BLASTX nr result
ID: Astragalus22_contig00034596
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Astragalus22_contig00034596
(1033 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera] 76 4e-24
gb|PNX66220.1| copia-type polyprotein, partial [Trifolium pratense] 73 6e-24
gb|KYP50278.1| Retrovirus-related Pol polyprotein from transposo... 80 4e-23
gb|PNX99782.1| copia-type polyprotein [Trifolium pratense] 77 1e-22
dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subt... 107 7e-22
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen... 103 2e-20
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen... 102 6e-20
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen... 97 2e-18
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense] 97 2e-18
gb|KYP44586.1| Retrovirus-related Pol polyprotein from transposo... 96 8e-18
ref|XP_017188308.1| PREDICTED: uncharacterized protein LOC108173... 92 6e-17
gb|PNY15642.1| copia-type polyprotein [Trifolium pratense] 92 9e-17
dbj|GAU41840.1| hypothetical protein TSUD_177510 [Trifolium subt... 92 2e-16
gb|PNX89974.1| copia-type polyprotein, partial [Trifolium pratense] 91 2e-16
gb|PNX95763.1| retrotransposon-related protein, partial [Trifoli... 87 6e-15
gb|PNX94698.1| copia-type polyprotein [Trifolium pratense] 87 9e-15
gb|PNX77752.1| copia-type polyprotein, partial [Trifolium pratense] 86 1e-14
gb|PNX91151.1| copia-type polyprotein, partial [Trifolium pratense] 85 2e-14
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense] 86 2e-14
gb|KYP37051.1| Retrovirus-related Pol polyprotein from transposo... 85 3e-14
>emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]
Length = 3048
Score = 76.3 bits (186), Expect(2) = 4e-24
Identities = 38/71 (53%), Positives = 46/71 (64%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTI+NMVR +LS KKLPK FW +AV W V V RSPT A+ AW
Sbjct: 613 QNGVAERKNRTIMNMVRSMLSAKKLPKTFWPEAVNWTVHVLNRSPTFAVQNKTPEEAWGK 672
Query: 414 LKSSVHFFQNF 446
LK SV +F+ F
Sbjct: 673 LKPSVDYFRVF 683
Score = 65.1 bits (157), Expect(2) = 4e-24
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
Frame = +1
Query: 433 FFRTFRCVAHLHVHGAQRKKLDNS--------VSEESKSYMLYDPIAKRILINRDVKFVR 588
+FR F C++H+HV ++R KLD+ VSEESK+Y LYDPI+++I+I+RDV F
Sbjct: 679 YFRVFGCLSHVHVPDSKRTKLDDKSFSCVLLGVSEESKAYRLYDPISQKIIISRDVVFEE 738
Query: 589 MKHGSGEKKAQIAKFRLLIW 648
K+ +KK + A L W
Sbjct: 739 DKNWDWDKKYEEAIVCDLEW 758
>gb|PNX66220.1| copia-type polyprotein, partial [Trifolium pratense]
Length = 268
Score = 73.2 bits (178), Expect(2) = 6e-24
Identities = 32/71 (45%), Positives = 46/71 (64%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRT+LN+VR ++ + +PK FW +A+KWA +V RSPT ++ AW G
Sbjct: 138 QNGVSERKNRTLLNIVRSMIHARSVPKRFWPEAIKWATYVMNRSPTLSVKDMTPEEAWSG 197
Query: 414 LKSSVHFFQNF 446
K SVH F+ F
Sbjct: 198 RKPSVHHFKVF 208
Score = 67.4 bits (163), Expect(2) = 6e-24
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 8/61 (13%)
