BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00038789
         (414 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX72990.1| ribonuclease H, partial [Trifolium pratense]            77   3e-25
dbj|GAU10806.1| hypothetical protein TSUD_425900, partial [Trifo...    76   5e-24
gb|PNX94788.1| ribonuclease H [Trifolium pratense]                     79   9e-24
gb|PNY03121.1| ribonuclease H, partial [Trifolium pratense]            70   3e-23
gb|PNX81608.1| ribonuclease H [Trifolium pratense]                     70   3e-23
dbj|GAU31911.1| hypothetical protein TSUD_270960 [Trifolium subt...    67   3e-22
gb|PNY00640.1| phosphoglycerate mutase family protein [Trifolium...    85   3e-22
gb|PNX66369.1| ribonuclease H, partial [Trifolium pratense]            84   4e-22
gb|PNX84687.1| ribonuclease H [Trifolium pratense]                     71   4e-22
gb|PNY06182.1| ribonuclease H [Trifolium pratense]                     78   5e-22
dbj|GAU50328.1| hypothetical protein TSUD_290640 [Trifolium subt...    79   8e-22
dbj|GAU46467.1| hypothetical protein TSUD_402340 [Trifolium subt...    68   3e-21
dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subt...    64   8e-21
dbj|GAU12636.1| hypothetical protein TSUD_121270 [Trifolium subt...    75   9e-21
dbj|GAU43243.1| hypothetical protein TSUD_241340 [Trifolium subt...    65   1e-20
gb|PNX92362.1| ribonuclease H [Trifolium pratense] >gi|133525119...    75   2e-20
gb|PNY12420.1| ribonuclease H [Trifolium pratense]                     65   2e-20
dbj|GAU43502.1| hypothetical protein TSUD_398950 [Trifolium subt...    67   3e-20
dbj|GAU19541.1| hypothetical protein TSUD_303540 [Trifolium subt...    67   4e-20
gb|PNX68268.1| ribonuclease H, partial [Trifolium pratense]            71   4e-20

>gb|PNX72990.1| ribonuclease H, partial [Trifolium pratense]
          Length = 892

 Score = 77.4 bits (189), Expect(2) = 3e-25
 Identities = 33/59 (55%), Positives = 41/59 (69%)
 Frame = +2

Query: 233  IAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAELWG 409
            I W+PP   WI +NTDGA K  +  AGCGG  RDS+G+W GGF K + + SA+ AELWG
Sbjct: 834  IGWKPPVEGWIKINTDGACKG-MATAGCGGIIRDSKGVWLGGFAKHIGICSAFTAELWG 891



 Score = 65.5 bits (158), Expect(2) = 3e-25
 Identities = 25/65 (38%), Positives = 36/65 (55%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W  +NL  + V   ++ W   WA  C+ LW W NK+ HED F+RP NP  +VLQ+   Y 
Sbjct: 756 WFHINLIGDLVKVADIKWTEFWANACYCLWTWHNKEKHEDNFLRPINPVMVVLQRCREYN 815

Query: 183 DGKLL 197
              ++
Sbjct: 816 SAAIV 820


>dbj|GAU10806.1| hypothetical protein TSUD_425900, partial [Trifolium subterraneum]
          Length = 176

 Score = 76.3 bits (186), Expect(2) = 5e-24
 Identities = 27/60 (45%), Positives = 40/60 (66%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W+  NL N+     ++ WC  WA+ CH LW WRNK+ HE+ F+RPYNP  +++Q+A  Y+
Sbjct: 7   WMCFNLNNSITWRSSVEWCVYWAIACHSLWSWRNKEEHEESFIRPYNPAQVIMQKAVEYD 66



 Score = 62.4 bits (150), Expect(2) = 5e-24
 Identities = 28/59 (47%), Positives = 38/59 (64%)
 Frame = +2

Query: 233 IAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAELWG 409
           I W PP   ++ LNTDGA + +  +AGCGG  R   G W GGF + + + SA++AELWG
Sbjct: 85  IRWIPPKASFVKLNTDGAYRKNQ-IAGCGGVIRGCHGEWLGGFARCVGLCSAFVAELWG 142


