BLASTX nr result
ID: Astragalus22_contig00037409
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus22_contig00037409
(348 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense] 75 7e-19
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen... 78 1e-18
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen... 72 2e-18
gb|PNX85109.1| retrovirus-related Pol polyprotein from transposo... 79 2e-18
emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera] 76 4e-18
emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera] 77 5e-18
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo... 75 5e-18
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen... 79 1e-17
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen... 79 1e-17
emb|CAN79845.1| hypothetical protein VITISV_027568 [Vitis vinifera] 77 2e-17
gb|KYP40819.1| Retrovirus-related Pol polyprotein from transposo... 69 5e-17
gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposo... 74 7e-17
gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinen... 68 2e-16
gb|KYP42102.1| Retrovirus-related Pol polyprotein from transposo... 74 5e-16
dbj|GAU27929.1| hypothetical protein TSUD_160240 [Trifolium subt... 72 7e-16
emb|CAN68842.1| hypothetical protein VITISV_023226 [Vitis vinifera] 70 7e-16
gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposo... 69 7e-16
gb|PNX90684.1| retrovirus-related Pol polyprotein from transposo... 73 2e-15
gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense] 74 7e-15
gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposo... 65 1e-14
>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
Length = 1326
Score = 74.7 bits (182), Expect(2) = 7e-19
Identities = 34/69 (49%), Positives = 42/69 (60%)
Frame = +1
Query: 142 FSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRDSIP 321
F T + D S +WH RYGH +MV+GLPQ S S+ +C +C GKQHRD IP
Sbjct: 419 FHTKAQDLSHLWHRRYGHLSYKGLRTLLYKNMVRGLPQFSISSVICTNCINGKQHRDPIP 478
Query: 322 KKSKWRAAE 348
KKS WRA +
Sbjct: 479 KKSNWRATQ 487
Score = 46.6 bits (109), Expect(2) = 7e-19
Identities = 21/48 (43%), Positives = 32/48 (66%)
Frame = +2
Query: 2 AVLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTSNEAKCF 145
A+L GMCKI+H +KGLI+++ M T RMF L ++ V+ + +CF
Sbjct: 372 AILIKGGMCKIFHPEKGLIIQTNMSTNRMFTLRSQAQVSPQAQSDQCF 419
>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1302
Score = 77.8 bits (190), Expect(2) = 1e-18
Identities = 35/71 (49%), Positives = 43/71 (60%)
Frame = +1
Query: 133 SKMFSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRD 312
S F T S D + +WH RYGH +MVKGLP +K+C+DC GKQHR+
Sbjct: 417 SACFQTVSEDNTHLWHCRYGHLSFKGLKTLQYRNMVKGLPDFKMPSKLCKDCMVGKQHRE 476
Query: 313 SIPKKSKWRAA 345
SIPKKS WRA+
Sbjct: 477 SIPKKSMWRAS 487
Score = 43.1 bits (100), Expect(2) = 1e-18
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +2
Query: 2 AVLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTSNEAKCF 145
A+L GMC+IYH +KGLI+++ M RMF +LA N + CF
Sbjct: 377 AILIQNGMCQIYHPRKGLIMQTKMSANRMFVILA----NMLPQASACF 420
>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 719
Score = 72.4 bits (176), Expect(2) = 2e-18
Identities = 34/72 (47%), Positives = 41/72 (56%)
