BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus23_contig00001782
         (1391 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PRQ33949.1| putative RNA-directed DNA polymerase [Rosa chinen...   547   0.0  
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   568   0.0  
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   570   0.0  
gb|PNX81877.1| hypothetical protein L195_g037902, partial [Trifo...   546   0.0  
gb|PNX85069.1| retrotransposon-related protein [Trifolium pratense]   540   0.0  
gb|PRQ38020.1| putative RNA-directed DNA polymerase [Rosa chinen...   541   0.0  
dbj|GAU13002.1| hypothetical protein TSUD_173010 [Trifolium subt...   548   0.0  
gb|KZV47100.1| retrovirus-related Pol polyprotein from transposo...   524   e-180
emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]   541   e-179
gb|PRQ55184.1| putative RNA-directed DNA polymerase [Rosa chinen...   521   e-179
gb|PNX87200.1| copia-type polyprotein, partial [Trifolium pratense]   516   e-179
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            545   e-179
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   544   e-178
gb|AFP55578.1| copia-type polyprotein [Rosa rugosa]                   536   e-176
gb|KYP44586.1| Retrovirus-related Pol polyprotein from transposo...   523   e-176
gb|PNY15642.1| copia-type polyprotein [Trifolium pratense]            524   e-176
gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]            538   e-176
gb|KYP69898.1| Retrovirus-related Pol polyprotein from transposo...   511   e-175
gb|PNY07765.1| putative copia-type polyprotein [Trifolium pratense]   536   e-175
dbj|GAU31929.1| hypothetical protein TSUD_271130, partial [Trifo...   511   e-175

>gb|PRQ33949.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 425

 Score =  547 bits (1410), Expect = 0.0
 Identities = 261/409 (63%), Positives = 331/409 (80%)
 Frame = +3

Query: 3    KVHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIET 182
            KV+QLDVKSAFL+GEL E+VY++QPKG+  K + +KVYKL+KALYGLKQAPRAW+SRIE 
Sbjct: 17   KVYQLDVKSAFLHGELMEDVYVEQPKGFEKKEELNKVYKLRKALYGLKQAPRAWFSRIEA 76

Query: 183  YFGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMT 362
            YF ++GF KCP E  LFVKT   GKLL++SLYVDDLIY GND+ M   FK+ M +EF+M+
Sbjct: 77   YFLREGFEKCPSEQTLFVKTNNRGKLLIVSLYVDDLIYTGNDDAMMREFKDSMMKEFDMS 136

Query: 363  DLGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGR 542
            DLG+M +FLG+EV Q  +GI ISQ+KYA +VLRRFGME+SN V NPIVPG K+SKD +G 
Sbjct: 137  DLGKMRYFLGLEVQQLQDGIFISQKKYAMDVLRRFGMEKSNAVLNPIVPGFKISKDESGI 196

Query: 543  AVDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLC 722
             VD T YKQ++GSLMYLT+TRPDLMY V L +RYM +P E H+MA KR++RYVKGT+   
Sbjct: 197  EVDGTFYKQLVGSLMYLTSTRPDLMYAVSLIARYMSQPTELHLMAAKRVLRYVKGTVGFG 256

Query: 723  ILYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLST 902
            ILY+K+         L  +TDSDY G ++DR+STSGY F++ S  V+WSS+KQP+VTLST
Sbjct: 257  ILYKKE-----ASGVLTAYTDSDYAGCLEDRKSTSGYAFMMSSGAVAWSSRKQPIVTLST 311

Query: 903  TEAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGI 1082
            TEAEF+A+AACACQ+IWM+R+L+ LG +    T ++CDN+S+IKLSKNPV+HGRSKHIG+
Sbjct: 312  TEAEFVAAAACACQAIWMKRVLKMLGCEGDKCTTVFCDNSSTIKLSKNPVMHGRSKHIGV 371

Query: 1083 RFHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTE 1229
            RFHFLRDL K+ VV+LV+C S EQ+AD++TKPLKL+ F +LR  LG+ E
Sbjct: 372  RFHFLRDLSKEGVVQLVHCGSQEQIADVLTKPLKLEQFQKLRGLLGVCE 420


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  568 bits (1465), Expect = 0.0
 Identities = 274/407 (67%), Positives = 327/407 (80%)
 Frame = +3

Query: 3    KVHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIET 182
            KV+QLDVKSAFL+GEL E V+IDQP+GYV +G E KVYKL KALYGLKQAPRAWYSRIE 
Sbjct: 636  KVYQLDVKSAFLHGELTEAVFIDQPQGYVKEGDELKVYKLNKALYGLKQAPRAWYSRIEA 695

Query: 183  YFGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMT 362
            YF K+GF +CPHEH LFVK   GGK+L++SLYVDDLI+ GNDE M   FK+ MK EF+M+
Sbjct: 696  YFIKEGFERCPHEHTLFVKLSEGGKILIVSLYVDDLIFTGNDEYMFEEFKKSMKDEFDMS 755

Query: 363  DLGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGR 542
            DLG M +FLGVEV Q   GI+I Q+KYA E+L RFGME++N+V NPIVPG KL KD  G 
Sbjct: 756  DLGMMRYFLGVEVVQNEAGIYICQKKYASEILERFGMEKANSVRNPIVPGFKLMKDEGGV 815

Query: 543  AVDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLC 722
             VD T+YKQ++GSLMYLTATRPDLMY V L SR+M  P E HM A KR++RY+KGT+NL 
Sbjct: 816  KVDATMYKQIVGSLMYLTATRPDLMYVVSLISRFMSSPTELHMQAAKRVLRYLKGTVNLG 875

Query: 723  ILYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLST 902
            +LYR+  + +L+      FTDSDY GD+DDR+STSGY+F+     VSWSSKKQPVVTLST
Sbjct: 876  VLYRRNGEEKLE-----AFTDSDYAGDVDDRKSTSGYIFMFSDGAVSWSSKKQPVVTLST 930

Query: 903  TEAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGI 1082
            TEAEFIA+A CACQ +WMRRI +RLG  Q G T +YCDN+S+IKLSKNPV+HGRSKHI +
Sbjct: 931  TEAEFIAAAYCACQGVWMRRIFERLGHAQRGCTTVYCDNSSTIKLSKNPVMHGRSKHIDV 990