Frame = +1
Query: 436 FRTFRCVAHLHVHGAQRKKLDNS--------VSEESKSYMLYDPIAKRILINRDVKFVRM 591
F+ F CVAH+H+H +QRKKLD+ VSEESK+Y LYDPI +I+I+RDV F
Sbjct: 205 FKVFGCVAHVHIHDSQRKKLDDKSKKCILLGVSEESKAYKLYDPIENKIIISRDVIFEES 264
Query: 592 K 594
K
Sbjct: 265 K 265
>gb|KYP50278.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 180
Score = 79.7 bits (195), Expect(2) = 4e-23
Identities = 37/71 (52%), Positives = 47/71 (66%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTI+N+VR +LSEKKLPK FW +AV W +V RSPT A+ AW G
Sbjct: 39 QNGVAERKNRTIMNLVRTLLSEKKLPKSFWPEAVNWVAYVLNRSPTLAVKNQMPEEAWSG 98
Query: 414 LKSSVHFFQNF 446
+K SV F+ F
Sbjct: 99 VKPSVEHFRVF 109
Score = 58.2 bits (139), Expect(2) = 4e-23
Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 8/57 (14%)
Frame = +1
Query: 436 FRTFRCVAHLHVHGAQRKKLDNS--------VSEESKSYMLYDPIAKRILINRDVKF 582
FR F CV H+HV A+R KL+N +SEESK Y LY+PI ++I+I+RDV F
Sbjct: 106 FRVFGCVTHVHVPDARRTKLENKSCKCVLLGMSEESKGYRLYNPITRKIVISRDVVF 162
>gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]
Length = 912
Score = 76.6 bits (187), Expect(2) = 1e-22
Identities = 34/71 (47%), Positives = 47/71 (66%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRT+LNMVR ++S + +PK+FW +A KWA +V R PT A+ AW G
Sbjct: 582 QNGVSERKNRTVLNMVRSMISARSVPKKFWPEAAKWATYVMNRCPTHAVKNVTPEEAWSG 641
Query: 414 LKSSVHFFQNF 446
+K SVH F+ F
Sbjct: 642 IKPSVHHFRVF 652
Score = 59.3 bits (142), Expect(2) = 1e-22
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 8/68 (11%)
Frame = +1
Query: 436 FRTFRCVAHLHVHGAQRKKLDNS--------VSEESKSYMLYDPIAKRILINRDVKFVRM 591
FR F C+AH H+ RKKLDN VSEESK+Y LY+PI ++I+++R V F +
Sbjct: 649 FRVFGCLAHAHIPDVHRKKLDNKSIACVFLGVSEESKAYKLYNPIERKIIVSRVVVFEEL 708
Query: 592 KHGSGEKK 615
K + K+
Sbjct: 709 KGWNWNKQ 716
>dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subterraneum]
Length = 1608
Score = 107 bits (268), Expect = 7e-22
Identities = 93/315 (29%), Positives = 148/315 (46%), Gaps = 21/315 (6%)
Frame = +3
Query: 150 GGEQLWAKVE---RNQGVHLCHIFLLPYGGIQKRLVERENRTILNMVRCILSEKKLPKEF 320
GGE + + E ++QG+ C Y Q + ER+NRTI+N VR +L+E+++P+ F
Sbjct: 566 GGEFISNEFEEFCKDQGI--CRQLTASYTPQQNGVAERKNRTIMNAVRAVLNERQVPRVF 623
Query: 321 WSDAVKWAVFVEKRSPTTALHXXXXXXAWCGLKSSVHFFQNF*VCSSSPRTWCTKKEARQ 500
W +AVKW V V+ RSPT+A+ AW G++ SV +F+ F C + K+
Sbjct: 624 WPEAVKWCVHVQNRSPTSAVDHITPEEAWTGVRPSVDYFRIF-GCVAHAHVPDQKRSKLD 682
Query: 501 *CQ*RVKIL--------YAL*SYC-KKDLDQQGCKICEDETWKWREEGSNSKIQVADLEE 653
R L Y L KK + + ED++W W K+ V D EE
Sbjct: 683 DKSKRCVFLGVSDESKAYKLFDPIEKKVIVNRDVVFEEDKSWDWGRTEEECKVDVLDWEE 742
Query: 654 KEEEGSVVGTSAGNQTRNAGANVQEQNASANEN---TNEDSLVEQGRALVEGRIKRKPAY 824
EE+G GT+ + + N +S N+ TNE + VEQ R +R+P +
Sbjct: 743 NEEDGEDHGTAQNEEENSGDINQGASPSSLNKTGSPTNETNDVEQEFLERAARSRRRPGW 802
Query: 825 L----QDMSLSK*SWMSSNT*KTLALLWSLKQKILSPLRML*EVKNGK--KAIDLEIEAI 986
L +D +LS+ + ++ + P K+ K +A+++E++AI
Sbjct: 803 LVDFEEDPNLSE---------EESLMVMMTAENGSDPYLFEEAFKSAKWREAMNMEMKAI 853
