BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00036916
         (649 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009175791.1| RNA polymerase alpha subunit (chloroplast) [...   414   e-144
gb|AJE72745.1| RNA polymerase alpha subunit (plastid) [Astragalu...   412   e-143
gb|AJE71751.1| RNA polymerase alpha subunit (plastid) [Astragalu...   407   e-141
ref|YP_009429917.1| RNA polymerase alpha subunit (plastid) [Carm...   405   e-141
gb|AJE72248.1| RNA polymerase alpha subunit (plastid) [Oxytropis...   405   e-140
ref|YP_009440627.1| RNA polymerase alpha subunit (chloroplast) [...   402   e-139
ref|YP_009109918.1| RNA polymerase alpha subunit (chloroplast) [...   398   e-138
ref|YP_009109843.1| RNA polymerase alpha subunit (chloroplast) [...   398   e-138
ref|YP_001381697.1| RNA polymerase alpha subunit (chloroplast) [...   398   e-138
gb|AJE71609.1| RNA polymerase alpha subunit (plastid) [Melilotus...   396   e-137
gb|AIJ28052.1| RNA polymerase alpha subunit (chloroplast) [Trifo...   396   e-137
ref|YP_009141641.1| RNA polymerase alpha subunit (chloroplast) [...   395   e-137
gb|AIJ28178.1| RNA polymerase alpha subunit (chloroplast) [Trifo...   395   e-137
ref|YP_009389885.1| RpoA (chloroplast) [Caragana kozlowii] >gi|1...   395   e-136
gb|AJE72106.1| RNA polymerase alpha subunit (plastid) [Trifolium...   395   e-136
ref|YP_009334221.1| RpoA (chloroplast) [Caragana microphylla] >g...   394   e-136
ref|XP_003606056.2| DNA-directed RNA polymerase subunit alpha [M...   398   e-136
ref|YP_009327917.1| RNA polymerase alpha subunit (chloroplast) [...   393   e-136
ref|YP_009027180.1| RNA polymerase alpha subunit [Trifolium repe...   393   e-136
ref|YP_009027106.1| RNA polymerase alpha subunit [Trifolium aure...   392   e-135

>ref|YP_009175791.1| RNA polymerase alpha subunit (chloroplast) [Astragalus mongholicus
           var. nakaianus]
 ref|YP_009242985.1| RNA polymerase alpha subunit (chloroplast) [Astragalus mongholicus]
 gb|ALH42762.1| RNA polymerase alpha subunit (chloroplast) [Astragalus mongholicus
           var. nakaianus]
 gb|AMQ99248.1| RNA polymerase alpha subunit (chloroplast) [Astragalus mongholicus]
 gb|ANK78919.1| RNA polymerase alpha subunit (chloroplast) [Astragalus membranaceus
           var. membranaceus]
          Length = 333

 Score =  414 bits (1065), Expect = e-144
 Identities = 207/216 (95%), Positives = 207/216 (95%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT
Sbjct: 102 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNLENNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 317


>gb|AJE72745.1| RNA polymerase alpha subunit (plastid) [Astragalus crassicarpus]
          Length = 333

 Score =  412 bits (1059), Expect = e-143
 Identities = 205/216 (94%), Positives = 207/216 (95%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICFQGPGY+TAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT
Sbjct: 102 GTRDASICFQGPGYLTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNLENNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKSQEDLMKIEHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHFRVE 317


>gb|AJE71751.1| RNA polymerase alpha subunit (plastid) [Astragalus canadensis]
          Length = 335

 Score =  407 bits (1045), Expect = e-141
 Identities = 203/216 (93%), Positives = 205/216 (94%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICFQGPGYVTA+DIILPPSVEIVDDTQHIANLTE INLCIELQIERNRGYRIKT
Sbjct: 102 GTRDASICFQGPGYVTAKDIILPPSVEIVDDTQHIANLTESINLCIELQIERNRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQH VTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNLENNQHNVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKSQEDLMKIEHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHFRVE 317


