BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00006873
         (2169 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposo...   307   e-142
gb|PNX92571.1| histone deacetylase [Trifolium pratense]               285   e-141
gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposo...   280   e-137
gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposo...   273   e-135
gb|PNY02430.1| retrovirus-related Pol polyprotein from transposo...   263   e-134
gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposo...   270   e-133
gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposo...   269   e-133
gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]      258   e-132
dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subt...   264   e-132
dbj|GAU32278.1| hypothetical protein TSUD_62940 [Trifolium subte...   257   e-131
gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposo...   257   e-131
gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposo...   261   e-129
gb|PNX91972.1| retrovirus-related Pol polyprotein from transposo...   248   e-128
gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposo...   254   e-128
gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposo...   254   e-128
dbj|GAU29466.1| hypothetical protein TSUD_65010 [Trifolium subte...   263   e-128
gb|KYP34572.1| Retrovirus-related Pol polyprotein from transposo...   259   e-127
gb|KYP52268.1| Retrovirus-related Pol polyprotein from transposo...   265   e-127
gb|KYP34577.1| Retrovirus-related Pol polyprotein from transposo...   255   e-126
gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposo...   242   e-125

>gb|KHN21230.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Glycine soja]
          Length = 1429

 Score =  307 bits (786), Expect(2) = e-142
 Identities = 149/299 (49%), Positives = 197/299 (65%), Gaps = 3/299 (1%)
 Frame = -1

Query: 2082 TSNQLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPLNPKHL 1903
            T N   DTAA+ H++ + P P +A   S  +H+FLGNG GL +  IS+   PSP +P H 
Sbjct: 363  TMNNNLDTAATQHVTLMQPPPGSAPPPSHLEHIFLGNGQGLRVTGISSYAFPSPSHPHHT 422

Query: 1902 LHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKDGLYH 1723
            LH  N+L+VP +NKNL+S+ KF +DN+A+ QFHP+    KSQ +   LL+G+  K GLY 
Sbjct: 423  LHLNNVLHVPSINKNLISVSKFASDNNAYIQFHPSHFVMKSQDNDQILLQGKLDKAGLYP 482

Query: 1722 LPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGAL---WHNRLGHPHITVL 1552
            +    S                  ++++S  H+V S  TS   L   WH+RLGH ++  +
Sbjct: 483  IHSQSSTT----------------SSLSSRHHSVHSIVTSHNDLYFQWHHRLGHTNLDTM 526

Query: 1551 NSVLKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSSS 1372
            N+VLKSCN PT   NK DFC++CC+GK HRLPS +S + Y+SPLELIYCDLWGPAPM SS
Sbjct: 527  NNVLKSCNMPTFNKNKTDFCISCCLGKSHRLPSQLSQSTYNSPLELIYCDLWGPAPMQSS 586

Query: 1371 MGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFR 1195
            MGY+YYISF+DA+S++ W+YFL  KS+ L  FK FK L E Q N  IK+ Q+DWGGEFR
Sbjct: 587  MGYKYYISFIDAFSKYIWVYFLHDKSETLTIFKQFKALAELQLNTKIKAIQSDWGGEFR 645



 Score =  231 bits (589), Expect(2) = e-142
 Identities = 112/185 (60%), Positives = 140/185 (75%), Gaps = 5/185 (2%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + YL+ LG+IHR+ICPHTHHQNGVVERKHRHIV+MGLSLLS +S+P  YWDHAFHTAVY+
Sbjct: 648  TSYLSQLGIIHRIICPHTHHQNGVVERKHRHIVEMGLSLLSHSSLPYHYWDHAFHTAVYI 707

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLP+    + IP   L+N +PDYNFL+ FGC+C+PLL PY++ KFQ+R+ ECIFLGYS
Sbjct: 708  INRLPAS-HNHCIPLKVLFNNVPDYNFLRAFGCACYPLLTPYNNPKFQYRSKECIFLGYS 766

Query: 830  SSHKGYKCLDS-TGRMFIFKDVLFNETNFPYVRLFSVTSSPTANTYFTLPPL----QMPN 666
            +  +GYKCLD+ +GR++I KDVLFNE +FPY      T SP   T  +  PL     +P 
Sbjct: 767  T--RGYKCLDNKSGRIYISKDVLFNEKHFPYQITPPTTCSPN-QTVTSAAPLGVVNHIPQ 823

Query: 665  QPPST 651
            Q P T
Sbjct: 824  QTPHT 828



 Score =  191 bits (484), Expect = 8e-47
 Identities = 92/145 (63%), Positives = 113/145 (77%)
 Frame = -2

Query: 440  NTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTWSL 261
            NTH M+TR+K G ++P L P      TEP TV QAL+S HW  AMQ EY AL  N TWSL
Sbjct: 888  NTHHMLTRSKTGHLKPPLFPTINLTTTEPTTVQQALSSIHWTEAMQQEYQALQANKTWSL 947

Query: 260  VHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPITVR 81
            V LP  K+AIG KW+FR KENPDG++NKYKARLVAKGFNQ+ G DYS+T++PV+KPITVR
Sbjct: 948  VPLPPHKRAIGCKWIFRIKENPDGTINKYKARLVAKGFNQKYGQDYSDTYSPVVKPITVR 1007

Query: 80   IILTLALTNGWSIKQIDINNAFLHG 6
             +LT+ALT+ W + Q+D+NNAFL+G
Sbjct: 1008 TVLTIALTSKWPLIQLDVNNAFLNG 1032


>gb|PNX92571.1| histone deacetylase [Trifolium pratense]
          Length = 1488

 Score =  285 bits (728), Expect(2) = e-141
 Identities = 145/303 (47%), Positives = 177/303 (58%)
 Frame = -1

Query: 2100 AGPSFATSNQLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSP 1921
            AGP+ ++++   D+ AS H++N   N    T   G DH+++GNG GL I S      PSP
Sbjct: 403  AGPA-SSASWYPDSGASFHVTNDASNLQQLTPFEGHDHIYIGNGQGLHISSAGTSTFPSP 461

Query: 1920 LNPKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGT 1741
              P H L   N+L VP + KNLLS+ +F  DND +F F  N C  KSQA  +TLLKG   
Sbjct: 462  FAPNHPLTLHNLLLVPSITKNLLSVSQFCKDNDVYFLFSANTCLVKSQATDATLLKGHVG 521

Query: 1740 KDGLYHLPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGALWHNRLGHPHI 1561
             DGLY  P +                        ST + V S   S+  LWH RLGHP  
Sbjct: 522  SDGLYEFPAV-----SLHSAKSSPLVSLASVNSTSTCNKVSSLAPSSHYLWHQRLGHPSH 576

Query: 1560 TVLNSVLKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPM 1381
                 V++ CN      +   FC ACCMGK HRL S +S T YS+PLEL+YCDLWGP+P 
Sbjct: 577  NSFKLVMQHCNFTVNNKDSSQFCAACCMGKAHRLHSPLSHTTYSAPLELVYCDLWGPSPS 636

Query: 1380 SSSMGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGE 1201
             S  GY YYISFVDAYS+FTWIY LK KSDAL  FK FK++VE QF   +K+ QTDWGGE
Sbjct: 637  PSKQGYHYYISFVDAYSKFTWIYLLKSKSDALLIFKQFKSMVELQFGHPLKALQTDWGGE 696

Query: 1200 FRP 1192
            FRP
Sbjct: 697  FRP 699



 Score =  248 bits (633), Expect(2) = e-141
 Identities = 117/187 (62%), Positives = 146/187 (78%), Gaps = 4/187 (2%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            +K+L +LGV+HRLICPHTHHQNGVVERKHRHIVD+GL+LLSQA++PI +WD+AF TAVYL
Sbjct: 701  TKFLTELGVVHRLICPHTHHQNGVVERKHRHIVDLGLTLLSQATLPITFWDYAFPTAVYL 760

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS       PY  L+ + PDY+FLKVFGC+CFPLLRPYH+ K +FR+ EC+FLGYS
Sbjct: 761  INRLPSSSINFQTPYFLLFKQHPDYHFLKVFGCACFPLLRPYHNHKLEFRSQECLFLGYS 820

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTS----SPTANTYFTLPPLQMPNQ 663
             SHKGY+CL  +GR+++ KDVLFNE+ FPY  LF ++S    SP + + F LPPL  P  
Sbjct: 821  PSHKGYRCLSPSGRLYVSKDVLFNESRFPYKELFPISSGSSHSPPSKS-FKLPPL--PTF 877

Query: 662  PPSTATV 642
            P  T  +
Sbjct: 878  PSITTDI 884



 Score =  196 bits (499), Expect = 1e-48
 Identities = 92/148 (62%), Positives = 116/148 (78%)
 Frame = -2

Query: 446  PQNTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTW 267
            P N H M TRAK G  QP+L        +EP +V QAL  P W AAMQ EYDAL+ N TW
Sbjct: 951  PVNAHNMQTRAKSGFKQPKL----LVAHSEPKSVKQALLDPSWHAAMQTEYDALLNNNTW 1006

Query: 266  SLVHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPIT 87
            +LV LP  ++AIG KWVFR KENPDG++NKYKARLVAKGF+QR+G D+ ETF+PV+KP+T
Sbjct: 1007 TLVPLPPDRQAIGCKWVFRIKENPDGTVNKYKARLVAKGFHQRQGFDFLETFSPVVKPVT 1066

Query: 86   VRIILTLALTNGWSIKQIDINNAFLHGL 3
            +R+ILT+A+T GWSI+Q+D+NNAFL+G+
Sbjct: 1067 IRVILTIAITKGWSIQQLDVNNAFLNGV 1094


>gb|KYP53274.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 839

 Score =  280 bits (716), Expect(2) = e-137
 Identities = 140/304 (46%), Positives = 177/304 (58%), Gaps = 4/304 (1%)
 Frame = -1

Query: 2094 PSFATSNQLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPLN 1915
            PS   +    D+ AS+H++N+  N    T   G D + +GNG G+PI+S       SPLN
Sbjct: 4    PSSGANIWYPDSGASNHVTNVSHNIQQYTPFEGPDQIVIGNGQGIPINSSGVTHFSSPLN 63

Query: 1914 PKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKD 1735
            P   L   N+LYVP + KNL+S+ +F  DN  FF+FH  FC  KSQA+  TLL G    D
Sbjct: 64   PHISLTLHNLLYVPTITKNLISVSQFCKDNSVFFEFHSTFCLVKSQANSETLLHGVLGPD 123

