BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00035390
         (486 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX67381.1| putative reverse transcriptase, partial [Trifoliu...    70   6e-30
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    67   1e-29
dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subt...    67   1e-29
dbj|GAU50504.1| hypothetical protein TSUD_409790 [Trifolium subt...    65   3e-29
gb|PNX92714.1| ribonuclease H [Trifolium pratense]                     64   6e-28
dbj|GAU37589.1| hypothetical protein TSUD_365100 [Trifolium subt...    59   6e-27
gb|PNX71724.1| ribonuclease H, partial [Trifolium pratense]            61   6e-27
gb|PNX92211.1| ribonuclease H, partial [Trifolium pratense]            61   2e-26
gb|PNY05589.1| ribonuclease H [Trifolium pratense]                     61   2e-26
gb|PNY14401.1| ribonuclease H [Trifolium pratense]                     62   7e-26
gb|KYP61720.1| Putative ribonuclease H protein At1g65750 family,...    69   1e-24
gb|KYP78366.1| Putative ribonuclease H protein At1g65750 family ...    58   6e-23
gb|PNY13870.1| ribonuclease H [Trifolium pratense]                     68   1e-22
gb|KYP32780.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]    58   2e-22
gb|KYP67620.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]    58   2e-22
dbj|GAU21723.1| hypothetical protein TSUD_328480 [Trifolium subt...    57   5e-22
dbj|GAU51664.1| hypothetical protein TSUD_268670 [Trifolium subt...    69   8e-22
gb|PNY01679.1| ribonuclease H, partial [Trifolium pratense]            67   2e-21
gb|KYP77119.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]    64   2e-21
gb|PNX93586.1| ribonuclease H, partial [Trifolium pratense]            51   3e-21

>gb|PNX67381.1| putative reverse transcriptase, partial [Trifolium pratense]
          Length = 197

 Score = 69.7 bits (169), Expect(3) = 6e-30
 Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 10/84 (11%)
 Frame = +1

Query: 13  KKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMGC----------RLLNKPGRL 162
           K  K+  I G+  T+ +DKYLGF +  GR K  DFH ++            RLLNKPGRL
Sbjct: 21  KINKLTSISGIRSTTSLDKYLGFPILKGRAKRNDFHFIINNMQSWLASWKNRLLNKPGRL 80

Query: 163 TLGTSVLSSIPSYGTQVHTVVPSI 234
            L +S+LSSIP+Y  QV+ +  SI
Sbjct: 81  ALASSILSSIPNYYMQVYWLPQSI 104



 Score = 60.8 bits (146), Expect(3) = 6e-30
 Identities = 27/46 (58%), Positives = 32/46 (69%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           I RPK  GGLG+R AR  N  LLGKL WD+  S NKLWV++  +KY
Sbjct: 133 IARPKIQGGLGIRPAREANXCLLGKLVWDMVQSSNKLWVNLFSKKY 178



 Score = 48.5 bits (114), Expect(3) = 6e-30
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG 313
           + W PQSIC+ +D+  RNF+W+ +  KG+H+VG
Sbjct: 97  VYWLPQSICDSIDQTTRNFIWRDSNNKGIHLVG 129


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
           [Medicago truncatula]
          Length = 1296

 Score = 66.6 bits (161), Expect(3) = 1e-29
 Identities = 29/46 (63%), Positives = 35/46 (76%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           ITRPK +GGLG+R AR  N  LLGKL WD+  S NKLWV++L +KY
Sbjct: 845 ITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLLAKKY 890



 Score = 57.8 bits (138), Expect(3) = 1e-29
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
 Frame = +1

Query: 13  KKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMGC----------RLLNKPGRL 162
           K   +  I G+  T+ + KYLGF +  GR K  DF+ ++            RLLN+ GRL
Sbjct: 733 KINNLTAISGIQSTTTLGKYLGFPMLQGRPKRSDFNFILEKMQTRLASWKNRLLNRTGRL 792

Query: 163 TLGTSVLSSIPSYGTQVHTVVPSI 234
           TL TSVLS+IP+Y  Q++ +  +I
Sbjct: 793 TLATSVLSTIPTYYMQINWLPQNI 816



 Score = 53.5 bits (127), Expect(3) = 1e-29
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG*KTI 325
           I W PQ+IC+ +D+  RNFLW+G+  KG+H+V  KTI
Sbjct: 809 INWLPQNICDSIDQTARNFLWKGSNNKGIHLVNWKTI 845


>dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subterraneum]
          Length = 1075

 Score = 67.0 bits (162), Expect(3) = 1e-29
 Identities = 29/46 (63%), Positives = 35/46 (76%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           I RPK +GGLG+R AR  NT+LLGKL WD+  S NKLWV++L  KY
Sbjct: 644 IARPKNLGGLGIRPAREANTSLLGKLVWDMVQSSNKLWVNLLSNKY 689



 Score = 63.2 bits (152), Expect(3) = 1e-29
 Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
 Frame = +1

Query: 13  KKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMGC----------RLLNKPGRL 162
           K  K+  + G+  T  +DKYLGF +  GR K  DF+ ++            RLLNKPGRL
Sbjct: 532 KINKLTSLSGIRSTVSLDKYLGFPILKGRAKRNDFNFIIDKMQSRLASWKNRLLNKPGRL 591

Query: 163 TLGTSVLSSIPSYGTQVHTVVPSI 234
            L +SVLSSIP+Y  Q+  +  SI
Sbjct: 592 ALASSVLSSIPTYYMQIAWLPQSI 615



 Score = 47.8 bits (112), Expect(3) = 1e-29
 Identities = 17/33 (51%), Positives = 24/33 (72%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG 313
           I W PQSIC+ +D+  R FLW+ +  KG+H+VG
Sbjct: 608 IAWLPQSICDSIDQTTRKFLWKDSNNKGIHLVG 640


>dbj|GAU50504.1| hypothetical protein TSUD_409790 [Trifolium subterraneum]
          Length = 902

 Score = 64.7 bits (156), Expect(3) = 3e-29
 Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 10/85 (11%)
 Frame = +1

Query: 10  TKKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFH---DVMGCR-------LLNKPGR 159
           TK  K+  I G+  T  +DKYLGF +  GR K  DFH   D M  R       LLNK GR
Sbjct: 458 TKINKLTSISGIRSTVSLDKYLGFPILKGRAKRSDFHFIIDKMQSRLASWKNKLLNKLGR 517

Query: 160 LTLGTSVLSSIPSYGTQVHTVVPSI 234
           L L +SV+SSIPSY  Q+  +  SI
Sbjct: 518 LALASSVISSIPSYYMQISWLPQSI 542



 Score = 63.5 bits (153), Expect(3) = 3e-29
 Identities = 29/53 (54%), Positives = 35/53 (66%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKYFPLQSFL 485
           I RPK+ GGL +R AR  N +LLGKL WD+  S NKLWV +L  KY    +FL
Sbjct: 571 IARPKQHGGLSIRTARGQNISLLGKLVWDMVQSSNKLWVDLLSSKYVKGSTFL 623



 Score = 48.5 bits (114), Expect(3) = 3e-29
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG*KTI 325
           I W PQSIC+ +D+  RNF+W+ +  KG+H+V  K I
Sbjct: 535 ISWLPQSICDSIDQTTRNFIWRDSNNKGIHLVSWKKI 571


>gb|PNX92714.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score = 64.3 bits (155), Expect(3) = 6e-28
 Identities = 29/48 (60%), Positives = 35/48 (72%)
 Frame = +3

Query: 321 QLITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           Q I+ PKR GGLG+R AR  NT+LLGKL WDL    +KLWV +L +KY
Sbjct: 850 QKISCPKRCGGLGIRAARDMNTSLLGKLVWDLLQDSDKLWVRVLSDKY 897



 Score = 62.4 bits (150), Expect(3) = 6e-28
 Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
 Frame = +1

Query: 13  KKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMG----------CRLLNKPGRL 162
           K +++  I G+  T  + KYLGF + NGR K+ DF  ++            +LLNKPGRL
Sbjct: 740 KIQQLTSITGIRSTPSLGKYLGFPILNGRAKKSDFDFIIEKMQTRLASWKSKLLNKPGRL 799

Query: 163 TLGTSVLSSIPSYGTQVHTVVPSI 234
            L +SVL+SIPSY  Q+  +  SI
Sbjct: 800 ALASSVLTSIPSYYMQIAWLPQSI 823



 Score = 45.4 bits (106), Expect(3) = 6e-28
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG*KTIN 328
           I W PQSICN +D   R+F+W+G+   G+++VG + I+
Sbjct: 816 IAWLPQSICNIIDHTTRHFIWKGSTNTGINLVGWQKIS 853