>gb|PNX94788.1| ribonuclease H [Trifolium pratense]
          Length = 509

 Score = 78.6 bits (192), Expect(2) = 9e-24
 Identities = 35/68 (51%), Positives = 43/68 (63%)
 Frame = +2

Query: 206 HFQYQAQINIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNS 385
           H + Q Q++I W  PP  W +LN+DGA K S   AGCGG  R+  G W  GFTK L   +
Sbjct: 330 HGRVQQQVDITWLAPPPGWFALNSDGAAKLSESKAGCGGVLRNENGNWIEGFTKALGDTT 389

Query: 386 AYLAELWG 409
           AY+AELWG
Sbjct: 390 AYMAELWG 397



 Score = 59.3 bits (142), Expect(2) = 9e-24
 Identities = 24/67 (35%), Positives = 37/67 (55%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W+ LNL N    +   +W  +WA  C+ LW+WRNK +H+D FV P  P  +V+     Y+
Sbjct: 260 WIHLNLNNKFGQNYGNDWKAIWATTCYLLWLWRNKSIHDDEFVIPERPWQVVMDYVAAYK 319

Query: 183 DGKLLQD 203
              L ++
Sbjct: 320 HSMLTEE 326


>gb|PNY03121.1| ribonuclease H, partial [Trifolium pratense]
          Length = 952

 Score = 70.5 bits (171), Expect(2) = 3e-23
 Identities = 32/59 (54%), Positives = 41/59 (69%)
 Frame = +2

Query: 233 IAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAELWG 409
           I WRPP  +++ LNTDGA K +   AGCGG  R S+G W GGF K + + SA++AELWG
Sbjct: 804 IGWRPPKPNFVKLNTDGAYKENKA-AGCGGVIRGSEGEWMGGFAKGVGLCSAFVAELWG 861



 Score = 65.9 bits (159), Expect(2) = 3e-23
 Identities = 26/59 (44%), Positives = 36/59 (61%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYY 179
           W+  NL N+    G  +W + WA  CH LW WRNK+LH++ ++RP NP   VL+Q   Y
Sbjct: 726 WVCYNLQNSITWSGKGSWRDYWAQACHCLWFWRNKELHDEDYMRPINPAHQVLKQRWEY 784


>gb|PNX81608.1| ribonuclease H [Trifolium pratense]
          Length = 630

 Score = 70.5 bits (171), Expect(2) = 3e-23
 Identities = 31/64 (48%), Positives = 43/64 (67%)
 Frame = +2

Query: 218 QAQINIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLA 397
           + +I + W+ P   W+SLNTDGA +     AGCGG  R+S+G W GGF++ L   +AY+A
Sbjct: 456 KVEITVTWQCPEDGWLSLNTDGASRGHTS-AGCGGLLRNSEGQWLGGFSRNLGRCNAYIA 514

Query: 398 ELWG 409
           ELWG
Sbjct: 515 ELWG 518



 Score = 65.9 bits (159), Expect(2) = 3e-23
 Identities = 24/59 (40%), Positives = 36/59 (61%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYY 179
           W+ LN+      D NL+W +VWA  CH+LW+WRN++ H D  +RP  P  ++L+    Y
Sbjct: 383 WIILNMKKQLGRDNNLSWASVWATSCHFLWLWRNRETHGDSRLRPLQPWKLILKWVMQY 441


>dbj|GAU31911.1| hypothetical protein TSUD_270960 [Trifolium subterraneum]
          Length = 853

 Score = 66.6 bits (161), Expect(2) = 3e-22
 Identities = 29/59 (49%), Positives = 41/59 (69%)
 Frame = +2

Query: 233 IAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAELWG 409
           I W PP  +++ LNTDGA K  + +AGCGG  R S+G W GGF K + + +A++AE+WG
Sbjct: 699 IRWSPPKANFVKLNTDGACKEHI-IAGCGGIVRGSEGEWIGGFAKCVGMCNAFIAEMWG 756



 Score = 66.2 bits (160), Expect(2) = 3e-22
 Identities = 26/48 (54%), Positives = 32/48 (66%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNP 146
           W+  NL N+     N NWC+ WA+GC  LW WRN++LHED FVRP  P
Sbjct: 621 WMNFNLNNSIKWINNGNWCSFWALGCFCLWKWRNQELHEDSFVRPSMP 668


