BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00004170
         (2495 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX92765.1| ribonuclease H [Trifolium pratense]                    478   0.0  
gb|PNX92714.1| ribonuclease H [Trifolium pratense]                    441   0.0  
gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]           435   0.0  
dbj|GAU50504.1| hypothetical protein TSUD_409790 [Trifolium subt...   436   0.0  
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...   434   0.0  
gb|PNY14401.1| ribonuclease H [Trifolium pratense]                    436   0.0  
dbj|GAU35685.1| hypothetical protein TSUD_162570 [Trifolium subt...   415   0.0  
dbj|GAU37589.1| hypothetical protein TSUD_365100 [Trifolium subt...   483   0.0  
dbj|GAU35042.1| hypothetical protein TSUD_30080 [Trifolium subte...   280   0.0  
gb|PNX71724.1| ribonuclease H, partial [Trifolium pratense]           444   e-176
dbj|GAU51664.1| hypothetical protein TSUD_268670 [Trifolium subt...   407   e-167
dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subt...   450   e-166
gb|PNX92520.1| ribonuclease H, partial [Trifolium pratense]           472   e-161
dbj|GAU22350.1| hypothetical protein TSUD_106780 [Trifolium subt...   330   e-156
gb|PNY01679.1| ribonuclease H, partial [Trifolium pratense]           361   e-154
gb|PNX93586.1| ribonuclease H, partial [Trifolium pratense]           480   e-152
gb|PNX93226.1| ribonuclease H, partial [Trifolium pratense]           470   e-151
gb|PNY14872.1| ribonuclease H, partial [Trifolium pratense]           356   e-150
gb|KYP37151.1| Putative ribonuclease H protein At1g65750 family ...   373   e-146
gb|PNX84261.1| ribonuclease H, partial [Trifolium pratense]           437   e-140

>gb|PNX92765.1| ribonuclease H [Trifolium pratense]
          Length = 1310

 Score =  478 bits (1230), Expect(3) = 0.0
 Identities = 229/330 (69%), Positives = 271/330 (82%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            KVD P  FK+FRPISLCNT+YKLITK+LVNR+RP+L+ IIGP+QS FLPGRGTCDNAI+L
Sbjct: 456  KVDCPNNFKEFRPISLCNTLYKLITKVLVNRLRPMLDSIIGPFQSSFLPGRGTCDNAIIL 515

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +HSM      KG VAYKIDLEKAYD+V+W +LRSCL +FGFP  TIKLIMHCVSSSS
Sbjct: 516  QEIIHSMRKSKSKKGDVAYKIDLEKAYDNVDWSYLRSCLRDFGFPPITIKLIMHCVSSSS 575

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            LSLIWNG RLP+FSP RGLRQGDPLSPYLFVICMEKL+ AI++ V D  WKP+++SK GP
Sbjct: 576  LSLIWNGNRLPNFSPTRGLRQGDPLSPYLFVICMEKLSLAIVEAVQDNCWKPIRVSKNGP 635

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
              SHLFFADDVLLFSKAT SQ  L+AN+F  F+ ASGL++N  KSRA FS   TR K + 
Sbjct: 636  CFSHLFFADDVLLFSKATCSQGRLMANLFNNFSKASGLKINCTKSRAFFSAGVTRRKREK 695

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            + +++ IRS  SF  YLGFPMI GR+ K DF F++DK+ SRLASWKNKLL + GR+TLAK
Sbjct: 696  LTSLSSIRSTNSFGNYLGFPMISGRVRKEDFNFILDKLNSRLASWKNKLLNKPGRVTLAK 755

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SVLNSIP YYMQ++W+P SIC +ID +TR+
Sbjct: 756  SVLNSIPTYYMQISWLPSSICYQIDQMTRN 785



 Score =  267 bits (682), Expect(3) = 0.0
 Identities = 129/313 (41%), Positives = 185/313 (59%), Gaps = 10/313 (3%)
 Frame = -2

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            + R+FIWKGS +KGI+LVGW SIT+TK  GGLGIR+ARE NTAMLGKLVWD+ + + K W
Sbjct: 782  MTRNFIWKGSSNKGIHLVGWSSITQTKSDGGLGIRLAREANTAMLGKLVWDIQQNSPKPW 841

Query: 1282 CHVLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYG 1103
              +L  KY+     +    + GS  WNSI KA+ +L DG+ +R+ +G S FWY  W  + 
Sbjct: 842  VLMLRSKYLQHQPFINAPTQPGSPIWNSISKAKMILADGFKYRVSDGSSLFWYSPWLSHK 901

Query: 1102 KLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYT 923
             L   V +V I D+Q+ IKDI  +DSW L  LYT +   + + I + +  LN    D + 
Sbjct: 902  LLGTEVDYVAIQDSQIRIKDIYFNDSWHLNLLYTPLSSEMKERITSTKFILNNGTIDCFI 961

Query: 922  WKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP- 746
            W+G++DG+Y   SG+KW++   QQ  +V +I SW WIW+L   EKI+F  W ACH+++P 
Sbjct: 962  WQGNIDGIYNASSGYKWLL---QQKYNVPSIQSWNWIWKLQAPEKIKFLIWCACHHSIPT 1018

Query: 745  ---------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWLL 593
                      +   C RC    E  +HC+RDC   ++IW  LG+ + +F+   N   WL 
Sbjct: 1019 MYMLHHRNMTSSSICTRCSNNEETVIHCLRDCTTAKRIWEALGYSNISFFSSNNLESWLK 1078

Query: 592  AGAKSTVPQIFFS 554
              +      +F +
Sbjct: 1079 IHSYGPAANLFLA 1091



 Score = 42.7 bits (99), Expect(3) = 0.0
 Identities = 34/113 (30%), Positives = 49/113 (43%)
 Frame = -1

Query: 566  NIFFLAQVSIPSYRL*LNINCLPKLMKPSNQNXXXXXXSERSVTWHPEKDCDVILNVDGS 387
            NI  +   SI  Y++ + +  L  L+              R VTWHP +D   +LNVDGS
Sbjct: 1101 NIVCVGNESIHMYQILIEVRKLASLILSCFSIVPSALKPPRWVTWHPSRDVGFVLNVDGS 1160

Query: 386  CLATWVKLGLVESCALMRENGSAVSRIILASPIAFMQNYLVCTGVSVLLGIKV 228
            CL    + G      L+RE     S II  S    + N      ++V  G+K+
Sbjct: 1161 CLGDSGRAGF---GGLIREGDG--SWIIGFSGFLGISNNTFAELMAVFHGLKI 1208



 Score =  111 bits (277), Expect = 4e-21
 Identities = 52/122 (42%), Positives = 80/122 (65%)
 Frame = -3

Query: 372  GQAGFGGILRTNEGKWIRGFSDNIGFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            G+AGFGG++R  +G WI GFS  +G SN+  A+L+ ++ GL    ++GY  + CYSDS  
Sbjct: 1166 GRAGFGGLIREGDGSWIIGFSGFLGISNNTFAELMAVFHGLKIARERGYRRIHCYSDSQT 1225

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGASGTSGWN 13
             +  ++  LN +H YAA+I ++ +LL  +  V L H+LREGNA AD+LAK+G++      
Sbjct: 1226 VVDAISKDLNSFHRYAAVIASIKDLLQLDWEVRLSHSLREGNAGADFLAKIGSANDDKLT 1285

Query: 12   FY 7
            F+
Sbjct: 1286 FW 1287


>gb|PNX92714.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score =  441 bits (1135), Expect(3) = 0.0
 Identities = 207/329 (62%), Positives = 261/329 (79%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            KVD P TFK+ RPISLCN +YK+ITK+LVNR+RP+L+ +IGP+QS FLPGRGT DNAIVL
Sbjct: 504  KVDPPTTFKELRPISLCNIVYKIITKVLVNRLRPMLDNLIGPFQSSFLPGRGTSDNAIVL 563

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +H M      KG VA+K+DLEKA+D+VNW FL++CL +FGFP  T  LIMHCV+SS+
Sbjct: 564  QEVVHYMRKSKKKKGDVAFKLDLEKAFDNVNWTFLKNCLNDFGFPTITTNLIMHCVTSSN 623

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            LS++WNG R+PSF P  GLRQGDPLSPYLF++CMEKL+ AI + V    WKP+ +S+ GP
Sbjct: 624  LSILWNGNRMPSFKPTHGLRQGDPLSPYLFILCMEKLSLAINEAVDIGSWKPICISRNGP 683

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHL FADDVLLFSKA +SQ   + N+F  F+ ASGL++N++KSRALFS    RAK+  
Sbjct: 684  RLSHLLFADDVLLFSKAKKSQLRFITNLFDVFSRASGLKINISKSRALFSSGIPRAKIQQ 743

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            + +ITGIRS  S  KYLGFP++ GR  K+DF+F+++K+Q+RLASWK+KLL + GRL LA 
Sbjct: 744  LTSITGIRSTPSLGKYLGFPILNGRAKKSDFDFIIEKMQTRLASWKSKLLNKPGRLALAS 803

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTR 1458
            SVL SIP YYMQ+AW+PQSIC  ID+ TR
Sbjct: 804  SVLTSIPSYYMQIAWLPQSICNIIDHTTR 832



 Score =  298 bits (763), Expect(3) = 0.0
 Identities = 142/309 (45%), Positives = 193/309 (62%), Gaps = 10/309 (3%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R FIWKGS + GINLVGW  I+  K  GGLGIR AR+ NT++LGKLVWDL + ++KLW  
Sbjct: 832  RHFIWKGSTNTGINLVGWQKISCPKRCGGLGIRAARDMNTSLLGKLVWDLLQDSDKLWVR 891

Query: 1276 VLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKL 1097
            VL++KY+  + IL     +GS TWNSIMKA+ VL+ G+ +R G+G SSFWY +W+ +G L
Sbjct: 892  VLSDKYISGTRILSSDTLSGSSTWNSIMKAKNVLRTGFVWRPGSGNSSFWYSHWSHFGPL 951