>dbj|GAU37589.1| hypothetical protein TSUD_365100 [Trifolium subterraneum]
          Length = 648

 Score = 59.3 bits (142), Expect(3) = 6e-27
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
 Frame = +1

Query: 1   VLATKKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFH---DVMGCRL-------LNK 150
           V   K +K+  +  +  T+ + KYLGF + +GR K+EDF+   D +  RL       LNK
Sbjct: 287 VTRRKVDKMTTLSNIRSTTSLGKYLGFPMISGRAKKEDFNFILDKINSRLASWKNKFLNK 346

Query: 151 PGRLTLGTSVLSSIPSYGTQVHTVVPSI 234
            GR+TL  SVL+SIP+Y  Q+H +  +I
Sbjct: 347 LGRVTLAKSVLNSIPTYYMQIHWLPSAI 374



 Score = 58.9 bits (141), Expect(3) = 6e-27
 Identities = 25/46 (54%), Positives = 35/46 (76%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           I + K+ GGLGVR+AR  NTA+LGKL WD+  + NK WV ++++KY
Sbjct: 403 IIQTKKDGGLGVRLARETNTAMLGKLVWDIQQNTNKPWVHMIKDKY 448



 Score = 50.4 bits (119), Expect(3) = 6e-27
 Identities = 18/37 (48%), Positives = 27/37 (72%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG*KTI 325
           I W P +IC+++D+  RNF+W+GN  KG+H+V   TI
Sbjct: 367 IHWLPSAICSKIDQTTRNFIWKGNTNKGIHLVNWHTI 403


>gb|PNX71724.1| ribonuclease H, partial [Trifolium pratense]
          Length = 585

 Score = 60.8 bits (146), Expect(3) = 6e-27
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
 Frame = +1

Query: 13  KKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMGC----------RLLNKPGRL 162
           K  ++  + G+  T+ +DKYLGF +  GR K+ DF  ++            RLLNKPGR+
Sbjct: 271 KVNRLTSLSGIRSTTSLDKYLGFPILKGRPKKSDFLFIIDKMQSRLASWRNRLLNKPGRI 330

Query: 163 TLGTSVLSSIPSYGTQVHTVVPSI 234
            L +SVLSSIP+Y  Q+  +  SI
Sbjct: 331 ALASSVLSSIPTYYMQIAWLPQSI 354



 Score = 58.9 bits (141), Expect(3) = 6e-27
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           I  PK++GGLG+R AR  NT LLGKL WD+  S +KLWV+I   +Y
Sbjct: 383 IACPKKLGGLGLRSARDANTCLLGKLVWDILQSKDKLWVNIFSHRY 428



 Score = 48.9 bits (115), Expect(3) = 6e-27
 Identities = 19/37 (51%), Positives = 26/37 (70%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG*KTI 325
           I W PQSIC+ +D+V RNF+W+    KG+H+V  K I
Sbjct: 347 IAWLPQSICDSIDQVTRNFIWRDANNKGIHLVSWKKI 383


>gb|PNX92211.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1462

 Score = 60.8 bits (146), Expect(3) = 2e-26
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +3

Query: 327  ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
            I+RPK +GGLG+R AR  N  LLGKL WDL  S NKLWV++   +Y
Sbjct: 1067 ISRPKNLGGLGLRPARDANICLLGKLVWDLLQSTNKLWVNVFTYRY 1112



 Score = 58.5 bits (140), Expect(3) = 2e-26
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
 Frame = +1

Query: 13   KKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMGC----------RLLNKPGRL 162
            K  ++  + G+  T+ ++KYLGF +  GR K+ DF  ++            +LLNKPGRL
Sbjct: 955  KINRLTSLSGIRNTTSLEKYLGFPILKGRAKKSDFLFIIEKMQSRLASWKNKLLNKPGRL 1014

Query: 163  TLGTSVLSSIPSYGTQVHTVVPSI 234
             L +SVLSSIP+Y  Q+  +  SI
Sbjct: 1015 ALASSVLSSIPNYYMQIAWLPQSI 1038



 Score = 47.4 bits (111), Expect(3) = 2e-26
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +2