Query: 1083 RFHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGM 1223
            RFHFLR L KD  VELVYC++ +Q+AD MTKPLKL+ F +LR+ LGM
Sbjct: 991  RFHFLRQLTKDGNVELVYCNTQDQIADAMTKPLKLEVFEKLRDLLGM 1037


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  570 bits (1470), Expect = 0.0
 Identities = 274/407 (67%), Positives = 328/407 (80%)
 Frame = +3

Query: 3    KVHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIET 182
            KV+QLDVKSAFL+GEL E V+IDQP+GYV +G E KVYKL KALYGLKQAPRAWYSRIE 
Sbjct: 908  KVYQLDVKSAFLHGELTEAVFIDQPQGYVKEGDELKVYKLNKALYGLKQAPRAWYSRIEA 967

Query: 183  YFGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMT 362
            YF K+GF +CPHEH LFVK+  GGK+L++SLYVDDLI+ GNDE M   FK+ MK EF+M+
Sbjct: 968  YFIKEGFERCPHEHTLFVKSSEGGKILIVSLYVDDLIFTGNDEYMFEEFKKSMKDEFDMS 1027

Query: 363  DLGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGR 542
            DLG M +FLGVEV Q   GI+I Q+KYA E+L RFGME++N+V NPIVPG KL KD  G 
Sbjct: 1028 DLGMMRYFLGVEVVQNEAGIYICQKKYASEILERFGMEKANSVRNPIVPGIKLMKDEGGV 1087

Query: 543  AVDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLC 722
             VD T+YKQ++GSLMYLTATRPDLMY V L SR+M  P E HM A KR++RY+KGT+NL 
Sbjct: 1088 KVDATMYKQIVGSLMYLTATRPDLMYVVSLISRFMSSPTELHMQAAKRVLRYLKGTINLG 1147

Query: 723  ILYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLST 902
            +LYR+  + +L+      FTDSDY GD+DDR+STSGY+F+     VSWSSKKQPVVTLST
Sbjct: 1148 VLYRRNGEEKLE-----AFTDSDYAGDVDDRKSTSGYIFMFSDGAVSWSSKKQPVVTLST 1202

Query: 903  TEAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGI 1082
            TEAEFIA+A CACQ +WMRRI +RLG  Q G T +YCDN+S+IKLSKNPV+HGRSKHI +
Sbjct: 1203 TEAEFIAAAYCACQGVWMRRIFERLGHAQRGCTTVYCDNSSTIKLSKNPVMHGRSKHIDV 1262

Query: 1083 RFHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGM 1223
            RFHFLR L KD  VELVYC++ +Q+AD MTKPLKL+ F +LR+ LGM
Sbjct: 1263 RFHFLRQLTKDGTVELVYCNTQDQIADAMTKPLKLEVFEKLRDLLGM 1309


>gb|PNX81877.1| hypothetical protein L195_g037902, partial [Trifolium pratense]
          Length = 575

 Score =  546 bits (1407), Expect = 0.0
 Identities = 262/401 (65%), Positives = 325/401 (81%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            V+QLDVKSAFL+GELNE+V++DQP+GYV KG E KVYKL++ALYGLKQAPRAWYSRIE Y
Sbjct: 180  VYQLDVKSAFLHGELNEQVFVDQPQGYVKKGDELKVYKLKRALYGLKQAPRAWYSRIEAY 239

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F K+GF +CP+EH LFVK    G +L++SLYVDDLI+ GNDE M   FK+ M++EF M+D
Sbjct: 240  FTKEGFERCPYEHTLFVKQSETGNILIVSLYVDDLIFTGNDENMFKEFKKSMEKEFNMSD 299

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG+M++FLGVEV Q  EGI+I Q+KY  ++L RFGME+SN   NPI PG KL KD NG  
Sbjct: 300  LGKMHYFLGVEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPGCKLIKDENGVK 359

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            VD T+YKQ++G LMYL ATRPDLMY + L SR+M  P E HM AVKR++RY+ GT+NL I
Sbjct: 360  VDATMYKQVVGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGI 419

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
            +Y++    +L+      +TDSDY GD+DDR+STSGYVF+L +  VSWSSKKQPVVTLSTT
Sbjct: 420  MYKRGGNEKLE-----AYTDSDYAGDLDDRKSTSGYVFMLSAGAVSWSSKKQPVVTLSTT 474

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAEFIA+A+CACQSIWM+R+L++LG  Q G+  +YCDN+S+IKLSKNPVLHGRSKHI +R
Sbjct: 475  EAEFIAAASCACQSIWMQRVLEKLGHIQVGSITVYCDNSSTIKLSKNPVLHGRSKHIDVR 534

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLR 1208
            FHFLRDL KD  +ELV+C+S  Q+ADIMTKPLK + F +LR
Sbjct: 535  FHFLRDLTKDGTLELVHCNSQYQIADIMTKPLKFEVFEKLR 575


>gb|PNX85069.1| retrotransposon-related protein [Trifolium pratense]
          Length = 538

 Score =  540 bits (1390), Expect = 0.0
 Identities = 256/409 (62%), Positives = 325/409 (79%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            ++QLDVKSAFL+GELNE+V+++QP+GY  K   +KVYKL+KALYGLKQAPR+W+SRIE Y
Sbjct: 131  IYQLDVKSAFLHGELNEDVFVEQPRGYEKKDSPNKVYKLKKALYGLKQAPRSWFSRIEAY 190

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F K+GF KC  EH LFVK    GK+L++S+YVDDLI+ G+DE M  +FK  M  EF+M+D
Sbjct: 191  FVKEGFLKCHSEHTLFVKISKEGKILIVSIYVDDLIFTGDDESMFEDFKNSMMHEFDMSD 250

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG+M +FLG+EV Q N+GI+I Q+KYA EVLRRFGME SN+V NPIVPG K+ KD  G  
Sbjct: 251  LGKMRYFLGIEVLQRNDGIYICQKKYALEVLRRFGMEGSNSVHNPIVPGFKICKDKEGVK 310