>gb|PNY00640.1| phosphoglycerate mutase family protein [Trifolium pratense]
          Length = 404

 Score = 84.7 bits (208), Expect(2) = 3e-22
 Identities = 39/69 (56%), Positives = 46/69 (66%)
 Frame = +2

Query: 203 LHFQYQAQINIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVN 382
           LH   +  + I W+PP   W+ LNTDGA K    VAGCGG  RDS G+WRGGF K L + 
Sbjct: 92  LHNVEKNVVMINWKPPSEGWVKLNTDGAYKEG-SVAGCGGVIRDSNGVWRGGFAKNLGIC 150

Query: 383 SAYLAELWG 409
           SAY+AELWG
Sbjct: 151 SAYIAELWG 159



 Score = 48.1 bits (113), Expect(2) = 3e-22
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W+  NL ++      + W + WA  CH LW WRNK++ ++ F RP +    V      Y 
Sbjct: 24  WIDFNLLSSRKWREEIAWKDFWATACHCLWPWRNKEVRDEQFQRPQHVVTAVTDWVKQYN 83

Query: 183 DGKLLQ 200
               LQ
Sbjct: 84  QAMGLQ 89


>gb|PNX66369.1| ribonuclease H, partial [Trifolium pratense]
          Length = 252

 Score = 84.3 bits (207), Expect(2) = 4e-22
 Identities = 39/69 (56%), Positives = 46/69 (66%)
 Frame = +2

Query: 203 LHFQYQAQINIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVN 382
           LH   +  + I W+PP   W+ LNTDGA K    VAGCGG  RDS G+WRGGF K L + 
Sbjct: 73  LHNVEKNVVMINWKPPSEGWVKLNTDGAYKEG-SVAGCGGVIRDSNGVWRGGFAKNLGIC 131

Query: 383 SAYLAELWG 409
           SAY+AELWG
Sbjct: 132 SAYVAELWG 140



 Score = 48.1 bits (113), Expect(2) = 4e-22
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W+  NL ++      + W + WA  CH LW WRNK++ ++ F RP +    V      Y 
Sbjct: 5   WIDFNLLSSRKWREEIAWKDFWATACHCLWPWRNKEVRDEQFQRPQHVVTAVTDWVKQYN 64

Query: 183 DGKLLQ 200
               LQ
Sbjct: 65  QAMGLQ 70


>gb|PNX84687.1| ribonuclease H [Trifolium pratense]
          Length = 245

 Score = 71.2 bits (173), Expect(2) = 4e-22
 Identities = 28/64 (43%), Positives = 39/64 (60%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W+  NL NNS   G  +W + WA+ CH LW+WRNK+ H+  FVRP+ P   +LQ +  Y 
Sbjct: 52  WIGFNLNNNSQWRGRXDWXDFWALSCHCLWMWRNKECHDADFVRPHRPVRHILQLSEDYR 111

Query: 183 DGKL 194
           +  L
Sbjct: 112 NAVL 115



 Score = 61.2 bits (147), Expect(2) = 4e-22
 Identities = 31/59 (52%), Positives = 36/59 (61%)
 Frame = +2

Query: 233 IAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAELWG 409
           I W PP   +I L TDGA K    VAGCGG  R  QG W G F K + + SA++AELWG
Sbjct: 130 IGWSPPKPLFIKLKTDGAYKDRQ-VAGCGGVLRGCQGEWLGSFAKWVGLCSAFIAELWG 187


>gb|PNY06182.1| ribonuclease H [Trifolium pratense]
          Length = 686

 Score = 78.2 bits (191), Expect(2) = 5e-22
 Identities = 37/62 (59%), Positives = 43/62 (69%)
 Frame = +2

Query: 224 QINIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAEL 403
           +I+I WR P  D I LNTDGA+     VAGCGG FRDS G W+GGF K +   SAY+AEL
Sbjct: 516 RIDIRWRAPQRDCICLNTDGALLGG--VAGCGGAFRDSNGAWKGGFAKNIGSASAYVAEL 573