Frame = +1
Query: 133 SKMFSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRD 312
S +S D S +WH RY H MVKGLPQ+ S +VC DC GKQ RD
Sbjct: 430 STCMQASSDDLSHLWHCRYSHLNYKGLKTLHYRKMVKGLPQIKASARVCHDCLVGKQSRD 489
Query: 313 SIPKKSKWRAAE 348
SIPK S+WRA++
Sbjct: 490 SIPKSSQWRASQ 501
Score = 47.8 bits (112), Expect(2) = 2e-18
Identities = 22/42 (52%), Positives = 29/42 (69%)
Frame = +2
Query: 2 AVLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTS 127
A+L G+CKIYH KKGLI+++ M RMF LLA +V + S
Sbjct: 389 AILIQHGVCKIYHSKKGLIMQTPMTANRMFVLLANVVVTDFS 430
>gb|PNX85109.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 488
Score = 79.3 bits (194), Expect(2) = 2e-18
Identities = 37/69 (53%), Positives = 43/69 (62%)
Frame = +1
Query: 142 FSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRDSIP 321
F T + D S +WH RYGH +MV+GLPQLS ST C DC GKQHRDSIP
Sbjct: 420 FHTKAQDLSHLWHRRYGHLSYKGLKTLLYKNMVRGLPQLSISTVTCTDCINGKQHRDSIP 479
Query: 322 KKSKWRAAE 348
+KS WRA +
Sbjct: 480 RKSNWRATQ 488
Score = 40.4 bits (93), Expect(2) = 2e-18
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +2
Query: 2 AVLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTSNEAKCF 145
A+L G CKI+H +KGL++++ M RMF LL + ++ + +CF
Sbjct: 373 AILIKGGSCKIFHPEKGLMIQTNMSANRMFILLPQTQASSQAQFDQCF 420
>emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]
Length = 2408
Score = 75.9 bits (185), Expect(2) = 4e-18
Identities = 33/69 (47%), Positives = 42/69 (60%)
Frame = +1
Query: 142 FSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRDSIP 321
F T D + +WH RYGH MV+GLPQL +K+C DC GKQHRD+IP
Sbjct: 360 FQTILEDNTHLWHCRYGHLSFKGLRTLQYKQMVRGLPQLKAPSKICTDCMVGKQHRDAIP 419
Query: 322 KKSKWRAAE 348
K+S WRA++
Sbjct: 420 KRSLWRASQ 428
Score = 43.1 bits (100), Expect(2) = 4e-18
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +2
Query: 2 AVLFDEGMCKIYHRKKGLILESIMETYRMFKLLA 103
A+L G+C++YH KKGLI+++ M T RMF L A
Sbjct: 317 AILIQHGVCRVYHPKKGLIMQTAMSTKRMFILSA 350
>emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]
Length = 3048
Score = 76.6 bits (187), Expect(2) = 5e-18
Identities = 36/72 (50%), Positives = 42/72 (58%)
Frame = +1
Query: 133 SKMFSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRD 312
S F+T + D +WH RYGH MV GLPQ +K+C+DC GKQHR
Sbjct: 440 STCFNTVTEDILQLWHCRYGHLSFQGLKTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRS 499
Query: 313 SIPKKSKWRAAE 348
SIPKKS WRAAE
Sbjct: 500 SIPKKSNWRAAE 511
Score = 42.0 bits (97), Expect(2) = 5e-18
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Frame = +2
Query: 5 VLFDEGMCKIYHRKKGLILESIMETYRMFKL--LAEPIVNNTSN 130
+LF G CK++H +KGLI+++ M + RMF L L++PI + N
Sbjct: 401 ILFQHGKCKVFHSQKGLIMDTKMSSNRMFMLYALSQPISSTCFN 444
>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 551
Score = 74.7 bits (182), Expect(2) = 5e-18
Identities = 36/70 (51%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +1
Query: 142 FSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQ-LSNSTKVCEDCWKGKQHRDSI 318
F ++ D S +WH RY H MV+GLP LS + KVCEDC KGKQHRD I
Sbjct: 114 FHISTQDLSSLWHRRYAHLSHKGLRILQSKGMVRGLPSSLSTTEKVCEDCMKGKQHRDPI 173
Query: 319 PKKSKWRAAE 348
PKKS+WRA +