Query: 1096 SALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWK 917
             A+VP+V  HDT L +KD+    +  L  LYT +PQ V   + +++   N TI+D   W 
Sbjct: 952  GAIVPYVHYHDTALMVKDVFVSSTANLHLLYTQLPQEVVISLNSMKFSFNSTIEDTMIWS 1011

Query: 916  GSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP--- 746
             +  G YTT SG+ WI+  R Q   +++  SW WIW L + EKI+F FW ACHN++P   
Sbjct: 1012 ANKHGTYTTSSGYLWILSLRSQ---LQSNQSWKWIWSLHLPEKIKFLFWLACHNSVPTLA 1068

Query: 745  -------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWLLAG 587
                    +   C RCG   E FLHC+RDCP  + +WF +GF  P FY  T++I W+  G
Sbjct: 1069 LLHHRNMSSSSACPRCGYFEESFLHCVRDCPTSKNLWFSIGFSAPQFYDTTDNISWIKEG 1128

Query: 586  AKSTVPQIF 560
               +   IF
Sbjct: 1129 TSGSSLNIF 1137



 Score = 37.4 bits (85), Expect(3) = 0.0
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = -1

Query: 539  IPSYRL*LNINCLPKLMKPSNQNXXXXXXSERSVTWHPEKDCDVILNVDGSCLATWVKLG 360
            IP YRL +    + +L              +  V W+      +ILNVDGSCL T  + G
Sbjct: 1158 IPQYRLIMEAKLMSQLFSSCFSTNSSGTLVDHFVKWNASNMTCIILNVDGSCLGTPCRAG 1217

Query: 359  LVESCALMRENGSAVS 312
                  L   NG+ +S
Sbjct: 1218 F--GGVLRNSNGAWIS 1231



 Score =  112 bits (281), Expect = 1e-21
 Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
 Frame = -3

Query: 369  QAGFGGILRTNEGKWIRGFSDNI-GFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            +AGFGG+LR + G WI GFS  I G ++ L+A+LL +Y GLS   D G+  V CYSDS  
Sbjct: 1215 RAGFGGVLRNSNGAWISGFSGFIAGSTDILYAELLAIYHGLSLAKDLGHDHVACYSDSLN 1274

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGAS 31
            S+ L+     ++H YA +I+N+ +LL     V L+H+LREGN+CAD++AKLGAS
Sbjct: 1275 SLSLIQNSTPRFHIYAVLIQNIKDLLLDLGTVTLIHSLREGNSCADFMAKLGAS 1328


>gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1142

 Score =  435 bits (1119), Expect(2) = 0.0
 Identities = 212/330 (64%), Positives = 257/330 (77%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            KVD P  FK+ RPISLCNT+YKLITKI+VNR+RP L QI+GP+QS FLPG+GT DNAI+L
Sbjct: 446  KVDCPNNFKELRPISLCNTVYKLITKIMVNRLRPHLNQIVGPFQSSFLPGKGTTDNAIIL 505

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QEA+HSM      KG + +KIDLEKAYD+VNW+FL  CL   GFP   IKLIM CVSSSS
Sbjct: 506  QEAIHSMRKSKRKKGDMVFKIDLEKAYDNVNWEFLEFCLQRNGFPPTIIKLIMFCVSSSS 565

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            +S++WNG+RLP+F+P +GLRQGDPLSPYLFV+CME L+  I+  V D  WKPV+LS+ GP
Sbjct: 566  MSIMWNGRRLPNFTPTKGLRQGDPLSPYLFVLCMECLSQVIIKAVNDGLWKPVRLSRNGP 625

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHLFFADDVLLF+KAT+SQA  VA     FA+ SGL+VN  KS+  FS ST R K+ S
Sbjct: 626  PLSHLFFADDVLLFAKATKSQALNVATTLTHFASFSGLKVNATKSKVFFSSSTKRGKMTS 685

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            IVT TGI    S +KYLGFPM+ GR+ + D+EF+ +KI  RLASW++ LL +AGR+TL K
Sbjct: 686  IVTSTGISRTHSLEKYLGFPMMHGRLQRKDYEFLEEKISHRLASWQHNLLNKAGRMTLVK 745

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SVLNSIP YYMQVAW+PQS C  ID + R+
Sbjct: 746  SVLNSIPNYYMQVAWLPQSTCETIDRMARN 775



 Score =  310 bits (795), Expect(2) = 0.0
 Identities = 152/381 (39%), Positives = 220/381 (57%), Gaps = 12/381 (3%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R+F+WKG+   G++LV WD IT+ K  GGLGIR +RE NTA+LGKLVW +H+  + LW  
Sbjct: 774  RNFLWKGNSSTGVHLVSWDKITRPKKLGGLGIRKSREANTALLGKLVWSIHQNCDSLWVQ 833

Query: 1276 VLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKL 1097
            VL  KY+   S + ++KK GS+TWN+IMKA   L+DG++FRLGNG SSFW+ NW+  GKL
Sbjct: 834  VLKHKYINNGSFITMTKKPGSVTWNAIMKALLALRDGFEFRLGNGNSSFWFSNWSGTGKL 893

Query: 1096 SALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWK 917
            +  V +VDIHD ++S+KD+  D +W    LYTNIP  V+D+++ I  CLN  + D YTWK
Sbjct: 894  ADKVLYVDIHDLEMSVKDVYTDGNWNFNMLYTNIPTAVTDHLKMIPVCLNSQVADCYTWK 953

Query: 916  GSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP--- 746
            G+L+G+Y+ + G+ W+        D  +I SW W+W +   EK++FF WTA HN+LP   
Sbjct: 954  GNLNGIYSARDGYFWLNRNEFAGNDTDSI-SWTWLWNISAPEKLKFFLWTALHNSLPTRE 1012

Query: 745  -------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWLLAG 587
                       +C RC   IE  LHC+RDC    ++W  +GF D +FY+  +  +WL  G
Sbjct: 1013 MLCHRNMLQANHCPRCNQEIETTLHCLRDCDFAIRLWHSIGFTDQSFYRENDLYNWLRIG 1072

Query: 586  AKSTVPQIFFSLLRYXXXXXXXXXXXIAYPS**SHRTRILLLHDRVR--GLSLGTQRKTV 413
             +     +F + + +                    R  + L ++ V    L + T+    
Sbjct: 1073 IQGKSVFMFLAAVWWLWRA----------------RNLLCLANELVSLITLRMWTENYAH 1116

Query: 412  MLF*MLMVAA*QPGSSWVWWN 350
            +LF      A  P + WV WN
Sbjct: 1117 LLFRCFFKQATVPDTKWVRWN 1137


>dbj|GAU50504.1| hypothetical protein TSUD_409790 [Trifolium subterraneum]
          Length = 902

 Score =  436 bits (1121), Expect(2) = 0.0
 Identities = 201/330 (60%), Positives = 261/330 (79%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            K+D P +F+DFRPISLCN +YK+ITK+LV+R+RP+L  IIGPYQS FLPGRGT DNAIVL
Sbjct: 223  KIDPPTSFRDFRPISLCNVVYKIITKVLVHRLRPILNTIIGPYQSSFLPGRGTSDNAIVL 282

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +H M      KG VA+K+DLEKA+D+VNW+FL+SCL +FGFP+ TI+LIMHCV+SS+
Sbjct: 283  QEIIHFMRRSKRKKGYVAFKLDLEKAFDNVNWEFLKSCLHDFGFPDTTIQLIMHCVTSSN 342

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
             SL+WNG ++P F  + GLRQGDPLSPYLF++CMEKL+ AI + V    W P+ +S  GP
Sbjct: 343  FSLLWNGNKMPHFKSSHGLRQGDPLSPYLFILCMEKLSIAINNAVQQGNWAPIHISDNGP 402

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHL FADDVLLFSKA  SQ   + ++F  F+ ASGL++N++KSRA +S      K++ 
Sbjct: 403  RLSHLLFADDVLLFSKAKNSQLRFITDLFDHFSRASGLKINLSKSRAFYSAGIPHTKINK 462

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            + +I+GIRS VS DKYLGFP+++GR  ++DF F++DK+QSRLASWKNKLL + GRL LA 
Sbjct: 463  LTSISGIRSTVSLDKYLGFPILKGRAKRSDFHFIIDKMQSRLASWKNKLLNKLGRLALAS 522

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SV++SIP YYMQ++W+PQSIC  ID  TR+
Sbjct: 523  SVISSIPSYYMQISWLPQSICDSIDQTTRN 552



 Score =  298 bits (763), Expect(2) = 0.0
 Identities = 142/310 (45%), Positives = 196/310 (63%), Gaps = 11/310 (3%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R+FIW+ S +KGI+LV W  I + K HGGL IR AR  N ++LGKLVWD+ + +NKLW  
Sbjct: 551  RNFIWRDSNNKGIHLVSWKKIARPKQHGGLSIRTARGQNISLLGKLVWDMVQSSNKLWVD 610

Query: 1276 VLAEKYM-GLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGK 1100
            +L+ KY+ G + +L  +  +GS TW+SI++A+ +LKDG+ +R G+G SSFW  +WT  G+
Sbjct: 611  LLSSKYVKGSTFLLSGNNSSGSPTWSSIIQAKNILKDGFSWRAGSGTSSFWSSHWTTLGQ 670

Query: 1099 LSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTW 920
            L ALVP++DIHD QLSIKD++  +S     LYT +P  VSD I  I    N +IDD + W
Sbjct: 671  LGALVPYIDIHDLQLSIKDVLSTNSPHTHILYTQLPPSVSDLINNIHIKFNDSIDDAFIW 730

Query: 919  KGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLPF- 743
              + +G YTTKSG+ W++  +  VT     LSW WIW+L + EKI+FFFW ACHN++P  
Sbjct: 731  TSNKNGSYTTKSGYNWLLSLQNLVTPHNPSLSWSWIWKLQLPEKIKFFFWLACHNSVPTL 790

Query: 742  ---------TVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWLLA 590
                         C RCG   E FLHC+RDC     IW  +GF +P F+   ++ DWL  
Sbjct: 791  SLLNHRKMNLSATCARCGLREETFLHCVRDCDFSISIWHHIGFDNPYFFSSMDAHDWLKW 850

