E V+ ++KL RF+V+P +P +Y S++ R    VSEAY++W+VQ
Sbjct: 26  LSIKLDDKNFLLWNQQVEGVILSNKLHRFVVNPEIPAKYNSESDRELDIVSEAYDKWIVQ 85

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQ +FTWLL+TL+++VLPR + C H++Q+WE+IH +++AHLKAK RQ++SELKT KKGT+
Sbjct: 86  DQMLFTWLLSTLAESVLPRTIGCCHAFQVWEQIHKYFNAHLKAKVRQLRSELKTIKKGTK 145

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           +I++++  ++++AD+L+++G  +++ D  D++LDGLPEEYN FVMM+Y +S+  ++ ++E
Sbjct: 146 TITEFVLRVRAIADTLLSVGDSVTEQDQIDSILDGLPEEYNPFVMMIYGRSDSPSLYDIE 205

Query: 431 SLLLVQEAQFDKFKQELTI 375
            LLLVQE+Q +KF+QEL +
Sbjct: 206 GLLLVQESQLEKFRQELMV 224


>gb|PNX57709.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 242

 Score =  238 bits (607), Expect = 3e-73
 Identities = 106/197 (53%), Positives = 159/197 (80%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++N+L+WNQQ+  V+  H L RF+V+P +P QY S A RL G+ S+ Y++WL +
Sbjct: 36  LTIKLDEKNYLLWNQQVNGVITAHNLHRFVVNPEIPLQYTSVADRLDGKNSDEYQRWLFK 95

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQT+FTWLL+T+SD VLPRVLNC+HS ++W+ IH  +++ LK++ARQ++SELK TKK ++
Sbjct: 96  DQTLFTWLLSTISDGVLPRVLNCKHSHEVWDTIHKFFNSVLKSRARQLRSELKNTKKLSK 155

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+++Y+  ++S+ +SL+A+G  +S+ +  DA+L+GLPEE+NSFVMM+YS+ E   V  +E
Sbjct: 156 SVNEYLLRVKSIVNSLIAVGDVVSEQEQVDAILEGLPEEFNSFVMMVYSRFETPTVENVE 215

Query: 431 SLLLVQEAQFDKFKQEL 381
           +LLL+QE QF+KF+QEL
Sbjct: 216 ALLLLQEVQFEKFRQEL 232


>gb|PNX56029.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 242

 Score =  238 bits (607), Expect = 3e-73
 Identities = 106/197 (53%), Positives = 159/197 (80%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++N+L+WNQQ+  V+  H L RF+V+P +P QY S A RL G+ S+ Y++WL +
Sbjct: 36  LTIKLDEKNYLLWNQQVNGVITAHNLHRFVVNPEIPLQYTSVADRLDGKNSDEYQRWLFK 95

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQT+FTWLL+T+SD VLPRVLNC+HS ++W+ IH  +++ LK++ARQ++SELK TKK ++
Sbjct: 96  DQTLFTWLLSTISDGVLPRVLNCKHSHEVWDTIHKFFNSVLKSRARQLRSELKNTKKLSK 155

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+++Y+  ++S+ +SL+A+G  +S+ +  DA+L+GLPEE+NSFVMM+YS+ E   V  +E
Sbjct: 156 SVNEYLLRVKSIVNSLIAVGDVVSEQEQVDAILEGLPEEFNSFVMMVYSRFETPTVENVE 215

Query: 431 SLLLVQEAQFDKFKQEL 381
           +LLL+QE QF+KF+QEL
Sbjct: 216 ALLLLQEVQFEKFRQEL 232


>gb|PNY10805.1| histone deacetylase, partial [Trifolium pratense]
          Length = 720

 Score =  251 bits (640), Expect = 7e-73
 Identities = 108/199 (54%), Positives = 166/199 (83%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           L+IKLDD+N+L+WNQQ+E V+  HKL +F+V+P +P +Y S++ RL  +V++AY+QWLVQ
Sbjct: 28  LSIKLDDKNYLLWNQQVEGVILAHKLHKFVVNPQIPMKYASESDRLLDKVTDAYDQWLVQ 87

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQ +FTWLL+TL+++VLPR + C H++Q+W++IH ++ AHLKAK RQ++SELKT KKGT+
Sbjct: 88  DQMLFTWLLSTLAESVLPRTVGCRHAFQVWDQIHKYFDAHLKAKVRQLRSELKTVKKGTK 147