Sbjct: 174 PKKSQWRAKQ 183
Score = 43.9 bits (102), Expect(2) = 5e-18
Identities = 21/41 (51%), Positives = 25/41 (60%)
Frame = +2
Query: 5 VLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTS 127
V+F G CK+YH KGLILE+ M T RMF L A+ S
Sbjct: 72 VMFQSGTCKLYHPDKGLILETNMTTNRMFILFAQSATKKDS 112
>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1316
Score = 79.0 bits (193), Expect(2) = 1e-17
Identities = 36/71 (50%), Positives = 43/71 (60%)
Frame = +1
Query: 133 SKMFSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRD 312
S F T S D + +WH RYGH MVKGLP S+K+C+DC GKQHR+
Sbjct: 419 SACFQTVSEDNTHLWHCRYGHLSFKGLRSLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRE 478
Query: 313 SIPKKSKWRAA 345
SIPKKS WRA+
Sbjct: 479 SIPKKSMWRAS 489
Score = 38.5 bits (88), Expect(2) = 1e-17
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +2
Query: 5 VLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTSNEAKCF 145
+L GMC+IYH +KGLI+++ M RMF + A N + CF
Sbjct: 380 ILIRNGMCQIYHPRKGLIMQTKMSANRMFVIRA----NMLPQASACF 422
>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1044
Score = 79.0 bits (193), Expect(2) = 1e-17
Identities = 36/71 (50%), Positives = 43/71 (60%)
Frame = +1
Query: 133 SKMFSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRD 312
S F T S D + +WH RYGH MVKGLP S+K+C+DC GKQHR+
Sbjct: 138 SACFQTVSEDNTHLWHCRYGHLSFKGLRTLQYRKMVKGLPDFKMSSKLCKDCMVGKQHRE 197
Query: 313 SIPKKSKWRAA 345
SIPKKS WRA+
Sbjct: 198 SIPKKSMWRAS 208
Score = 38.5 bits (88), Expect(2) = 1e-17
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +2
Query: 5 VLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTSNEAKCF 145
+L GMC+IYH +KGLI+++ M RMF + A N + CF
Sbjct: 99 ILIRNGMCQIYHPRKGLIMQTKMSANRMFVIRA----NMLPQASACF 141
>emb|CAN79845.1| hypothetical protein VITISV_027568 [Vitis vinifera]
Length = 1226
Score = 77.4 bits (189), Expect(2) = 2e-17
Identities = 36/72 (50%), Positives = 42/72 (58%)
Frame = +1
Query: 133 SKMFSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRD 312
S F+T + D +WH RYGH MV GLPQ +K+C+DC GKQHR
Sbjct: 358 STCFNTVTADILQLWHCRYGHLSFQGLQTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRS 417
Query: 313 SIPKKSKWRAAE 348
SIPKKS WRAAE
Sbjct: 418 SIPKKSNWRAAE 429
Score = 39.3 bits (90), Expect(2) = 2e-17
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +2
Query: 5 VLFDEGMCKIYHRKKGLILESIMETYRMFKL--LAEPIVNNTSN 130
+LF G CK++H +K LI+++ M + RMF L L++PI + N
Sbjct: 319 ILFQHGKCKVFHSQKXLIMDTKMSSNRMFMLHALSQPISSTCFN 362
>gb|KYP40819.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 582
Score = 69.3 bits (168), Expect(2) = 5e-17
Identities = 32/65 (49%), Positives = 39/65 (60%)
Frame = +1
Query: 148 TASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRDSIPKK 327
T++ D + MWH RYGH MVKGLP+L KVC +C GKQHRD+I K+
Sbjct: 416 TSNVDSTEMWHKRYGHLSYGGLKLLNQKAMVKGLPELKEMDKVCPECAVGKQHRDAISKQ 475
Query: 328 SKWRA 342
S WRA
Sbjct: 476 STWRA 480
Score = 45.8 bits (107), Expect(2) = 5e-17
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +2
Query: 5 VLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTSNEAKC 142
++FD+ C++YH++KGL++ S M RMF + A+P++ EA C
Sbjct: 372 IIFDDDKCRVYHKEKGLLMTSYMANNRMFPIKAKPVI----TEAAC 413
>gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 73.9 bits (180), Expect(2) = 7e-17
Identities = 35/70 (50%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +1
Query: 142 FSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQ-LSNSTKVCEDCWKGKQHRDSI 318
F ++ D S +WH+RY H MV+GLP LS + VCEDC KGKQHRD I
Sbjct: 422 FHISTQDLSSLWHHRYAHLSHKGLRILQSKGMVRGLPSSLSTTENVCEDCTKGKQHRDPI 481
Query: 319 PKKSKWRAAE 348
PKKS+WRA +
Sbjct: 482 PKKSQWRAKQ 491
Score = 40.8 bits (94), Expect(2) = 7e-17
Identities = 20/41 (48%), Positives = 24/41 (58%)
Frame = +2
Query: 5 VLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTS 127
V+F G CK+YH KGLILE+ M T MF L A+ S
Sbjct: 380 VMFQSGTCKLYHPDKGLILETNMTTNIMFILFAQSATKKDS 420
>gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1363
Score = 67.8 bits (164), Expect(2) = 2e-16
Identities = 32/69 (46%), Positives = 39/69 (56%)
Frame = +1
Query: 142 FSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRDSIP 321
F+T + D + +WH R GH MV GLPQL VC DC KGKQHR+ IP
Sbjct: 483 FNTTTQDLTHLWHCRLGHISNTGLQTLQRKKMVHGLPQLPALDVVCVDCLKGKQHREPIP 542
Query: 322 KKSKWRAAE 348
K+S WRA +
Sbjct: 543 KRSTWRATQ 551
Score = 45.4 bits (106), Expect(2) = 2e-16
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 2/50 (4%)
Frame = +2
Query: 2 AVLFDEGMCKIYHRKKGLILESIMETYRMFKLLA--EPIVNNTSNEAKCF 145
A+L G CKIYH +KGLI++S M RMF L+A EP +++ SN+ CF
Sbjct: 435 AILIHYGKCKIYHPQKGLIIQSEMTANRMFVLVARIEPTLSD-SNQEICF 483
>gb|KYP42102.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 538
Score = 73.6 bits (179), Expect(2) = 5e-16
Identities = 33/72 (45%), Positives = 44/72 (61%)
Frame = +1
Query: 133 SKMFSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRD 312
S F A+ D + +WH R+GH +MVKGLP L + +K+C+DC GKQHRD
Sbjct: 417 STCFKIATEDVAHLWHCRFGHLSFKGLQTLQQKEMVKGLPLLKSPSKLCKDCIAGKQHRD 476
Query: 313 SIPKKSKWRAAE 348
S P KS WRA++
Sbjct: 477 SFPIKSSWRASQ 488
Score = 38.1 bits (87), Expect(2) = 5e-16
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +2
Query: 2 AVLFDEGMCKIYHRKKGLILESIMETYRMFKL 97
++LF +G CKIYH KGLI+++ M RMF L
Sbjct: 377 SILFQQGHCKIYHPDKGLIMKANMFANRMFIL 408
>dbj|GAU27929.1| hypothetical protein TSUD_160240 [Trifolium subterraneum]
Length = 1197
Score = 72.0 bits (175), Expect(2) = 7e-16
Identities = 31/65 (47%), Positives = 40/65 (61%)
Frame = +1
Query: 148 TASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRDSIPKK 327
T + D++ +WH+RYGH DMVKGLP L + C DC GKQHR+ IPK+
Sbjct: 344 TTNEDKTQLWHHRYGHLSVKGLKLLNKKDMVKGLPALRELNEKCTDCLMGKQHREVIPKQ 403
Query: 328 SKWRA 342
+KWRA
Sbjct: 404 AKWRA 408
Score = 39.3 bits (90), Expect(2) = 7e-16
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 5 VLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIV---NNTSNEAK 139
++F + CK YH +KGLI + M T RM+ ++A IV T+NE K
Sbjct: 302 IIFKDNTCKAYHDEKGLIFSTQMSTNRMYMIVAPVIVLMCLQTTNEDK 349
>emb|CAN68842.1| hypothetical protein VITISV_023226 [Vitis vinifera]
Length = 1146
Score = 70.1 bits (170), Expect(2) = 7e-16
Identities = 32/74 (43%), Positives = 42/74 (56%)
Frame = +1
Query: 127 K*SKMFSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQH 306
K S F T D + +WH RYGH M +GLPQL +K+C DC KQH
