BLASTX nr result

ID: Astragalus22_contig00035922 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00035922
         (418 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX72142.1| pentatricopeptide repeat-containing protein at3g4...    55   5e-06
gb|PNX94571.1| dynamin-related protein 4c-like [Trifolium pratense]    55   7e-06

>gb|PNX72142.1| pentatricopeptide repeat-containing protein at3g49740-like protein,
           partial [Trifolium pratense]
          Length = 385

 Score = 55.1 bits (131), Expect = 5e-06
 Identities = 33/76 (43%), Positives = 44/76 (57%)
 Frame = +1

Query: 169 RKMIHRGKVRAVKVLMKRKTVLTTGCNLLLAYSNNFPQHYEIVVVLHRKMIYNGSVLAPR 348
           RKMI++G   A KVL   K       +  +A + +F     +V +LHRKMI  G+V   +
Sbjct: 303 RKMIYKGSFHAPKVLTNLKDWQPKNGSRKVATNVSF-----VVAILHRKMINRGNVRDAK 357

Query: 349 VFLIKWKAIPLKHGTC 396
           V L KWK +PLKHGTC
Sbjct: 358 V-LSKWKVLPLKHGTC 372


>gb|PNX94571.1| dynamin-related protein 4c-like [Trifolium pratense]
          Length = 551

 Score = 54.7 bits (130), Expect = 7e-06
 Identities = 44/105 (41%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
 Frame = +1

Query: 82  VGLIFASADPLPTRSLLFPRLIKLVEVLHRKMIHRGKVRAVKVLMKRKTVLTTGCNLLLA 261
           V  ++ S   L    LL  +  KLV VLHRKMI +G   A KVL K K  L         
Sbjct: 432 VAPLYVSYCHLTKDFLLIFQHTKLVIVLHRKMIFKGSFHAPKVLTKLKDWLPKH-----G 486

Query: 262 YSNNFPQHYEIV-VVLHRKMIYNGSVLAPRVFLIKWKAIPLKHGT 393
           Y   F  + ++V  +L RKMI  GSV    V L+KWK +P KHGT
Sbjct: 487 Y-RKFVVNVDLVEAILQRKMIQRGSVHVSLV-LLKWKTLPPKHGT 529


Top