Query: 404 WG 409
           WG
Sbjct: 574 WG 575



 Score = 53.9 bits (128), Expect(2) = 5e-22
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W+ +N+         + W  VWA  C+Y+W WRNK   +  FVRP +P+  ++     Y 
Sbjct: 441 WVVINMEVTVKTIEGVEWRVVWATACYYIWRWRNKFKFDSNFVRPLHPHKEIMNYVDCYN 500

Query: 183 DGKLLQDFTSS 215
             K + D  S+
Sbjct: 501 KAKPVVDVVSA 511


>dbj|GAU50328.1| hypothetical protein TSUD_290640 [Trifolium subterraneum]
          Length = 474

 Score = 78.6 bits (192), Expect(2) = 8e-22
 Identities = 36/69 (52%), Positives = 47/69 (68%)
 Frame = +2

Query: 203 LHFQYQAQINIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVN 382
           L  + Q +++IAW+ P   W+ LNTDGA K  +  AGCGG  R+S G W GGF++ L + 
Sbjct: 350 LSTRQQMEVDIAWQQPEAGWVVLNTDGASKMDVA-AGCGGLLRNSHGQWIGGFSRHLGIC 408

Query: 383 SAYLAELWG 409
           SAYLAELWG
Sbjct: 409 SAYLAELWG 417



 Score = 52.8 bits (125), Expect(2) = 8e-22
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVL 161
           W+ +NL  +   + ++ W  VWA  CH LW WRN++ H++  +RP +P   +L
Sbjct: 282 WIHMNLQQDLGRNMHMEWYGVWATSCHSLWTWRNRETHDETRLRPIHPWRYIL 334


>dbj|GAU46467.1| hypothetical protein TSUD_402340 [Trifolium subterraneum]
          Length = 299

 Score = 67.8 bits (164), Expect(2) = 3e-21
 Identities = 32/61 (52%), Positives = 39/61 (63%)
 Frame = +2

Query: 227 INIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAELW 406
           + I W PP   W+ LNTDGA K    VAGCGG  R++ G W GGF K +   SA++AELW
Sbjct: 128 VMIGWEPPSQGWVKLNTDGARKNER-VAGCGGIIRNNIGDWIGGFAKHVGSCSAFVAELW 186

Query: 407 G 409
           G
Sbjct: 187 G 187



 Score = 61.6 bits (148), Expect(2) = 3e-21
 Identities = 21/60 (35%), Positives = 36/60 (60%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W ++NL    V   ++NW   WA  C++LW WRN++ H++ F RP  P  +++Q+   Y+
Sbjct: 52  WFSINLDGELVGINDINWPEFWATVCYFLWNWRNREYHDNSFTRPVQPVQVIMQRCREYK 111


>dbj|GAU13938.1| hypothetical protein TSUD_262650 [Trifolium subterraneum]
          Length = 875

 Score = 64.3 bits (155), Expect(2) = 8e-21
 Identities = 30/61 (49%), Positives = 40/61 (65%)
 Frame = +2

Query: 227 INIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAELW 406
           ++I W+PP   ++ LNTDGA K +   AGCGG  R + G W GGF K +   SA++AELW
Sbjct: 704 VDIGWKPPSGSFVKLNTDGARKDNN-KAGCGGIIRGNHGEWLGGFAKGVGECSAFIAELW 762

Query: 407 G 409
           G
Sbjct: 763 G 763



 Score = 63.5 bits (153), Expect(2) = 8e-21
 Identities = 25/67 (37%), Positives = 36/67 (53%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W++ NL          +WC+ WA  CH LW+WRNK+ H++ FVRP  P   V ++   Y+
Sbjct: 628 WISRNLMKGRTRRRGSDWCDFWATTCHSLWMWRNKEAHDEEFVRPMQPVNYVQKRVEEYQ 687

Query: 183 DGKLLQD 203
             K   D
Sbjct: 688 HAKQASD 694


>dbj|GAU12636.1| hypothetical protein TSUD_121270 [Trifolium subterraneum]
          Length = 240

