BLASTX nr result
ID: Astragalus22_contig00037080
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus22_contig00037080
(406 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP66984.1| Retrovirus-related Pol polyprotein from transposo... 108 3e-25
gb|ABE88097.1| Reverse transcriptase (RNA-dependent DNA polymera... 98 6e-22
ref|XP_020233066.1| uncharacterized protein LOC109813314 [Cajanu... 97 1e-21
gb|KYP55231.1| hypothetical protein KK1_001438 [Cajanus cajan] 97 2e-21
gb|PNX62837.1| retrovirus-related Pol polyprotein from transposo... 96 3e-21
gb|PNX92076.1| retrovirus-related Pol polyprotein from transposo... 98 5e-21
gb|KYP68633.1| Retrovirus-related Pol polyprotein from transposo... 98 6e-21
gb|PNX84630.1| retrovirus-related Pol polyprotein from transposo... 97 7e-21
dbj|GAU43894.1| hypothetical protein TSUD_399420 [Trifolium subt... 97 8e-21
gb|PNX71343.1| retrovirus-related Pol polyprotein from transposo... 95 4e-20
gb|PNX92373.1| retrovirus-related Pol polyprotein from transposo... 95 5e-20
dbj|GAU46782.1| hypothetical protein TSUD_351810 [Trifolium subt... 94 1e-19
gb|PNX86354.1| retrovirus-related Pol polyprotein from transposo... 93 2e-19
gb|PNX87108.1| retrovirus-related Pol polyprotein from transposo... 93 2e-19
gb|PNX77692.1| retrovirus-related Pol polyprotein from transposo... 93 2e-19
gb|PNX94461.1| retrovirus-related Pol polyprotein from transposo... 93 2e-19
gb|PNY13965.1| peptide transporter PTR2 [Trifolium pratense] 93 2e-19
gb|PNX65078.1| retrovirus-related Pol polyprotein from transposo... 89 4e-19
gb|PNY05485.1| retrovirus-related Pol polyprotein from transposo... 91 4e-19
gb|PNX75793.1| retrovirus-related Pol polyprotein from transposo... 92 6e-19
>gb|KYP66984.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 420
Score = 108 bits (270), Expect = 3e-25
Identities = 68/139 (48%), Positives = 86/139 (61%), Gaps = 5/139 (3%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
LL+SLYGL +ASR+WF+KL L+S G TQ ADHTL IKS+ S+ VLL
Sbjct: 150 LLKSLYGLKQASRKWFEKLESFLISCGF----TQAHADHTLFIKSSYTSYTVLLVYVDDI 205
Query: 185 LPC*V*CTQGCSP*C-----FSN*KSWQLKFFLGLEMAHSFKGIFLCQCKYCLELLAGSG 349
+ + C F QLK+FLGLE+AHS +GI LCQ KYCLELL+ SG
Sbjct: 206 ILVGTSLSDFDRIKCLLHDAFQIKDLGQLKYFLGLEVAHSQRGISLCQRKYCLELLSDSG 265
Query: 350 LTG*KPVTTRLDPAIQLHQ 406
LTG KP++T LDP +L++
Sbjct: 266 LTGCKPISTPLDPTSRLYK 284
>gb|ABE88097.1| Reverse transcriptase (RNA-dependent DNA polymerase) [Medicago
truncatula]
Length = 293
Score = 97.8 bits (242), Expect = 6e-22
Identities = 62/138 (44%), Positives = 82/138 (59%), Gaps = 5/138 (3%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
L +SLYGL +AS +W++KLT++L+S G Q +D +L IK T SF +LL
Sbjct: 126 LNKSLYGLQQASMKWYEKLTNILISTGY----KQAASDASLFIKHTHSSFTILLVYVDDV 181
Query: 185 LPC*V*CTQ-----GCSP*CFSN*KSWQLKFFLGLEMAHSFKGIFLCQCKYCLELLAGSG 349
+ ++ G F QLK+FLGLE+AHS GI LCQ KYCL+LL SG
Sbjct: 182 ILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLEDSG 241
Query: 350 LTG*KPVTTRLDPAIQLH 403
LTG KP+ T DP+I+LH
Sbjct: 242 LTGSKPMNTPSDPSIKLH 259