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            VD T +KQ++GSLMYLT TRPDLM+ V L SRYM +P E H+ A KR++RY+KGT +  I
Sbjct: 311  VDATFFKQVVGSLMYLTTTRPDLMFVVSLISRYMAQPTELHLQAAKRVLRYLKGTADFGI 370

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
             Y+K          L  + DSDY GD++DR+STSGYVF++ S  VSWSSKKQP+VTLSTT
Sbjct: 371  FYKKG-----GSENLVAYADSDYAGDLEDRKSTSGYVFLMSSGAVSWSSKKQPIVTLSTT 425

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAEF+A+A CA Q +WMRRIL +LG  Q G+TV++CDN+S+IKLSKNPVLHGR KHI +R
Sbjct: 426  EAEFVAAAYCASQIVWMRRILDKLGHSQSGSTVMFCDNSSTIKLSKNPVLHGRCKHIDVR 485

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTEV 1232
            FHFLRDL K+ +VELV+C + EQVAD+MTKPLKLD F++LR+ LG+ ++
Sbjct: 486  FHFLRDLTKEGIVELVFCGTQEQVADVMTKPLKLDIFLKLRSLLGVCQI 534


>gb|PRQ38020.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 610

 Score =  541 bits (1395), Expect = 0.0
 Identities = 263/409 (64%), Positives = 324/409 (79%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            ++QLDVKSAFL+GEL E V+++QP+G+ VKG E+KVYKL+KALYGLKQAPRAWYSRIE Y
Sbjct: 203  IYQLDVKSAFLHGELTEAVFVEQPQGFEVKGGENKVYKLKKALYGLKQAPRAWYSRIENY 262

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F K+GF KC  EH LF+K  AGGK L++SLYVDDLI+ GN E+M   FKE M QEF+M+D
Sbjct: 263  FVKEGFEKCDFEHTLFIKMGAGGKCLIVSLYVDDLIFTGNCEKMFVKFKESMMQEFDMSD 322

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG+M +FLGVEV Q  EGI+ISQ+K+A+E+L RFGM+  N+V NPIVPG K+ KD NG  
Sbjct: 323  LGKMRYFLGVEVLQCTEGIYISQKKFAKELLERFGMDGCNSVHNPIVPGVKIGKDENGVR 382

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            VD T YKQM+GSLMYLT TRPDLM+ V + SR+M  P E H   VKR++RYV GT+ L I
Sbjct: 383  VDATTYKQMVGSLMYLTVTRPDLMFVVCMASRFMANPTELHFQIVKRVLRYVGGTVELGI 442

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
             Y+K+    L+      +TDSDY GD+ DRRSTSGYVF L    VSW SKKQPVVTLSTT
Sbjct: 443  FYKKRGDQMLQ-----AYTDSDYAGDVSDRRSTSGYVFSLSGGAVSWMSKKQPVVTLSTT 497

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAE++A+A+CA Q IWM+R+L++LG  Q+ + +I CDN+S+IKLSKNPVLHGRSKHI +R
Sbjct: 498  EAEYVAAASCATQGIWMQRVLEKLGLTQNCSVIIKCDNSSTIKLSKNPVLHGRSKHIDVR 557

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTEV 1232
            FHFLRDL +D  V+LV+C S +QVADIMTKPLKLD F++LR  LG+ EV
Sbjct: 558  FHFLRDLTRDGKVKLVHCGSKDQVADIMTKPLKLDEFVKLRELLGVCEV 606


>dbj|GAU13002.1| hypothetical protein TSUD_173010 [Trifolium subterraneum]
          Length = 1126

 Score =  548 bits (1413), Expect = 0.0
 Identities = 265/412 (64%), Positives = 334/412 (81%), Gaps = 1/412 (0%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKE-SKVYKLQKALYGLKQAPRAWYSRIET 182
            V+QLDVKSAFL+G+L E VY+DQP GY    KE  KVYKL+KALYGLKQAPRAWYS+IE+
Sbjct: 723  VYQLDVKSAFLHGDLVENVYVDQPPGY---NKEIGKVYKLRKALYGLKQAPRAWYSKIES 779

Query: 183  YFGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMT 362
            YF ++ F KCPHEH LFVK +  G +L++SLYVDDLIY GN+E M   FK+ MK +F MT
Sbjct: 780  YFNQEKFEKCPHEHTLFVKQDKKGNILIVSLYVDDLIYTGNNEAMFEEFKQSMKSQFSMT 839

Query: 363  DLGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGR 542
            DLGRM FFLGVEV Q + GI + QQKYARE+L RF M++ N V +PIVPGNKL +D NG+
Sbjct: 840  DLGRMRFFLGVEVKQLDSGIFVYQQKYARELLERFHMDQCNVVCSPIVPGNKLIRDENGK 899

Query: 543  AVDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLC 722
             VDVT Y+Q++G LMYL ATRPDL Y V L +RYMERP E H+ A KR+MRY+KGT++L 
Sbjct: 900  TVDVTNYRQIVGCLMYLLATRPDLTYSVCLIARYMERPTEIHLAAAKRVMRYLKGTLDLG 959

Query: 723  ILYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLST 902
            ILYR+ E+ +L+     G++DSDY GD+DDR+STSGYVF+L S+++SWSSKKQ +VTLST
Sbjct: 960  ILYRRNEEMKLQ-----GWSDSDYAGDLDDRKSTSGYVFMLGSSIISWSSKKQAIVTLST 1014

Query: 903  TEAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGI 1082
            TEAEF+A+A+CACQSIW+RR+L++LG KQ G   I+CDN+SSIKLSKNPV+HGR KHI +
Sbjct: 1015 TEAEFVAAASCACQSIWLRRVLEQLGQKQ-GCVKIHCDNSSSIKLSKNPVMHGRCKHIDV 1073

Query: 1083 RFHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTEVDN 1238
            R+HF RDL K+ VVEL+YC++ +QVAD+MTK LKL++F + RN LG+ +V N
Sbjct: 1074 RYHFFRDLTKENVVELIYCNTQDQVADVMTKALKLEAFCKFRNMLGINDVHN 1125