Query: 1734 GLYHLPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTG----ALWHNRLGHP 1567
            GLY  P +                          P    +HT S+     A WH+RLGHP
Sbjct: 124  GLYQFPSLLP------------------------PRQPSAHTVSSQSVSYATWHSRLGHP 159

Query: 1566 HITVLNSVLKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPA 1387
            H  VL SV K CN P I  +  DFC +CC+GK H+LPS +S TVY +P ELIY DLWGPA
Sbjct: 160  HNDVLKSVFKLCNFPNINKSVSDFCTSCCLGKSHKLPSQLSKTVYHTPFELIYSDLWGPA 219

Query: 1386 PMSSSMGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWG 1207
            P+ S  GY+YY++FVDA++RFTWI+ LK K+  L  FK F  +V NQF   IK+ QTDWG
Sbjct: 220  PVLSDNGYQYYVTFVDAHTRFTWIFMLKSKAHTLDVFKQFHAMVRNQFQLPIKAIQTDWG 279

Query: 1206 GEFR 1195
            GEFR
Sbjct: 280  GEFR 283



 Score =  240 bits (613), Expect(2) = e-137
 Identities = 108/182 (59%), Positives = 142/182 (78%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + YLA  G+ HR+ICPHTHHQNGVVERKHRHIV++GL+LL+QA +P+ +WD+AF T+VYL
Sbjct: 286  TSYLAQHGIHHRIICPHTHHQNGVVERKHRHIVELGLTLLAQAHLPMHFWDYAFLTSVYL 345

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS   +  +P+  L++ +PDYNFL+VFGCSCFP LRPY+ TK QFR+ EC+FLGYS
Sbjct: 346  INRLPSSSIQQDVPFRKLFHHLPDYNFLRVFGCSCFPHLRPYNKTKLQFRSQECVFLGYS 405

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSSPTANTYFTLPPLQMPNQPPST 651
            +SHKGYKCL  +GR+FI KDV+F E  FPY  LFS ++   +++  T+P +    Q P T
Sbjct: 406  TSHKGYKCLAPSGRVFISKDVIFCENRFPYPTLFSPSTPSPSSSSITVPLVVTNPQAPIT 465

Query: 650  AT 645
            +T
Sbjct: 466  ST 467



 Score =  198 bits (503), Expect = 7e-50
 Identities = 94/147 (63%), Positives = 118/147 (80%)
 Frame = -2

Query: 446 PQNTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTW 267
           P N HPM TRAK GIV+PRL P       EP    QALAS  W AAM+ EY+AL+ NGTW
Sbjct: 508 PINLHPMTTRAKAGIVKPRLQPTLLLTHFEPKNTKQALASDTWLAAMKQEYNALMANGTW 567

Query: 266 SLVHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPIT 87
           +LV LP+ + AIG KWVFR KENPDG+++K+KARLVAKGF+Q+ G DY+ETF+PV+KP+T
Sbjct: 568 TLVPLPSHRTAIGCKWVFRIKENPDGTVHKHKARLVAKGFHQQFGFDYTETFSPVVKPVT 627

Query: 86  VRIILTLALTNGWSIKQIDINNAFLHG 6
           +R+ILTLALT+ WSI+Q+D+NNAFL+G
Sbjct: 628 IRLILTLALTHHWSIQQLDVNNAFLNG 654


>gb|KYP75416.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 785

 Score =  273 bits (698), Expect(2) = e-135
 Identities = 140/310 (45%), Positives = 180/310 (58%), Gaps = 3/310 (0%)
 Frame = -1

Query: 2115 QAYAVAGPSFATSNQLG--DTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSIS 1942
            QA  +A  + + S+ L   D+ AS+H++N+  N    T   G D + +GNG GLPI+S  
Sbjct: 243  QASPMALTALSPSSHLWYPDSGASNHVTNMSHNIQQLTPFEGPDQIIIGNGHGLPINSSG 302

Query: 1941 NEIIPSPLNPKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGST 1762
                PSPL P   L   N+LYVP + KNL+S+ +F  DN  FF+FH   C  KSQ    T
Sbjct: 303  VTAFPSPLKPHISLTLNNLLYVPNITKNLISVSQFCKDNSVFFEFHSTCCLVKSQDTKDT 362

Query: 1761 LLKGQGTKDGLYHLPGIYSAVXXXXXXXXXXXXXXXHATVASTPH-NVISHTTSTGALWH 1585
            LL G    DGLY  P +                       A TP  N  S  +     WH
Sbjct: 363  LLMGVVGPDGLYQFPSLLQP----------------RQQPAITPSANTASCHSVPYVTWH 406

Query: 1584 NRLGHPHITVLNSVLKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYC 1405
            +RLGHPH  V+ SV + CN P I     DFC  CC+GK H+LPSN S TVY +P ELIY 
Sbjct: 407  SRLGHPHNDVIKSVFRLCNFPIINKTASDFCTPCCLGKSHKLPSNSSKTVYHTPFELIYS 466

Query: 1404 DLWGPAPMSSSMGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKS 1225
            DLWGPAP++S  GY+YY++FVDA++RFTWI+ LK+K+  L  FK F  +++NQF   IK+
Sbjct: 467  DLWGPAPITSDNGYQYYVTFVDAHTRFTWIFLLKRKAHTLDVFKQFHAMIQNQFQLPIKA 526

Query: 1224 FQTDWGGEFR 1195
             QTDWGGEFR
Sbjct: 527  IQTDWGGEFR 536



 Score =  241 bits (614), Expect(2) = e-135
 Identities = 107/178 (60%), Positives = 138/178 (77%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + YLA  G+ HRLICPHTHHQNGVVERKHRHIV++GL++L+QA +P+++WDHAF T+VYL
Sbjct: 539  TSYLAQNGIQHRLICPHTHHQNGVVERKHRHIVELGLTMLAQAHLPMQFWDHAFLTSVYL 598

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS   +N +P+  L++++PDYNFL++FGCSCFP LRPY+  K QFR+ EC+FLGYS
Sbjct: 599  INRLPSSSIQNDVPFRKLFHQLPDYNFLRIFGCSCFPHLRPYNKNKLQFRSQECVFLGYS 658

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSSPTANTYFTLPPLQMPNQPP 657
            +SHKGYKCL  TGR+FI KDV+F ET FPY  LF   ++        +P +    QPP
Sbjct: 659  TSHKGYKCLAPTGRIFISKDVVFCETRFPYPSLFPAPATNPLTPSIPVPLVITNPQPP 716


>gb|PNY02430.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Trifolium pratense]
          Length = 1064

 Score =  263 bits (673), Expect(2) = e-134
 Identities = 144/316 (45%), Positives = 182/316 (57%), Gaps = 13/316 (4%)
 Frame = -1

Query: 2100 AGPSFATSNQ-LGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPS 1924
            A PS  TSN    D+ AS H++    N    T   G D +++GNG GLPI S  +   PS
Sbjct: 382  AAPS--TSNSWFPDSGASFHVTGDSRNLQQLTPFEGHDQIYIGNGQGLPILSSGSSTFPS 439

Query: 1923 PLNPKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQG 1744
            P +P   L   N+L+VP + KNL+S+ +F  DN  +F F  N C  KSQA+ +TLL+GQ 
Sbjct: 440  PTHPHLNLTLNNLLHVPHITKNLISVSQFCKDNSVYFVFTSNECLVKSQANNATLLQGQV 499

Query: 1743 TKDGLYHLPGIY----------SAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGA 1594
              DGLY  P I            ++                 TVA+ P   +  T ++  
Sbjct: 500  GSDGLYEFPAIRLHTGKPPLVPKSLSSNSSMSVAKFPSVNSLTVANNP---VCITQNSQY 556

Query: 1593 LWHNRLGHPHITVLNSVLKSCNKPTIAMNK--RDFCVACCMGKLHRLPSNISDTVYSSPL 1420
            +WH RLGHPH   L  VL+ C  P    NK    FC ACCMGK H+L S  S T Y+ PL
Sbjct: 557  MWHLRLGHPHSNTLKLVLQHCKIP-FNSNKDVSTFCTACCMGKAHKLHSLPSHTQYTHPL 615

Query: 1419 ELIYCDLWGPAPMSSSMGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFN 1240
            EL++ DLWGP+P  S++GY YYI+FVDAYSRFTWIY LK KSDA   FK FK +VE QF 
Sbjct: 616  ELVFSDLWGPSPQPSTLGYNYYITFVDAYSRFTWIYLLKSKSDAFIIFKQFKAMVELQFG 675

Query: 1239 CTIKSFQTDWGGEFRP 1192
             ++K+ QTDWGGEFRP
Sbjct: 676  HSLKALQTDWGGEFRP 691



 Score =  248 bits (633), Expect(2) = e-134
 Identities = 119/200 (59%), Positives = 149/200 (74%), Gaps = 18/200 (9%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            +K+L DLGVIHRLICPHTHHQNGVVERKHRHIVD+GL+LLSQAS+P+ YWD+AF TAVYL
Sbjct: 693  TKFLKDLGVIHRLICPHTHHQNGVVERKHRHIVDLGLTLLSQASLPLSYWDYAFLTAVYL 752

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS      IPY+ L+++ PDY FLKVFGC+CFPLLRPY++ K  +R+ EC+FLGYS
Sbjct: 753  INRLPSAPLDFKIPYTLLFHQDPDYKFLKVFGCACFPLLRPYNTHKLDYRSHECLFLGYS 812

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSS--PTANTYFTLPPL------- 678
             SHKGY+CL   GR+FI KDV+FNE+ FP++ LF+   S  P+ ++  TL PL       
Sbjct: 813  PSHKGYRCLSPNGRLFISKDVIFNESRFPFIDLFTSPHSVVPSKSSAVTLSPLVHHPSHS 872

Query: 677  ---------QMPNQPPSTAT 645
                      +PN PP +A+
Sbjct: 873  PSPTSSPSPSIPNSPPPSAS 892



 Score =  188 bits (477), Expect = 5e-46
 Identities = 87/141 (61%), Positives = 108/141 (76%), Gaps = 1/141 (0%)
 Frame = -2

Query: 455  LVH-PQNTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALIT 279
            +VH P N HPM+TRAK G  QPRL P       EP +V QAL  P WK AMQ EYDAL+ 
Sbjct: 924  VVHKPSNLHPMLTRAKDGFTQPRLEPRLLLTHIEPASVKQALQVPEWKTAMQAEYDALLA 983