Query: 987 EKLKRHMGTDNLPKG 1031
EK K + TD P+G
Sbjct: 854 EKNKTWVLTD-APRG 867
>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1302
Score = 103 bits (257), Expect = 2e-20
Identities = 79/266 (29%), Positives = 119/266 (44%), Gaps = 13/266 (4%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTI+NMVR +LSEK++PK FW +AV W++ + RSPT A+ AW G
Sbjct: 590 QNGVAERKNRTIMNMVRSMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEAWSG 649
Query: 414 LKSSVHFFQNF*VCSSSPRTWCTKKEARQ*CQ*RVKILYAL*SYCKKDLDQQGCKIC--- 584
+K VH+F+ F + +K+ V + + S + D +I
Sbjct: 650 IKPVVHYFKVFGCIAHVHIPEAKRKKLDNKSYKCVLLGVSEESKAYRLYDPISERIVVSR 709
Query: 585 -----EDETWKWREEGSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQN---AS 740
EDE+W+W ++ V D + EEE N A +E+N S
Sbjct: 710 DVVFEEDESWEWGRTAEEVRLDVLDWSDGEEE------------ENESAQSEEENEYAQS 757
Query: 741 ANENTNEDSLVEQGRALVEGRIKRKPAYLQDMSLSK*SWMSSNT*KTLALLWSLKQKILS 920
EN N D E+ L EGR + +P ++QD + T + + +
Sbjct: 758 EEENVNNDDAEEEEEILEEGRTRMQPVWMQDYVSGEGLSEEEETNNVV-----MFTSVTD 812
Query: 921 PLRML*EVKNG--KKAIDLEIEAIEK 992
P K+ K A+D EIEAIE+
Sbjct: 813 PATFEEAFKSAKWKAAMDQEIEAIER 838
>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1044
Score = 102 bits (253), Expect = 6e-20
Identities = 77/263 (29%), Positives = 124/263 (47%), Gaps = 10/263 (3%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTI+NMVR +LSEK++PK FW +AV W++ + RSPT A+ AW G
Sbjct: 311 QNGVAERKNRTIMNMVRSMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEAWSG 370
Query: 414 LKSSVHFFQNF*VCSSSPRTWCTKKEARQ*CQ*RVKILYAL*SYCKKDLDQQGCKIC--- 584
+K +VH+F+ F + +K+ V + + S + D +I
Sbjct: 371 IKPAVHYFRVFGCIAHVHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPISERIVVSR 430
Query: 585 -----EDETWKWREEGSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQNASANE 749
EDE W W ++ V D + EEE + SA ++ N A +E+N + N+
Sbjct: 431 DVVFEEDENWDWGRTAEEVRLDVLDWSDGEEEEN---ESAQSEEENEFAQSEEENVN-ND 486
Query: 750 NTNEDSLVEQGRALVEGRIKRKPAYLQDMSLSK*SWMSSNT*KTLALLWSLKQKILSPLR 929
+ E+ ++E EGR + +P ++QD + T + + + P
Sbjct: 487 DAEEEEILE------EGRTRMQPVWMQDYVSGEGLSEEEETNNIVMFTY-----VTDPTT 535
Query: 930 ML*EVKNG--KKAIDLEIEAIEK 992
K+ K A+D EIEAIE+
Sbjct: 536 FEEAFKSAKWKAAMDQEIEAIER 558
>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1316
Score = 97.4 bits (241), Expect = 2e-18
Identities = 76/263 (28%), Positives = 121/263 (46%), Gaps = 10/263 (3%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTI+NMVR +LSEK++PK FW +AV W++ + RSPT A+ AW G
Sbjct: 592 QNGVAERKNRTIMNMVRSMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEAWSG 651
Query: 414 LKSSVHFFQNF*VCSSSPRTWCTKKEARQ*CQ*RVKILYAL*SYCKKDLDQQGCKIC--- 584
+K +VH+F+ F + +K+ V + + S + D +I
Sbjct: 652 IKPAVHYFRVFGCIAHVHIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPISERIVVSR 711
Query: 585 -----EDETWKWREEGSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQNASANE 749
EDE+W W ++ V D + EEE N A +E+N + N+