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           SIS+++  ++++AD+L++IG  IS+ D  D++L+GLPEEYN FVMM+Y +S+  ++ ++E
Sbjct: 148 SISEFVLRVRAIADTLISIGDSISEQDQIDSILEGLPEEYNPFVMMIYGRSDSPSLFDIE 207

Query: 431 SLLLVQEAQFDKFKQELTI 375
            LLLVQE+Q  KF+QEL++
Sbjct: 208 GLLLVQESQLAKFRQELSL 226


>dbj|GAU15285.1| hypothetical protein TSUD_03520 [Trifolium subterraneum]
          Length = 392

 Score =  241 bits (615), Expect = 2e-72
 Identities = 111/229 (48%), Positives = 167/229 (72%)
 Frame = -1

Query: 1064 MASNHEEQSPVSGTETQSQXXXXXXXXXXXKLTIKLDDRNFLIWNQQIESVVKTHKLQRF 885
            MAS+     PV    T S               +KLDD N+L+W+QQ+E V+  +KL RF
Sbjct: 1    MASSSSSSGPVMVESTGSSTNAASFTPK-----LKLDDGNYLLWSQQVEGVILANKLHRF 55

Query: 884  LVSPIVPPQYESDAARLAGEVSEAYEQWLVQDQTIFTWLLTTLSDAVLPRVLNCEHSWQI 705
            +V+P +P +Y S++ R    VSEAY++WLVQDQ +FTWLL+TL+++VLPR + C H++Q+
Sbjct: 56   VVNPQIPAKYASESDRELDRVSEAYDKWLVQDQMLFTWLLSTLAESVLPRTIGCRHAFQV 115

Query: 704  WEKIHNHYHAHLKAKARQIKSELKTTKKGTRSISDYISHLQSLADSLVAIGVPISDSDLC 525
            W++IH H+ AHLKAK RQ++SELK  KKGT+SI++++  ++ +AD+L++IG  IS+ D  
Sbjct: 116  WDQIHKHFEAHLKAKVRQLRSELKNVKKGTKSITEFVLRVRVIADTLISIGDSISEQDQI 175

Query: 524  DAVLDGLPEEYNSFVMMMYSKSEEFNVTELESLLLVQEAQFDKFKQELT 378
            D++L+GLPEEYN FVMM+Y +S+  ++ ++E LLLVQE+Q +KF+QEL+
Sbjct: 176  DSILEGLPEEYNPFVMMIYGRSDSPSLYDIEGLLLVQESQLEKFRQELS 224


>gb|PNX79340.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 589

 Score =  246 bits (627), Expect = 4e-72
 Identities = 109/197 (55%), Positives = 162/197 (82%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLDD+NFL+W+QQ+  V+  H L RF+V+P +P Q+ + A RL G+ S+ Y+QWL +
Sbjct: 34  LTIKLDDKNFLLWSQQVNGVITAHNLHRFVVNPQIPLQFATVADRLDGKNSDEYQQWLFK 93

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQT+FTWLL+T+SD VLPRVL+C+HS+++WEKIH ++++ LK++ARQ++SELK TKK  R
Sbjct: 94  DQTLFTWLLSTISDGVLPRVLSCKHSYEVWEKIHKYFNSVLKSRARQLRSELKNTKKHAR 153

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+++Y+  ++S+ +SL+A+G  +S+ +  DA+L+GLPEEYNSFVMM+YS+ E   V ++E
Sbjct: 154 SVNEYLLRVKSIVNSLIAVGDNVSEQEQVDAILEGLPEEYNSFVMMIYSRFETPTVEDVE 213

Query: 431 SLLLVQEAQFDKFKQEL 381
           +LLL+QE QF+KF+QEL
Sbjct: 214 ALLLLQEVQFEKFRQEL 230


>gb|PNX90864.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 401

 Score =  239 bits (610), Expect = 1e-71
 Identities = 106/198 (53%), Positives = 162/198 (81%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           +TIKLD++NFL+W+QQ+  V+  H L RF+V+P +P Q+ S A RL G+ S+ Y++WL +
Sbjct: 36  ITIKLDEKNFLLWSQQVNGVITAHNLHRFVVNPEIPLQFASVADRLDGKTSDEYQRWLFK 95