Query: 278  NGTWSLVHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVI 99
            N TW+LV LP+ + +IG KWVFR K+N DG+LNKYKARLVAKGF+QR G D++ETF+PV+
Sbjct: 984  NNTWTLVPLPSDRSSIGCKWVFRVKQNSDGTLNKYKARLVAKGFHQRHGIDFTETFSPVV 1043

Query: 98   KPITVRIILTLALTNGWSIKQ 36
            KP+T+R+ILTLA+T  WS++Q
Sbjct: 1044 KPVTIRLILTLAITQKWSLQQ 1064


>gb|KYP46257.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1408

 Score =  270 bits (690), Expect(2) = e-133
 Identities = 125/300 (41%), Positives = 180/300 (60%)
 Frame = -1

Query: 2094 PSFATSNQLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPLN 1915
            P    +N   D+ AS+H++N+  N    T   G D + +GNG GL I+S       SP+N
Sbjct: 341  PGACNNNWYPDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPIN 400

Query: 1914 PKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKD 1735
            PK      N+L+VP + KNL+S+ +F  DN  +F+FHP+ C  KSQ     LL+G    D
Sbjct: 401  PKFQFALNNLLFVPSITKNLISVSQFSKDNSVYFEFHPHICLVKSQDTNEVLLQGSVGSD 460

Query: 1734 GLYHLPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGALWHNRLGHPHITV 1555
            GLY  P +                     T A++P +         A WH+RLGHP++ V
Sbjct: 461  GLYKFPALLPNPSTQSVQQQQLARIFSVNTAATSPVSF--------ATWHSRLGHPNVDV 512

Query: 1554 LNSVLKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSS 1375
            +  V ++ N   ++ NK +FC  CC+GK HRLPSN+S T+Y++P +L+Y DLWGPAP++S
Sbjct: 513  MKHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLWGPAPVTS 572

Query: 1374 SMGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFR 1195
            + GY+YY++FVDA++RFTWIY LK K+     FK F  +V+NQ++  IK+ QTDWGGE+R
Sbjct: 573  TCGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYR 632



 Score =  236 bits (603), Expect(2) = e-133
 Identities = 105/180 (58%), Positives = 139/180 (77%)
 Frame = -2

Query: 1184 YLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYLIN 1005
            YL ++G+ HRLICPHTHHQNGV ERKHRHIV++GL+L++QA +P+++WDH+F TAVYLIN
Sbjct: 637  YLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAVYLIN 696

Query: 1004 RLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYSSS 825
            RLPS   +N +PY  L+++ PDY  L++FGCSCFP LRPY+  K QFR+ EC+FLGYS+S
Sbjct: 697  RLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTS 756

Query: 824  HKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSSPTANTYFTLPPLQMPNQPPSTAT 645
            HKGYKCL + GR++I KDV+FNET FPY  LFS + +  +    ++P    P   P+ AT
Sbjct: 757  HKGYKCLAADGRLYISKDVVFNETKFPYKDLFSSSKASDSQLPISVPLTINPTPTPTHAT 816



 Score =  209 bits (533), Expect = 5e-53
 Identities = 99/150 (66%), Positives = 118/150 (78%)
 Frame = -2

Query: 455  LVHPQNTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITN 276
            ++HP N HPM TRAK GIV+PRL P       EP T  QAL++P W AAMQ EY+AL+ N
Sbjct: 863  IIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHN 922

Query: 275  GTWSLVHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIK 96
             TWSLV LP  + AIG KWVFR KENP+GS+ KYKARLVAKGFNQ+ G DY ETF+PVIK
Sbjct: 923  NTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIK 982

Query: 95   PITVRIILTLALTNGWSIKQIDINNAFLHG 6
            P+TVR+ILTLALT+ W I+Q+D+NNAFL+G
Sbjct: 983  PVTVRLILTLALTHRWPIQQLDVNNAFLNG 1012


>gb|KYP61341.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1073

 Score =  269 bits (688), Expect(2) = e-133
 Identities = 125/299 (41%), Positives = 181/299 (60%)
 Frame = -1

Query: 2091 SFATSNQLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPLNP 1912
            S + +N   D+ AS+H++N+  N    T   G D + +GNG GL I+S       SP+NP
Sbjct: 7    SSSNNNWYPDSGASNHVTNVSQNIHQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSPINP 66

Query: 1911 KHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKDG 1732
            K      N+L+VP + KNL+S+ +F  DN  +F+FHP+ C  KSQ     LL+G    DG
Sbjct: 67   KFQFALNNLLFVPSITKNLISVSQFSKDNSVYFEFHPHICLVKSQDTNEVLLQGSVGSDG 126

Query: 1731 LYHLPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGALWHNRLGHPHITVL 1552
            LY  P +                     T A++P +         A WH+RLGHP++ V+
Sbjct: 127  LYKFPALLPNPSTQSVQQQQLARIFSVNTAATSPVSF--------ATWHSRLGHPNVDVM 178

Query: 1551 NSVLKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSSS 1372
              V ++ N   ++ NK +FC  CC+GK HRLPSN+S T+Y++P +L+Y DLWGPAP++S+
Sbjct: 179  KHVSRNYNIQLVSNNKSNFCTPCCLGKSHRLPSNLSRTIYNTPFDLVYSDLWGPAPVTST 238

Query: 1371 MGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFR 1195
             GY+YY++FVDA++RFTWIY LK K+     FK F  +V+NQ++  IK+ QTDWGGE+R
Sbjct: 239  CGYQYYVTFVDAHTRFTWIYLLKSKAQTFNVFKQFHAMVKNQYHHPIKALQTDWGGEYR 297



 Score =  236 bits (603), Expect(2) = e-133
 Identities = 105/180 (58%), Positives = 139/180 (77%)
 Frame = -2

Query: 1184 YLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYLIN 1005
            YL ++G+ HRLICPHTHHQNGV ERKHRHIV++GL+L++QA +P+++WDH+F TAVYLIN
Sbjct: 302  YLNEVGIQHRLICPHTHHQNGVAERKHRHIVELGLTLMAQAELPMQFWDHSFLTAVYLIN 361

Query: 1004 RLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYSSS 825
            RLPS   +N +PY  L+++ PDY  L++FGCSCFP LRPY+  K QFR+ EC+FLGYS+S
Sbjct: 362  RLPSSSIQNAVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYSTS 421

Query: 824  HKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSSPTANTYFTLPPLQMPNQPPSTAT 645
            HKGYKCL + GR++I KDV+FNET FPY  LFS + +  +    ++P    P   P+ AT
Sbjct: 422  HKGYKCLAADGRLYISKDVVFNETKFPYKDLFSSSKASDSQLPISVPLTINPTPTPTHAT 481



 Score =  209 bits (533), Expect = 3e-53
 Identities = 99/150 (66%), Positives = 118/150 (78%)
 Frame = -2

Query: 455 LVHPQNTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITN 276
           ++HP N HPM TRAK GIV+PRL P       EP T  QAL++P W AAMQ EY+AL+ N
Sbjct: 528 IIHPHNVHPMTTRAKDGIVKPRLQPTLLLTQVEPKTTKQALSNPTWSAAMQTEYNALLHN 587

Query: 275 GTWSLVHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIK 96
            TWSLV LP  + AIG KWVFR KENP+GS+ KYKARLVAKGFNQ+ G DY ETF+PVIK
Sbjct: 588 NTWSLVPLPPHRTAIGCKWVFRVKENPNGSVQKYKARLVAKGFNQQFGFDYHETFSPVIK 647

Query: 95  PITVRIILTLALTNGWSIKQIDINNAFLHG 6
           P+TVR+ILTLALT+ W I+Q+D+NNAFL+G
Sbjct: 648 PVTVRLILTLALTHRWPIQQLDVNNAFLNG 677


>gb|PNX93462.1| histone deacetylase, partial [Trifolium pratense]
          Length = 1489

 Score =  258 bits (658), Expect(2) = e-132
 Identities = 135/298 (45%), Positives = 177/298 (59%), Gaps = 7/298 (2%)
 Frame = -1

Query: 2064 DTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPLNPKHLLHYKNI 1885
            D+ AS+H++  P N    +  S  D +F+GNG  L + S  + + PSP + +  L   N+
Sbjct: 416  DSGASYHVTADPKNIQQHSPFSATDQLFMGNGHCLTVLSTGSSVFPSPNHTQTHLALHNL 475

Query: 1884 LYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKDGLYHLPGIYS 1705
            L+VP + KNL+S+ +F  DN+ FF+FH N C  KSQ     LL+G    DGLY    I  
Sbjct: 476  LHVPTITKNLISVSQFAKDNNVFFEFHANHCLVKSQDTKEILLQGNVGADGLYSFSNI-- 533

Query: 1704 AVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGA--LWHNRLGHPHITVLNSVLKSC 1531
            ++                 +V S   NV S + S  +  +WH RLGHP+   L S LK C
Sbjct: 534  SIIPAKSSTASTLHRPIVCSVTSNS-NVSSSSVSLNSQHMWHLRLGHPNNQTLKSALKLC 592

Query: 1530 NKPTIAMNKRD-----FCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSSSMG 1366
            N   I+    D      C ACCMGK HRL S  S TVYS PLEL++ DLWGPAP +SS+G
Sbjct: 593  N---ISFQNNDNDVSLLCTACCMGKAHRLHSPPSQTVYSHPLELVFSDLWGPAPSTSSLG 649

Query: 1365 YRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFRP 1192
            Y YYI+F+DA+S++TWIY LK KS+AL  FK FKT+ E Q  C++KS QTDWGGEFRP
Sbjct: 650  YHYYITFIDAFSKYTWIYLLKSKSEALTVFKQFKTMAELQLGCSLKSLQTDWGGEFRP 707



 Score =  245 bits (625), Expect(2) = e-132
 Identities = 118/183 (64%), Positives = 144/183 (78%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            +K L++LGV HRLICPHTHHQNGVVERKHRH+VD+GL+LLSQA++PI YWDHAF TAV+L
Sbjct: 709  TKILSELGVSHRLICPHTHHQNGVVERKHRHVVDLGLTLLSQANLPITYWDHAFLTAVHL 768

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLP+      IPY+ L+NKIPDY+ LKVFGC+CFPLLRPY+S K  FR+ ECIF+GYS
Sbjct: 769  INRLPTAALSFKIPYTVLFNKIPDYHSLKVFGCACFPLLRPYNSHKLDFRSHECIFMGYS 828