>gb|KZV47100.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Dorcoceras hygrometricum]
          Length = 553

 Score =  524 bits (1349), Expect = e-180
 Identities = 253/412 (61%), Positives = 321/412 (77%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            + QLDVKSAFL+G+L E+VYIDQP GY+  G E KVYKL+KALYGLKQAPRAWYSRIETY
Sbjct: 140  IFQLDVKSAFLHGDLEEQVYIDQPPGYIKIGNEHKVYKLKKALYGLKQAPRAWYSRIETY 199

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F K GF KCP+EH LF K E  GK+L++ LYVDDL + GND  M  +FKE M  EF+M+D
Sbjct: 200  FLKTGFKKCPYEHTLFTKFEDDGKMLIVCLYVDDLSFTGNDVSMFEDFKESMMVEFDMSD 259

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG+M++FLG+EV Q+  GI ISQ+KY +E+L RF ME+ N    P+  G KL++   G+ 
Sbjct: 260  LGKMHYFLGIEVVQSTGGIFISQKKYIQELLCRFHMEKCNAANTPVELGLKLTRYCEGKK 319

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            +D T++KQ++GSLMYLTATRPD+MY V L SRYME P E H++A KRI+RY++GT  L +
Sbjct: 320  IDSTVFKQIVGSLMYLTATRPDIMYSVSLISRYMENPTEVHLLAAKRILRYLQGTQKLSL 379

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
             Y+K EK      +L  F DSDY GD DDR+STSGYVF+L SA VSWSSKKQ +VTLSTT
Sbjct: 380  YYKKGEKA-----DLIAFCDSDYAGDQDDRKSTSGYVFLLGSAAVSWSSKKQSIVTLSTT 434

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAEF+A+ +CACQ+IW+++IL  L  K HG TVIYCDNNS+IKLSKNPVLHGRSKHI ++
Sbjct: 435  EAEFVAATSCACQAIWLKKILTDLKFKTHGPTVIYCDNNSAIKLSKNPVLHGRSKHIDVK 494

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTEVDNQ 1241
            +HFLRDL ++  ++L+YC S +QVAD+ TK LKL +F +LR+ LGM  ++N+
Sbjct: 495  YHFLRDLTRNGTLDLIYCRSEDQVADMFTKSLKLPAFQKLRDCLGMCTLENK 546


>emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]
          Length = 1088

 Score =  541 bits (1393), Expect = e-179
 Identities = 263/408 (64%), Positives = 328/408 (80%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            ++QLDVKSAFL+GE++EE +++QP GY  KGKESKVY+L+KALYGLKQAPRAWYSRIE+Y
Sbjct: 682  IYQLDVKSAFLHGEIHEEXFVEQPPGYEQKGKESKVYRLKKALYGLKQAPRAWYSRIESY 741

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F K+GF KCP+EH LF KT  GGK+L++ LYVD+LI+ GNDE M   FK+ M  EF+MTD
Sbjct: 742  FIKEGFNKCPYEHTLFTKTAEGGKILIVCLYVDELIFTGNDESMFKQFKKSMMVEFDMTD 801

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            L ++ +FLG+EV Q  +GI I+Q+KYA+EVL RF + + N V NP+VPG KL++D  G  
Sbjct: 802  LEKLRYFLGIEVMQKTDGIFINQRKYAQEVLERFNLYQCNPVHNPVVPGFKLTRDKEGVE 861

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            VD TLYKQM+GSLMYLTATRPDLM+ V L SRYME P E+H++A KRI+RYVKGT+   +
Sbjct: 862  VDGTLYKQMVGSLMYLTATRPDLMFSVSLISRYMEHPTESHLLAAKRILRYVKGTVEFGV 921

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
             Y+K        ++  G+TDSDY GD DDR+STSGYVF + S+ VSWSSKKQPVVTLSTT
Sbjct: 922  FYKKG-----GDDKFIGYTDSDYAGDHDDRKSTSGYVF-MNSSAVSWSSKKQPVVTLSTT 975

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAEFIA+A+ ACQ++W+RRIL+ L   Q   TVIYCDN S+IKLSKNPV+H RSKHI +R
Sbjct: 976  EAEFIAAASSACQAVWLRRILKSLNQVQTSPTVIYCDNVSAIKLSKNPVMHSRSKHIDVR 1035

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTE 1229
            FHFLRDL KDEVVEL+ CS+ EQ+ADIMTKPLKL++F +LR  +G+ E
Sbjct: 1036 FHFLRDLIKDEVVELLQCSTHEQIADIMTKPLKLEAFQKLRGLMGICE 1083


>gb|PRQ55184.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 516

 Score =  521 bits (1343), Expect = e-179
 Identities = 248/406 (61%), Positives = 318/406 (78%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            ++QLDVKSAFL+GEL E+VYIDQP GYV KG E KVY+L+KALYGLKQAPRAWYSRI+TY
Sbjct: 89   IYQLDVKSAFLHGELQEQVYIDQPLGYVKKGSEEKVYRLKKALYGLKQAPRAWYSRIDTY 148

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F   GF +CP+EH L++K+   GK L + LYVDDLIY GND++M   FK  M  EFEMTD
Sbjct: 149  FSNAGFQRCPYEHTLYIKSGIAGKFLAVCLYVDDLIYTGNDDDMFTKFKNSMMAEFEMTD 208

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            L R+++FLG+EV Q++ GI I+Q+KYA EVL +F M++ N V  P  PG KL+ D +G+ 
Sbjct: 209  LERLHYFLGIEVLQSSAGIFITQRKYALEVLEKFEMKDCNAVAIPAEPGLKLTMDPDGKK 268

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            V  T +KQ++GSLMYLTATRPD+M  V L SR+MERP E H+ A KRI+RYVKGT +  +
Sbjct: 269  VGSTFFKQIVGSLMYLTATRPDIMLSVSLISRFMERPTEQHLPAAKRILRYVKGTFDFGV 328

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
            LY++ E     K+EL GFTDSDY GD++DRRSTS YVF++ S  VSW+SKKQP+VTLSTT
Sbjct: 329  LYKRGE-----KSELVGFTDSDYAGDVNDRRSTSAYVFMMGSGPVSWASKKQPIVTLSTT 383