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQ++FTWLL+T+SD VLPRVL+C+H++++W+ IH ++++ LKA+ARQ++SELK TKK TR
Sbjct: 96  DQSLFTWLLSTISDNVLPRVLSCKHAYEVWDTIHKYFNSVLKARARQLRSELKNTKKLTR 155

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+++Y+  ++S+ +SL+A+G  +S  +  DAVL+GLPEEYNSFVM++YS+ E   V ++E
Sbjct: 156 SVNEYLLRIKSIVNSLIAVGDVVSVQEQVDAVLEGLPEEYNSFVMLVYSRFETPTVEDVE 215

Query: 431 SLLLVQEAQFDKFKQELT 378
           +LLL+QE QF+KF+QELT
Sbjct: 216 ALLLLQEVQFEKFRQELT 233


>gb|PNX89792.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 403

 Score =  239 bits (610), Expect = 1e-71
 Identities = 105/198 (53%), Positives = 160/198 (80%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++N+L+WNQQ+  V+  H L +F+V+P +P Q+ S   RL G+ SE Y++WL +
Sbjct: 37  LTIKLDEKNYLLWNQQVNGVITAHNLHKFVVNPDIPLQFASVTDRLDGKFSEEYQKWLFK 96

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQ++FTWLL+T+SDAVLPRVL+C+HS  +W+KIH ++++ LK++ RQ++SELK TKK  R
Sbjct: 97  DQSLFTWLLSTISDAVLPRVLHCKHSHXVWDKIHKYFNSVLKSRTRQLRSELKNTKKLAR 156

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+++Y+  ++S+ +SL+A+G  +S+ +  DA+L+GLPEE+NSFVMM+YS+ E   V ++E
Sbjct: 157 SVNEYLLRIKSIVNSLIAVGDTVSEQEQVDAILEGLPEEFNSFVMMVYSRFESPTVEDVE 216

Query: 431 SLLLVQEAQFDKFKQELT 378
           +LLL+QE QF+KF+QELT
Sbjct: 217 ALLLLQEVQFEKFRQELT 234


>gb|PNX89801.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 403

 Score =  239 bits (609), Expect = 2e-71
 Identities = 104/198 (52%), Positives = 160/198 (80%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++N+L+WNQQ+  V+  H L +F+V+P +P Q+ S   RL G+ SE Y++WL +
Sbjct: 37  LTIKLDEKNYLLWNQQVNGVITAHNLHKFVVNPDIPLQFASVTDRLDGKFSEEYQKWLFK 96

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQ++FTWLL+T+SDAVLPRVL+C+HS ++W+KIH ++++ LK++ RQ++SELK TKK  R
Sbjct: 97  DQSLFTWLLSTISDAVLPRVLHCKHSHEVWDKIHKYFNSVLKSRTRQLRSELKNTKKLAR 156

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+++Y+  ++S+ +SL+ +G  +S+ +  DA+L+GLPEE+NSFVMM+YS+ E   V ++E
Sbjct: 157 SVNEYLLRIKSIVNSLIVVGDTVSEQEQVDAILEGLPEEFNSFVMMVYSRFESPTVEDVE 216

Query: 431 SLLLVQEAQFDKFKQELT 378
           +LLL+QE QF+KF+QELT
Sbjct: 217 ALLLLQEVQFEKFRQELT 234


>gb|PNX90878.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 324

 Score =  235 bits (600), Expect = 4e-71
 Identities = 103/197 (52%), Positives = 162/197 (82%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++NFL+W+QQ+  V+  H L RF+V+P +P Q+ S   RL G+ S+ Y++WL +
Sbjct: 35  LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNPEIPLQFASVTDRLDGKNSDEYQKWLFK 94

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQ++FTWLL+T+SD VLPRVL+C+HS+++WEKIH ++++ LK++ARQ++SELK TKK +R
Sbjct: 95  DQSLFTWLLSTISDGVLPRVLSCKHSYEVWEKIHTYFNSVLKSRARQLRSELKNTKKHSR 154

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           ++++Y+  ++S+ +SL+AIG  +S+ +  DA+L+GL EE+N FVMM+YS+S+   V ++E
Sbjct: 155 TVNEYLLRIKSIVNSLIAIGDVVSEREQVDAILEGLSEEFNPFVMMVYSRSDTPKVEDVE 214