>ref|XP_020233066.1| uncharacterized protein LOC109813314 [Cajanus cajan]
gb|KYP49507.1| hypothetical protein KK1_028702 [Cajanus cajan]
Length = 295
Score = 97.1 bits (240), Expect = 1e-21
Identities = 60/143 (41%), Positives = 85/143 (59%), Gaps = 11/143 (7%)
Frame = +2
Query: 11 RSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H*LP 190
+SLYGL + SR+W++KL+ LLLS G V Q ADH+L +K+T +F L+
Sbjct: 20 KSLYGLKQESRKWYEKLSLLLLSSGYV----QAHADHSLFVKATSSAFTALVVYVDD--- 72
Query: 191 C*V*CTQGCSP*CFSN*KS-----------WQLKFFLGLEMAHSFKGIFLCQCKYCLELL 337
+ T C+ +N K+ QLK+FLG+E+AHS KGI +CQ KYCLEL+
Sbjct: 73 --IVFTGNCASE-ITNLKTILHSHFHIKDLGQLKYFLGIEVAHSSKGISICQRKYCLELI 129
Query: 338 AGSGLTG*KPVTTRLDPAIQLHQ 406
SGL G K +T +D +++LHQ
Sbjct: 130 TDSGLIGCKTTSTPMDDSLRLHQ 152
>gb|KYP55231.1| hypothetical protein KK1_001438 [Cajanus cajan]
Length = 311
Score = 97.1 bits (240), Expect = 2e-21
Identities = 62/144 (43%), Positives = 84/144 (58%), Gaps = 10/144 (6%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
L +SLYGL +ASR+W++KL+ LLLS G V Q ADH+L IK T+++F L+
Sbjct: 17 LKKSLYGLKQASRKWYEKLSLLLLSCGYV----QAHADHSLFIKVTEYAFTALIVYVDD- 71
Query: 185 LPC*V*CTQGCSP*C----------FSN*KSWQLKFFLGLEMAHSFKGIFLCQCKYCLEL 334
+ T C F QLK+FLG+E+AHS KGI +CQ KYCL+L
Sbjct: 72 ----IVLTGNCVSEITIIKITLHSHFHIKDLGQLKYFLGIEVAHSNKGISICQRKYCLDL 127
Query: 335 LAGSGLTG*KPVTTRLDPAIQLHQ 406
+ GL G KP +T +D +I+LHQ
Sbjct: 128 IKDFGLMGCKPSSTPMDNSIRLHQ 151
>gb|PNX62837.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 297
Score = 96.3 bits (238), Expect = 3e-21
Identities = 63/145 (43%), Positives = 85/145 (58%), Gaps = 11/145 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
LL+SLYGL +ASR+W++KLT +LL++G V Q +DH+L S SF LL
Sbjct: 94 LLKSLYGLKQASRKWYEKLTGVLLAQGYV----QSSSDHSLFTLSKDSSFTALLVYVDDI 149
Query: 185 LPC*V*CTQGCSP*CFSN*KSW-----------QLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G S F++ K QLK+FLG+E+AHS +GI LCQ KY L+
Sbjct: 150 I------LAGDSLDEFTHIKQLLDDLFKIKDLGQLKYFLGIEVAHSNQGITLCQRKYFLD 203
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLHQ 406
LL +GL G KP T LDP+++LHQ
Sbjct: 204 LLQDTGLLGAKPAKTPLDPSVKLHQ 228
>gb|PNX92076.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 720
Score = 97.8 bits (242), Expect = 5e-21
Identities = 65/144 (45%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
L++SLYGL +ASRQW+ KLT LLLS G Q +DH+L K F +LL
Sbjct: 324 LVKSLYGLKQASRQWYAKLTSLLLSHGY----KQAHSDHSLFTKHDASHFTLLLVYVDDV 379
Query: 185 LPC*V*CTQGCSP*CFSN*KSW-----------QLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G FS K+ QLK+FLGLE+AHS KGI LCQ KYCL+
Sbjct: 380 I------LAGNHMAEFSYVKNLLHNAFKIKDLGQLKYFLGLEVAHSAKGISLCQRKYCLD 433
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLH 403
LL+ SGL G KPV+T D +++LH
Sbjct: 434 LLSDSGLLGAKPVSTPSDASLKLH 457
>gb|KYP68633.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1108
Score = 97.8 bits (242), Expect = 6e-21
Identities = 63/145 (43%), Positives = 85/145 (58%), Gaps = 11/145 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
L +SL+GLN+ASR+W+++LT LLLS G +Q +D +L +K T +F LL
Sbjct: 940 LTKSLHGLNQASRRWYERLTTLLLSCGF----SQAHSDSSLFVKKTSLTFTALLVYVDDI 995