 Score = 75.1 bits (183), Expect(2) = 9e-21
 Identities = 32/64 (50%), Positives = 40/64 (62%)
 Frame = +2

Query: 218 QAQINIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLA 397
           +  + I W+PP   W+ LNTDGA K     AGC G  RD+ G+WRGGF K L + S Y+ 
Sbjct: 127 EVPVMINWKPPSEGWVKLNTDGAYKEG-SAAGCRGVIRDNNGVWRGGFAKNLGICSVYVV 185

Query: 398 ELWG 409
           ELWG
Sbjct: 186 ELWG 189



 Score = 52.8 bits (125), Expect(2) = 9e-21
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W+  NL ++      + W + W + CH LW WRNK+ HE+ F RP +    V  +  +Y 
Sbjct: 52  WINFNLHSSKKWREEIAWKDYWDVACHCLWSWRNKEEHEEQFHRPQHVVIDVTDRVKHYN 111

Query: 183 DGKLLQ 200
              +LQ
Sbjct: 112 QAMMLQ 117


>dbj|GAU43243.1| hypothetical protein TSUD_241340 [Trifolium subterraneum]
          Length = 371

 Score = 64.7 bits (156), Expect(2) = 1e-20
 Identities = 27/61 (44%), Positives = 40/61 (65%)
 Frame = +2

Query: 227 INIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAELW 406
           + + W+ PP+ W+ LNTDG+ +     +GCGG  R S+G W GGF K +  ++ Y+AELW
Sbjct: 300 VMVGWKYPPSGWVKLNTDGSCRKD-GRSGCGGVIRGSEGEWIGGFAKFVGRSNVYVAELW 358

Query: 407 G 409
           G
Sbjct: 359 G 359



 Score = 62.4 bits (150), Expect(2) = 1e-20
 Identities = 24/61 (39%), Positives = 34/61 (55%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W+  N++N       + W  +W + CH LW WRNK+ HE+ F RP N    V+ Q  YY+
Sbjct: 224 WINYNMSNYMGKYNGVEWKIMWVVACHQLWFWRNKEKHEESFSRPSNAVLHVMNQVKYYQ 283

Query: 183 D 185
           D
Sbjct: 284 D 284


>gb|PNX92362.1| ribonuclease H [Trifolium pratense]
 gb|PNY10145.1| ribonuclease H [Trifolium pratense]
          Length = 339

 Score = 74.7 bits (182), Expect(2) = 2e-20
 Identities = 31/64 (48%), Positives = 42/64 (65%)
 Frame = +2

Query: 218 QAQINIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLA 397
           + Q+ +AW+ PP  W +LN DGA K++L  AGCGG   D++G W  GF K L   SAY+ 
Sbjct: 193 KTQVQVAWKGPPNGWCALNIDGAAKSNLQRAGCGGVLCDAEGRWIEGFAKYLGYTSAYMT 252

Query: 398 ELWG 409
           +LWG
Sbjct: 253 KLWG 256



 Score = 52.0 bits (123), Expect(2) = 2e-20
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +3

Query: 12  LNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYEDGK 191
           LNL+     +    W ++WA  C+ LW WRNK + ++ F+ P  P  +VL+    Y D  
Sbjct: 123 LNLSCQLGRNSEYGWDSIWATTCYLLWYWRNKRIQDENFISPIKPLEVVLEYVKTYGDSI 182

Query: 192 LLQDFTSS 215
            L+    S
Sbjct: 183 ALEQKAQS 190


>gb|PNY12420.1| ribonuclease H [Trifolium pratense]
          Length = 1341

 Score = 64.7 bits (156), Expect(2) = 2e-20
 Identities = 29/59 (49%), Positives = 39/59 (66%)
 Frame = +2

Query: 233  IAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAELWG 409
            I W PP  +++ LNTDGA K +   AGCGG  R  +G W GG+ K + + SA++AELWG
Sbjct: 1172 IGWSPPKMNFVKLNTDGAYKENRA-AGCGGVIRGCEGEWLGGYAKGVGLCSAFVAELWG 1229



 Score = 61.6 bits (148), Expect(2) = 2e-20
 Identities = 23/48 (47%), Positives = 28/48 (58%)
 Frame = +3