Query: 431 SLLLVQEAQFDKFKQEL 381
           +LLL+QE+QF+KF+QEL
Sbjct: 215 ALLLLQESQFEKFRQEL 231


>gb|PNY10806.1| histone deacetylase [Trifolium pratense]
          Length = 1441

 Score =  251 bits (640), Expect = 2e-70
 Identities = 108/199 (54%), Positives = 166/199 (83%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           L+IKLDD+N+L+WNQQ+E V+  HKL +F+V+P +P +Y S++ RL  +V++AY+QWLVQ
Sbjct: 28  LSIKLDDKNYLLWNQQVEGVILAHKLHKFVVNPQIPMKYASESDRLLDKVTDAYDQWLVQ 87

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQ +FTWLL+TL+++VLPR + C H++Q+W++IH ++ AHLKAK RQ++SELKT KKGT+
Sbjct: 88  DQMLFTWLLSTLAESVLPRTVGCRHAFQVWDQIHKYFDAHLKAKVRQLRSELKTVKKGTK 147

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           SIS+++  ++++AD+L++IG  IS+ D  D++L+GLPEEYN FVMM+Y +S+  ++ ++E
Sbjct: 148 SISEFVLRVRAIADTLISIGDSISEQDQIDSILEGLPEEYNPFVMMIYGRSDSPSLFDIE 207

Query: 431 SLLLVQEAQFDKFKQELTI 375
            LLLVQE+Q  KF+QEL++
Sbjct: 208 GLLLVQESQLAKFRQELSL 226


>dbj|GAU44321.1| hypothetical protein TSUD_305020 [Trifolium subterraneum]
          Length = 468

 Score =  237 bits (605), Expect = 4e-70
 Identities = 113/239 (47%), Positives = 172/239 (71%), Gaps = 2/239 (0%)
 Frame = -1

Query: 1088 ASPSSV*IMASNHEEQSPVSGTETQ--SQXXXXXXXXXXXKLTIKLDDRNFLIWNQQIES 915
            ASPSS+      HE+Q+  + T     +             LTIKLD++NFL+W+QQI  
Sbjct: 226  ASPSSI------HEDQNDATFTAANLPTTTKDSTKSGLTHSLTIKLDEKNFLLWSQQING 279

Query: 914  VVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQDQTIFTWLLTTLSDAVLPR 735
            V+ TH L RF+V+P +P Q+ S   RL G++SE Y++WL  DQT+FTWLL+T+SD++LPR
Sbjct: 280  VITTHNLHRFVVNPEIPLQFASVNDRLNGKISEEYQKWLFIDQTLFTWLLSTISDSILPR 339

Query: 734  VLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTRSISDYISHLQSLADSLVAI 555
            VL+C+H+ ++W+KIH H+++ LK++ RQ++ ELK TKK  R IS+Y+  ++S+ +SL+A+
Sbjct: 340  VLHCKHAHEVWDKIHKHFNSVLKSRIRQLRFELKNTKKLARPISEYLLRIKSIINSLIAL 399

Query: 554  GVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELESLLLVQEAQFDKFKQELT 378
            G  +S+ +  + +LDGLPEE+N FVMM+YS+ +   V ++E LL++QEAQF+KF+QELT
Sbjct: 400  GEAVSEQEQVNVILDGLPEEFNPFVMMVYSRYDTPTVEDVEGLLMLQEAQFEKFRQELT 458


>gb|PNY02599.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 956

 Score =  247 bits (631), Expect = 4e-70
 Identities = 120/279 (43%), Positives = 179/279 (64%), Gaps = 3/279 (1%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++NFL+W+QQ+  V+  H L RF+V+P +P Q++S  AR  G  S AY+QWLV+
Sbjct: 43  LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNPQIPLQFDSMEARAQGMNSAAYQQWLVK 102

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQT+FTWLL+TLS++VLPRVLNC+H+ ++W+KIH ++++ LK++ARQ++SELK TKK  R
Sbjct: 103 DQTLFTWLLSTLSESVLPRVLNCKHAHEVWDKIHRYFNSVLKSRARQLRSELKNTKKHAR 162

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           SI++Y+  ++++ +SL+A+G  +S+ +  DA+L+GLPEE+NSFVMM+YS+ +   V ++E
Sbjct: 163 SINEYLLRIKTIVNSLIAVGDVVSEQEQVDAILEGLPEEFNSFVMMIYSRFDSPTVEDVE 222