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSSPTANTYFTLPPLQMPNQPPST 651
            ++HKGYKCL  +G++FI KDVLFNE  FPY  LF    SP  N   T+ P  +P+ P ST
Sbjct: 829  NTHKGYKCLSPSGKIFISKDVLFNEYRFPYQFLF---PSPMKN---TILPSPVPDIPIST 882

Query: 650  ATV 642
              +
Sbjct: 883  LPI 885



 Score =  190 bits (483), Expect = 1e-46
 Identities = 91/145 (62%), Positives = 114/145 (78%)
 Frame = -2

Query: 440  NTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTWSL 261
            NTH M TR+K GIV P+ +P      TEP TV QAL+ P W  AM+ E+DAL  N TW+L
Sbjct: 952  NTHTMQTRSKSGIVLPKQNPTLLLTHTEPKTVKQALSIPQWYNAMKDEFDALQRNQTWTL 1011

Query: 260  VHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPITVR 81
            V LP  + AIG KWVFRTKENPDGS+NKYKARLVAKGF+Q+ G D++ETF+PVIKP+T+R
Sbjct: 1012 VSLPPNRSAIGCKWVFRTKENPDGSINKYKARLVAKGFHQKPGFDFNETFSPVIKPVTIR 1071

Query: 80   IILTLALTNGWSIKQIDINNAFLHG 6
            +IL+LA++  W +KQ+DINNAFL+G
Sbjct: 1072 LILSLAISYKWPLKQLDINNAFLNG 1096


>dbj|GAU34785.1| hypothetical protein TSUD_205890 [Trifolium subterraneum]
          Length = 888

 Score =  264 bits (675), Expect(2) = e-132
 Identities = 142/308 (46%), Positives = 183/308 (59%), Gaps = 6/308 (1%)
 Frame = -1

Query: 2097 GPSFATSNQLG---DTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIP 1927
            GPS  TSN      D+ AS H++    N    T  +G +H+++GNG  LPI S  + I  
Sbjct: 199  GPS--TSNPPSWYPDSGASFHVTGDSRNIQEPTPFAGSEHIYMGNGQSLPIISSGSSIFN 256

Query: 1926 SPLNPKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQ 1747
            +P + +  L   N+L+VP + KNL+S+ +F  DN  +F+FHPN+C  KSQA    LL+G 
Sbjct: 257  APNHTQTHLILNNLLHVPSITKNLISVSQFAKDNAVYFEFHPNYCLVKSQATNKVLLQGN 316

Query: 1746 GTKDGLYHLPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGALWHNRLGHP 1567
               DGLY    I  A                +   +ST  N  S + ++  LWH RLGHP
Sbjct: 317  VGTDGLYSFSHISIAPAKSSSLLSSFKPSVFNVHSSSTVSNS-SLSFNSLYLWHLRLGHP 375

Query: 1566 HITVLNSVLKSCNKPTIAMNKRD---FCVACCMGKLHRLPSNISDTVYSSPLELIYCDLW 1396
            +   L S LK CN P I  NK D   FC ACCMGK HRL +  S T Y+ PLEL++ DLW
Sbjct: 376  NDQTLKSTLKQCNIPFIN-NKHDVSNFCTACCMGKAHRLYAPASQTTYTQPLELVFSDLW 434

Query: 1395 GPAPMSSSMGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQT 1216
            GP+P  SS+G+ YYISF+DAYSR+TWIY LK KSDA   FK FKT+ E Q   ++K+ QT
Sbjct: 435  GPSPTVSSLGFHYYISFIDAYSRYTWIYLLKSKSDAFTIFKQFKTMAELQLGHSLKALQT 494

Query: 1215 DWGGEFRP 1192
            DWGGEFRP
Sbjct: 495  DWGGEFRP 502



 Score =  238 bits (606), Expect(2) = e-132
 Identities = 111/187 (59%), Positives = 141/187 (75%), Gaps = 4/187 (2%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + YLA+ G+IHRLICPHTHHQNGVVERKHRH+VD+GL+LLSQA++P+ YWDH+F TAV+L
Sbjct: 504  TSYLANEGIIHRLICPHTHHQNGVVERKHRHVVDLGLTLLSQANLPLTYWDHSFLTAVHL 563

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLP+      IPY+ L++K PD+N  KVFG +CFPLLRPY+S KF FR+ ECIFLGYS
Sbjct: 564  INRLPTASLNFKIPYTTLFHKDPDFNSFKVFGAACFPLLRPYNSHKFDFRSHECIFLGYS 623

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLF----SVTSSPTANTYFTLPPLQMPNQ 663
            ++HKGYKCL  TGR+++ KDV+FNE  FPY  LF    S  S+P  +   +  P+   NQ
Sbjct: 624  TTHKGYKCLSPTGRIYVSKDVIFNEQRFPYKILFPTQTSSLSTPIQDVPLSTLPVGTHNQ 683

Query: 662  PPSTATV 642
               T  +
Sbjct: 684  TEITKVI 690



 Score =  187 bits (476), Expect = 3e-46
 Identities = 90/146 (61%), Positives = 112/146 (76%)
 Frame = -2

Query: 440  NTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTWSL 261
            N HPM TRAK GI  P+  P      TEP TV QAL  P W +AM  E++AL  N TW+L
Sbjct: 726  NNHPMKTRAKSGISLPKPPPTLLLTHTEPRTVKQALQDPKWLSAMTTEFEALKNNHTWNL 785

Query: 260  VHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPITVR 81
            V LP  + AIG KWVFRTKENPDG++NKYKARLVAKGF+Q +G D++ETF+PVIKPIT+R
Sbjct: 786  VPLPQNRTAIGCKWVFRTKENPDGTINKYKARLVAKGFHQIQGFDFNETFSPVIKPITIR 845

Query: 80   IILTLALTNGWSIKQIDINNAFLHGL 3
            +IL+LA++  W +KQ+D+NNAFL+GL
Sbjct: 846  LILSLAVSYNWPLKQLDVNNAFLNGL 871


>dbj|GAU32278.1| hypothetical protein TSUD_62940 [Trifolium subterraneum]
          Length = 1409

 Score =  257 bits (656), Expect(2) = e-131
 Identities = 134/294 (45%), Positives = 170/294 (57%), Gaps = 3/294 (1%)
 Frame = -1

Query: 2064 DTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPLNPKHLLHYKNI 1885
            D+ AS H++    +    T  +G DH+++GNG  LPI S  + +  SP +    L   N+
Sbjct: 361  DSGASFHVTGDSRHIQEPTPFAGSDHIYMGNGQSLPIISSGSSVFNSPNHTHTHLILNNL 420

Query: 1884 LYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKDGLYHLPGIYS 1705
            L+VP + KNL+S+ +F  DN  +F+FHPN C  KSQA  + LL+G    DGLY    I  
Sbjct: 421  LHVPSITKNLISVSQFAKDNAVYFEFHPNLCLVKSQATNAVLLQGNVGSDGLYSFSNISI 480

Query: 1704 AVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGALWHNRLGHPHITVLNSVLKSCNK 1525
            A                    +ST  N      S   LWH R GHP+   L S LK CN 
Sbjct: 481  APAKFSSLHSSFKPSVFTIQSSSTSCNSNLSCNSL-YLWHLRPGHPNDQTLKSTLKQCNI 539

Query: 1524 PTIAMNKRD---FCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSSSMGYRYY 1354
            P    NK D   FC  CCMGK HRL S+ S T Y+ PLEL++ DL GP+P  SS+G+ YY
Sbjct: 540  P-FTNNKSDVSNFCTTCCMGKAHRLHSSASKTTYTHPLELVFSDLRGPSPSVSSLGFHYY 598

Query: 1353 ISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFRP 1192
            I+F+DAYSR+TWIY LK KSDA P FK FKT+ E Q   ++KS QTDWGGEFRP
Sbjct: 599  ITFIDAYSRYTWIYLLKSKSDAFPIFKQFKTMAELQLGHSLKSLQTDWGGEFRP 652



 Score =  244 bits (623), Expect(2) = e-131
 Identities = 111/180 (61%), Positives = 141/180 (78%), Gaps = 4/180 (2%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + YL +LG++HRLICPHTHHQNGVVERKHRH+VD+GL+LLSQA++P+ YWDHAF TAV+L
Sbjct: 654  TSYLDNLGIVHRLICPHTHHQNGVVERKHRHVVDLGLTLLSQANLPLTYWDHAFLTAVHL 713

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLP+      +PY+ L+ K PDYN LKVFG +CFPL+RPY+S KF FR+ ECIFLGYS
Sbjct: 714  INRLPTASLNFKVPYTTLFQKDPDYNSLKVFGSACFPLIRPYNSHKFDFRSHECIFLGYS 773

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLF----SVTSSPTANTYFTLPPLQMPNQ 663
            ++HKGYKCL  TGR+++ KDV+FNE+ FPY  LF    S  S+PT +   T  P+   N+
Sbjct: 774  TTHKGYKCLSPTGRIYVSKDVMFNESRFPYESLFPTPNSALSNPTPDIPLTTLPIGTQNE 833



 Score =  182 bits (462), Expect = 5e-44
 Identities = 85/145 (58%), Positives = 111/145 (76%)
 Frame = -2

Query: 440  NTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTWSL 261
            NTHPM TR K G++ P+++P      TEP T  QAL    W +AM  E++AL  N TW+L
Sbjct: 897  NTHPMQTRVKSGLILPKINPKLLLTHTEPRTTKQALQDRKWLSAMTEEFEALKRNKTWTL 956

Query: 260  VHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPITVR 81
            V LP  +  IG KWVFRTKENPDG++NKYKARLVAKGF+Q +G D++ETF+PVIKPIT+R
Sbjct: 957  VPLPNNRDVIGCKWVFRTKENPDGTINKYKARLVAKGFHQVQGFDFNETFSPVIKPITIR 1016

Query: 80   IILTLALTNGWSIKQIDINNAFLHG 6
            +IL+LA++  W +KQ+D+NNAFL+G
Sbjct: 1017 LILSLAVSYKWPLKQLDVNNAFLNG 1041


>gb|KYP42260.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 623

 Score =  257 bits (656), Expect(2) = e-131
 Identities = 127/237 (53%), Positives = 153/237 (64%), Gaps = 5/237 (2%)
 Frame = -1