Query: 3    WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNP 146
            W+  NL N+   D    W   WA  CH LW WRNKD+H++ FVRP  P
Sbjct: 1094 WVCFNLQNSVTWDRRGQWREYWAQACHCLWFWRNKDIHDEDFVRPTRP 1141


>dbj|GAU43502.1| hypothetical protein TSUD_398950 [Trifolium subterraneum]
          Length = 1962

 Score = 67.4 bits (163), Expect(2) = 3e-20
 Identities = 32/60 (53%), Positives = 39/60 (65%)
 Frame = +2

Query: 230  NIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAYLAELWG 409
            +I W+PP   W+ LNTDGA K     AGCGG  R +QG W GGF K +   SA++AELWG
Sbjct: 1792 HIRWKPPEGVWVKLNTDGACKEDNR-AGCGGVVRGNQGEWLGGFAKGVGKCSAFVAELWG 1850



 Score = 58.5 bits (140), Expect(2) = 3e-20
 Identities = 22/47 (46%), Positives = 28/47 (59%)
 Frame = +3

Query: 3    WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYN 143
            WL +N+     V     WC+ WA+ C   W WRNK+LHED F+RP N
Sbjct: 1715 WLHINVNYAGKVAIGQRWCDFWALACSCFWTWRNKELHEDNFMRPSN 1761


>dbj|GAU19541.1| hypothetical protein TSUD_303540 [Trifolium subterraneum]
          Length = 642

 Score = 67.4 bits (163), Expect(2) = 4e-20
 Identities = 33/72 (45%), Positives = 41/72 (56%)
 Frame = +2

Query: 194 SSGLHFQYQAQINIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRL 373
           S  L    + ++ I W  P  DWI LNTDGA +       CGG  R+S G W GGF++ L
Sbjct: 464 SIALPVHQKVEVPIGWNKPAGDWIKLNTDGASRPR-----CGGLLRNSNGQWLGGFSRHL 518

Query: 374 FVNSAYLAELWG 409
              +AYLAELWG
Sbjct: 519 GRCNAYLAELWG 530



 Score = 58.2 bits (139), Expect(2) = 4e-20
 Identities = 23/64 (35%), Positives = 34/64 (53%)
 Frame = +3

Query: 3   WLALNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYE 182
           W+ +NL      + N+ W  VWA+GCH LW+WRN++ H D  VRP      +L     Y+
Sbjct: 399 WICMNLHKELGKETNVRWSCVWAVGCHVLWLWRNRECHGDMRVRPTQLWQTILYMVQQYK 458

Query: 183 DGKL 194
              +
Sbjct: 459 QADI 462


>gb|PNX68268.1| ribonuclease H, partial [Trifolium pratense]
          Length = 194

 Score = 71.2 bits (173), Expect(2) = 4e-20
 Identities = 33/66 (50%), Positives = 44/66 (66%)
 Frame = +2

Query: 212 QYQAQINIAWRPPPTDWISLNTDGAVKASLCVAGCGGTFRDSQGLWRGGFTKRLFVNSAY 391
           +++  +NIAW+ P   WI LNTDGA K  +  +GCGG  R+S G W  GF++ L   +AY
Sbjct: 123 EHKTLVNIAWQRPEDGWILLNTDGASKNGV-TSGCGGILRNSHGQWISGFSRNLGRCNAY 181

Query: 392 LAELWG 409
           LAELWG
Sbjct: 182 LAELWG 187



 Score = 54.3 bits (129), Expect(2) = 4e-20
 Identities = 25/67 (37%), Positives = 37/67 (55%)
 Frame = +3

Query: 12  LNLTNNSVVDGNLNWCNVWAMGCHYLWIWRNKDLHEDGFVRPYNPNAIVLQQAHYYEDGK 191
           +NL  N     N +W +VWA GC++LW+WRN++ H D  +RP  P   +L     Y+   
Sbjct: 55  INLHQNLGRSMNRSWPSVWATGCYFLWMWRNREAHGDTRLRPAQPWNFILNWVDQYKRAD 114

Query: 192 LLQDFTS 212
            + D TS
Sbjct: 115 -VNDITS 120