>ref|YP_009429917.1| RNA polymerase alpha subunit (plastid) [Carmichaelia australis]
 gb|ASY01248.1| RNA polymerase alpha subunit (plastid) [Carmichaelia australis]
          Length = 335

 Score =  405 bits (1042), Expect = e-141
 Identities = 202/216 (93%), Positives = 206/216 (95%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGY+TAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIERNRGYRIKT
Sbjct: 102 GTRDASICFKGPGYLTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKDKLRKNKKEI LNSIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNLENNQHKVTLPLFTFHDRLVKDKLRKNKKEIALNSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKSQEDLMKIEHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHFRVE 317


>gb|AJE72248.1| RNA polymerase alpha subunit (plastid) [Oxytropis lambertii]
          Length = 333

 Score =  405 bits (1041), Expect = e-140
 Identities = 203/216 (93%), Positives = 205/216 (94%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASI F+GPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT
Sbjct: 102 GTRDASIFFKGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKD LRKNKKEIPLNSIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENFNLENNQHKVTLPLFTFHDRLVKDTLRKNKKEIPLNSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKSQEDLMKIEHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHFRVE 317


>ref|YP_009440627.1| RNA polymerase alpha subunit (chloroplast) [Lessertia frutescens]
 gb|ATG87693.1| RNA polymerase alpha subunit (chloroplast) [Lessertia frutescens]
          Length = 335

 Score =  402 bits (1032), Expect = e-139
 Identities = 201/216 (93%), Positives = 205/216 (94%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASIC +GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIERNRGYRIKT
Sbjct: 102 GTRDASICLKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQ+KVTLPLFTFHDRLVKDKLRKNKKEI LNSIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNLENNQNKVTLPLFTFHDRLVKDKLRKNKKEIALNSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKSQEDLMKIEHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHFRVE 317


>ref|YP_009109918.1| RNA polymerase alpha subunit (chloroplast) [Trifolium strictum]
 gb|AIJ28385.1| RNA polymerase alpha subunit (chloroplast) [Trifolium strictum]
          Length = 333

 Score =  398 bits (1023), Expect = e-138
 Identities = 199/216 (92%), Positives = 203/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIER RGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKDKLRK KKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLVKDKLRKTKKEIGLKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKS+EDLMKIEHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSEEDLMKIEHFRVE 317


>ref|YP_009109843.1| RNA polymerase alpha subunit (chloroplast) [Trifolium
           glanduliferum]
 gb|AIJ27883.1| RNA polymerase alpha subunit (chloroplast) [Trifolium
           glanduliferum]
          Length = 333

 Score =  398 bits (1023), Expect = e-138
 Identities = 199/216 (92%), Positives = 203/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIER RGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKDKLRK KKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLVKDKLRKTKKEIGLKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKS+EDLMKIEHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSEEDLMKIEHFRVE 317


>ref|YP_001381697.1| RNA polymerase alpha subunit (chloroplast) [Medicago truncatula]
 gb|AFR59943.1| RNA polymerase alpha subunit (plastid) [Medicago truncatula]
 gb|AFR60019.1| RNA polymerase alpha subunit (plastid) [Medicago truncatula]
 gb|AFR60095.1| RNA polymerase alpha subunit (plastid) [Medicago truncatula]
          Length = 333

 Score =  398 bits (1022), Expect = e-138
 Identities = 199/216 (92%), Positives = 203/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIER RGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRL+KDKLRKNKKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLLKDKLRKNKKEIALKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
            PRIYNCLKKSNIHTL+ELLNKSQEDLMKIEHFRVE
Sbjct: 282 SPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHFRVE 317


>gb|AJE71609.1| RNA polymerase alpha subunit (plastid) [Melilotus officinalis]
 gb|AJE71680.1| RNA polymerase alpha subunit (plastid) [Melilotus albus]
          Length = 333

 Score =  396 bits (1018), Expect = e-137
 Identities = 198/216 (91%), Positives = 202/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEI+D+TQHIANLTEPIN  IELQIER RGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIIDNTQHIANLTEPINFSIELQIERKRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKDKLRKNKKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLVKDKLRKNKKEIALKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKSQEDLMKIEHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHFRVE 317