Query: 1887 ILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKDGLYHLPGIY 1708
            +L+V  + KNL+S+ KF  DN  +F+FH   C  KSQ D S LL+G  T DGLY  P + 
Sbjct: 1    MLHVSYITKNLVSVSKFAHDNQVYFEFHSTHCLVKSQVDHSVLLEGHLTADGLYSFPHLS 60

Query: 1707 SAVXXXXXXXXXXXXXXXHATVASTPHNVISHTT-----STGALWHNRLGHPHITVLNSV 1543
             +                 A   +    V S T      +T +LWHNRLGHP  +VL +V
Sbjct: 61   FSCCQPQHLPLSIKPSSSIALSTTCTSRVCSDTVQSPTPTTLSLWHNRLGHPCFSVLQNV 120

Query: 1542 LKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSSSMGY 1363
            LK C  P    N+  FCVACCMGK HRLPS+ S TVYS+PLEL++CDLWGP PM SSMGY
Sbjct: 121  LKFCKIPVSNKNEVQFCVACCMGKSHRLPSSSSTTVYSTPLELLFCDLWGPTPMLSSMGY 180

Query: 1362 RYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFRP 1192
             YY+SFVDAYSRFTWIYFLK KS+AL  FK F+ + + QFN  IKSFQ+DWGGEFRP
Sbjct: 181  HYYMSFVDAYSRFTWIYFLKNKSEALTIFKQFQAMAKLQFNHKIKSFQSDWGGEFRP 237



 Score =  242 bits (618), Expect(2) = e-131
 Identities = 114/204 (55%), Positives = 139/204 (68%), Gaps = 21/204 (10%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            ++ L  LG+ HRLICPHTHHQNGVVERKHRHI++MGL+LLSQA +P+KYWDH FHT VYL
Sbjct: 239  TQILTSLGITHRLICPHTHHQNGVVERKHRHIIEMGLTLLSQAFLPMKYWDHVFHTTVYL 298

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS      +PY  LY+K  DY F+KVFGC+C+PLL PY++ K  FR+ EC+FLGYS
Sbjct: 299  INRLPSLSHNKIVPYQVLYSKDLDYTFIKVFGCACYPLLTPYNTNKLHFRSTECVFLGYS 358

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLF---------------------SVTSS 714
            SSHKGYKCLD+ G +FI KDV+FNE  FPY  L                       V S+
Sbjct: 359  SSHKGYKCLDTNGLLFISKDVIFNEQRFPYQHLIPSTTSVSNSSTNFPLGVLSSNDVAST 418

Query: 713  PTANTYFTLPPLQMPNQPPSTATV 642
             T+N+  +  PL     PPST+ V
Sbjct: 419  STSNSSSSSSPLSAHTLPPSTSNV 442



 Score =  196 bits (498), Expect = 3e-50
 Identities = 93/145 (64%), Positives = 113/145 (77%)
 Frame = -2

Query: 440 NTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTWSL 261
           N HPM TR+K GIV+P+LHP      TEP ++ QAL+SP WK  M +EYDALI N TW L
Sbjct: 441 NVHPMQTRSKSGIVRPKLHPTLLLTTTEPTSLKQALSSPSWKTVMSLEYDALIKNQTWKL 500

Query: 260 VHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPITVR 81
           V LP+ +  IG KWV+  KEN DG++NKYKARLVAKGF+Q+ G DYSETF+PVIKPIT+R
Sbjct: 501 VPLPSNRTLIGCKWVYCIKENHDGTINKYKARLVAKGFHQKFGSDYSETFSPVIKPITIR 560

Query: 80  IILTLALTNGWSIKQIDINNAFLHG 6
           +ILTL +T  W IKQ+DINNAFL+G
Sbjct: 561 VILTLVVTYHWPIKQVDINNAFLNG 585


>gb|KYP68392.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1085

 Score =  261 bits (667), Expect(2) = e-129
 Identities = 126/302 (41%), Positives = 175/302 (57%)
 Frame = -1

Query: 2100 AGPSFATSNQLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSP 1921
            A  S   +N   D+ AS+H++N+  N    T   G D + +GNG GL I+S       SP
Sbjct: 211  ANTSVCNNNWYPDSGASNHVTNVSQNIQQFTPFEGPDQIHVGNGQGLHINSTGVTTFHSP 270

Query: 1920 LNPKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGT 1741
            +NPK      N+L+V  + KNL+S+ +F  DN  +F+FHP  C  KSQ     LL+G   
Sbjct: 271  INPKFQFALNNLLFVLSITKNLISVSQFSKDNSVYFEFHPYICLVKSQDTKEVLLQGSVG 330

Query: 1740 KDGLYHLPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGALWHNRLGHPHI 1561
             DGLY  P +                     T A +    +S  T     WH+RLGHP++
Sbjct: 331  PDGLYQFPALLPTPSTQSVQQVQPARSFSVNTAAKS---YVSFAT-----WHSRLGHPNV 382

Query: 1560 TVLNSVLKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPM 1381
             V+  V ++ N   +  NK DFC  CC+GK HRLPSN+S  VY++P +L+Y DLWGPAP+
Sbjct: 383  DVMKHVSRNFNIQLVTNNKSDFCTPCCLGKSHRLPSNLSKIVYNTPFDLVYNDLWGPAPV 442

Query: 1380 SSSMGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGE 1201
            +S+ GY+YY++FVDA++RFTWIY LK K+     FK F  +V NQ++  IK+ QTDWGGE
Sbjct: 443  TSTCGYQYYVTFVDAHTRFTWIYLLKNKAQTFNVFKQFHAMVNNQYHHPIKALQTDWGGE 502

Query: 1200 FR 1195
            +R
Sbjct: 503  YR 504



 Score =  231 bits (589), Expect(2) = e-129
 Identities = 104/182 (57%), Positives = 138/182 (75%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + YL ++G+ HRLIC HTHHQNGVVERKHRHIV++GL+LL+QA +P+++WDHAF T VYL
Sbjct: 507  TNYLNEVGIQHRLICRHTHHQNGVVERKHRHIVELGLTLLAQAELPMQFWDHAFLTGVYL 566

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS   +N +PY  L+++ PDY  L++FGCSCFP LRPY+  K QFR+ EC+FLGYS
Sbjct: 567  INRLPSSSIQNVVPYHKLFHQPPDYLSLRIFGCSCFPHLRPYNKHKLQFRSQECVFLGYS 626

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSSPTANTYFTLPPLQMPNQPPST 651
            +SHKGYKCL +  R++I  DV+FNET FPY  LFS +++  ++   ++P    P   PS 
Sbjct: 627  TSHKGYKCLAADERLYISNDVVFNETKFPYKELFSSSTASVSHHPISVPLTINPTPTPSH 686

Query: 650  AT 645
             T
Sbjct: 687  ET 688



 Score =  150 bits (378), Expect = 1e-33
 Identities = 74/118 (62%), Positives = 91/118 (77%), Gaps = 1/118 (0%)
 Frame = -2

Query: 356  PYTVSQALASPHWK-AAMQVEYDALITNGTWSLVHLPAGKKAIGNKWVFRTKENPDGSLN 180
            P   S +L S  +   A   EY+AL+ N TWSLV LP  + AIG KWVFR KENP+G++ 
Sbjct: 695  PLATSPSLTSDSYTPGAAATEYNALLHNDTWSLVPLPPHRTAIGCKWVFRVKENPNGTVQ 754

Query: 179  KYKARLVAKGFNQREGCDYSETFAPVIKPITVRIILTLALTNGWSIKQIDINNAFLHG 6
            KYKARLVAKGFNQ+ G DY ETF+PVIKP+TVR+ILTLALT+ W I+Q+D+NNAFL+G
Sbjct: 755  KYKARLVAKGFNQQFGFDYHETFSPVIKPVTVRLILTLALTHRWPIQQLDVNNAFLNG 812


>gb|PNX91972.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 1516

 Score =  248 bits (634), Expect(2) = e-128
 Identities = 131/306 (42%), Positives = 177/306 (57%), Gaps = 6/306 (1%)
 Frame = -1

Query: 2094 PSFATS-NQLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPL 1918
            PS +TS +   D+ AS H++    N    +  +G +H+++GNG  L I S  + +  SP 
Sbjct: 424  PSASTSPSWYPDSGASFHVTGDSRNIQQPSPFAGAEHIYMGNGQSLKIFSSGSSVFTSPN 483

Query: 1917 NPKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTK 1738
            + +  L    +L+VP + KNL+S+ +F  DN  +F+FHPNFC  KSQA  + LL+G    
Sbjct: 484  HTQTHLTLNKLLHVPSITKNLISVSQFAKDNAVYFEFHPNFCVVKSQATNAVLLQGSVGS 543

Query: 1737 DGLYHLPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGAL--WHNRLGHPH 1564
            DGLY    I  ++                 +V+S   N+ S   S  +L  WH RLGHP+
Sbjct: 544  DGLYSFSNI--SIEPAKPSTLHSSFQPSVCSVSSNS-NLCSSNLSFNSLYLWHLRLGHPN 600

Query: 1563 ITVLNSVLKSCNKPTIAMNKRD---FCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWG 1393
               L   L  CN P    NK D    C ACCMGK HRL S+ S T Y+ PLEL++ DLWG
Sbjct: 601  DQTLKFTLNQCNIP-FTNNKSDVSALCTACCMGKAHRLHSSASQTTYNHPLELVFSDLWG 659

Query: 1392 PAPMSSSMGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTD 1213
            P+P  SS+G+ YYI+F+DA+SR+TWIY LK KSDA   FK FK + E Q    +K+ QTD
Sbjct: 660  PSPTVSSLGFHYYITFIDAFSRYTWIYLLKSKSDAFTVFKQFKAMAELQLGYPLKALQTD 719

Query: 1212 WGGEFR 1195
            WGGEFR
Sbjct: 720  WGGEFR 725



 Score =  243 bits (620), Expect(2) = e-128
 Identities = 113/186 (60%), Positives = 142/186 (76%), Gaps = 4/186 (2%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + YL DLG+ HRLICPHTHHQNGVVERKHRH+VD+GL+LLSQA++P+KYWDHAF TAV+L
Sbjct: 728  TSYLTDLGITHRLICPHTHHQNGVVERKHRHVVDLGLTLLSQANLPLKYWDHAFLTAVHL 787