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAEF+A+ ACA Q+IW+R++L+ L  +Q G T IYCDN S+IKLSKN V HGRSKHI +R
Sbjct: 384  EAEFVAATACASQAIWLRKLLEELSYEQQGPTTIYCDNISAIKLSKNLVFHGRSKHIDVR 443

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGM 1223
            +HFLRDLCKD V+++V+C + +Q AD++TKPL+   F++LR  LG+
Sbjct: 444  YHFLRDLCKDGVIDMVHCRTEDQFADLLTKPLRSAVFVKLRGLLGV 489


>gb|PNX87200.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 396

 Score =  516 bits (1329), Expect = e-179
 Identities = 248/404 (61%), Positives = 323/404 (79%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            +HQLDV+SAFL+GEL E VY++QPKGY  KG   KVYKL+KALYGLKQAPRAWY++IE Y
Sbjct: 6    IHQLDVESAFLHGELTENVYVEQPKGYKKKG--DKVYKLKKALYGLKQAPRAWYNKIEAY 63

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            FG++ F KCPHEH LFVK + G ++L++SL VDDLIY GN+ EM  +FK  MK+ F MTD
Sbjct: 64   FGQENFEKCPHEHTLFVKQDEG-RILIVSLCVDDLIYTGNNTEMFEDFKYSMKRRFAMTD 122

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG+M +FLGVEV+Q   GI I+QQKYA+E+L RFGME  N V++PIVPG KLSKD NG+ 
Sbjct: 123  LGQMRYFLGVEVTQEKYGIFINQQKYAKEILSRFGMEMCNAVSSPIVPGCKLSKDENGKQ 182

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            +DVT YKQ++G LMYL ATRPDL + + L +RYM++P + H+ A KRI++Y+KGTM+L I
Sbjct: 183  IDVTKYKQIVGCLMYLLATRPDLAFSICLIARYMDKPTDMHLTAAKRILKYLKGTMSLGI 242

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
             Y++  + +L+     G+TDSDY GDIDDRRSTSGY+F L S+ +SWSSKKQP+VTLSTT
Sbjct: 243  FYKRGNELQLQ-----GWTDSDYAGDIDDRRSTSGYIFKLGSSAISWSSKKQPIVTLSTT 297

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAEF+A+A+C CQ+     +L +LG  Q  +TVI+CDN+SSIKLSKNP++HGR KHI +R
Sbjct: 298  EAEFVAAASCVCQA-----VLHQLGKAQGKSTVIFCDNSSSIKLSKNPIMHGRMKHIDVR 352

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKL 1217
            ++F+RDL KD ++EL +CS+ +Q+AD+MTKPLKL+SF + R  L
Sbjct: 353  YYFIRDLVKDGILELKHCSTCDQIADVMTKPLKLESFTKFREML 396


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  545 bits (1405), Expect = e-179
 Identities = 265/408 (64%), Positives = 323/408 (79%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            V QLDVKSAFL+GELNEEV++ QP GY  KG+E KVYKL+KALYGLKQAPRAWYS+IE Y
Sbjct: 940  VFQLDVKSAFLHGELNEEVFVKQPLGYEKKGEEDKVYKLKKALYGLKQAPRAWYSKIEAY 999

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F ++GF KC  EH LF KT+ G KLL++SLYVDDLIY GND  MC  FK  M  EF+M+D
Sbjct: 1000 FVREGFEKCFCEHTLFTKTKEGSKLLIVSLYVDDLIYTGNDRIMCEEFKNSMMVEFDMSD 1059

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LGRM +FLG+EV Q   GI + Q++YA EVL RFGM  SN+V NPIVPG KLSK+     
Sbjct: 1060 LGRMRYFLGIEVIQNPNGIFVCQRRYAHEVLVRFGMNNSNSVQNPIVPGTKLSKNNEETK 1119

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            VD TLY +M+GSLMYLTATRPDLMY V L SR+M  P E+H +A KRI+RY+KGT  L I
Sbjct: 1120 VDATLYMKMVGSLMYLTATRPDLMYGVSLISRFMSCPTESHWLAAKRILRYLKGTTELGI 1179

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
             Y+K +      + L  +TDSD+ GD+DDRRSTSG+VF+L SA VSWSSKKQP+VTLSTT
Sbjct: 1180 FYKKGD-----NSNLVAYTDSDFAGDLDDRRSTSGFVFLLGSAAVSWSSKKQPIVTLSTT 1234

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAE++A+A+CACQ +W++R+L++LG K+  +T+I CDN+S+IKLSKN V HGRSKHI I+
Sbjct: 1235 EAEYVAAASCACQCLWLKRVLEKLGHKEKRSTMIQCDNSSTIKLSKNSVFHGRSKHIDIK 1294

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTE 1229
            FHFLRDL KD VVEL YC+S EQVADIMTKP+KLD +++LR  +GM E
Sbjct: 1295 FHFLRDLVKDGVVELSYCNSQEQVADIMTKPIKLDQYLKLRKMMGMVE 1342


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  544 bits (1401), Expect = e-178
 Identities = 266/409 (65%), Positives = 330/409 (80%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            V+QLDVKSAFL+GEL E VY+DQP GY  K ++ KVYKL+KALYGLKQAPRAWYS+IE+Y
Sbjct: 916  VYQLDVKSAFLHGELVENVYVDQPLGYQ-KEEKGKVYKLKKALYGLKQAPRAWYSKIESY 974

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            FG++ F KCP+EH LFVK     KLL++SLYVDDLIY GND EM  NFK+ M+++F MTD
Sbjct: 975  FGQEKFEKCPYEHTLFVKRNKE-KLLIVSLYVDDLIYTGNDVEMFNNFKDSMQKKFAMTD 1033

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG+M FFLGVEV+Q   GI I+QQKY +E+L RFGME  N V +P+VPGNKL KD  G A
Sbjct: 1034 LGKMRFFLGVEVTQGEFGIFINQQKYVKEILSRFGMEACNMVCSPMVPGNKLMKDEEGSA 1093