Query: 185 LPC*V*CTQGCSP*CFSN*KS-----------WQLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G S F++ K QLK+FLGL+++HS GI +CQ KYCL+
Sbjct: 996 I------LAGDSLAEFNHIKGILNDSFKIKDLGQLKYFLGLQVSHSQLGISVCQYKYCLD 1049
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLHQ 406
LL SGL G KPV T LDP +QLHQ
Sbjct: 1050 LLKDSGLLGSKPVRTPLDPLVQLHQ 1074
>gb|PNX84630.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 543
Score = 97.4 bits (241), Expect = 7e-21
Identities = 62/145 (42%), Positives = 84/145 (57%), Gaps = 11/145 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
LL+SLYGL +ASR+W++KLT +LL++G + Q +DH+L SF LL
Sbjct: 380 LLKSLYGLKQASRKWYEKLTSVLLAQGYM----QSSSDHSLFTLHKDSSFTALLVYVDDI 435
Query: 185 LPC*V*CTQGCSP*CFSN*KSW-----------QLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G S F + K QLK+FLG+E+AHS +GI LCQ KYCL+
Sbjct: 436 I------LAGDSHDEFLHIKKLLDDLFRIKDLGQLKYFLGIEVAHSSQGITLCQRKYCLD 489
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLHQ 406
LL +GL G KP T LDP+++LHQ
Sbjct: 490 LLQDTGLLGAKPAKTPLDPSVKLHQ 514
>dbj|GAU43894.1| hypothetical protein TSUD_399420 [Trifolium subterraneum]
Length = 1098
Score = 97.4 bits (241), Expect = 8e-21
Identities = 62/145 (42%), Positives = 84/145 (57%), Gaps = 11/145 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
LL+SLYGL +ASR+W++KLT +LLS+G Q +DH+L + SF VLL
Sbjct: 828 LLKSLYGLKQASRKWYEKLTGVLLSQGY----KQSSSDHSLFTLHRESSFTVLLVYVDDI 883
Query: 185 LPC*V*CTQGCSP*CFSN*KS-----------WQLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ S F+ K QLK+FLG+E+AHS +GI +CQ KYCL+
Sbjct: 884 I------LADNSLDEFTRIKQILDDHFKIKDLGQLKYFLGIEVAHSSQGISICQIKYCLD 937
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLHQ 406
LL +GL G KP T LDP+++LHQ
Sbjct: 938 LLQDTGLLGAKPAKTPLDPSVKLHQ 962
>gb|PNX71343.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 561
Score = 95.1 bits (235), Expect = 4e-20
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 11/143 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
L++SLYGL +ASRQW++KLT LL S G Q +DH+L +K T S +LL
Sbjct: 403 LIKSLYGLKQASRQWYEKLTSLLKSHGY----KQAYSDHSLFVKHTAASITILLVYVDDV 458
Query: 185 LPC*V*CTQGCSP*CFSN*K-----SWQ------LKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G S F + K ++Q LK+FLGLE+AHS GI LCQ KYCL+
Sbjct: 459 I------LAGNSLSKFQHIKDALHQAFQIKDLGILKYFLGLEVAHSKHGISLCQRKYCLD 512
Query: 332 LLAGSGLTG*KPVTTRLDPAIQL 400
L++ SGL G KPV+T DP+++L
Sbjct: 513 LISDSGLLGSKPVSTPSDPSLKL 535
>gb|PNX92373.1| retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Trifolium pratense]
Length = 1125
Score = 95.1 bits (235), Expect = 5e-20
Identities = 61/138 (44%), Positives = 78/138 (56%), Gaps = 5/138 (3%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
L++SLYGL +ASRQW+ KLT LLLS G Q +DH+L K F +LL
Sbjct: 743 LVKSLYGLKQASRQWYAKLTSLLLSHGY----KQAHSDHSLFTKHDGTHFTLLLVYVDDV 798
Query: 185 LPC*V*CTQ-----GCSP*CFSN*KSWQLKFFLGLEMAHSFKGIFLCQCKYCLELLAGSG 349
+ + F QLK+FLGLE+AHS KGI LCQ KYCL+LL+ SG
Sbjct: 799 ILAGNYMAEFTYIKDILHTAFKIKDLGQLKYFLGLEVAHSSKGISLCQRKYCLDLLSDSG 858
Query: 350 LTG*KPVTTRLDPAIQLH 403