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLP+   +  IPY+ L+NK P++   KVFG +CFPLLRPY++ KF  R+ ECIFLGYS
Sbjct: 788  INRLPTASLQFKIPYTILFNKSPEFTSFKVFGSACFPLLRPYNAHKFDVRSHECIFLGYS 847

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSSPTANTYFTLP----PLQMPNQ 663
            ++HKGYKCL  TGR+F+ KDVLFNE  FPY  LFS   S  ++    +P    P+ + NQ
Sbjct: 848  NTHKGYKCLSPTGRIFVSKDVLFNEHRFPYKSLFSTQDSALSDITLDVPISTLPISIQNQ 907

Query: 662  PPSTAT 645
              +T T
Sbjct: 908  TITTNT 913



 Score =  186 bits (473), Expect = 2e-45
 Identities = 91/148 (61%), Positives = 114/148 (77%)
 Frame = -2

Query: 446  PQNTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTW 267
            P N H M TRAK GI+ PR++P      TEP TV QAL  P W  AM  E++AL  N TW
Sbjct: 972  PTNNHRMQTRAKSGII-PRINPKLLLTHTEPRTVKQALQDPKWLTAMTEEFEALKRNHTW 1030

Query: 266  SLVHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPIT 87
            +LV LP  + AIG KWVFRTKENPDG++NKYKARLVAKGF+Q +G D++ETF+PVIKPIT
Sbjct: 1031 TLVPLPKHRSAIGCKWVFRTKENPDGTINKYKARLVAKGFHQIQGFDFNETFSPVIKPIT 1090

Query: 86   VRIILTLALTNGWSIKQIDINNAFLHGL 3
            +R+IL+LA++  W +KQ+D+NNAFL+GL
Sbjct: 1091 IRLILSLAVSYKWPLKQLDVNNAFLNGL 1118


>gb|KYP61342.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1358

 Score =  254 bits (648), Expect(2) = e-128
 Identities = 126/297 (42%), Positives = 174/297 (58%)
 Frame = -1

Query: 2085 ATSNQLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPLNPKH 1906
            A S+ + D+ AS H++  P N        G D +F+GNG GL I+     I  SP+N + 
Sbjct: 296  ANSSWIPDSGASFHVTGEPQNIHQLEHFDGPDQIFIGNGQGLQINGSGTSIFISPINSQF 355

Query: 1905 LLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKDGLY 1726
              H  N+L+VP + KNLLS+ KF  DN  FF+FH N C  KSQ     LL+G    DGLY
Sbjct: 356  KFHLNNLLHVPLITKNLLSVSKFAKDNCVFFEFHANHCLVKSQDTNEVLLQGVVGADGLY 415

Query: 1725 HLPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGALWHNRLGHPHITVLNS 1546
              P +   V                  + S   N  S  +S+  +WH RLGHP+  VL  
Sbjct: 416  SFPHLKLQV------------------LDSFNFNKNSDVSSSSTMWHTRLGHPNSHVLKL 457

Query: 1545 VLKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSSSMG 1366
            VL  CN  +   +  +FC +CC+GK  RLPS+ S T+YS+PL++I+ DLWGP+ ++S  G
Sbjct: 458  VLTQCNLLSSNTHVTEFCSSCCVGKSRRLPSSASQTIYSAPLDVIFTDLWGPSHITSFSG 517

Query: 1365 YRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFR 1195
            Y YY++F+DA+S++TWIY LK K++ L  F+ FK + E QFN  IKS Q+DWGGE+R
Sbjct: 518  YLYYVAFIDAFSKYTWIYPLKSKAETLSVFQQFKAMAELQFNTKIKSVQSDWGGEYR 574



 Score =  237 bits (605), Expect(2) = e-128
 Identities = 112/185 (60%), Positives = 140/185 (75%), Gaps = 2/185 (1%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + +LA  G+ HR+ICPHTHHQNGVVERKHRHIV++GL+LL  AS+P+K+WD AF TAVYL
Sbjct: 577  TSFLATNGIQHRVICPHTHHQNGVVERKHRHIVEIGLTLLHHASLPLKFWDFAFTTAVYL 636

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS      +P++ L+NK PDY FL+ FGC+CFP LRPY S K  FR+ EC+FLGYS
Sbjct: 637  INRLPSAALNFNVPFTTLFNKSPDYKFLRTFGCACFPFLRPYASHKLNFRSQECVFLGYS 696

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLF--SVTSSPTANTYFTLPPLQMPNQPP 657
            +SHKGYKCL S+GR++I KDV+FNE  FPY  LF  S+T + +   YF L P   P  P 
Sbjct: 697  NSHKGYKCLSSSGRIYISKDVIFNEHRFPYTDLFQPSLTQNVSPCQYFNLNPDLSP--PC 754

Query: 656  STATV 642
            +T+TV
Sbjct: 755  TTSTV 759



 Score =  195 bits (495), Expect = 3e-48
 Identities = 92/145 (63%), Positives = 113/145 (77%)
 Frame = -2

Query: 440  NTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTWSL 261
            N HPM TR+K G   PR+HP      +EP TV QALA P+W +AMQ EY+AL+ N TW L
Sbjct: 816  NNHPMQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDL 875

Query: 260  VHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPITVR 81
            V LP+ +KA+G KWVFR KEN DGS++K KARLVAKGF+Q  G D+ ETF+PVIKPIT+R
Sbjct: 876  VSLPSDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIR 935

Query: 80   IILTLALTNGWSIKQIDINNAFLHG 6
            IILTLALTN W++ Q+D+NNAFL+G
Sbjct: 936  IILTLALTNNWNLFQLDVNNAFLNG 960


>gb|KYP67039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1279

 Score =  254 bits (648), Expect(2) = e-128
 Identities = 126/297 (42%), Positives = 174/297 (58%)
 Frame = -1

Query: 2085 ATSNQLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPLNPKH 1906
            A S+ + D+ AS H++  P N        G D +F+GNG GL I+     I  SP+N + 
Sbjct: 217  ANSSWIPDSGASFHVTGEPQNIHQLEHFDGPDQIFIGNGQGLQINGSGTSIFISPINSQF 276

Query: 1905 LLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKDGLY 1726
              H  N+L+VP + KNLLS+ KF  DN  FF+FH N C  KSQ     LL+G    DGLY
Sbjct: 277  KFHLNNLLHVPLITKNLLSVSKFAKDNCVFFEFHANHCLVKSQDTNEVLLQGVVGADGLY 336

Query: 1725 HLPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGALWHNRLGHPHITVLNS 1546
              P +   V                  + S   N  S  +S+  +WH RLGHP+  VL  
Sbjct: 337  SFPHLKLQV------------------LDSFNFNKNSDVSSSSTMWHTRLGHPNSHVLKL 378

Query: 1545 VLKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSSSMG 1366
            VL  CN  +   +  +FC +CC+GK  RLPS+ S T+YS+PL++I+ DLWGP+ ++S  G
Sbjct: 379  VLTQCNLLSSNTHVTEFCSSCCVGKSRRLPSSASQTIYSAPLDVIFTDLWGPSHITSFSG 438

Query: 1365 YRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFR 1195
            Y YY++F+DA+S++TWIY LK K++ L  F+ FK + E QFN  IKS Q+DWGGE+R
Sbjct: 439  YLYYVAFIDAFSKYTWIYPLKSKAETLSVFQQFKAMAELQFNTKIKSVQSDWGGEYR 495



 Score =  237 bits (605), Expect(2) = e-128
 Identities = 112/185 (60%), Positives = 140/185 (75%), Gaps = 2/185 (1%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + +LA  G+ HR+ICPHTHHQNGVVERKHRHIV++GL+LL  AS+P+K+WD AF TAVYL
Sbjct: 498  TSFLATNGIQHRVICPHTHHQNGVVERKHRHIVEIGLTLLHHASLPLKFWDFAFTTAVYL 557

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS      +P++ L+NK PDY FL+ FGC+CFP LRPY S K  FR+ EC+FLGYS
Sbjct: 558  INRLPSAALNFNVPFTTLFNKSPDYKFLRTFGCACFPFLRPYASHKLNFRSQECVFLGYS 617

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLF--SVTSSPTANTYFTLPPLQMPNQPP 657
            +SHKGYKCL S+GR++I KDV+FNE  FPY  LF  S+T + +   YF L P   P  P 
Sbjct: 618  NSHKGYKCLSSSGRIYISKDVIFNEHRFPYTDLFQPSLTQNVSPCQYFNLNPDLSP--PC 675

Query: 656  STATV 642
            +T+TV
Sbjct: 676  TTSTV 680



 Score =  195 bits (495), Expect = 3e-48
 Identities = 92/145 (63%), Positives = 113/145 (77%)
 Frame = -2

Query: 440  NTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTWSL 261
            N HPM TR+K G   PR+HP      +EP TV QALA P+W +AMQ EY+AL+ N TW L
Sbjct: 737  NNHPMQTRSKSGFHNPRIHPSLFLAHSEPKTVKQALADPNWFSAMQQEYNALMLNHTWDL 796

Query: 260  VHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPITVR 81
            V LP+ +KA+G KWVFR KEN DGS++K KARLVAKGF+Q  G D+ ETF+PVIKPIT+R
Sbjct: 797  VSLPSDRKAVGCKWVFRVKENADGSIDKLKARLVAKGFHQVHGFDFHETFSPVIKPITIR 856

Query: 80   IILTLALTNGWSIKQIDINNAFLHG 6
            IILTLALTN W++ Q+D+NNAFL+G
Sbjct: 857  IILTLALTNNWNLFQLDVNNAFLNG 881


>dbj|GAU29466.1| hypothetical protein TSUD_65010 [Trifolium subterraneum]
          Length = 1362

 Score =  263 bits (671), Expect(2) = e-128
 Identities = 145/340 (42%), Positives = 189/340 (55%), Gaps = 32/340 (9%)
 Frame = -1

Query: 2115 QAYAVAGPSFATSN----QLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHS 1948
            QAY     S A+S+       D+ A+HH++    N   A  LSG D V +GNG GLPI S
Sbjct: 328  QAYLTGNESTASSSFHNGWYPDSGATHHVTPDATNLMDAVSLSGTDQVHIGNGQGLPITS 387

Query: 1947 ISNEIIPSPLNPKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADG 1768
            + +    SPL P +     N+L+VP + KNL+S+ +F  DN+ +F+FH N C+ KSQ   
Sbjct: 388  VGSMTFSSPLCPFNSFKLNNLLHVPSITKNLVSVSQFAKDNNVYFEFHSNACYVKSQGSS 447