Query: 589  GAKSTVPQIF 560
            G+  +   IF
Sbjct: 851  GSTGSKAFIF 860


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score =  434 bits (1116), Expect(4) = 0.0
 Identities = 197/330 (59%), Positives = 259/330 (78%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            K+DSP T+KDFRPISLCNT+YK+ITK+LV+R+RP L  +IGPYQS FLPGRGT DN+I+L
Sbjct: 497  KIDSPNTYKDFRPISLCNTLYKIITKVLVHRLRPFLNNLIGPYQSSFLPGRGTADNSIIL 556

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE LH M      KG VA+K+DLEKA+D+VNWDFL SCL++FGFP+  +KLIMHCVSS++
Sbjct: 557  QEILHFMKRSKRKKGYVAFKLDLEKAFDNVNWDFLNSCLLDFGFPDIIVKLIMHCVSSAN 616

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
             SL+WNG ++P F P  GLRQGDPLSPYLF++CMEKL+ AI D V    W+P+ +   GP
Sbjct: 617  YSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQGSWEPIHIINDGP 676

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             +SHL FADDVLLF+KA  SQ   + N+F  F+ ASGL++N++KSRA +S  T   K+++
Sbjct: 677  QISHLLFADDVLLFTKAKSSQLQFITNLFDRFSRASGLKINISKSRAYYSSGTPNGKINN 736

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            +  I+GI+S  +  KYLGFPM+QGR  ++DF F+++K+Q+RLASWKN+LL + GRLTLA 
Sbjct: 737  LTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRLTLAT 796

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SVL++IP YYMQ+ W+PQ+IC  ID   R+
Sbjct: 797  SVLSTIPTYYMQINWLPQNICDSIDQTARN 826



 Score =  205 bits (522), Expect(4) = 0.0
 Identities = 112/298 (37%), Positives = 151/298 (50%), Gaps = 11/298 (3%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R+F+WKGS +KGI+LV W +IT+ K  GGLGIR AR+ N  +LGKLVWD+ +  NKLW +
Sbjct: 825  RNFLWKGSNNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVN 884

Query: 1276 VLAEKYMGLSSILEVS-KKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGK 1100
            +LA+KY   +S+LE +   N S +W SI++A+ +LK GY +R G G SSFW+ NW+ +G 
Sbjct: 885  LLAKKYSSGTSLLEANVNSNSSPSWFSIIRAKDILKTGYSWRAGAGTSSFWFSNWSSHGY 944

Query: 1099 LSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTW 920
            L +LVP +DIHD  L++KD+                                        
Sbjct: 945  LGSLVPIIDIHDIHLTVKDV---------------------------------------- 964

Query: 919  KGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP-- 746
               L  V T+ +   W               SW  IW+L   EK +   W ACHN  P  
Sbjct: 965  ---LTSVETSSNDSVW---------------SW--IWQLTAPEKYKLLIWLACHNAAPTL 1004

Query: 745  --------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWL 596
                         C RCG   E FLHC+RDC     IW  LGF   AF+ V++  DW+
Sbjct: 1005 SLLHHRKMAPAATCSRCGENDESFLHCVRDCKHSAAIWHKLGFVTAAFFSVSSVQDWI 1062



 Score = 98.2 bits (243), Expect(4) = 0.0
 Identities = 54/114 (47%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
 Frame = -3

Query: 369  QAGFGGILRTNEGKWIRGFSDNIGFSNS-LHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            +AGFGGI R N G ++ G+S  I  S   L A+L  L++GL    + G   + CYSDS L
Sbjct: 1153 RAGFGGIFRNNVGGYLSGYSGFISESTDILLAELTALHQGLIMAAEMGIEELACYSDSLL 1212

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGAS 31
            +I+L+T   +K+H YA +I+++ +LLS + N  + H  REGN CADYLAKLGAS
Sbjct: 1213 TINLITRTTSKYHTYAVLIQDIKDLLSAH-NFSVYHCFREGNQCADYLAKLGAS 1265



 Score = 30.0 bits (66), Expect(4) = 0.0
 Identities = 21/58 (36%), Positives = 28/58 (48%)
 Frame = -1

Query: 533  SYRL*LNINCLPKLMKPSNQNXXXXXXSERSVTWHPEKDCDVILNVDGSCLATWVKLG 360
            S+R+  +IN +      SN        S R V W+       ILNVDGSCL T ++ G
Sbjct: 1101 SFRINDSINAIRSAFVKSN---VIQPDSARMVKWNQGNHQCHILNVDGSCLGTPIRAG 1155


>gb|PNY14401.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score =  436 bits (1122), Expect(3) = 0.0
 Identities = 198/330 (60%), Positives = 264/330 (80%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            K+D+P+TFKDFRPISLCN +YKLITK+LV+R+RP L+ IIGP+QS FLPGRGT DNAIVL
Sbjct: 504  KIDTPKTFKDFRPISLCNIVYKLITKVLVHRLRPFLDNIIGPFQSSFLPGRGTSDNAIVL 563

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +H M       G  A+K+DLEKA+D+VNWDFLR+CL++FGFP+ T++LIMHCV+S +
Sbjct: 564  QEIIHFMKRSRNKNGYAAFKLDLEKAFDNVNWDFLRNCLIDFGFPDITVRLIMHCVTSPT 623

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
             S++WNG +LP F+P  GLRQGDPLSPYLF+ICMEKL+ AI + V  R W+P+ ++  GP
Sbjct: 624  YSILWNGTQLPPFTPTHGLRQGDPLSPYLFIICMEKLSVAINNAVIQRNWEPIAITTHGP 683

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHL FADDVLLF+KA  SQ + +  +F+ F+ ASGL++N++KSRA +S  T + K+  
Sbjct: 684  QLSHLLFADDVLLFTKAKNSQINFITELFERFSHASGLKINLSKSRAYYSSGTPQDKIHR 743

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            + +++GIR+ +S +KYLGFP++QGR  K DF F+ +K+Q RLASWKNK+L ++GRL LA 
Sbjct: 744  LTSLSGIRNTLSLEKYLGFPILQGRAKKTDFLFIFEKMQRRLASWKNKILNKSGRLALAS 803

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SVL+SIP YYMQ+ W+PQSIC  ID +TR+
Sbjct: 804  SVLSSIPTYYMQITWLPQSICDGIDQITRN 833



 Score =  271 bits (693), Expect(3) = 0.0
 Identities = 127/300 (42%), Positives = 186/300 (62%), Gaps = 11/300 (3%)
 Frame = -2

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            + R+F+WK S  KGINLVGW  I++ K  GGLG+R AR+ N  +LGKLVWDL +  NKLW
Sbjct: 830  ITRNFLWKDSNKKGINLVGWKKISRPKNLGGLGLRSARDANICLLGKLVWDLLQSTNKLW 889

Query: 1282 CHVLAEKYMGLSSILEVS-KKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPY 1106
             ++ + +Y     +L+ S +++ S TW+S+++A+ +L  G+ +R G+G SSFWY  W+  
Sbjct: 890  VNIFSHRYTTGFKLLQASVQQSSSNTWSSVIRAKDILHKGFSWRAGSGSSSFWYSPWSTL 949

Query: 1105 GKLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGY 926
            G +  LVP+VDIHD  L++KD+V       Q +YT++PQ   D I   Q   N ++ D +
Sbjct: 950  GYICTLVPYVDIHDIHLTVKDVVGGCFPYTQMIYTHLPQAALDTINNTQLSFNASLQDVF 1009

Query: 925  TWKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP 746
             W  + +G YTTKSG+ W++ + +QV  +    SW WIW++   EKI+F FW ACH+ +P
Sbjct: 1010 IWSHNKNGDYTTKSGYDWLLSQSEQV--IIPSHSWSWIWKIAGPEKIKFLFWLACHDAVP 1067

Query: 745  ----------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWL 596
                       + P C RCG  IE FLHCIRDC   R IWF +G    +F+ +++  DWL
Sbjct: 1068 TLSVLHHRNIVSSPICSRCGELIETFLHCIRDCRYSRSIWFHIGLTSSSFHGISSVHDWL 1127



 Score = 30.8 bits (68), Expect(3) = 0.0
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
 Frame = -1

Query: 593  CWC*EYCPSNIFFLAQVSIPSYRL*LNIN-CLPKLMKPSNQNXXXXXXSERSVTWHPEKD 417
            CW       NIF +            N+N C P LM  +N          R+  W+    
Sbjct: 1159 CWSAVRISYNIFSMVD----------NLNSCFPTLMDEANI---------RTTKWNCLDF 1199

Query: 416  CDVILNVDGSCLATWVKLGLVESCALMRENGSAVS 312
               +LN DGSC  T ++ G    C +   +G  +S
Sbjct: 1200 TGFVLNTDGSCSGTPIRCGF--GCIIRNSDGRFIS 1232



 Score = 95.5 bits (236), Expect = 3e-16
 Identities = 52/114 (45%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
 Frame = -3

Query: 369  QAGFGGILRTNEGKWIRGFSDNI-GFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            + GFG I+R ++G++I G S +I G S+ L A+L G+Y+GL      G   + CY+DS L
Sbjct: 1216 RCGFGCIIRNSDGRFISGASGHITGSSDILLAELSGIYQGLKLASSLGVTDLICYTDSLL 1275

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGAS 31
            S +L+  P + +H Y  +I+N+ + L R  N+ + HTLREGN  ADYLAKLGAS
Sbjct: 1276 SCNLIQGPCSSYHIYGVLIQNIKDHL-RQYNIHICHTLREGNQSADYLAKLGAS 1328


>dbj|GAU35685.1| hypothetical protein TSUD_162570 [Trifolium subterraneum]
          Length = 1375

 Score =  415 bits (1066), Expect(2) = 0.0
 Identities = 208/330 (63%), Positives = 250/330 (75%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            KVD P+ FK+FRPISLCNTIYKLITKI+                S FLPG+GT DNAI+L
Sbjct: 650  KVDCPKNFKEFRPISLCNTIYKLITKIM----------------SSFLPGKGTTDNAIIL 693