G KP+TT D +++LH
Sbjct: 859 FLGAKPITTPSDASLRLH 876
>dbj|GAU46782.1| hypothetical protein TSUD_351810 [Trifolium subterraneum]
Length = 1512
Score = 94.0 bits (232), Expect = 1e-19
Identities = 62/145 (42%), Positives = 80/145 (55%), Gaps = 11/145 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
LL+SLYGL +ASR+W++KLT LLL G TQ +DH+L F LL
Sbjct: 1128 LLKSLYGLKQASRKWYEKLTSLLLKEGY----TQASSDHSLFTLKHGSDFTALLVYVDDI 1183
Query: 185 LPC*V*CTQGCSP*CFSN*KSWQ-----------LKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G S F+ K LK+FLG+E+AHS +GI +CQ KYCL+
Sbjct: 1184 I------LAGNSLQEFARIKLIMDNAFKIKDLGPLKYFLGIEVAHSKQGISICQRKYCLD 1237
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLHQ 406
LL +GL G KP T LDP+I+LHQ
Sbjct: 1238 LLKDTGLLGSKPAPTPLDPSIKLHQ 1262
>gb|PNX86354.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 512
Score = 93.2 bits (230), Expect = 2e-19
Identities = 61/144 (42%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
LL+SLYGL +ASR+W++KLT LL Q +DH++ IK T SF +LL
Sbjct: 126 LLKSLYGLKQASRKWYEKLTSTLLQHQY----HQASSDHSVFIKKTDASFTILLVYVDDV 181
Query: 185 LPC*V*CTQGCSP*CFSN*KS-----------WQLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G S F + KS LK+FLGLE++HS +GI LCQ YCL+
Sbjct: 182 I------LAGTSLVEFQHIKSVLHDSFQIKDLGTLKYFLGLEVSHSTQGISLCQRNYCLD 235
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLH 403
LL +GL G KPV+T +P+I+LH
Sbjct: 236 LLNDTGLLGAKPVSTPSEPSIKLH 259
>gb|PNX87108.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 517
Score = 93.2 bits (230), Expect = 2e-19
Identities = 61/144 (42%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
LL+SLYGL +ASR+W++KLT LL Q +DH++ IK T SF +LL
Sbjct: 126 LLKSLYGLKQASRKWYEKLTSTLLQHQY----HQASSDHSVFIKKTDASFTILLVYVDDV 181
Query: 185 LPC*V*CTQGCSP*CFSN*KS-----------WQLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G S F + KS LK+FLGLE++HS +GI LCQ YCL+
Sbjct: 182 I------LAGTSLVEFQHIKSVLHDSFQIKDLGTLKYFLGLEVSHSTQGISLCQRNYCLD 235
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLH 403
LL +GL G KPV+T +P+I+LH
Sbjct: 236 LLNDTGLLGAKPVSTPSEPSIKLH 259
>gb|PNX77692.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
gb|PNX79695.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 589
Score = 93.2 bits (230), Expect = 2e-19
Identities = 61/144 (42%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
LL+SLYGL +ASR+W++KLT LL Q +DH++ IK T SF +LL
Sbjct: 245 LLKSLYGLKQASRKWYEKLTSTLLQHQY----HQASSDHSVFIKKTDASFTILLVYVDDV 300
Query: 185 LPC*V*CTQGCSP*CFSN*KS-----------WQLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G S F + KS LK+FLGLE++HS +GI LCQ YCL+
Sbjct: 301 I------LAGTSLVEFQHIKSVLHDSFQIKDLGTLKYFLGLEVSHSTQGISLCQRNYCLD 354
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLH 403
LL +GL G KPV+T +P+I+LH
Sbjct: 355 LLNDTGLLGAKPVSTPSEPSIKLH 378
>gb|PNX94461.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 1000
Score = 93.2 bits (230), Expect = 2e-19
Identities = 63/144 (43%), Positives = 80/144 (55%), Gaps = 11/144 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
L++SLYGL +ASRQW+ KLT LLL+ G Q +DH+L K F +LL