Query: 1767 STLLKGQGTKDGLYHLPGIY-----SAVXXXXXXXXXXXXXXXHATVASTP--------H 1627
              LL+G    DGLY     +     ++                 A +ASTP        +
Sbjct: 448  KILLRGHLGDDGLYQFDSPFQHNSEASASSQKSVGHSVVQANNDACLASTPSFSVFSQCN 507

Query: 1626 NVISHTTSTGA---------------LWHNRLGHPHITVLNSVLKSCNKPTIAMNKRDFC 1492
            NV S  TS  +               +WH+RLGHPH  VL  +LK CN+        DFC
Sbjct: 508  NVESVHTSISSGSSHSSSIQVPSLYKIWHSRLGHPHHEVLKYILKLCNQKLPNKTFSDFC 567

Query: 1491 VACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSSSMGYRYYISFVDAYSRFTWIY 1312
             ACC+GK+HRLPS  S   YS P EL++CDLWGPAP+ S  GY Y+++ VDAY+RFTWI+
Sbjct: 568  SACCLGKVHRLPSVSSTATYSKPFELVFCDLWGPAPVESFDGYSYFLTCVDAYTRFTWIF 627

Query: 1311 FLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFRP 1192
             LK KS  L TFK FK++VE Q+N  IKS QTD GGEFRP
Sbjct: 628  PLKLKSHTLLTFKNFKSMVELQYNLPIKSVQTDGGGEFRP 667



 Score =  228 bits (580), Expect(2) = e-128
 Identities = 111/190 (58%), Positives = 133/190 (70%), Gaps = 8/190 (4%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            +++L  LG+ HRL CPHTHHQNG VERKHRHIV+ GL+LL+ A +P+ +WDHAF TA YL
Sbjct: 669  TQFLTPLGITHRLTCPHTHHQNGSVERKHRHIVETGLTLLAHAKLPLHFWDHAFLTATYL 728

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPSP  +N  P+  L  K PDY FLK FGC+CFP LR Y++ K  F + ECIFLGYS
Sbjct: 729  INRLPSPTLENKSPFFLLNFKFPDYKFLKTFGCACFPFLRLYNTQKLDFHSKECIFLGYS 788

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLF------SVTS--SPTANTYFTLPPLQ 675
              HKGYKCLDSTGR+FI KDV+FNE+ FPY  LF      SV S   PT + + +LP   
Sbjct: 789  PVHKGYKCLDSTGRVFISKDVVFNESRFPYNDLFPSAPTPSVISHDDPTLSIFLSLPTHI 848

Query: 674  MPNQPPSTAT 645
              N  PS  T
Sbjct: 849  HDNPSPSPTT 858



 Score =  209 bits (531), Expect = 8e-53
 Identities = 97/150 (64%), Positives = 119/150 (79%)
 Frame = -2

Query: 452  VHPQNTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNG 273
            +HPQNTH M TR K GIVQPRLHP       EP +  QA+  P W  AMQ EY AL++N 
Sbjct: 936  IHPQNTHSMSTRGKLGIVQPRLHPTLLLTHVEPTSYKQAMQHPDWLKAMQSEYGALMSNN 995

Query: 272  TWSLVHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKP 93
            TWSLV LPA ++AIG KWVFR K+NPDGS+NKYKARLVAKGF+Q+ G DY+ETF+PV+KP
Sbjct: 996  TWSLVPLPANRQAIGCKWVFRLKQNPDGSINKYKARLVAKGFHQQLGFDYTETFSPVVKP 1055

Query: 92   ITVRIILTLALTNGWSIKQIDINNAFLHGL 3
            +TVR +LT+A+TN W I+Q+DINNAFL+G+
Sbjct: 1056 VTVRTVLTIAVTNKWPIQQLDINNAFLNGV 1085


>gb|KYP34572.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 682

 Score =  259 bits (662), Expect(2) = e-127
 Identities = 127/266 (47%), Positives = 161/266 (60%)
 Frame = -1

Query: 1992 DHVFLGNGTGLPIHSISNEIIPSPLNPKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFF 1813
            +H+ +GNG GLPI+S       SPL P   L   N+LYVP + KNL+S+ +F  DN  FF
Sbjct: 19   NHIVIGNGQGLPINSSGVTHFSSPLKPHVSLTLHNLLYVPTITKNLISVSQFCKDNSVFF 78

Query: 1812 QFHPNFCFAKSQADGSTLLKGQGTKDGLYHLPGIYSAVXXXXXXXXXXXXXXXHATVAST 1633
            +FH  FC  KSQ    TLL G    DGLY  P +                    + V  +
Sbjct: 79   EFHSTFCLVKSQDSNETLLLGVVGPDGLYQFPSLL--------------LPRHPSAVLPS 124

Query: 1632 PHNVISHTTSTGALWHNRLGHPHITVLNSVLKSCNKPTIAMNKRDFCVACCMGKLHRLPS 1453
             H V S++ S  A WH+RLGH H  V+ SV K CN P I  +  DFC +CC+GK H+LPS
Sbjct: 125  AHTVSSNSVSY-ATWHSRLGHAHNDVIKSVFKLCNFPIINKSVSDFCTSCCLGKSHKLPS 183

Query: 1452 NISDTVYSSPLELIYCDLWGPAPMSSSMGYRYYISFVDAYSRFTWIYFLKQKSDALPTFK 1273
             +S TVY +P ELIY DLWGPAP+ S  GY+YY++ VDA++RFTWI+ LK K+  L  FK
Sbjct: 184  QLSKTVYHTPFELIYSDLWGPAPVLSDNGYQYYVTLVDAHTRFTWIFLLKSKAHTLDVFK 243

Query: 1272 TFKTLVENQFNCTIKSFQTDWGGEFR 1195
             F  +V+NQF   IK+ QTDWGGEFR
Sbjct: 244  QFHAMVQNQFQLPIKAIQTDWGGEFR 269



 Score =  229 bits (583), Expect(2) = e-127
 Identities = 106/183 (57%), Positives = 142/183 (77%), Gaps = 1/183 (0%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + YLA  G+ HR+ICPHTHHQNGVVE KHRHIV++GL+LL+QA + + +WD+AF T+VYL
Sbjct: 272  TSYLAQHGIHHRIICPHTHHQNGVVECKHRHIVELGLTLLAQAQLSMSFWDYAFLTSVYL 331

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS   +  +P+  L++++PDYNFL+VFGCSCFP L PY+ TK QFR+ EC+FLGYS
Sbjct: 332  INRLPSSSIQQDVPFQKLFHQLPDYNFLRVFGCSCFPHLWPYNKTKLQFRSQECVFLGYS 391

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSSPTANTYFTLPPLQMPN-QPPS 654
            +SHKGYKCL  +GR+FI KDV+F E +FPY  +F   S+P++++     PL + N Q P 
Sbjct: 392  TSHKGYKCLAPSGRIFISKDVIFCENHFPYPSMFP-PSTPSSSSSPIFVPLVITNPQAPV 450

Query: 653  TAT 645
            T+T
Sbjct: 451  TST 453



 Score =  188 bits (478), Expect = 3e-47
 Identities = 89/147 (60%), Positives = 114/147 (77%)
 Frame = -2

Query: 446 PQNTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTW 267
           P N HPM TRAK GI +PRL P       EP +  QALAS  W AAM+ +YDAL+ NGTW
Sbjct: 494 PVNLHPMTTRAKAGIAKPRLQPTLLLTHFEPKSTKQALASDTWLAAMKQKYDALMANGTW 553

Query: 266 SLVHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPIT 87
           +LV LP+ +  IG KWVFR KENPDG+++K+KARLVAKGF+Q+ G DY+ETF+ V+KP+T
Sbjct: 554 TLVSLPSHRTTIGCKWVFRIKENPDGTVHKHKARLVAKGFHQQFGFDYTETFSLVVKPVT 613

Query: 86  VRIILTLALTNGWSIKQIDINNAFLHG 6
           +R+I TL LT+ WSI+Q+D+NNAFL+G
Sbjct: 614 IRLIHTLVLTHHWSIQQLDVNNAFLNG 640


>gb|KYP52268.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 828

 Score =  265 bits (676), Expect(2) = e-127
 Identities = 134/290 (46%), Positives = 169/290 (58%)
 Frame = -1

Query: 2064 DTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPLNPKHLLHYKNI 1885
            D  AS+H++N+  N    T   G D + +GNG GLPI+S S    PSPL P   L   N+
Sbjct: 297  DFGASNHVTNVSHNIQQFTPFEGSDQIVIGNGQGLPINSSSVTHFPSPLKPHISLTLHNL 356

Query: 1884 LYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKDGLYHLPGIYS 1705
            LYVP + KNL+S+ +F  DN  FF+FH  FC  KSQ    TLL      DGLY  P +  
Sbjct: 357  LYVPTITKNLISVSQFCKDNFVFFEFHSTFCLVKSQDTNETLLFEVVGPDGLYQFPSLL- 415

Query: 1704 AVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGALWHNRLGHPHITVLNSVLKSCNK 1525
                              +TV  + H V S+  S  A WH+RL HPH  VL  V K CN 
Sbjct: 416  -------------LPRQPSTVTPSAHTVSSNPVSY-ATWHSRLRHPHNDVLKYVFKLCNF 461

Query: 1524 PTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSSSMGYRYYISF 1345
            P I  +  DFC +CC+GK H+LPS +S TVY +P ELIY DLWG AP  S  GY+YY++F
Sbjct: 462  PIINKSVFDFCTSCCLGKSHKLPSQLSKTVYHTPFELIYSDLWGLAPFLSDNGYQYYVTF 521

Query: 1344 VDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFR 1195
            VDA++RFTWI+ LK K+  L  FK F  +V+NQF   +K  Q DWGG+FR
Sbjct: 522  VDAHTRFTWIFLLKSKAHTLDVFKQFHAMVQNQFQLPVKEIQIDWGGKFR 571



 Score =  223 bits (568), Expect(2) = e-127
 Identities = 103/170 (60%), Positives = 133/170 (78%), Gaps = 2/170 (1%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + YLA  G+ H LICP+THHQNGVVE KHRHIV++GL+LL+QA  P+ +WD+AF T+VYL
Sbjct: 574  TSYLAQHGIHHCLICPNTHHQNGVVECKHRHIVELGLTLLAQAHFPMHFWDYAFLTSVYL 633