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QEA+HSM      KG + +KIDLEKAYD+V+WDFL+ CL   GFP  TIKLIM CVSSSS
Sbjct: 694  QEAIHSMKKSKRKKGDMVFKIDLEKAYDNVSWDFLQFCLQRSGFPPITIKLIMFCVSSSS 753

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            L+++WNG+RLPSF+P RGLRQGDPLSPYLFV+CME L+  I+  V D  WKPV+LS+ GP
Sbjct: 754  LAILWNGRRLPSFTPTRGLRQGDPLSPYLFVVCMECLSQVIIKAVDDGYWKPVRLSRNGP 813

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHLFF DDVLLF+KAT SQA  +A I   FA+ SGL+VNV+KS+  FS ST R K++S
Sbjct: 814  PLSHLFFVDDVLLFAKATNSQALNIATILTRFASCSGLKVNVSKSKVFFSPSTPRGKINS 873

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            IVT TGI    S +KYLGFPM+ GR+ + DFEF+ +KI  RLASW++ LL +AGR+TL K
Sbjct: 874  IVTHTGINRTHSLEKYLGFPMMHGRLRRRDFEFLEEKISQRLASWQHNLLNKAGRMTLVK 933

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SVLNSIP YYMQVAW+PQ+ C  ID +TRS
Sbjct: 934  SVLNSIPNYYMQVAWLPQTTCDSIDRMTRS 963



 Score =  291 bits (744), Expect(2) = 0.0
 Identities = 132/279 (47%), Positives = 177/279 (63%), Gaps = 10/279 (3%)
 Frame = -2

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            + R F+WKG+ +KGI+LVGWD ITK K  GGLGIR ARE NT++LGKLVW +H+  + LW
Sbjct: 960  MTRSFLWKGASNKGIHLVGWDKITKPKKLGGLGIRKAREVNTSLLGKLVWHMHQNCDTLW 1019

Query: 1282 CHVLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYG 1103
              VL  KY+       ++KK+GS+TWN+IMKA   LKDG+ FRLG+G SSFWY NW+  G
Sbjct: 1020 VQVLRHKYLNDDMFFSITKKSGSITWNAIMKALQALKDGFQFRLGDGNSSFWYSNWSGIG 1079

Query: 1102 KLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYT 923
             L+  VP+VDIHD Q+ ++D+  ++ W    LYT IP  V D+++ +  CLN  + D YT
Sbjct: 1080 NLADQVPYVDIHDLQMRVRDVYTNNKWNFNLLYTTIPADVMDHVKRLPVCLNSQVVDRYT 1139

Query: 922  WKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP- 746
            WKG+L+G+YT K G+ W+       TD   I SW W+W +P  EKI+FF W+A HN LP 
Sbjct: 1140 WKGNLNGLYTAKEGYYWLNRFAFSDTDTDDI-SWNWVWHIPAPEKIKFFIWSALHNALPT 1198

Query: 745  ---------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIW 656
                          C RC    E  LHC+R+C   ++ W
Sbjct: 1199 KSMLSHRGLLQANLCPRCNIEEESTLHCLRNCEFIKRFW 1237


>dbj|GAU37589.1| hypothetical protein TSUD_365100 [Trifolium subterraneum]
          Length = 648

 Score =  483 bits (1242), Expect(2) = 0.0
 Identities = 232/330 (70%), Positives = 273/330 (82%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            KVD P+ FKDFRPISLCNT+YKLITKILVNR+RP+L+ IIGP+QS FLPGRGTCDNAI+L
Sbjct: 55   KVDCPKHFKDFRPISLCNTLYKLITKILVNRLRPMLDSIIGPFQSSFLPGRGTCDNAIIL 114

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +++M      KG VAYKIDLEKAYD+VNW+FLRSCL +FGFP  T+KLIMHCVSSSS
Sbjct: 115  QEIIYNMQKSKAKKGDVAYKIDLEKAYDNVNWNFLRSCLHDFGFPQLTVKLIMHCVSSSS 174

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            LSLIWNGKRLP+FSP RGLRQGDPLSPYLFV+CMEKL+ AI   V +  WKP+++SK GP
Sbjct: 175  LSLIWNGKRLPNFSPTRGLRQGDPLSPYLFVLCMEKLSLAISAAVQNNSWKPLQISKNGP 234

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
              SHLFFADDVLLFSKAT +Q  ++AN+F  F+ ASGL++N AKSRALFSK  TR KVD 
Sbjct: 235  RFSHLFFADDVLLFSKATCAQGRVMANLFNNFSKASGLRINCAKSRALFSKGVTRRKVDK 294

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            + T++ IRS  S  KYLGFPMI GR  K DF F++DKI SRLASWKNK L + GR+TLAK
Sbjct: 295  MTTLSNIRSTTSLGKYLGFPMISGRAKKEDFNFILDKINSRLASWKNKFLNKLGRVTLAK 354

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SVLNSIP YYMQ+ W+P +IC++ID  TR+
Sbjct: 355  SVLNSIPTYYMQIHWLPSAICSKIDQTTRN 384



 Score =  199 bits (506), Expect(2) = 0.0
 Identities = 94/212 (44%), Positives = 131/212 (61%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R+FIWKG+ +KGI+LV W +I +TK  GGLG+R+ARETNTAMLGKLVWD+ +  NK W H
Sbjct: 383  RNFIWKGNTNKGIHLVNWHTIIQTKKDGGLGVRLARETNTAMLGKLVWDIQQNTNKPWVH 442

Query: 1276 VLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKL 1097
            ++ +KY+         +  GS  WNSI KA+ VL +GY FR+ +G SS WY  W     L
Sbjct: 443  MIKDKYLYNKMFFNTPRSYGSPIWNSISKAKQVLLEGYHFRISDGSSSLWYSPWLSKDLL 502

Query: 1096 SALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWK 917
               V +V I D+ L IKD+  +D+WQL  LYT +   V   I      LN    D + W 
Sbjct: 503  GRKVDYVAIQDSHLRIKDVFINDAWQLNLLYTPLQPDVITSIMNTHFILNNGTSDCFIWN 562

Query: 916  GSLDGVYTTKSGFKWIVDKRQQVTDVRTILSW 821
            G++ GVY+  SG+ W++++R  + D+  +L W
Sbjct: 563  GNISGVYSASSGYNWLLEQRANIQDL-LVLEW 593


>dbj|GAU35042.1| hypothetical protein TSUD_30080 [Trifolium subterraneum]
          Length = 724

 Score =  280 bits (716), Expect(4) = 0.0
 Identities = 131/218 (60%), Positives = 171/218 (78%)
 Frame = -1

Query: 2108 MHCVSSSSLSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKP 1929
            M CVSSSSL+++WNG+RLPSF+P RGLRQGDPLSPYLFV+CME L+  IL ++ D  W P
Sbjct: 1    MFCVSSSSLTIMWNGRRLPSFTPTRGLRQGDPLSPYLFVLCMEFLSQLILKNIDDGLWNP 60

Query: 1928 VKLSKKGPALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKS 1749
            V+LS+ GP LSHLFFADDVLLF+KAT+SQA ++A+  + FA  SGL+VN++KS+  FS +
Sbjct: 61   VRLSRNGPPLSHLFFADDVLLFAKATKSQARIIASTLKRFADYSGLKVNISKSKVFFSST 120

Query: 1748 TTRAKVDSIVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQ 1569
            T R K+ SIV  TGI   +S +KYLGFPM+ GR+ + DF F+ +KI  +LASW+++LL +
Sbjct: 121  TRRGKISSIVASTGINRTLSLEKYLGFPMMHGRLQRRDFAFLEEKISKKLASWQHRLLNK 180

Query: 1568 AGRLTLAKSVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            AGRLTL KSVLNSIP YYMQ+ W+PQ+    ID + R+
Sbjct: 181  AGRLTLVKSVLNSIPNYYMQITWLPQTTSDSIDKMARN 218



 Score =  279 bits (713), Expect(4) = 0.0
 Identities = 133/306 (43%), Positives = 185/306 (60%), Gaps = 3/306 (0%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R+F+WKGS + GI+LVGWD  TK K  GGLGIR  RE NT++LGKLVW++H+ N  LW  
Sbjct: 217  RNFLWKGSSNTGIHLVGWDKTTKPKKLGGLGIRKLREANTSLLGKLVWNIHQNNEALWVQ 276

Query: 1276 VLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKL 1097
            V+  KY+    +L ++KK G +TWN+IMKA   LK+GY FRLGNG SSFW+ NW+  G L
Sbjct: 277  VIRHKYIKGEVLLNITKKPGLVTWNAIMKALSALKEGYHFRLGNGNSSFWFTNWSGSGVL 336

Query: 1096 SALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWK 917
            +  V +VDIHD ++ ++D+  D  W    LYT +P  + + + +   CLNP+I+D YTWK
Sbjct: 337  ANQVMYVDIHDLEMRVRDVYIDGIWNFNALYTALPMEIKERLISFPICLNPSINDCYTWK 396

Query: 916  GSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLPFTV 737
            G+L G+YT   G+ W+ ++     +  +++SW W+W LP  EKI+FF WT  HN+L    
Sbjct: 397  GNLQGIYTAWDGYHWL-NRNAFSANPTSVVSWSWLWHLPAPEKIKFFIWTLLHNSL---- 451

Query: 736  PNCQRCGCAIEDFL---HCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWLLAGAKSTVPQ 566
                    A  D L     I DC     IW  LGF D  F+Q  +S  WL  G   +   
Sbjct: 452  --------ATRDMLTHRGIIHDCNFVYTIWKSLGFTDRNFFQEVDSSSWLRNGLSCSSMF 503

Query: 565  IFFSLL 548
            +F + +
Sbjct: 504  LFMAAI 509



 Score =  128 bits (322), Expect(4) = 0.0
 Identities = 58/115 (50%), Positives = 81/115 (70%)
 Frame = -3

Query: 378 NLGQAGFGGILRTNEGKWIRGFSDNIGFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDS 199
           N G +GFGG++R  +G WI GF  N+G +N LHA+L+ + +GL   W+     + CYSDS
Sbjct: 579 NPGISGFGGLIRNADGAWIHGFFGNLGVTNILHAELMAILKGLLLAWELNIKDLLCYSDS 638