Query: 431 SLLLVQEAQFDKFKQEL---TITXXXXXXXXXXXXXXXXXXXXXXNVXXXXXXXXXXXXX 261
           +LLL+QEAQF+KFKQEL   T++                                     
Sbjct: 223 ALLLLQEAQFEKFKQELSTPTVSAHVAHTEAKSSESVNDQDLSEAGTAHYNVNSNRGRGK 282

Query: 260 XXXXXXXXXXXXXXXXXRPTCQLCGKYGHAVADCWHRYD 144
                            +  CQ+CGK  H     WH+YD
Sbjct: 283 GKSRGRGRGRSQSSAQGKVQCQICGKPNHDAIGYWHKYD 321


>gb|PNX82441.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 537

 Score =  238 bits (607), Expect = 1e-69
 Identities = 106/197 (53%), Positives = 159/197 (80%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++N+L+WNQQ+  V+  H L RF+V+P +P QY S A RL G+ S+ Y++WL +
Sbjct: 18  LTIKLDEKNYLLWNQQVNGVITAHNLHRFVVNPEIPLQYTSVADRLDGKNSDEYQRWLFK 77

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQT+FTWLL+T+SD VLPRVLNC+HS ++W+ IH  +++ LK++ARQ++SELK TKK ++
Sbjct: 78  DQTLFTWLLSTISDGVLPRVLNCKHSHEVWDTIHKFFNSVLKSRARQLRSELKNTKKLSK 137

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+++Y+  ++S+ +SL+A+G  +S+ +  DA+L+GLPEE+NSFVMM+YS+ E   V  +E
Sbjct: 138 SVNEYLLRVKSIVNSLIAVGDVVSEQEQVDAILEGLPEEFNSFVMMVYSRFETPTVENVE 197

Query: 431 SLLLVQEAQFDKFKQEL 381
           +LLL+QE QF+KF+QEL
Sbjct: 198 ALLLLQEVQFEKFRQEL 214


>dbj|GAU20748.1| hypothetical protein TSUD_231620 [Trifolium subterraneum]
          Length = 327

 Score =  231 bits (588), Expect = 3e-69
 Identities = 100/198 (50%), Positives = 157/198 (79%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++NFL W+QQ+  V+  H L RF+V+P +P Q+ + A R+ G+ S+ Y +W+ +
Sbjct: 37  LTIKLDEKNFLSWSQQVNGVITAHNLHRFIVNPEIPLQFATVADRIDGKTSDEYRKWIFK 96

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQT+FTWLL+T+SD VLPRV++C+H+ ++W+KIH ++++ LK++ RQ+KSELK TKK  R
Sbjct: 97  DQTLFTWLLSTISDVVLPRVVHCKHAHEVWDKIHKYFNSVLKSRIRQLKSELKNTKKLAR 156

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
            +S+Y+  ++S+ +SL+A+G  I++ +  +A+LDGLPEE+NSFVMM+YS+ +   +  +E
Sbjct: 157 PVSEYLLRIKSIVNSLIAMGEMITEQEQVEAILDGLPEEFNSFVMMVYSRFDTPTIEYVE 216

Query: 431 SLLLVQEAQFDKFKQELT 378
            LL++QEAQF+KF+QELT
Sbjct: 217 GLLMIQEAQFEKFRQELT 234


>dbj|GAU19342.1| hypothetical protein TSUD_336290 [Trifolium subterraneum]
          Length = 1442

 Score =  247 bits (631), Expect = 3e-69
 Identities = 108/197 (54%), Positives = 162/197 (82%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++N+L+WNQQ+  V+  H L RF+V+P +P Q+ SDA R+A   S+ Y QW+ +
Sbjct: 37  LTIKLDEKNYLLWNQQVNGVITAHDLHRFIVNPQIPIQFASDADRVADRTSDEYRQWIFK 96

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQT+FTWLL+TLSD+VLPRVL C+H++Q+W++IH ++H+ L+A+ARQ++SELK TKK +R
Sbjct: 97  DQTLFTWLLSTLSDSVLPRVLGCKHAFQVWDQIHKYFHSVLQARARQLRSELKNTKKASR 156

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+ +Y+  ++S+ +SL+A+G  +SD +  DA+L+GLPEE+NSFVMM+YS+ +   V ++E
Sbjct: 157 SVGEYLLRIKSIVNSLLAVGDLVSDREQVDAILEGLPEEFNSFVMMVYSRFDTPTVEDVE 216