>gb|AIJ28052.1| RNA polymerase alpha subunit (chloroplast) [Trifolium lupinaster]
          Length = 333

 Score =  396 bits (1017), Expect = e-137
 Identities = 198/216 (91%), Positives = 202/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIER RGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERERGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           L N QDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LENSQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKDKLRKNKKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLVKDKLRKNKKEIGLKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKSQEDLMK+EHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSQEDLMKMEHFRVE 317


>ref|YP_009141641.1| RNA polymerase alpha subunit (chloroplast) [Medicago hybrida]
 ref|YP_009141716.1| RNA polymerase alpha subunit (chloroplast) [Medicago papillosa]
 gb|AIL56166.1| RNA polymerase alpha subunit (chloroplast) [Medicago hybrida]
 gb|AIL56241.1| RNA polymerase alpha subunit (chloroplast) [Medicago papillosa]
 gb|AMC32273.1| RNA polymerase alpha subunit (chloroplast) [Medicago sativa]
          Length = 333

 Score =  395 bits (1016), Expect = e-137
 Identities = 198/216 (91%), Positives = 202/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIER RGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRL+KDKLRKNKKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLLKDKLRKNKKEIALKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
            PRIYNCLKKSNIHTL+ELLNKSQEDLMKIEH RVE
Sbjct: 282 SPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHLRVE 317


>gb|AIJ28178.1| RNA polymerase alpha subunit (chloroplast) [Trifolium occidentale]
          Length = 333

 Score =  395 bits (1016), Expect = e-137
 Identities = 196/216 (90%), Positives = 204/216 (94%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIER RGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           ++NIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQE+LFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 IDNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEMLFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKDKLRKNKKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLVKDKLRKNKKEIGLKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKK+NIHTL+ELLNKSQEDLMK+EHFRVE
Sbjct: 282 PPRIYNCLKKANIHTLLELLNKSQEDLMKMEHFRVE 317


>ref|YP_009389885.1| RpoA (chloroplast) [Caragana kozlowii]
 gb|APL97326.1| RpoA (chloroplast) [Caragana kozlowii]
          Length = 333

 Score =  395 bits (1015), Expect = e-136
 Identities = 197/216 (91%), Positives = 202/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+ QHIA LTEPINLC+ELQIERNRGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNRQHIAKLTEPINLCMELQIERNRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPL TFHDRLVKDKLRKNKKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNLENNQHKVTLPLLTFHDRLVKDKLRKNKKEIALKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKSQEDLMK+EHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSQEDLMKMEHFRVE 317


>gb|AJE72106.1| RNA polymerase alpha subunit (plastid) [Trifolium pratense]
 gb|ARI50257.1| RNA polymerase alpha subunit (chloroplast) [Trifolium pratense]
          Length = 333

 Score =  395 bits (1014), Expect = e-136
 Identities = 197/216 (91%), Positives = 203/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIER RGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           ++NIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 IDNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKDKLRK KKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLVKDKLRKKKKEIGLKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKS+IHTL+ELLNKSQEDLMKIEHFRVE
Sbjct: 282 PPRIYNCLKKSDIHTLLELLNKSQEDLMKIEHFRVE 317


>ref|YP_009334221.1| RpoA (chloroplast) [Caragana microphylla]
 ref|YP_009389961.1| RpoA (chloroplast) [Caragana korshinskii]
 gb|APL97428.1| RpoA (chloroplast) [Caragana microphylla]
 gb|APL97504.1| RpoA (chloroplast) [Caragana korshinskii]
          Length = 333

 Score =  394 bits (1012), Expect = e-136
 Identities = 197/216 (91%), Positives = 201/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+ QHIA LTEPINLC+ELQIERNRGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNRQHIAKLTEPINLCMELQIERNRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPL TFHDRLVKDKLRKNKKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNLENNQHKVTLPLLTFHDRLVKDKLRKNKKEIALKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL ELLNKSQEDLMK+EHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLSELLNKSQEDLMKMEHFRVE 317