Query: 198 ALSIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGA 34
           A +I L+T P++ WH YAAI+ N+ ++L+R+  V + HT REGNACADYLAK GA
Sbjct: 639 ATAIKLITEPVDVWHHYAAILNNIKDILNRDWQVSIFHTFREGNACADYLAKHGA 693



 Score = 22.3 bits (46), Expect(4) = 0.0
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = -1

Query: 566 NIFFLAQVSIPSYRL*LNINCLPKLMKPSNQNXXXXXXSERSVTWHPEKDCDVILNVDGS 387
           N   L    IP + L + I     L+K  + N        + V W+      +ILNVDGS
Sbjct: 517 NALCLDNELIPQFSLKMRIVDYALLLKNCHFNHQVTTLP-KIVRWNALGGTSMILNVDGS 575

Query: 386 CL 381
            +
Sbjct: 576 TI 577


>gb|PNX71724.1| ribonuclease H, partial [Trifolium pratense]
          Length = 585

 Score =  444 bits (1141), Expect(2) = e-176
 Identities = 207/330 (62%), Positives = 266/330 (80%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            KVD P+T+KDFRPISLCNT+YK+ITK+LVNR+RP+L  IIGPYQS FLPGRGT DNAIVL
Sbjct: 35   KVDPPKTYKDFRPISLCNTVYKIITKVLVNRLRPILANIIGPYQSSFLPGRGTSDNAIVL 94

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +H M      KG VA+K+DLEKA+D+VNWDFL++ L +FGFP+ TI+LIMHCV+SS+
Sbjct: 95   QEIIHFMRRSKKKKGYVAFKLDLEKAFDNVNWDFLKNSLQDFGFPDITIRLIMHCVTSSN 154

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            LS++WNG ++PSF P  GLRQGDPLSPYLF+ICMEKL+ AI + V ++ W PV +S  GP
Sbjct: 155  LSILWNGNQMPSFKPTHGLRQGDPLSPYLFIICMEKLSIAIHNAVLNKTWDPVHISNDGP 214

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHL FADDVLLF+KA  SQ   +  +F  F+ ASGL++N+ KSRA +S  T + KV+ 
Sbjct: 215  HLSHLLFADDVLLFTKAKNSQIRFITELFDRFSHASGLKINLTKSRAFYSTGTPQDKVNR 274

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            + +++GIRS  S DKYLGFP+++GR  K+DF F++DK+QSRLASW+N+LL + GR+ LA 
Sbjct: 275  LTSLSGIRSTTSLDKYLGFPILKGRPKKSDFLFIIDKMQSRLASWRNRLLNKPGRIALAS 334

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SVL+SIP YYMQ+AW+PQSIC  ID +TR+
Sbjct: 335  SVLSSIPTYYMQIAWLPQSICDSIDQVTRN 364



 Score =  205 bits (522), Expect(2) = e-176
 Identities = 95/225 (42%), Positives = 144/225 (64%), Gaps = 1/225 (0%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R+FIW+ + +KGI+LV W  I   K  GGLG+R AR+ NT +LGKLVWD+ +  +KLW +
Sbjct: 363  RNFIWRDANNKGIHLVSWKKIACPKKLGGLGLRSARDANTCLLGKLVWDILQSKDKLWVN 422

Query: 1276 VLAEKY-MGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGK 1100
            + + +Y  G+  +  +  +  S TW++I++A+ VL++G+ +R G+G SSFW+  WT  G 
Sbjct: 423  IFSHRYDAGVKILHAIBHQGSSSTWSAIIRAKTVLREGFTWRAGSGSSSFWFCPWTVLGC 482

Query: 1099 LSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTW 920
             S LVP++DIHD QL++KD++  ++   Q LYTN+P    D I       N  I+D + W
Sbjct: 483  FSKLVPYIDIHDLQLTVKDVISSNNPHSQILYTNLPHMALDIINNTHTIFNDQIEDTFIW 542

Query: 919  KGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKI 785
              + +GVYT KSG+ WI+   +QV    +  +W WIW+L V EKI
Sbjct: 543  SNNKNGVYTAKSGYDWILTCTEQVQP--SPHTWSWIWKLKVPEKI 585


>dbj|GAU51664.1| hypothetical protein TSUD_268670 [Trifolium subterraneum]
          Length = 1231

 Score =  407 bits (1045), Expect(2) = e-167
 Identities = 191/312 (61%), Positives = 245/312 (78%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            K+D P TFKDFRPISLCN +YK+ITK+LV+R+RP+L+ IIGPYQS FL GRGT +NAIVL
Sbjct: 531  KIDPPSTFKDFRPISLCNIVYKIITKVLVHRLRPLLDSIIGPYQSSFLLGRGTSNNAIVL 590

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +H M      KG VA+K+DLEKA+D+VNW FL+SCL +FGFP+ T +LIMHCV+SS+
Sbjct: 591  QEIIHFMRRSKKKKGYVAFKLDLEKAFDNVNWSFLQSCLQDFGFPDITTQLIMHCVTSST 650

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
             S++WNG ++P F P  GLRQGDPLSPYLF++CMEKL+ AI D V  R W PV +S  GP
Sbjct: 651  YSILWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAINDAVQQRHWDPVHISDNGP 710

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHL FADDVLLF+KA  S    + N+F+ F+ ASGL++N++KSRA +S  T   K+  
Sbjct: 711  HLSHLLFADDVLLFTKAKNSHIRFITNLFERFSNASGLKINLSKSRAFYSIGTPSTKITK 770

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            + +I+GIRS  S DKYLGFP+++GR  ++DF F+++K+QSRLASWKN+LL + GRL LA 
Sbjct: 771  LTSISGIRSTTSLDKYLGFPILKGRAKRSDFHFIINKMQSRLASWKNRLLNKPGRLALAS 830

Query: 1544 SVLNSIPIYYMQ 1509
            SVL+SIP YYMQ
Sbjct: 831  SVLSSIPNYYMQ 842



 Score =  213 bits (541), Expect(2) = e-167
 Identities = 98/209 (46%), Positives = 139/209 (66%), Gaps = 1/209 (0%)
 Frame = -2

Query: 1426 KGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCHVLAEKYMGLS 1247
            +GI+LVGWD I + K+ GGLGIR ARE N  +LGKLVWD+ + +NKLW ++L++KY   S
Sbjct: 842  QGIHLVGWDKIARPKIQGGLGIRPAREANICLLGKLVWDMVQSSNKLWVNLLSKKYTTGS 901

Query: 1246 SILEVSK-KNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKLSALVPFVDI 1070
            +IL+ S   N S  W+SI++A+ +LKDG+ +R G+G SSFW+  W+  G L  LVP+VDI
Sbjct: 902  TILQASSLSNASPIWSSIIRAKNILKDGFTWRAGSGSSSFWFSPWSSLGYLGTLVPYVDI 961

Query: 1069 HDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWKGSLDGVYTT 890
            HD  L++KD++  +S   Q LYT +P   SD I  +    N +IDD + W  + +G YTT
Sbjct: 962  HDLHLTVKDVLASNSPHSQILYTQLPPSASDLINNLNIRFNDSIDDVFIWSNNKNGSYTT 1021

Query: 889  KSGFKWIVDKRQQVTDVRTILSWLWIWRL 803
            KSG+ W++ +    T     LSW WIW+L
Sbjct: 1022 KSGYSWLLSQNGSATTPSLPLSWTWIWKL 1050



 Score = 99.8 bits (247), Expect(2) = 1e-20
 Identities = 54/124 (43%), Positives = 81/124 (65%), Gaps = 1/124 (0%)
 Frame = -3

Query: 369  QAGFGGILRTNEGKWIRGFSDNI-GFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            +AGFGG++R   G ++ GFS  I G S+ L A+L  +Y+GL+   +     + CYSD   
Sbjct: 1088 RAGFGGVIRNESGFYLSGFSGFIQGSSDILLAELFAIYKGLTLAKNMAIDELVCYSDYLH 1147

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGASGTSGWN 13
             I+L+  P  K+H YA +I+++ EL+S++ N+ L HTLREGN CA++LAKLGAS  S   
Sbjct: 1148 CINLIKGPSIKYHVYAVLIQDIKELMSQS-NITLCHTLREGNNCANFLAKLGASLDSDLT 1206

Query: 12   FYAT 1
             +A+
Sbjct: 1207 IHAS 1210



 Score = 31.2 bits (69), Expect(2) = 1e-20
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 449  ERSVTWHPEKDCDVILNVDGSCLATWVKLG 360
            E  V W+      VILNVDGSCL + V+ G
Sbjct: 1061 EIHVKWNNNNFSGVILNVDGSCLGSSVRAG 1090


>dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subterraneum]
          Length = 1075

 Score =  450 bits (1158), Expect(2) = e-166
 Identities = 208/329 (63%), Positives = 264/329 (80%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            K+DSP T++DFRPISLCN +YK+ITK+LV+R+RP+L+ IIGPYQS FLPGRGT DNAIVL
Sbjct: 296  KIDSPTTYRDFRPISLCNIVYKIITKVLVHRLRPILDSIIGPYQSSFLPGRGTSDNAIVL 355

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +H M      KG VA+K+DLEKA+D+VNWDFL+SCL +FGFPN TI+LIMHCV+SS+
Sbjct: 356  QEIIHFMRRSKRKKGFVAFKLDLEKAFDNVNWDFLKSCLHDFGFPNITIRLIMHCVTSSN 415

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
             SL+WNG +LPSF P  GLRQGDPLSPYLF++CMEKL+ +I   V    W P+++S  GP
Sbjct: 416  FSLLWNGNKLPSFKPTHGLRQGDPLSPYLFILCMEKLSISINSVVHQGAWDPIRISNTGP 475

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHL FADDVLLF+KA  SQ   + N+F  F  ASGL++N++KSRA +S    +AK++ 
Sbjct: 476  HLSHLLFADDVLLFTKAKNSQIRFITNLFDRFGLASGLKINLSKSRAFYSSGIPQAKINK 535