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            VD T YKQM+G LMYL ATRPDL + V L +RYMERP E H+ A KRI+RY+KG+MNL I
Sbjct: 1094 VDSTKYKQMVGCLMYLLATRPDLAFSVCLIARYMERPTEMHLAAAKRILRYLKGSMNLGI 1153

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
            LY++    ELK     G+TDSDY GD++DR+STSGYVF + S+ +SWSSKKQP+VTLSTT
Sbjct: 1154 LYKRNTTQELK-----GWTDSDYAGDLNDRKSTSGYVFKVGSSAISWSSKKQPIVTLSTT 1208

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAEF+A+A+CACQ +W++RIL +LG  Q  +T+IYCDN SSIKLSKNPV+HGR KHI +R
Sbjct: 1209 EAEFVAAASCACQGVWLKRILHQLGQTQDKSTIIYCDNTSSIKLSKNPVMHGRCKHIDVR 1268

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTEV 1232
            ++FLRDL KD+V+EL +C++ EQ+ADIMTKPLKLDSF + R  LG+ ++
Sbjct: 1269 YYFLRDLVKDDVLELKHCNTEEQIADIMTKPLKLDSFYKFREMLGVCDI 1317


>gb|AFP55578.1| copia-type polyprotein [Rosa rugosa]
          Length = 1187

 Score =  536 bits (1380), Expect = e-176
 Identities = 259/406 (63%), Positives = 318/406 (78%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            + QLDVKSAFL+GELNE+VYI+QP+G+  KG+E KVYKL+KALYGLKQAPRAWYSRIE Y
Sbjct: 780  IFQLDVKSAFLHGELNEDVYIEQPQGFEQKGEEEKVYKLKKALYGLKQAPRAWYSRIEGY 839

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F K+GF +C +EH LFVK E  GK+L++SLYVDD I+ GND  M   FK  M  EFEMTD
Sbjct: 840  FVKEGFERCSYEHTLFVKIEGEGKMLIVSLYVDDQIFTGNDMSMIEKFKSSMMHEFEMTD 899

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG M +FLGVE+ Q+ EGIH+ Q KYAREV+ RFGM +SN V NPIVPG+KLS +  G  
Sbjct: 900  LGEMKYFLGVEIRQSAEGIHLCQSKYAREVIERFGMGKSNPVRNPIVPGSKLSMEAGGAV 959

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            VD TL+KQ++GSLMYLTATRPDL+Y V L SR+M  P EAH+ A KR++RY+KGT  L +
Sbjct: 960  VDGTLFKQLVGSLMYLTATRPDLIYVVCLISRFMAHPREAHLSAAKRVLRYLKGTTELGV 1019

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
             YR+        +EL G+TDSDY GD+D +RSTSG+VF+L    VSWSS+KQ VVTLSTT
Sbjct: 1020 FYRRG-----VDDELVGYTDSDYAGDMDGKRSTSGFVFMLSGGAVSWSSRKQHVVTLSTT 1074

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAE++A+A CACQS+WMRR+L +LG  Q     ++CDN+S+IKLSKNPV HGRSKHI +R
Sbjct: 1075 EAEYVAAAGCACQSVWMRRVLNKLGYSQCKCVTMFCDNSSTIKLSKNPVFHGRSKHIDVR 1134

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGM 1223
            FHFLRDL KD VVEL +  S EQ+ADI+TKPLK++ F +LR  LG+
Sbjct: 1135 FHFLRDLTKDGVVELKFYGSKEQIADILTKPLKMERFEKLRELLGV 1180


>gb|KYP44586.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 783

 Score =  523 bits (1347), Expect = e-176
 Identities = 249/408 (61%), Positives = 319/408 (78%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            ++QLD+KSAFL+GE+NE+VY++QP GYV +G+E +VYKL+KALYGLKQAPRAWYS++E++
Sbjct: 370  IYQLDIKSAFLHGEINEDVYLEQPPGYVCQGREHQVYKLKKALYGLKQAPRAWYSKLESH 429

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
                GF KCPHEH LF+K E G ++L++  YVDDLIY G+DE M   FK  M  EF MTD
Sbjct: 430  LVTNGFLKCPHEHTLFLKKE-GSEILIVCFYVDDLIYTGSDELMFQQFKTIMMNEFAMTD 488

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG+M +FLG+EV Q+  GI+I Q+KY +++L RF M + N+V NPI PG +L K+  G  
Sbjct: 489  LGKMRYFLGIEVLQSCTGIYIGQKKYIKDMLNRFDMSDCNSVKNPIAPGTRLLKEDKGTE 548

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            VD T+YKQ++GSLMYLTATRPD+ + V L SR+ME P E+H +A KRI+RY++GT NL I
Sbjct: 549  VDSTIYKQLVGSLMYLTATRPDIAHSVSLISRFMEHPKESHFIAAKRILRYLQGTQNLGI 608

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
             Y+          ELF +TDSDY GD++DR+STSGY F+L   V+SW SKKQPVV+LSTT
Sbjct: 609  FYKAGIN-----EELFAYTDSDYAGDLEDRKSTSGYAFLLAGGVISWVSKKQPVVSLSTT 663

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAEFIA+A CACQ +W+RRIL+ L   Q GATV++CDN S+IKLSKNPVLHGRSKHI +R
Sbjct: 664  EAEFIAAALCACQCVWLRRILEHLDHYQVGATVMFCDNVSTIKLSKNPVLHGRSKHIDVR 723

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTE 1229
            FHFLR+LC D V+EL +CS+  Q+ADIMTKPLK++ F RLR+ LGM E
Sbjct: 724  FHFLRNLCNDGVIELNFCSTKNQLADIMTKPLKVEDFQRLRSALGMLE 771


>gb|PNY15642.1| copia-type polyprotein [Trifolium pratense]
          Length = 822

 Score =  524 bits (1349), Expect = e-176
 Identities = 257/408 (62%), Positives = 323/408 (79%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            + QLDVKSAFL+GEL E VY+ QP G+ V G++++VYKL+KALYGLKQAPRAWYS+I++Y
Sbjct: 414  IFQLDVKSAFLHGELLENVYVQQPLGFQV-GEKNQVYKLKKALYGLKQAPRAWYSKIQSY 472