>ref|XP_003606056.2| DNA-directed RNA polymerase subunit alpha [Medicago truncatula]
 gb|AES88253.2| DNA-directed RNA polymerase subunit alpha [Medicago truncatula]
          Length = 442

 Score =  398 bits (1022), Expect = e-136
 Identities = 199/216 (92%), Positives = 203/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIER RGYRIKT
Sbjct: 211 GTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKT 270

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 271 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 330

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRL+KDKLRKNKKEI L SIFIDQLEL
Sbjct: 331 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLLKDKLRKNKKEIALKSIFIDQLEL 390

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
            PRIYNCLKKSNIHTL+ELLNKSQEDLMKIEHFRVE
Sbjct: 391 SPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHFRVE 426


>ref|YP_009327917.1| RNA polymerase alpha subunit (chloroplast) [Medicago falcata]
 gb|AOG66174.1| RNA polymerase alpha subunit (chloroplast) [Medicago sativa]
 gb|APC60461.1| RNA polymerase alpha subunit (chloroplast) [Medicago falcata]
          Length = 333

 Score =  393 bits (1010), Expect = e-136
 Identities = 197/216 (91%), Positives = 201/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+TQHIANL EPINLCIELQIER RGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLIEPINLCIELQIERKRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRL+KDKLRKNKKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFHDRLLKDKLRKNKKEIALKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
            PRIYNCLKKSNIHTL+ELLNKSQEDLMKIEH RVE
Sbjct: 282 SPRIYNCLKKSNIHTLLELLNKSQEDLMKIEHLRVE 317


>ref|YP_009027180.1| RNA polymerase alpha subunit [Trifolium repens]
 gb|AGO63607.1| RNA polymerase alpha subunit (plastid) [Trifolium repens]
 gb|AJE72603.1| RNA polymerase alpha subunit (plastid) [Trifolium repens]
          Length = 333

 Score =  393 bits (1010), Expect = e-136
 Identities = 195/216 (90%), Positives = 203/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTRDASICF+GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIER RGYRIKT
Sbjct: 102 GTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           ++NIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQE+LFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 IDNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEMLFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTFHDRLVKDKLRK+KKEI   SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENFNFENNQHKVTLPLFTFHDRLVKDKLRKSKKEIGFQSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKSNIHTL+ELLNKSQEDLMK+EHFRVE
Sbjct: 282 PPRIYNCLKKSNIHTLLELLNKSQEDLMKMEHFRVE 317


>ref|YP_009027106.1| RNA polymerase alpha subunit [Trifolium aureum]
 gb|AGO63760.1| RNA polymerase alpha subunit (plastid) [Trifolium aureum]
          Length = 335

 Score =  392 bits (1008), Expect = e-135
 Identities = 196/216 (90%), Positives = 202/216 (93%)
 Frame = -1

Query: 649 GTRDASICFQGPGYVTAQDIILPPSVEIVDDTQHIANLTEPINLCIELQIERNRGYRIKT 470
           GTR+ASICF+GPGYVTAQDIILPPSVEIVD+TQHIANLTEPINLCIELQIER RGY IKT
Sbjct: 102 GTREASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYHIKT 161

Query: 469 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 290
           LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN
Sbjct: 162 LNNIQDGSYTIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRN 221

Query: 289 LIDLFIPFLHAXXXXXXXXXNQHKVTLPLFTFHDRLVKDKLRKNKKEIPLNSIFIDQLEL 110
           LIDLFIPFLHA         NQHKVTLPLFTF+DRLVKDKLRKNKKEI L SIFIDQLEL
Sbjct: 222 LIDLFIPFLHAEEENLNFENNQHKVTLPLFTFYDRLVKDKLRKNKKEIRLKSIFIDQLEL 281

Query: 109 PPRIYNCLKKSNIHTLVELLNKSQEDLMKIEHFRVE 2
           PPRIYNCLKKS IHTL+ELLNKSQEDLMK+EHFRVE
Sbjct: 282 PPRIYNCLKKSKIHTLLELLNKSQEDLMKMEHFRVE 317