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            + +++GIRS VS DKYLGFP+++GR  +NDF F++DK+QSRLASWKN+LL + GRL LA 
Sbjct: 536  LTSLSGIRSTVSLDKYLGFPILKGRAKRNDFNFIIDKMQSRLASWKNRLLNKPGRLALAS 595

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTR 1458
            SVL+SIP YYMQ+AW+PQSIC  ID  TR
Sbjct: 596  SVLSSIPTYYMQIAWLPQSICDSIDQTTR 624



 Score =  168 bits (425), Expect(2) = e-166
 Identities = 77/140 (55%), Positives = 104/140 (74%), Gaps = 1/140 (0%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R F+WK S +KGI+LVGW+ I + K  GGLGIR ARE NT++LGKLVWD+ + +NKLW +
Sbjct: 624  RKFLWKDSNNKGIHLVGWNKIARPKNLGGLGIRPAREANTSLLGKLVWDMVQSSNKLWVN 683

Query: 1276 VLAEKYMGLSSILEV-SKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGK 1100
            +L+ KY+    IL   S   GS TW+SI+ A+ VLKDG+ +R G+G SSFW+ +W+P G 
Sbjct: 684  LLSNKYVAGPEILHSNSHSTGSPTWSSIIHAKNVLKDGFSWRAGSGSSSFWFSHWSPLGY 743

Query: 1099 LSALVPFVDIHDTQLSIKDI 1040
            L  LVP++DIHD QLS+KD+
Sbjct: 744  LGTLVPYIDIHDLQLSVKDL 763



 Score =  102 bits (255), Expect(3) = 5e-40
 Identities = 56/124 (45%), Positives = 83/124 (66%), Gaps = 1/124 (0%)
 Frame = -3

Query: 369  QAGFGGILRTNEGKWIRGFSDNIGFSNS-LHAKLLGLYRGLSFTWDQGYCLVKCYSDSAL 193
            +AG+GGI+R + G ++ GFS  I  S+  L A+L  +Y+GL+   D     + CYSDS L
Sbjct: 932  RAGYGGIIRNDSGFYLSGFSGFIRESSDILLAELYAIYQGLTLAKDLVIDELVCYSDSLL 991

Query: 192  SIHLVT*PLNKWHFYAAIIKNVSELLSRN*NVVLVHTLREGNACADYLAKLGASGTSGWN 13
             I+L+  P+ K+H YA +I+++ EL+S++ NV L HT REGN CAD+LAKLGAS  +   
Sbjct: 992  CINLIKGPIVKYHVYAVLIQDIKELISQS-NVTLCHTFREGNQCADFLAKLGASSDADLI 1050

Query: 12   FYAT 1
             +A+
Sbjct: 1051 IHAS 1054



 Score = 78.6 bits (192), Expect(3) = 5e-40
 Identities = 46/148 (31%), Positives = 66/148 (44%), Gaps = 26/148 (17%)
 Frame = -2

Query: 925  TWKGSLDGVYTTKSGFKWIVDKRQQ---------VTDVRTILSWLWIWRLPVS------- 794
            TW   +      K GF W                +  + T++ ++ I  L +S       
Sbjct: 707  TWSSIIHAKNVLKDGFSWRAGSGSSSFWFSHWSPLGYLGTLVPYIDIHDLQLSVKDLKLP 766

Query: 793  EKIRFFFWTACHNTLP-FTVPN---------CQRCGCAIEDFLHCIRDCPVPRQIWFILG 644
             KI FFFW  CHN++P  ++ N         C RCG   E FLHC+RDC   R IW  +G
Sbjct: 767  SKIIFFFWLVCHNSVPTLSLLNHRKMSNSFICARCGLQEETFLHCVRDCDFSRNIWHHIG 826

Query: 643  FCDPAFYQVTNSIDWLLAGAKSTVPQIF 560
            F DP F+  T++ +WL  G+  +    F
Sbjct: 827  FNDPTFFSFTDAREWLKVGSTGSQAYTF 854



 Score = 35.4 bits (80), Expect(3) = 5e-40
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -1

Query: 566  NIFFLAQVSIPSYRL*LNINCLPKLMKPSNQNXXXXXXSERSVTWHPEKDCDVILNVDGS 387
            N+  L   S    RL  NI+ +  +   S  +        R + W+ +    VILNVDGS
Sbjct: 866  NLMCLNNESWSLNRLSFNIHSMVDIFTSSFSSNSDGTSVSRLIKWNNDNFSCVILNVDGS 925

Query: 386  CLATWVKLG 360
            CL + V+ G
Sbjct: 926  CLGSPVRAG 934


>gb|PNX92520.1| ribonuclease H, partial [Trifolium pratense]
          Length = 865

 Score =  472 bits (1214), Expect(2) = e-161
 Identities = 224/330 (67%), Positives = 276/330 (83%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            K D P+ FKDFRPISLCNT+YKLITKILVNR+RP+L+ I+GP+QS FLPGRGT DNAI+L
Sbjct: 434  KEDCPKHFKDFRPISLCNTLYKLITKILVNRLRPMLDSIVGPFQSSFLPGRGTSDNAIIL 493

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +++M+     KG VAYKIDLEKAYD+V+W++LRSCL +FGFP  TIKLIMHCV SS+
Sbjct: 494  QEVIYNMNKSKAKKGDVAYKIDLEKAYDNVDWNYLRSCLHDFGFPPLTIKLIMHCVCSST 553

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            LSLIWNG+RLPSFSP RGLRQGDPLSPYLFV+CMEKL+ AI + V +  WKP+++SK GP
Sbjct: 554  LSLIWNGQRLPSFSPTRGLRQGDPLSPYLFVLCMEKLSLAISEAVQNNSWKPIQISKNGP 613

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
              SHLFFADDVLLFSKAT SQ  ++AN+F  F+ ASGL++N AKSRALFSK   R K+D 
Sbjct: 614  RFSHLFFADDVLLFSKATCSQGRIMANLFNNFSKASGLKINCAKSRALFSKGVPRRKMDK 673

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            + +++GIRS  +  KYLGFPMI GR+ K+D+ F++DK+ SRLASWKNK L + GR+TLAK
Sbjct: 674  LTSLSGIRSTNALGKYLGFPMITGRVRKDDYHFILDKLNSRLASWKNKFLNKPGRVTLAK 733

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SVLNSIP YYMQ++W+P SIC++ID LTR+
Sbjct: 734  SVLNSIPTYYMQISWLPSSICSQIDQLTRN 763



 Score =  127 bits (319), Expect(2) = e-161
 Identities = 57/106 (53%), Positives = 77/106 (72%)
 Frame = -2

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            L R+FIWKG+ + GI+LVGW SIT+TK  GGLG+R+ARETNTAMLGKLVWD+ + +NK W
Sbjct: 760  LTRNFIWKGNSNNGIHLVGWQSITQTKKDGGLGVRLARETNTAMLGKLVWDIQQNSNKPW 819

Query: 1282 CHVLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGN 1145
              ++ +KY+         +  GS  WNSI KA+  L+DGY +R+G+
Sbjct: 820  VLMIQDKYLSNKIFFSTPRSYGSPIWNSISKAKLALQDGYQYRIGD 865


>dbj|GAU22350.1| hypothetical protein TSUD_106780 [Trifolium subterraneum]
          Length = 1200

 Score =  330 bits (847), Expect(2) = e-156
 Identities = 160/270 (59%), Positives = 207/270 (76%)
 Frame = -1

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            +EA+HSM      KG + +KIDLEKAY +V+W+FL SCL++ GFP  +IKLIM CV+SSS
Sbjct: 479  REAIHSMRKSKRKKGDMVFKIDLEKAYHNVSWEFLHSCLIKNGFPPVSIKLIMFCVTSSS 538

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            LS++WNG RLPSF+P RGLRQGDPLSPYLFVICME L+++IL+++ D  WKP++LS+ GP
Sbjct: 539  LSIMWNGCRLPSFTPTRGLRQGDPLSPYLFVICMEFLSHSILNNMEDGHWKPMRLSRNGP 598

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHLFFADDVLLF+KATRSQ   +A+  + FA  SGL+VN  KS+  FS +T   K+ S
Sbjct: 599  PLSHLFFADDVLLFAKATRSQTLNIASTLKRFADYSGLKVNTNKSKVFFSSTTRNGKISS 658

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            IV  TGI   +S +KYLG PM+ GR+ + DFEF+ +KI  RL SW++ LL +AGR+TL K
Sbjct: 659  IVASTGINRTLSLEKYLGIPMMHGRLKRRDFEFLEEKISKRLDSWQHNLLNKAGRMTLVK 718

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SVLNSI  YYMQ+AW+PQ+ C  ID + R+
Sbjct: 719  SVLNSILNYYMQIAWLPQTTCDFIDKMGRN 748



 Score =  253 bits (646), Expect(2) = e-156
 Identities = 123/314 (39%), Positives = 178/314 (56%), Gaps = 11/314 (3%)
 Frame = -2

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            + R+FIWKGS D GI+LVGWD ITK K  GGLGIR AR+ NT++LGKLVW +H+ ++ LW
Sbjct: 745  MGRNFIWKGSSDTGIHLVGWDKITKAKKLGGLGIRKARDANTSLLGKLVWSVHQNSDALW 804

Query: 1282 CHVLAEKYMGLSSIL-EVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPY 1106
              V+  KY+   ++L   + + GS+TWN+I KA   LK+G                    
Sbjct: 805  VQVIKHKYLKEENLLNSTNNRTGSVTWNAIRKALSALKEG-------------------N 845

Query: 1105 GKLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGY 926
            G ++ LV FVDIHD ++ ++D+  D  W    LYT + Q + + +  I   LNP+++D Y
Sbjct: 846  GVIANLVMFVDIHDLEMRVRDVYKDGMWLFNSLYTTLSQEIKENLNFITISLNPSVNDCY 905

Query: 925  TWKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP 746
            TWKG+L+G+YT + G+ W+       T + ++ SW W+W +   EK++FFFWT  HN+LP
Sbjct: 906  TWKGNLNGIYTARDGYAWLNRHSFSATTI-SVASWSWLWHVSAPEKLKFFFWTMLHNSLP 964