Query: 215  IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG*KTIN 328
            I W PQSIC+ +D+  RNF+W+ +  KG H+V  K I+
Sbjct: 1031 IAWLPQSICDGIDQTTRNFIWRDSNNKGTHLVSWKKIS 1068


>gb|PNY05589.1| ribonuclease H [Trifolium pratense]
          Length = 1360

 Score = 60.8 bits (146), Expect(3) = 2e-26
 Identities = 27/46 (58%), Positives = 33/46 (71%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           I+RPK +GGLG+R AR  N  LLGKL WDL  S NKLWV++   +Y
Sbjct: 852 ISRPKNLGGLGLRPARDANICLLGKLVWDLLQSTNKLWVNVFTYRY 897



 Score = 58.5 bits (140), Expect(3) = 2e-26
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
 Frame = +1

Query: 13  KKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMGC----------RLLNKPGRL 162
           K  ++  + G+  T+ ++KYLGF +  GR K+ DF  ++            +LLNKPGRL
Sbjct: 740 KINRLTSLSGIRNTTSLEKYLGFPILKGRAKKSDFLFIIEKMQSRLASWKNKLLNKPGRL 799

Query: 163 TLGTSVLSSIPSYGTQVHTVVPSI 234
            L +SVLSSIP+Y  Q+  +  SI
Sbjct: 800 ALASSVLSSIPNYYMQIAWLPQSI 823



 Score = 47.4 bits (111), Expect(3) = 2e-26
 Identities = 18/38 (47%), Positives = 26/38 (68%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG*KTIN 328
           I W PQSIC+ +D+  RNF+W+ +  KG H+V  K I+
Sbjct: 816 IAWLPQSICDGIDQTTRNFIWRDSNNKGTHLVSWKKIS 853


>gb|PNY14401.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score = 62.0 bits (149), Expect(3) = 7e-26
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           I+RPK +GGLG+R AR  N  LLGKL WDL  S NKLWV+I   +Y
Sbjct: 852 ISRPKNLGGLGLRSARDANICLLGKLVWDLLQSTNKLWVNIFSHRY 897



 Score = 53.1 bits (126), Expect(3) = 7e-26
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
 Frame = +1

Query: 13  KKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDF---HDVMGCRL-------LNKPGRL 162
           K  ++  + G+  T  ++KYLGF +  GR K+ DF    + M  RL       LNK GRL
Sbjct: 740 KIHRLTSLSGIRNTLSLEKYLGFPILQGRAKKTDFLFIFEKMQRRLASWKNKILNKSGRL 799

Query: 163 TLGTSVLSSIPSYGTQVHTVVPSI 234
            L +SVLSSIP+Y  Q+  +  SI
Sbjct: 800 ALASSVLSSIPTYYMQITWLPQSI 823



 Score = 50.1 bits (118), Expect(3) = 7e-26
 Identities = 19/38 (50%), Positives = 30/38 (78%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG*KTIN 328
           I W PQSIC+ +D++ RNFLW+ + +KG+++VG K I+
Sbjct: 816 ITWLPQSICDGIDQITRNFLWKDSNKKGINLVGWKKIS 853


>gb|KYP61720.1| Putative ribonuclease H protein At1g65750 family, partial [Cajanus
           cajan]
          Length = 479

 Score = 69.3 bits (168), Expect(3) = 1e-24
 Identities = 30/46 (65%), Positives = 37/46 (80%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           +TRPK  GGLG+R AR+ NTALLGKL WDL    ++LWVS+L+EKY
Sbjct: 311 LTRPKNCGGLGIRTARNQNTALLGKLVWDLLHPMHQLWVSVLKEKY 356



 Score = 48.5 bits (114), Expect(3) = 1e-24
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
 Frame = +1

Query: 61  IDKYLGFKLFNGRVKEEDFHDVMG----------CRLLNKPGRLTLGTSVLSSIPSYGTQ 210
           I+ YLGF +F GR+   DF  ++             LLNK GR+TL   VL+++PSYG Q
Sbjct: 215 IENYLGFPMFQGRIHRRDFMALIERVNSKLTGWKSALLNKAGRVTLANVVLTALPSYGMQ 274

Query: 211 VH 216
           ++
Sbjct: 275 LY 276



 Score = 43.1 bits (100), Expect(3) = 1e-24
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = +2