Query: 431 SLLLVQEAQFDKFKQEL 381
           +LLL+QEAQF+KF+QEL
Sbjct: 217 ALLLLQEAQFEKFRQEL 233


>gb|PNX93770.1| histone deacetylase [Trifolium pratense]
          Length = 1453

 Score =  246 bits (629), Expect = 6e-69
 Identities = 110/197 (55%), Positives = 163/197 (82%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++NFL+W+QQ+  V+  H L RF+V+P +P QY S   RL G+ S+ Y++WL +
Sbjct: 37  LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNPEIPLQYASVTDRLDGKNSDEYQKWLFK 96

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQT+FTWLL+T+SD+VLPRVLNC+H+ ++W+KIH ++++ LK++ARQ++SELK TKK  R
Sbjct: 97  DQTLFTWLLSTISDSVLPRVLNCKHAHEVWDKIHKYFNSVLKSRARQLRSELKNTKKLAR 156

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+S+Y+  ++S+ +SL+A+G  +++ +  DA+L+GLPEE+NSFVMM+YSKSE   V E+E
Sbjct: 157 SVSEYLLRIKSIVNSLIAMGDVVTEQEQVDAILEGLPEEFNSFVMMVYSKSENPTVEEIE 216

Query: 431 SLLLVQEAQFDKFKQEL 381
           +LLL+QEAQF+KF+QEL
Sbjct: 217 ALLLLQEAQFEKFRQEL 233


>gb|PNX84343.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 560

 Score =  236 bits (602), Expect = 9e-69
 Identities = 105/197 (53%), Positives = 158/197 (80%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKLD++NFL+W+QQ+  V+  H L RF+V+P +P Q+ S   RL G  S+ Y+QWL +
Sbjct: 34  LTIKLDEKNFLLWSQQVNGVITAHNLHRFVVNPQIPLQFASVTDRLDGNNSDEYQQWLFK 93

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQT+FTWLL+T+SD+VLPRVLNC+HS ++WE IH ++++ LK++ARQ++SELK TKK  +
Sbjct: 94  DQTLFTWLLSTISDSVLPRVLNCKHSHEVWETIHKYFNSVLKSRARQLRSELKNTKKHGK 153

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+++Y+  ++S+ +SL+A+G  +S  +  DA+L+GLPE++NSFVMM+YS+ E   V ++E
Sbjct: 154 SVNEYLLRIKSIVNSLIAVGDTVSVQEQVDAILEGLPEDFNSFVMMIYSRFETPTVEDVE 213

Query: 431 SLLLVQEAQFDKFKQEL 381
           +LLL+QE QF+KF+QEL
Sbjct: 214 ALLLLQEVQFEKFRQEL 230


>gb|PNY12956.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Trifolium pratense]
          Length = 823

 Score =  239 bits (611), Expect = 5e-68
 Identities = 106/198 (53%), Positives = 161/198 (81%)
 Frame = -1

Query: 971 LTIKLDDRNFLIWNQQIESVVKTHKLQRFLVSPIVPPQYESDAARLAGEVSEAYEQWLVQ 792
           LTIKL+D+N+L+W+QQ+  V+  H L RF+V+P +P QY S A RL G+ S+ Y++WLV+
Sbjct: 32  LTIKLNDKNYLLWSQQVNGVITAHNLHRFVVNPEIPLQYASVADRLDGKNSDEYQKWLVK 91

Query: 791 DQTIFTWLLTTLSDAVLPRVLNCEHSWQIWEKIHNHYHAHLKAKARQIKSELKTTKKGTR 612
           DQT+FTWLL+T+SD VLPRVLNC HS ++WEKIH ++++ LK++ RQ++SELK T+K  R
Sbjct: 92  DQTLFTWLLSTISDDVLPRVLNCRHSHEVWEKIHKYFNSVLKSRTRQLRSELKNTEKLAR 151

Query: 611 SISDYISHLQSLADSLVAIGVPISDSDLCDAVLDGLPEEYNSFVMMMYSKSEEFNVTELE 432
           S+++Y+  ++S+ +SL+A+G  +++ +  DA+L+GLPE++NSFVMM+YS+ E   V ++E
Sbjct: 152 SVNEYLLRIKSIVNSLIAVGDVVTEQEQVDAILEGLPEDFNSFVMMVYSRFETPKVEDVE 211

Query: 431 SLLLVQEAQFDKFKQELT 378
           +LLL+QE QF+KF+QELT
Sbjct: 212 ALLLLQEVQFEKFRQELT 229