Query: 745  ----------FTVPNCQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWL 596
                       T   C RC    E  +HC+RDC    +IW  +GF D  F+Q  +   WL
Sbjct: 965  TRDMLAHRGIITRNLCPRCSNHAETTIHCLRDCDFVNRIWKSIGFLDQNFFQGVDVYAWL 1024

Query: 595  LAGAKSTVPQIFFS 554
              G  S    +F +
Sbjct: 1025 HNGLNSPTMMLFIA 1038



 Score = 95.1 bits (235), Expect = 4e-16
 Identities = 40/90 (44%), Positives = 60/90 (66%)
 Frame = -3

Query: 378  NLGQAGFGGILRTNEGKWIRGFSDNIGFSNSLHAKLLGLYRGLSFTWDQGYCLVKCYSDS 199
            N G +GFGG++R  +G WI GF  N+G +N LH +L+ +Y+GL   W+     + CYSDS
Sbjct: 1110 NPGISGFGGLIRNADGAWIHGFFGNLGVTNILHPELMAIYKGLLLAWELNIKELWCYSDS 1169

Query: 198  ALSIHLVT*PLNKWHFYAAIIKNVSELLSR 109
             ++I L+T P + WH YAAI+ N+ ++L R
Sbjct: 1170 KMAIKLITDPTDVWHHYAAILNNIKDILDR 1199


>gb|PNY01679.1| ribonuclease H, partial [Trifolium pratense]
          Length = 995

 Score =  361 bits (926), Expect(2) = e-154
 Identities = 174/329 (52%), Positives = 233/329 (70%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            K DS  TFKDFRPISLCN  YKLI+KI+V+R+RP L+ I+ P Q+ F+PGR T DNAIVL
Sbjct: 426  KGDSQSTFKDFRPISLCNVTYKLISKIIVSRLRPFLDSIVSPLQNSFIPGRSTKDNAIVL 485

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE LH M       G + +K+DLEKAYD VNW FL+  L +F FP+  I LIM  +SSSS
Sbjct: 486  QEILHFMRKSKKKNGDMVFKLDLEKAYDRVNWSFLKDTLEKFNFPSKIISLIMFGISSSS 545

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
             +++WNG +  +F+P RGLRQGDPLSPYLFV+CME+L   I   V+D  WKP+++SK G 
Sbjct: 546  NTILWNGNKTEAFTPVRGLRQGDPLSPYLFVLCMERLGSMITKYVSDGAWKPMQISKDGT 605

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHLFFADDVLLF+KAT SQA +V  + + F+  SGL+V++AKS+   S    R   D 
Sbjct: 606  KLSHLFFADDVLLFAKATVSQARVVKEVLERFSALSGLKVSLAKSKFCTSTGVNRQLRDR 665

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            I   + I +   F++YLGF M  G++TK DF  + D++ ++LASWK++LL + GR+ LA 
Sbjct: 666  IAATSQIHATDRFERYLGFKMFYGKVTKQDFSDIYDRVSAKLASWKSRLLNKPGRVVLAN 725

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTR 1458
            SV++S+P Y+MQ+ W+PQS+C  +D   R
Sbjct: 726  SVISSLPSYHMQINWLPQSMCDELDRTVR 754



 Score =  216 bits (550), Expect(2) = e-154
 Identities = 98/237 (41%), Positives = 144/237 (60%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R FIWKG+ D G+ LVGW+ IT+ +  GGLG+R+AR  N ++LGKLVW++    +KLW  
Sbjct: 754  RRFIWKGTGDSGMFLVGWNKITQPRRFGGLGVRIARLQNVSLLGKLVWEILHSPDKLWVK 813

Query: 1276 VLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKL 1097
            +  EKY+    +   S   GS  WNS++KA  +LKDG+  ++GNG S+FWYD+W    KL
Sbjct: 814  LFEEKYLKGRLVFNTSIVGGSFIWNSLVKALQMLKDGFTLKIGNGNSNFWYDSWVFKEKL 873

Query: 1096 SALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWK 917
             + VPFV IHDT + I D+  +  W L  LYT +P  V+D I  IQP +   + D +TW 
Sbjct: 874  CSFVPFVAIHDTTVKINDVWSNGKWNLNNLYTILPTVVTDAILQIQPYMVDDLPDVWTWH 933

Query: 916  GSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP 746
             S  G++T K  ++W++        +   ++W WIW+L +   I+FF W   H ++P
Sbjct: 934  NSSTGMFTAKDAYEWLL----HPLPISNQVNWKWIWQLQLPANIQFFVWQVLHKSIP 986


>gb|PNX93586.1| ribonuclease H, partial [Trifolium pratense]
          Length = 953

 Score =  480 bits (1235), Expect = e-152
 Identities = 232/329 (70%), Positives = 273/329 (82%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            KVD P+ FK+FRPISLCNTIYKLITK+LVNR+RP L+QIIGPYQS FLPGRGTCDNAIVL
Sbjct: 526  KVDYPQNFKEFRPISLCNTIYKLITKVLVNRLRPYLDQIIGPYQSSFLPGRGTCDNAIVL 585

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +HSM      KG V YKIDLEKAYDHVNW+FLRSCL++FGFP  TI LIMHCVS+SS
Sbjct: 586  QEVIHSMKKSKKKKGDVVYKIDLEKAYDHVNWEFLRSCLIQFGFPPITITLIMHCVSASS 645

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            LSLIWNG+RLPSFSP RGLRQGDPLSPYLFVICME L++AIL  V +  WKPV +S+ GP
Sbjct: 646  LSLIWNGQRLPSFSPTRGLRQGDPLSPYLFVICMESLSHAILQAVDNNAWKPVSISRNGP 705

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHLFFADDVLLFSKAT SQA+++  I  +FA  SGL+VN+ KSRA FS +T + K+DS
Sbjct: 706  GLSHLFFADDVLLFSKATVSQATVIEGILTKFANLSGLRVNIQKSRAFFSATTRQNKIDS 765

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            IV+ITGI++  S +KYLGFP+I GR+ K D++F +DKIQ RLASWKNKLL +AGRL L +
Sbjct: 766  IVSITGIQNTNSLEKYLGFPIIHGRLCKRDYDFFIDKIQHRLASWKNKLLNKAGRLALVQ 825

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTR 1458
            SVL SIP YYMQ+ W+P SIC  +D ++R
Sbjct: 826  SVLTSIPTYYMQLNWLPSSICDYMDRISR 854



 Score = 85.5 bits (210), Expect = 3e-13
 Identities = 36/59 (61%), Positives = 48/59 (81%)
 Frame = -2

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKL 1286
            + R F+W+G+ D+GI+LVGW+ I + K +GGLGIR ARE+NTAMLGKLVWD+H   +KL
Sbjct: 852  ISRKFLWRGTNDRGIHLVGWEKIAQPKKNGGLGIRSARESNTAMLGKLVWDIHSKKDKL 910


>gb|PNX93226.1| ribonuclease H, partial [Trifolium pratense]
          Length = 851

 Score =  470 bits (1210), Expect(2) = e-151
 Identities = 223/329 (67%), Positives = 269/329 (81%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            K+D P+ FKDFRPISLCNT+YKLITK+LVNR+RP+L+ IIGP+QS FLPGRGTCDNAI+L
Sbjct: 455  KIDCPKHFKDFRPISLCNTLYKLITKVLVNRLRPMLDSIIGPFQSSFLPGRGTCDNAIIL 514

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE +H M+     KG VA+KIDLEKAYD+VNW++LRSCL++FGFP   IKLIMHCVSSSS
Sbjct: 515  QEIIHHMNKSKSKKGDVAFKIDLEKAYDNVNWNYLRSCLLDFGFPPIIIKLIMHCVSSSS 574

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            LSLIWNGKRLP+F+P RGLRQGDPLSPYLFVICMEKL+ AI + V    W PV++SK GP
Sbjct: 575  LSLIWNGKRLPNFTPTRGLRQGDPLSPYLFVICMEKLSLAISEAVQKNSWSPVQISKNGP 634

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
              SHLFFADDVLLFSKAT +Q   +AN+F  F+ ASGL++N  KSR LFSK   R+K D 
Sbjct: 635  RFSHLFFADDVLLFSKATCAQGRTIANLFNSFSIASGLKINCVKSRVLFSKGVPRSKRDK 694

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            I  ++ IRS  S   YLGFPM+ GR+ K DF F++DK+ SRLASWKNKLL + GR+TLAK
Sbjct: 695  ITNLSSIRSTNSLGNYLGFPMVTGRVKKADFAFIIDKLNSRLASWKNKLLSKPGRVTLAK 754

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTR 1458
            SV+NSIP YYMQ++W+P SIC++ID +TR
Sbjct: 755  SVMNSIPTYYMQISWLPSSICSQIDMMTR 783



 Score = 95.9 bits (237), Expect(2) = e-151
 Identities = 41/69 (59%), Positives = 56/69 (81%)
 Frame = -2

Query: 1462 LDRDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLW 1283
            + R FIWKG+ +KGI+LVGW+ +TK+K  GGLG+R+ARE NTAMLGKLVW L + ++K W
Sbjct: 781  MTRKFIWKGNSNKGIHLVGWNVVTKSKEDGGLGVRLAREANTAMLGKLVWGLQQQSDKPW 840

Query: 1282 CHVLAEKYM 1256
             H+L +KY+
Sbjct: 841  VHMLQDKYL 849


>gb|PNY14872.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1396

 Score =  356 bits (913), Expect(2) = e-150
 Identities = 172/329 (52%), Positives = 232/329 (70%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            K ++  TFKDFRPISLCN  YKLI+KI+V+R+RP L+ II P+Q+ F+PGR T DNAIVL
Sbjct: 827  KGENQSTFKDFRPISLCNVTYKLISKIIVSRLRPFLDDIISPFQNSFIPGRSTKDNAIVL 886

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QE LH M       G + +K+DLEKAYD VNW FLR  L +F FP   I LIM  +S+SS
Sbjct: 887  QEVLHVMRKSKKKNGDMVFKLDLEKAYDRVNWTFLRDTLTKFNFPPKIISLIMFGISASS 946