Query: 221 WFPQSICNQVDRVIRNFLWQGNREKGMHMVG 313
           W+PQ IC+ +D+ +R+F+W     KG HMVG
Sbjct: 277 WYPQYICDFIDKSVRSFIWHSMEGKGPHMVG 307


>gb|KYP78366.1| Putative ribonuclease H protein At1g65750 family [Cajanus cajan]
          Length = 1090

 Score = 58.2 bits (139), Expect(3) = 6e-23
 Identities = 27/53 (50%), Positives = 34/53 (64%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKYFPLQSFL 485
           ITR +R GGL  R++R  N +LLGKL WDL    +K WVSI+ +KY    S L
Sbjct: 586 ITRRRREGGLNTRISRFKNVSLLGKLVWDLLQGHDKFWVSIMSKKYLLSDSIL 638



 Score = 57.4 bits (137), Expect(3) = 6e-23
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 10/82 (12%)
 Frame = +1

Query: 1   VLATKKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMG----------CRLLNK 150
           + + KK +++ I  + FT+ + KYLGF +F GR + E F  V             +LL+K
Sbjct: 470 ITSAKKARLQGISNIRFTTSLGKYLGFPIFYGRPRREVFQPVFDRISAKLATWKGKLLSK 529

Query: 151 PGRLTLGTSVLSSIPSYGTQVH 216
           PGR+TL  +V+SSIP++  Q++
Sbjct: 530 PGRVTLANAVISSIPTFFMQLY 551



 Score = 39.7 bits (91), Expect(3) = 6e-23
 Identities = 13/30 (43%), Positives = 24/30 (80%)
 Frame = +2

Query: 221 WFPQSICNQVDRVIRNFLWQGNREKGMHMV 310
           WFP  IC+ +D++ R+F+W+G+  KG+++V
Sbjct: 552 WFPNYICSTLDQMSRDFIWKGSSGKGINLV 581


>gb|PNY13870.1| ribonuclease H [Trifolium pratense]
          Length = 769

 Score = 67.8 bits (164), Expect(2) = 1e-22
 Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 10/77 (12%)
 Frame = +1

Query: 16  KEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMG----------CRLLNKPGRLT 165
           ++ I     ++ T R DKYLGFK+F G+V+++DF+D+             RLLNKPGR+ 
Sbjct: 442 RDTIAATTQIHATDRFDKYLGFKMFYGKVRKQDFNDIYDRVSAKLASWKGRLLNKPGRVV 501

Query: 166 LGTSVLSSIPSYGTQVH 216
           L  SV+S++PSY  Q+H
Sbjct: 502 LANSVISALPSYHMQIH 518



 Score = 66.2 bits (160), Expect(2) = 1e-22
 Identities = 28/46 (60%), Positives = 37/46 (80%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           IT+P+R GGLGVR+AR  N  LLGKL W++ +SP+KLWV++  EKY
Sbjct: 553 ITQPRRYGGLGVRIARIQNVFLLGKLVWEILNSPSKLWVTLFAEKY 598


>gb|KYP32780.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]
          Length = 1123

 Score = 58.2 bits (139), Expect(3) = 2e-22
 Identities = 27/53 (50%), Positives = 34/53 (64%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKYFPLQSFL 485
           ITR +R GGL  R++R  N +LLGKL WDL    +K WVSI+ +KY    S L
Sbjct: 720 ITRRRREGGLNTRISRFKNVSLLGKLVWDLLQGHDKFWVSIMSKKYLLSDSIL 772



 Score = 55.8 bits (133), Expect(3) = 2e-22
 Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 10/82 (12%)
 Frame = +1

Query: 1   VLATKKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMGC----------RLLNK 150
           + + KK +I+ I  + FT+ + KYLGF +F GR + E F  VM            +LL+K
Sbjct: 605 ITSAKKARIQGISNIRFTT-LGKYLGFPIFYGRPRREVFQPVMDRISAKLATWKGKLLSK 663

Query: 151 PGRLTLGTSVLSSIPSYGTQVH 216
           PGR+TL  +V+SSIP++  Q++
Sbjct: 664 PGRVTLANAVISSIPTFFMQLY 685



 Score = 39.7 bits (91), Expect(3) = 2e-22
 Identities = 13/30 (43%), Positives = 24/30 (80%)
 Frame = +2