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F  + F KC HEH LFVK    GK+L++SLYVDDLIY GND++M   FK  MK++F MTD
Sbjct: 473  FDTEKFMKCSHEHTLFVKYGEKGKILIVSLYVDDLIYTGNDKQMMEEFKGSMKKKFAMTD 532

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG+M +FLGVEV+QT +GI I+QQKYA ++L RFGM++ N V  PIVPG KL KD NGR 
Sbjct: 533  LGKMKYFLGVEVNQTQQGIFINQQKYASDILTRFGMQDCNKVCTPIVPGCKLVKDENGRP 592

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
             D T YKQMIG LMYL ATRPDL Y V L +RYM++P E H++AVKRIMRY+KGTM+  I
Sbjct: 593  ADATSYKQMIGCLMYLLATRPDLTYSVCLAARYMDKPTEMHVIAVKRIMRYLKGTMSYGI 652

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
            LY+    T+ +   L G+TDSDY GD DDR+STSGYVF + +  +SWSSKKQP+VTLSTT
Sbjct: 653  LYK---STDEENVTLVGWTDSDYAGDYDDRKSTSGYVFSIGTGAISWSSKKQPIVTLSTT 709

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAEFIA+A+ ACQ IW+R +L++L  +Q   T IYCDN+SSIKLSKNPV+HGRSKHI +R
Sbjct: 710  EAEFIAAASSACQGIWLRNVLKQLRQEQVTCTTIYCDNSSSIKLSKNPVMHGRSKHIDVR 769

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTE 1229
            +HFLRDL  D V+EL +C + EQ+ADIMTK LK+D+F +LR +LG+ +
Sbjct: 770  YHFLRDLNNDGVIELKHCRTNEQLADIMTKALKVDTFCKLREELGICD 817


>gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]
          Length = 1328

 Score =  538 bits (1387), Expect = e-176
 Identities = 264/411 (64%), Positives = 329/411 (80%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            V+QLDVKSAFL+GEL+E+VY+DQP GY  KGK+S+VYKL+KALYGL+QAPRAWYS+IE Y
Sbjct: 921  VYQLDVKSAFLHGELSEDVYVDQPLGYQ-KGKKSQVYKLKKALYGLRQAPRAWYSKIEAY 979

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F  + F KC HEH LFVK +   K+L++SLYVDDLIY GND+E+  +FK  MK+ F MTD
Sbjct: 980  FSNEKFEKCSHEHTLFVK-QVEEKILIVSLYVDDLIYTGNDDELIRDFKSSMKRNFAMTD 1038

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG+M++FLGVEV+Q + GI I+QQKYA E+L RF M+  N V +PIVPG KL KD NG+ 
Sbjct: 1039 LGKMSYFLGVEVTQNDRGIFINQQKYAAEILNRFNMDSCNFVCSPIVPGTKLFKDENGKC 1098

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            VD T +KQM+G LMYL ATRPDL Y V L +RYMERP E H+ A KRI+RY+KGT++  +
Sbjct: 1099 VDSTQFKQMVGCLMYLIATRPDLCYSVCLIARYMERPTEIHLAAAKRILRYLKGTISYGV 1158

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
            LY K         +L G+TDSDY GD DDR+STSGYVF L S  +SWSSKKQP+VTLSTT
Sbjct: 1159 LYDKGSLNM----KLEGWTDSDYAGDSDDRKSTSGYVFKLGSGAISWSSKKQPIVTLSTT 1214

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAE++A+A+ ACQ +W+RRILQ+LG KQ   + +YCDN+SSIKLSKNP+LHGR KHI +R
Sbjct: 1215 EAEYVAAASGACQGVWLRRILQQLGQKQDKPSTMYCDNSSSIKLSKNPILHGRCKHIDVR 1274

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTEVDN 1238
            +HFLRDL K  VVELV+CS+ EQ+ADIMTKPLKL+SF++LR+KLG+ +  N
Sbjct: 1275 YHFLRDLTKQGVVELVHCSTDEQIADIMTKPLKLESFVKLRSKLGVCDAFN 1325


>gb|KYP69898.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 522

 Score =  511 bits (1317), Expect = e-175
 Identities = 249/408 (61%), Positives = 308/408 (75%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            V QLDVKS FL+GEL EE+Y+ QP G+V KG+E KV KL+K LYGLKQAPRAWY++IE Y
Sbjct: 115  VFQLDVKSVFLHGELKEEIYVQQPNGFVKKGEEEKVNKLKKELYGLKQAPRAWYNKIEAY 174

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F + GF +C  EH LF K+  GGK+L+ISLYVDDLIY GND  MC  F+  M  EF+M+D
Sbjct: 175  FVRNGFDRCLCEHTLFTKSNEGGKILIISLYVDDLIYTGNDGSMCDEFRRAMMTEFDMSD 234

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG+M +F GVEV Q + GI I Q+KYA+EVL RFGME  N V NPIVPG +LSK+  G  
Sbjct: 235  LGKMRYFHGVEVMQNSSGIFICQRKYAQEVLLRFGMENCNEVKNPIVPGTRLSKNDAGTK 294

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            VD TL+KQ++GSLMYLT T+P LMY V L SR+M  P E+H  A KRI+RY+KGT  L I
Sbjct: 295  VDATLFKQVVGSLMYLTTTQPYLMYGVSLISRFMSSPIESHWFAAKRILRYLKGTTELGI 354

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
             Y+K E       ++  ++++D+ GDIDDRRSTSG+VF+  S  +SWSSKKQPVVTLSTT
Sbjct: 355  YYKKGENA-----KIVAYSNNDFAGDIDDRRSTSGFVFLFGSGAISWSSKKQPVVTLSTT 409

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAE+I +A+CACQ IW++R+L++L  ++   T+I CDNNS I+LSKNP+ HGRSKHI I+
Sbjct: 410  EAEYITTASCACQCIWIQRVLEKLSLEEQKNTLILCDNNSMIQLSKNPMFHGRSKHIDIK 469

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTE 1229
            FHFLRDL K   +EL YCSS  QV DIMTKPLKL+ F +LR  LGM E
Sbjct: 470  FHFLRDLVKKGTIELSYCSSQTQVVDIMTKPLKLEQFSKLRRMLGMLE 517