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
             S++WNG +  +F+P RGLRQGDPLSPYLFV+CME+L   + + V+   WKP++L K G 
Sbjct: 947  NSILWNGSKTEAFTPMRGLRQGDPLSPYLFVLCMERLGMMVSNRVSTGDWKPMQLVKNGT 1006

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             +SHLFFADDVLLF+KA+ SQAS+V  +   F + SGL++++ KS+   S    R   D+
Sbjct: 1007 KISHLFFADDVLLFAKASPSQASIVKEVLDLFCSMSGLKISLGKSKFCTSGGVCRRVRDN 1066

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            I T T I +   F+KYLGF M+ GR+ K DF  V D++ ++LASWK++LL + GR+ LA 
Sbjct: 1067 IFTTTQIHATSRFEKYLGFKMLHGRIRKLDFVDVYDRVSTKLASWKSRLLNKPGRVVLAN 1126

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTR 1458
            SV++S+P Y+MQ+ W+PQ +C  +D   R
Sbjct: 1127 SVISSLPAYHMQINWLPQGMCDDLDRTVR 1155



 Score =  208 bits (530), Expect(2) = e-150
 Identities = 93/237 (39%), Positives = 144/237 (60%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R FIWKG+ D G++LV W+ IT+ +  GGLG+RV+R  N ++LGKL+W++    +KLW  
Sbjct: 1155 RRFIWKGTGDVGMHLVSWNKITQPRRLGGLGVRVSRLQNISLLGKLIWEILNSPDKLWVK 1214

Query: 1276 VLAEKYMGLSSILEVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYGKL 1097
            +  EKY+    I + S   GS+ WNS+ K+   L+DG+  ++G+G S+FW+D W     L
Sbjct: 1215 LFEEKYLKGRLIFKASVSGGSVIWNSVAKSIQRLRDGFTIKIGDGNSNFWFDPWVFKENL 1274

Query: 1096 SALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYTWK 917
             ++VPFV I DT   IKD+ +D SW  Q LYT +P +    I ++QP +   I D + W+
Sbjct: 1275 GSMVPFVAIQDTSTKIKDVWYDGSWNFQNLYTIVPDFARKEIVSLQPRIVNGIPDIWVWQ 1334

Query: 916  GSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLP 746
             S  G+YT K  + W+++     + +    +W WIWRL +   I+FF W   H+++P
Sbjct: 1335 SSSVGIYTVKDAYNWLLEP----SGINNHSNWQWIWRLTLPASIQFFIWQLAHDSIP 1387


>gb|KYP37151.1| Putative ribonuclease H protein At1g65750 family [Cajanus cajan]
          Length = 1560

 Score =  373 bits (957), Expect(2) = e-146
 Identities = 182/329 (55%), Positives = 238/329 (72%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            KVD P + KDFRPISLCN  +K+I+K+LV R+RP L+ +IGP+Q  F+PGRGT D++I+ 
Sbjct: 740  KVDHPVSLKDFRPISLCNVAWKVISKVLVARLRPFLQDVIGPFQGSFIPGRGTRDHSIIA 799

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QEA H +       G +A KIDLEKAYD V WDFL S LV+FGFP  T +LIM  + +SS
Sbjct: 800  QEAFHFVRKEGSRVGSLALKIDLEKAYDRVRWDFLESTLVQFGFPRITTQLIMWGLKNSS 859

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            +SL+WNG  LPSF P+RGLRQGDPLSPYLFV CME+LA  I + + +  WKP+KLS  G 
Sbjct: 860  ISLLWNGSTLPSFVPSRGLRQGDPLSPYLFVFCMERLALRISELLQEGLWKPIKLSHGGL 919

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
            +LSHLFFADD+LLF +A+  QA LVA+  +EF+ ASGL+VN+AKS+ + S+  +R ++D+
Sbjct: 920  SLSHLFFADDILLFCQASDDQAQLVASTLEEFSRASGLRVNLAKSKFVSSRKVSRRRIDT 979

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            +    GI       KYLG PM  G+    DF  V+DKIQSRL +WK+KLL +AG+L L K
Sbjct: 980  LEGFLGIGHTAQIGKYLGVPMTHGQPRCADFYDVLDKIQSRLEAWKSKLLNKAGKLCLVK 1039

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTR 1458
            S ++SIP+Y MQ  W+PQ++C RID   R
Sbjct: 1040 STISSIPVYSMQTMWLPQAVCNRIDQACR 1068



 Score =  177 bits (448), Expect(2) = e-146
 Identities = 97/299 (32%), Positives = 150/299 (50%), Gaps = 12/299 (4%)
 Frame = -2

Query: 1456 RDFIW-KGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWC 1280
            R  +W K    +  +LV WD +T+ +  GGLG+R AR+ N ++LGKLVWD+     K W 
Sbjct: 1068 RRMLWAKSDNTRFWSLVRWDVVTQPQELGGLGVREARKVNVSLLGKLVWDMLTAPQKPWV 1127

Query: 1279 HVLAEKYMGLSSIL-EVSKKNGSLTWNSIMKARGVLKDGYDFRLGNGESSFWYDNWTPYG 1103
             +L++ Y+  +SIL   ++K  S TW+S++KA   L++G++  LG+G SS WY +W+  G
Sbjct: 1128 QLLSDCYLHGNSILCAPNRKGASPTWSSLIKALPYLREGFEPHLGSGASSLWYKDWSGTG 1187

Query: 1102 KLSALVPFVDIHDTQLSIKDIVHDDSWQLQRLYTNIPQYVSDYIQAIQPCLNPTIDDGYT 923
                 VPFV I DT  ++ D     +W    L+  +P  +   +Q +    +    D + 
Sbjct: 1188 LWCQKVPFVHIADTNKTVADCWVSGNWNFTALHIVLPAELLLLVQRLSVVNSSLGLDHFV 1247

Query: 922  WKGSLDGVYTTKSGFKWIVDKRQQVTDVRTILSWLWIWRLPVSEKIRFFFWTACHNTLPF 743
            W+G   G YT  SG++++      V        W   W+L + EK++FF W   H+ LP 
Sbjct: 1248 WRGDSSGCYTASSGYRFLT----TVLPTGGEDVWKKAWKLRIPEKVKFFLWQCLHSALPT 1303

Query: 742  TVPN----------CQRCGCAIEDFLHCIRDCPVPRQIWFILGFCDPAFYQVTNSIDWL 596
                          C RC C  E  LH +RDCP  R++    G     F+ V +   WL
Sbjct: 1304 NQVRADRRLAESGACSRCSCPHETILHALRDCPYSREVLLSGGISMGWFFSVMDCFQWL 1362


>gb|PNX84261.1| ribonuclease H, partial [Trifolium pratense]
          Length = 574

 Score =  437 bits (1124), Expect = e-140
 Identities = 212/330 (64%), Positives = 259/330 (78%)
 Frame = -1

Query: 2444 KVDSPRTFKDFRPISLCNTIYKLITKILVNRIRPVLEQIIGPYQSIFLPGRGTCDNAIVL 2265
            KVD P  FK+FRPISLCNTIYKLITKI+VNR+RP L QI+GP+QS FLPG+GT DNAI+L
Sbjct: 173  KVDCPTNFKEFRPISLCNTIYKLITKIMVNRLRPHLNQIVGPFQSSFLPGKGTTDNAIIL 232

Query: 2264 QEALHSMHXXXXXKGGVAYKIDLEKAYDHVNWDFLRSCLVEFGFPNGTIKLIMHCVSSSS 2085
            QEA+HSM      KG + +KIDLEKAYD+V+W+FL+ CL   GFP  TI LIM+CVSSSS
Sbjct: 233  QEAIHSMKKSKRKKGDMVFKIDLEKAYDNVSWEFLQHCLQRNGFPPSTISLIMYCVSSSS 292

Query: 2084 LSLIWNGKRLPSFSPNRGLRQGDPLSPYLFVICMEKLAYAILDDVADRKWKPVKLSKKGP 1905
            L ++WNG RLPSF+P RGLRQGDPLSPYLFVICME L+  I+ +V +  WKPV+LS+ GP
Sbjct: 293  LIILWNGCRLPSFTPTRGLRQGDPLSPYLFVICMEFLSQIIIREVEEGHWKPVRLSRNGP 352

Query: 1904 ALSHLFFADDVLLFSKATRSQASLVANIFQEFATASGLQVNVAKSRALFSKSTTRAKVDS 1725
             LSHLFFADDVLLF+KAT+SQA  +A+    FA  SGL+VNV+KS+  FS +T R K+ S
Sbjct: 353  PLSHLFFADDVLLFAKATKSQALNIASTLTRFANYSGLKVNVSKSKVFFSSTTKRGKITS 412

Query: 1724 IVTITGIRSAVSFDKYLGFPMIQGRMTKNDFEFVVDKIQSRLASWKNKLLIQAGRLTLAK 1545
            IV  TGI    S +KYLGFPM+  R+ + D+EF+ +K+  RLASWK+ LL +AGR+TL K
Sbjct: 413  IVNSTGINRTYSLEKYLGFPMLHERLHRRDYEFLEEKVSQRLASWKHNLLNKAGRMTLVK 472

Query: 1544 SVLNSIPIYYMQVAWIPQSICTRIDNLTRS 1455
            SVLNSIP YYMQVAW+PQS C  ID + R+
Sbjct: 473  SVLNSIPNYYMQVAWLPQSTCDSIDRMARN 502



 Score = 92.4 bits (228), Expect = 1e-15
 Identities = 38/67 (56%), Positives = 50/67 (74%)
 Frame = -2

Query: 1456 RDFIWKGSQDKGINLVGWDSITKTKLHGGLGIRVARETNTAMLGKLVWDLHKGNNKLWCH 1277
            R+F+WKG+ + GINLVGWD ITK K  GGLGIR  RE NT++LGKLVW +H+  + LW  
Sbjct: 501  RNFLWKGTSNTGINLVGWDKITKPKSKGGLGIRKTREANTSLLGKLVWSIHQNKDALWVQ 560

Query: 1276 VLAEKYM 1256
            ++  KY+
Sbjct: 561  IMKHKYV 567