Query: 221 WFPQSICNQVDRVIRNFLWQGNREKGMHMV 310
           WFP  IC+ +D++ R+F+W+G+  KG+++V
Sbjct: 686 WFPNYICSTLDQMSRDFIWKGSSGKGINLV 715


>gb|KYP67620.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]
          Length = 756

 Score = 58.2 bits (139), Expect(3) = 2e-22
 Identities = 27/53 (50%), Positives = 34/53 (64%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKYFPLQSFL 485
           ITR +R GGL  R++R  N +LLGKL WDL    +K WVSI+ +KY    S L
Sbjct: 696 ITRRRREGGLNTRISRFKNVSLLGKLVWDLLQGHDKFWVSIMSKKYLLSDSIL 748



 Score = 55.8 bits (133), Expect(3) = 2e-22
 Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 10/82 (12%)
 Frame = +1

Query: 1   VLATKKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMGC----------RLLNK 150
           + + KK +I+ I  + FT+ + KYLGF +F GR + E F  VM            +LL+K
Sbjct: 581 ITSAKKARIQGISNIRFTT-LGKYLGFPIFYGRPRREVFQPVMDRISAKLATWKGKLLSK 639

Query: 151 PGRLTLGTSVLSSIPSYGTQVH 216
           PGR+TL  +V+SSIP++  Q++
Sbjct: 640 PGRVTLANAVISSIPTFFMQLY 661



 Score = 39.7 bits (91), Expect(3) = 2e-22
 Identities = 13/30 (43%), Positives = 24/30 (80%)
 Frame = +2

Query: 221 WFPQSICNQVDRVIRNFLWQGNREKGMHMV 310
           WFP  IC+ +D++ R+F+W+G+  KG+++V
Sbjct: 662 WFPNYICSTLDQMSRDFIWKGSSGKGINLV 691


>dbj|GAU21723.1| hypothetical protein TSUD_328480 [Trifolium subterraneum]
          Length = 806

 Score = 57.0 bits (136), Expect(3) = 5e-22
 Identities = 23/53 (43%), Positives = 38/53 (71%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKYFPLQSFL 485
           IT+ K++GG+G+R AR  NT+LLGKL W++  + + LWV +++ KY   ++ L
Sbjct: 530 ITKSKKLGGVGIRKARDANTSLLGKLVWNIHQNSDALWVKVIQHKYLKEENLL 582



 Score = 48.1 bits (113), Expect(3) = 5e-22
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 13/81 (16%)
 Frame = +1

Query: 10  TKKEKIKMI---LGMNFTSRIDKYLGFKLFNGRVKE---EDFHDVMGCRL-------LNK 150
           T+  KI  I   +G+N T  ++KYLGF + +GR++    E F + +  RL       LNK
Sbjct: 414 TRSGKISSIVASIGINRTLSLEKYLGFPMMHGRLRRRYFEFFEEKISKRLAIWQHNLLNK 473

Query: 151 PGRLTLGTSVLSSIPSYGTQV 213
            GR+TL  SVL+ IP+Y  Q+
Sbjct: 474 AGRMTLIKSVLNFIPNYYMQI 494



 Score = 47.0 bits (110), Expect(3) = 5e-22
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG 313
           I W PQ+ C+ +DR  RNF+W+G+ + G+H+VG
Sbjct: 494 IAWLPQTTCDVIDRTTRNFIWKGSSDIGIHLVG 526


>dbj|GAU51664.1| hypothetical protein TSUD_268670 [Trifolium subterraneum]
          Length = 1231

 Score = 68.9 bits (167), Expect(2) = 8e-22
 Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 11/83 (13%)
 Frame = +1

Query: 7    ATKKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMG----------CRLLNKPG 156
            +TK  K+  I G+  T+ +DKYLGF +  GR K  DFH ++            RLLNKPG
Sbjct: 765  STKITKLTSISGIRSTTSLDKYLGFPILKGRAKRSDFHFIINKMQSRLASWKNRLLNKPG 824

Query: 157  RLTLGTSVLSSIPSYGTQ-VHTV 222
            RL L +SVLSSIP+Y  Q +H V
Sbjct: 825  RLALASSVLSSIPNYYMQGIHLV 847



 Score = 62.4 bits (150), Expect(2) = 8e-22
 Identities = 28/46 (60%), Positives = 33/46 (71%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           I RPK  GGLG+R AR  N  LLGKL WD+  S NKLWV++L +KY
Sbjct: 852 IARPKIQGGLGIRPAREANICLLGKLVWDMVQSSNKLWVNLLSKKY 897