Sbjct: 653 KASTCFQTILEDNTHLWHCRYGHLSFKGLRTLQYKQMGRGLPQLKAPSKICTDCMLRKQH 712
Query: 307 RDSIPKKSKWRAAE 348
+D+IPK+S WRA++
Sbjct: 713 KDAIPKRSLWRASQ 726
Score = 41.2 bits (95), Expect(2) = 7e-16
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = +2
Query: 2 AVLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTSNEAKCF 145
A+L G+C++YH KKG I+++ M +MF LLA+ + S + CF
Sbjct: 615 AILIQHGVCRVYHPKKGFIMQTTMYANKMFILLAKIL----SKASTCF 658
>gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 508
Score = 69.3 bits (168), Expect(2) = 7e-16
Identities = 32/65 (49%), Positives = 39/65 (60%)
Frame = +1
Query: 148 TASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRDSIPKK 327
T++ D + MWH RYGH MVKGLP+L KVC +C GKQHRD+I K+
Sbjct: 87 TSNVDSTEMWHKRYGHLSYGGLKLLNQKAMVKGLPELKEMDKVCPECAVGKQHRDAISKQ 146
Query: 328 SKWRA 342
S WRA
Sbjct: 147 STWRA 151
Score = 42.0 bits (97), Expect(2) = 7e-16
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +2
Query: 5 VLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTSNEAKC 142
++FD+ C++YH++KGL++ S M RMF + A+ ++ EA C
Sbjct: 43 IIFDDDKCRVYHKEKGLLMTSYMANNRMFPIKAKLVI----TEAAC 84
>gb|PNX90684.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 372
Score = 72.8 bits (177), Expect(2) = 2e-15
Identities = 34/70 (48%), Positives = 40/70 (57%)
Frame = +1
Query: 133 SKMFSTASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRD 312
S F TAS DE+ +WH RYGH MV GLP++ +K+C DC GKQ R
Sbjct: 279 SSCFKTASEDETHLWHCRYGHLNYNGLKTLQSKKMVTGLPEIRTPSKLCNDCVMGKQQRK 338
Query: 313 SIPKKSKWRA 342
IPKKS WRA
Sbjct: 339 PIPKKSLWRA 348
Score = 37.0 bits (84), Expect(2) = 2e-15
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 2 AVLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPIVNNTSNEAKCF 145
+VL G C+ YH K+GL L++ M RMF A P+ S + CF
Sbjct: 239 SVLIQNGECRCYHSKEGLFLQTKMSANRMFVFHATPM----SQFSSCF 282
>gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]
Length = 1209
Score = 74.3 bits (181), Expect(2) = 7e-15
Identities = 34/67 (50%), Positives = 38/67 (56%)
Frame = +1
Query: 148 TASGDESLMWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRDSIPKK 327
TA E +WH+RYGH DMV GLP L S ++C DC KQHRDSIPK
Sbjct: 398 TAHDSEGSLWHHRYGHLSFKGLHTLAKKDMVNGLPLLQESQELCSDCVISKQHRDSIPKT 457
Query: 328 SKWRAAE 348
S WRA E
Sbjct: 458 SSWRATE 464
Score = 33.5 bits (75), Expect(2) = 7e-15
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 5 VLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPI 112
++F + CKI+H ++GLI+ + M RM+ LL I
Sbjct: 356 IVFSKDTCKIFHEERGLIVSTPMTVNRMYILLCPVI 391
>gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 560
Score = 64.7 bits (156), Expect(2) = 1e-14
Identities = 29/59 (49%), Positives = 33/59 (55%)
Frame = +1
Query: 172 MWHYRYGHXXXXXXXXXXXXDMVKGLPQLSNSTKVCEDCWKGKQHRDSIPKKSKWRAAE 348
+WH RYGH MV GLP L + T VC C GKQHRD IPKK+ WRA +
Sbjct: 401 LWHCRYGHLSHKGLRTLQYKKMVHGLPPLKSPTDVCTVCMIGKQHRDPIPKKANWRATQ 459
Score = 42.7 bits (99), Expect(2) = 1e-14
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +2
Query: 2 AVLFDEGMCKIYHRKKGLILESIMETYRMFKLLAEPI 112
++L G CKIYH +KGL++++ M T RMF L A P+
Sbjct: 348 SILIQNGSCKIYHPEKGLVIQTEMTTNRMFVLTAVPM 384