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS   +  +P+  L++++PDY+FL +FGCSCFP LRPY+ TK QFR+ EC+FLGYS
Sbjct: 634  INRLPSSSIQQDVPFRKLFHQLPDYSFLCIFGCSCFPCLRPYNKTKLQFRSQECVFLGYS 693

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLF--SVTSSPTANTYFTL 687
            +SHKGYKCL S+GR FI KDV+F E+ FPY  LF  S  SSP ++ +  L
Sbjct: 694  TSHKGYKCLASSGRTFISKDVIFCESCFPYPSLFPPSTPSSPPSSIFVPL 743


>gb|KYP34577.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 661

 Score =  255 bits (651), Expect(2) = e-126
 Identities = 126/262 (48%), Positives = 158/262 (60%)
 Frame = -1

Query: 1980 LGNGTGLPIHSISNEIIPSPLNPKHLLHYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHP 1801
            +GNG GLPI+S       SPL P   L   N+LYVP + KNL+S+ +F  DN  FF+FH 
Sbjct: 2    IGNGQGLPINSSGVTHFSSPLKPHVSLTLHNLLYVPTITKNLISVSQFCKDNSVFFEFHS 61

Query: 1800 NFCFAKSQADGSTLLKGQGTKDGLYHLPGIYSAVXXXXXXXXXXXXXXXHATVASTPHNV 1621
             FC  KSQ    TLL G    DGLY  P +                    + V  + H V
Sbjct: 62   TFCLVKSQDSNETLLLGVVGPDGLYQFPSLL--------------LPRHPSAVLPSAHTV 107

Query: 1620 ISHTTSTGALWHNRLGHPHITVLNSVLKSCNKPTIAMNKRDFCVACCMGKLHRLPSNISD 1441
             S++ S  A WH+RLGH H  V+ SV K CN P I  +  DFC +CC+GK H+LPS +S 
Sbjct: 108  SSNSVSY-ATWHSRLGHAHNDVIKSVFKLCNFPIINKSVSDFCTSCCLGKSHKLPSQLSK 166

Query: 1440 TVYSSPLELIYCDLWGPAPMSSSMGYRYYISFVDAYSRFTWIYFLKQKSDALPTFKTFKT 1261
            TVY +P ELIY DLWGPAP+ S  GY+YY++ VDA++RFTWI+ LK K+  L  FK F  
Sbjct: 167  TVYHTPFELIYSDLWGPAPVLSDNGYQYYVTLVDAHTRFTWIFLLKSKAHTLDVFKQFHA 226

Query: 1260 LVENQFNCTIKSFQTDWGGEFR 1195
            +V+NQF   IK+ QTDWGGEFR
Sbjct: 227  MVQNQFQLPIKAIQTDWGGEFR 248



 Score =  229 bits (583), Expect(2) = e-126
 Identities = 106/183 (57%), Positives = 142/183 (77%), Gaps = 1/183 (0%)
 Frame = -2

Query: 1190 SKYLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYL 1011
            + YLA  G+ HR+ICPHTHHQNGVVE KHRHIV++GL+LL+QA + + +WD+AF T+VYL
Sbjct: 251  TSYLAQHGIHHRIICPHTHHQNGVVECKHRHIVELGLTLLAQAQLSMSFWDYAFLTSVYL 310

Query: 1010 INRLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYS 831
            INRLPS   +  +P+  L++++PDYNFL+VFGCSCFP L PY+ TK QFR+ EC+FLGYS
Sbjct: 311  INRLPSSSIQQDVPFQKLFHQLPDYNFLRVFGCSCFPHLWPYNKTKLQFRSQECVFLGYS 370

Query: 830  SSHKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSSPTANTYFTLPPLQMPN-QPPS 654
            +SHKGYKCL  +GR+FI KDV+F E +FPY  +F   S+P++++     PL + N Q P 
Sbjct: 371  TSHKGYKCLAPSGRIFISKDVIFCENHFPYPSMFP-PSTPSSSSSPIFVPLVITNPQAPV 429

Query: 653  TAT 645
            T+T
Sbjct: 430  TST 432



 Score =  188 bits (478), Expect = 2e-47
 Identities = 89/147 (60%), Positives = 114/147 (77%)
 Frame = -2

Query: 446 PQNTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTW 267
           P N HPM TRAK GI +PRL P       EP +  QALAS  W AAM+ +YDAL+ NGTW
Sbjct: 473 PVNLHPMTTRAKAGIAKPRLQPTLLLTHFEPKSTKQALASDTWLAAMKQKYDALMANGTW 532

Query: 266 SLVHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPIT 87
           +LV LP+ +  IG KWVFR KENPDG+++K+KARLVAKGF+Q+ G DY+ETF+ V+KP+T
Sbjct: 533 TLVSLPSHRTTIGCKWVFRIKENPDGTVHKHKARLVAKGFHQQFGFDYTETFSLVVKPVT 592

Query: 86  VRIILTLALTNGWSIKQIDINNAFLHG 6
           +R+I TL LT+ WSI+Q+D+NNAFL+G
Sbjct: 593 IRLIHTLVLTHHWSIQQLDVNNAFLNG 619


>gb|KYP71160.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1268

 Score =  242 bits (617), Expect(2) = e-125
 Identities = 124/295 (42%), Positives = 165/295 (55%)
 Frame = -1

Query: 2079 SNQLGDTAASHHMSNIPPNPATATVLSGQDHVFLGNGTGLPIHSISNEIIPSPLNPKHLL 1900
            S  + D+ AS H++  P N        G D +F+GNG GL I+        SP+      
Sbjct: 265  STWIPDSGASFHVTGEPQNVHQLGHFDGPDQIFIGNGQGLHINGSGFSSFLSPIKSNFCF 324

Query: 1899 HYKNILYVPQLNKNLLSIKKFVTDNDAFFQFHPNFCFAKSQADGSTLLKGQGTKDGLYHL 1720
               ++L+VP + KNLLS+ KF  DN  +F+FH + CF KSQ     LL+G    DGLY  
Sbjct: 325  KLNDLLHVPSITKNLLSVSKFAKDNSVYFEFHSHCCFVKSQVTNEILLQGVVGSDGLYSF 384

Query: 1719 PGIYSAVXXXXXXXXXXXXXXXHATVASTPHNVISHTTSTGALWHNRLGHPHITVLNSVL 1540
              +                     +  + P    SHT+     WH RL HP+  VL  VL
Sbjct: 385  SNLELQGPSVLVSSSMASSVDPAVSAFAIPS---SHTS-----WHTRLSHPNSHVLKLVL 436

Query: 1539 KSCNKPTIAMNKRDFCVACCMGKLHRLPSNISDTVYSSPLELIYCDLWGPAPMSSSMGYR 1360
              CN      N  +FC +CC+GK HRLPS +S++VYS+PL+LI+ DLWGP+ + S  GY 
Sbjct: 437  NHCNIAPSNRNVSEFCSSCCVGKSHRLPSLVSESVYSAPLDLIFTDLWGPSHVVSHSGYV 496

Query: 1359 YYISFVDAYSRFTWIYFLKQKSDALPTFKTFKTLVENQFNCTIKSFQTDWGGEFR 1195
            YY+SF+DA+S+FTWIY LK KSD L  F+ FK +VE Q N  IKS Q+DWGGE+R
Sbjct: 497  YYVSFIDAFSKFTWIYPLKSKSDTLSVFQQFKAMVELQLNTKIKSIQSDWGGEYR 551



 Score =  238 bits (606), Expect(2) = e-125
 Identities = 109/182 (59%), Positives = 140/182 (76%), Gaps = 2/182 (1%)
 Frame = -2

Query: 1184 YLADLGVIHRLICPHTHHQNGVVERKHRHIVDMGLSLLSQASMPIKYWDHAFHTAVYLIN 1005
            +LA  G+ HRLICPHTHHQNGVVERKHRHIVD+G++LL  AS+P+ +WD+AF TAVYLIN
Sbjct: 556  FLATHGITHRLICPHTHHQNGVVERKHRHIVDIGITLLHHASLPLTFWDYAFSTAVYLIN 615

Query: 1004 RLPSPFQKNTIPYSNLYNKIPDYNFLKVFGCSCFPLLRPYHSTKFQFRTAECIFLGYSSS 825
            RLP+      IP++ L+ + PDY FLK FGC+CFP LRPY + K  FR+ EC+FLGYS+S
Sbjct: 616  RLPTASLNFDIPFTVLFKQTPDYKFLKTFGCACFPFLRPYTTHKLDFRSQECVFLGYSNS 675

Query: 824  HKGYKCLDSTGRMFIFKDVLFNETNFPYVRLFSVTSS--PTANTYFTLPPLQMPNQPPST 651
            HKGYKCL ++G+++I KDV+FNET FPY+ LF  TS+  P+ + YFTL P   P    +T
Sbjct: 676  HKGYKCLSASGKIYISKDVIFNETRFPYLDLFQHTSTPVPSPSQYFTLNPDLSPPCSHTT 735

Query: 650  AT 645
            A+
Sbjct: 736  AS 737



 Score =  182 bits (462), Expect = 5e-44
 Identities = 85/146 (58%), Positives = 110/146 (75%)
 Frame = -2

Query: 440  NTHPMMTRAKHGIVQPRLHPXXXXXXTEPYTVSQALASPHWKAAMQVEYDALITNGTWSL 261
            N H M TR+K GI +P++ P      +EP  V QAL+ P W +AM+ EY AL+ N TW L
Sbjct: 787  NNHSMQTRSKSGIYKPKMPPSLFLAHSEPKNVKQALSDPDWFSAMKQEYSALLQNHTWDL 846

Query: 260  VHLPAGKKAIGNKWVFRTKENPDGSLNKYKARLVAKGFNQREGCDYSETFAPVIKPITVR 81
            V LP+ ++A+G KWVFR KEN DGS+NK+KARLVAKGF+Q  G D+ ETF+PVIKPIT+R
Sbjct: 847  VPLPSNRQAVGCKWVFRVKENADGSINKFKARLVAKGFHQVHGFDFHETFSPVIKPITIR 906

Query: 80   IILTLALTNGWSIKQIDINNAFLHGL 3
            II+TLALT  W + Q+D+NNAFL+G+
Sbjct: 907  IIITLALTYNWHLFQLDVNNAFLNGI 932