>gb|PNY07765.1| putative copia-type polyprotein [Trifolium pratense]
          Length = 1321

 Score =  536 bits (1380), Expect = e-175
 Identities = 260/410 (63%), Positives = 320/410 (78%)
 Frame = +3

Query: 6    VHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIETY 185
            V QLDVKSAFL+GEL E+V+++QP GYV K  +  VYKL++ALYGLKQAPRAWYSRI+ Y
Sbjct: 914  VFQLDVKSAFLHGELVEQVFVEQPPGYVKKESKHMVYKLKRALYGLKQAPRAWYSRIDAY 973

Query: 186  FGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMTD 365
            F + GF KCP+EH L++KT   G  L++ LYVDDLI+ GNDE +   FK+ M +EFEMTD
Sbjct: 974  FSQTGFHKCPYEHTLYIKTGEKGNFLIVCLYVDDLIFTGNDECLFKEFKQSMMKEFEMTD 1033

Query: 366  LGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGRA 545
            LG M +FLG+EV Q+  GI I Q+KYA+EVL RF M++ N V  PIVPG KL++D  G  
Sbjct: 1034 LGMMKYFLGIEVVQSAAGIFICQKKYAQEVLERFKMDDCNPVQIPIVPGTKLTRDVEGTK 1093

Query: 546  VDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLCI 725
            +D T YKQM+GSLMY+TATRPDL Y V L SRYME P E H   VK+I+RY+KGT+N  +
Sbjct: 1094 IDNTYYKQMVGSLMYITATRPDLTYAVSLISRYMESPTELHHQVVKKILRYLKGTVNYGL 1153

Query: 726  LYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLSTT 905
             Y+K E      NEL GF+DSDY GD+DDR+STSGYVF+L  A VSWSSKKQPVVTLSTT
Sbjct: 1154 FYKKSE-----INELVGFSDSDYAGDLDDRKSTSGYVFLLSGAAVSWSSKKQPVVTLSTT 1208

Query: 906  EAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGIR 1085
            EAEFIA+A+C CQ IW+RRIL+ +   Q G  +++CDN+S+IKLSKNPVLHGRSKHI +R
Sbjct: 1209 EAEFIAAASCVCQGIWLRRILEEVKHTQQGPLMLFCDNSSTIKLSKNPVLHGRSKHIDVR 1268

Query: 1086 FHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTEVD 1235
            FHFLRDL K+EVV+L YC S EQ+ADI TKPLK+DSF++LR  LGM  ++
Sbjct: 1269 FHFLRDLTKEEVVKLCYCRSDEQIADIFTKPLKVDSFMKLRALLGMCSIE 1318


>dbj|GAU31929.1| hypothetical protein TSUD_271130, partial [Trifolium subterraneum]
          Length = 541

 Score =  511 bits (1316), Expect = e-175
 Identities = 247/409 (60%), Positives = 314/409 (76%)
 Frame = +3

Query: 3    KVHQLDVKSAFLYGELNEEVYIDQPKGYVVKGKESKVYKLQKALYGLKQAPRAWYSRIET 182
            KV QLDVKSAFL+GEL E++Y++QP GY  KG +  VYKL+KALYGLKQAP AWYS+IE 
Sbjct: 128  KVFQLDVKSAFLHGELTEDIYVEQPPGYQ-KGNKDMVYKLKKALYGLKQAPMAWYSKIEA 186

Query: 183  YFGKQGFTKCPHEHALFVKTEAGGKLLVISLYVDDLIYAGNDEEMCANFKECMKQEFEMT 362
            YF  + F KC HEH LFVK  +  K+L++SLYVDDLI  GND  M  +FKE MK+ F MT
Sbjct: 187  YFTVEQFKKCSHEHTLFVKYGSNNKILIVSLYVDDLICTGNDLSMIHDFKESMKKNFAMT 246

Query: 363  DLGRMNFFLGVEVSQTNEGIHISQQKYAREVLRRFGMEESNTVTNPIVPGNKLSKDGNGR 542
            DLG+M +FLGVEV+Q+ +GI I Q KYA E+L+RFGME  N V +PIVPG KLSKD NG 
Sbjct: 247  DLGKMKYFLGVEVTQSEDGIFIHQHKYALEILKRFGMENCNKVCSPIVPGCKLSKDENGS 306

Query: 543  AVDVTLYKQMIGSLMYLTATRPDLMYFVRLTSRYMERPAEAHMMAVKRIMRYVKGTMNLC 722
            A D   +KQM+G LMYL ATRPDL Y + L +R+MERP   H+  VKRIMRY+KGT+   
Sbjct: 307  ATDAKRFKQMVGCLMYLLATRPDLAYSICLVARFMERPTVMHIAVVKRIMRYLKGTLTDG 366

Query: 723  ILYRKQEKTELKKNELFGFTDSDYGGDIDDRRSTSGYVFVLISAVVSWSSKKQPVVTLST 902
            I+Y+    T  K+ EL G++DSDY GD++DR++TSGYVF+L +  +SWSSKKQP++TLST
Sbjct: 367  IMYK---HTNDKRLELIGWSDSDYAGDLNDRKNTSGYVFMLGTGAISWSSKKQPILTLST 423

Query: 903  TEAEFIASAACACQSIWMRRILQRLGTKQHGATVIYCDNNSSIKLSKNPVLHGRSKHIGI 1082
            TEAE++A+A CACQ IW++ +L  L    +   VIYCDN+SSIKLSKNP++HGR KHI +
Sbjct: 424  TEAEYVAAAVCACQCIWLKNVLNHLQITHNNGIVIYCDNSSSIKLSKNPIMHGRCKHIDV 483

Query: 1083 RFHFLRDLCKDEVVELVYCSSAEQVADIMTKPLKLDSFIRLRNKLGMTE 1229
            RFHF R+L KD +VEL +C S EQ+AD+MTKPLKL++F++L+  LGM +
Sbjct: 484  RFHFPRNLTKDGIVELKHCKSQEQLADLMTKPLKLEAFLKLKEGLGMQQ 532