>gb|PNY01679.1| ribonuclease H, partial [Trifolium pratense]
          Length = 995

 Score = 66.6 bits (161), Expect(2) = 2e-21
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKY 464
           IT+P+R GGLGVR+AR  N +LLGKL W++  SP+KLWV +  EKY
Sbjct: 774 ITQPRRFGGLGVRIARLQNVSLLGKLVWEILHSPDKLWVKLFEEKY 819



 Score = 63.5 bits (153), Expect(2) = 2e-21
 Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 10/83 (12%)
 Frame = +1

Query: 16  KEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMG----------CRLLNKPGRLT 165
           +++I     ++ T R ++YLGFK+F G+V ++DF D+             RLLNKPGR+ 
Sbjct: 663 RDRIAATSQIHATDRFERYLGFKMFYGKVTKQDFSDIYDRVSAKLASWKSRLLNKPGRVV 722

Query: 166 LGTSVLSSIPSYGTQVHTVVPSI 234
           L  SV+SS+PSY  Q++ +  S+
Sbjct: 723 LANSVISSLPSYHMQINWLPQSM 745


>gb|KYP77119.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]
          Length = 651

 Score = 63.5 bits (153), Expect(3) = 2e-21
 Identities = 29/54 (53%), Positives = 37/54 (68%)
 Frame = +3

Query: 324 LITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKLWVSILREKYFPLQSFL 485
           ++T+PK +GGLGVR AR  N +LLGKL WDL ++P K+WV IL   Y    S L
Sbjct: 435 VVTQPKELGGLGVREARRVNVSLLGKLVWDLLTAPQKIWVQILSSLYLHGNSIL 488



 Score = 53.9 bits (128), Expect(3) = 2e-21
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
 Frame = +1

Query: 1   VLATKKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDFHDVMG----------CRLLNK 150
           VL  + + ++ +LG+  T++I KYLG  +  G+ +  +FHDVM            RLLNK
Sbjct: 319 VLQRRIDALEGLLGIGHTTQIGKYLGVPMTQGQPRCANFHDVMDKIQGRLAAWKSRLLNK 378

Query: 151 PGRLTLGTSVLSSIPSYGTQ 210
            GRL L  S +SSIP Y  Q
Sbjct: 379 AGRLCLVKSTISSIPVYSMQ 398



 Score = 32.3 bits (72), Expect(3) = 2e-21
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 221 WFPQSICNQVDRVIRNFLW 277
           W PQ++CN++D+  R  LW
Sbjct: 401 WLPQAVCNKIDQACRRMLW 419


>gb|PNX93586.1| ribonuclease H, partial [Trifolium pratense]
          Length = 953

 Score = 50.8 bits (120), Expect(3) = 3e-21
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
 Frame = +1

Query: 13   KKEKIKMILGMNFTSRIDKYLGFKLFNGRVKEEDF--------HDVMGCR--LLNKPGRL 162
            K + I  I G+  T+ ++KYLGF + +GR+ + D+        H +   +  LLNK GRL
Sbjct: 762  KIDSIVSITGIQNTNSLEKYLGFPIIHGRLCKRDYDFFIDKIQHRLASWKNKLLNKAGRL 821

Query: 163  TLGTSVLSSIPSYGTQVHTVVPSI 234
             L  SVL+SIP+Y  Q++ +  SI
Sbjct: 822  ALVQSVLTSIPTYYMQLNWLPSSI 845



 Score = 50.1 bits (118), Expect(3) = 3e-21
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = +3

Query: 327 ITRPKRVGGLGVRVARHHNTALLGKLTWDLTSSPNKL 437
           I +PK+ GGLG+R AR  NTA+LGKL WD+ S  +KL
Sbjct: 874 IAQPKKNGGLGIRSARESNTAMLGKLVWDIHSKKDKL 910



 Score = 48.5 bits (114), Expect(3) = 3e-21
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = +2

Query: 215 IRWFPQSICNQVDRVIRNFLWQGNREKGMHMVG 313
           + W P SIC+ +DR+ R FLW+G  ++G+H+VG
Sbjct: 838 LNWLPSSICDYMDRISRKFLWRGTNDRGIHLVG 870