Sbjct: 607 LVKSLYGLKQASRQWYAKLTSLLLAHGY----KQAHSDHSLFTKHDASHFTLLLVYVDDV 662
Query: 185 LPC*V*CTQGCSP*CFSN*KSW-----------QLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G F+ K+ LK+FLGLE+AHS KGI LCQ KYCL+
Sbjct: 663 I------IAGNYMAEFTYVKTLLHNAFKIKDLGTLKYFLGLEVAHSAKGISLCQRKYCLD 716
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLH 403
LL SGL G KPV+T D +I+LH
Sbjct: 717 LLTDSGLLGAKPVSTPSDASIKLH 740
>gb|PNY13965.1| peptide transporter PTR2 [Trifolium pratense]
Length = 1095
Score = 93.2 bits (230), Expect = 2e-19
Identities = 63/131 (48%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Frame = +2
Query: 32 KASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H*LPC*V*C-- 205
+ASRQWF KLT L+S G TQ QAD TLL K++ +SF+ LL L
Sbjct: 784 QASRQWFDKLTSFLISNGF----TQAQADXTLLTKTSGNSFLALLVYVDDILLAGPNLSD 839
Query: 206 -----TQGCSP*CFSN*KSWQLKFFLGLEMAHSFKGIFLCQCKYCLELLAGSGLTG*KPV 370
T S C N QLKFFLG E+ HS KGI + Q KYCL+LL SGLT KP
Sbjct: 840 FDAIKTALHSKFCIKN--LGQLKFFLGFEVDHSSKGIAVLQRKYCLDLLEDSGLTNSKPA 897
Query: 371 TTRLDPAIQLH 403
+T LDPA++LH
Sbjct: 898 STPLDPAVKLH 908
>gb|PNX65078.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 240
Score = 89.4 bits (220), Expect = 4e-19
Identities = 60/139 (43%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLR----- 169
L +SLYG +ASR+W++KL+ L + G TQ +D TL KSTK SF LL
Sbjct: 55 LTKSLYGXKQASRKWYEKLSQFLTTIGY----TQMPSDPTLFTKSTKDSFTTLLVYVDDI 110
Query: 170 -MT*H*LPC*V*CTQGCSP*CFSN*KSWQLKFFLGLEMAHSFKGIFLCQCKYCLELLAGS 346
+T + L + T+ C F LKFFLGLE+AHS +GI L Q KYCL+LL +
Sbjct: 111 VLTGNSL-AEIEATKSCLHKAFGIKDIGTLKFFLGLEVAHSQQGITLXQRKYCLDLLTET 169
Query: 347 GLTG*KPVTTRLDPAIQLH 403
G G KP + +DP+ +LH
Sbjct: 170 GTLGCKPSSVPMDPSNRLH 188
>gb|PNY05485.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 359
Score = 91.3 bits (225), Expect = 4e-19
Identities = 63/144 (43%), Positives = 79/144 (54%), Gaps = 11/144 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
L++SLYGL +ASRQW+ K T LLLS G Q DH+L K F +LL
Sbjct: 125 LVKSLYGLKQASRQWYAKHTSLLLSHGY----KQAHCDHSLFTKHDASHFTLLLVYVDDV 180
Query: 185 LPC*V*CTQGCSP*CFSN*KSW-----------QLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G FS K+ QLK+FLGLE+AHS KGI LCQ K+CL+
Sbjct: 181 I------IAGNHMAEFSYVKNLLHNAFKIKDLGQLKYFLGLEVAHSAKGISLCQRKHCLD 234
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLH 403
LL SGL G KPV+T + +I+LH
Sbjct: 235 LLTDSGLLGAKPVSTPSNASIKLH 258
>gb|PNX75793.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 733
Score = 92.0 bits (227), Expect = 6e-19
Identities = 60/145 (41%), Positives = 81/145 (55%), Gaps = 11/145 (7%)
Frame = +2
Query: 5 LLRSLYGLNKASRQWFKKLTHLLLSRGLVILLTQGQADHTLLIKSTKHSFIVLLRMT*H* 184
LL+SLYGL +ASR+W+++LT LL+ +G TQ +D++L HSF LL
Sbjct: 319 LLKSLYGLKQASRKWYERLTSLLVQQGY----TQSTSDYSLFTLKHDHSFTALLVYVDDI 374
Query: 185 LPC*V*CTQGCSP*CFSN*KS-----------WQLKFFLGLEMAHSFKGIFLCQCKYCLE 331
+ G S F+ K QLK+FLGLE+AHS GI +CQ KYCL+
Sbjct: 375 I------LAGDSLSEFARIKQILDREFKIKDLGQLKYFLGLEVAHSQSGISICQRKYCLD 428
Query: 332 LLAGSGLTG*KPVTTRLDPAIQLHQ 406
LL +GL G KP T LD + ++HQ
Sbjct: 429 LLKDTGLIGSKPAPTPLDHSTKIHQ 453