Sbjct: 712 DVVFEEDESWDWGRTAEEERLDVLDWSDGEEE------------ENESAQSEEENVN-ND 758
Query: 750 NTNEDSLVEQGRALVEGRIKRKPAYLQDMSLSK*SWMSSNT*KTLALLWSLKQKILSPLR 929
+ E+ ++E EGR + +P ++QD +S + + S + P
Sbjct: 759 DAEEEEILE------EGRTRLQPIWMQDY-VSGEGLSEEEETNNIVMFTS----VTDPTT 807
Query: 930 ML*EVKNG--KKAIDLEIEAIEK 992
K+ K A+D EIEAIE+
Sbjct: 808 FEEAFKSAKWKAAMDQEIEAIER 830
>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
Length = 1347
Score = 97.4 bits (241), Expect = 2e-18
Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 21/221 (9%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTI+NMVR +L EKK+PK FW +AVKW+V + R PT A+ AW G
Sbjct: 593 QNGVAERKNRTIMNMVRSMLVEKKVPKMFWPEAVKWSVHILNRCPTLAVQNKTPEEAWSG 652
Query: 414 LKSSVHFFQNF*VCSSSPRTWCTKKEARQ*CQ*RVKIL--------YAL*S-YCKKDLDQ 566
+K ++++F+ F C + K+ + +L Y L KK +
Sbjct: 653 IKPTINYFRVF-GCVAHAHIPDQKRSKLDDKSKKCVLLGVSDESKAYKLYDPVSKKIIIS 711
Query: 567 QGCKICEDETWKWREEGSNSKIQVA--------DLEEKEEEGSVVGTSAGNQTRN----A 710
+ ED W W ++ V D+EE E VG + + N
Sbjct: 712 KDVIFEEDVCWNWDNNKDERRVDVLEWKNDYENDIEEAIEGNEEVGNNGNEEEHNNGNEG 771
Query: 711 GANVQEQNASANENTNEDSLVEQGRALVEGRIKRKPAYLQD 833
G N N+ + +++ +S ++ +VEGR++R P+YL D
Sbjct: 772 GNNDDTTNSIESNSSSSESHEDESPNMVEGRVRRPPSYLAD 812
>gb|KYP44586.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 783
Score = 95.5 bits (236), Expect = 8e-18
Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 10/210 (4%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+N+TI+NMVR +L EK +PK FW +AV WAV V RSPT A+ AW G
Sbjct: 36 QNGVAERKNQTIINMVRSVLGEKGVPKAFWPEAVMWAVHVLNRSPTLAVKDITPEEAWSG 95
Query: 414 LKSSVHFFQNF*VCS-----SSPRTWCTKKEARQ*C-----Q*RVKILYAL*SYCKKDLD 563
+K SV +F+ F + R+ K + C K KK L
Sbjct: 96 IKPSVSYFRIFGCIGYAYVHNQQRSKLDDKSTK--CVLLGVSEESKAYKLYDPVKKKILI 153
Query: 564 QQGCKICEDETWKWREEGSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQNASA 743
+ K ED W W E ++S + +L EE V +++ + A ++
Sbjct: 154 SRDVKFQEDAAWDWSEAKNSSILDTGELNPLEESSQVAEEKTQDKSNDTAATSSATTTNS 213
Query: 744 NENTNEDSLVEQGRALVEGRIKRKPAYLQD 833
+ N + S+ + +GR +R P +++D
Sbjct: 214 SSNVPDYSVPAASESHDQGRTRRPPTWMRD 243
>ref|XP_017188308.1| PREDICTED: uncharacterized protein LOC108173558 [Malus domestica]
Length = 497
Score = 92.4 bits (228), Expect = 6e-17
Identities = 74/214 (34%), Positives = 107/214 (50%), Gaps = 14/214 (6%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTI+NMVR +L EKK+PK FW +AV W V V RSPT A+ AW G
Sbjct: 285 QNGVAERKNRTIMNMVRSMLIEKKIPKTFWPEAVNWTVHVLNRSPTIAVKSKTPEEAWQG 344
Query: 414 LKSSVHFFQNF*VCS--SSPRTWCTKKEARQ*CQ*RVKILY---AL*SYCKKDLDQQGCK 578
LK SV F+ F S P K EA+ +K ++ + S + D K
Sbjct: 345 LKPSVEHFRVFGCISHVHIPDNKRVKLEAKS-----LKCIFLGVSDESKAYRLFDPISSK 399
Query: 579 IC--------EDETWKWREEGSNSKIQVADLE-EKEEEGSVVGTSAGNQTRNAGANVQEQ 731
I ED+ W W E + + +ADLE E EE S + N + A ++E
Sbjct: 400 IIVSRDVVFEEDQEWSWDE--VHKQTILADLEWEVNEEASTEEENNENGSETA-EELEEH 456
Query: 732 NASANENTNEDSLVEQGRALVEGRIKRKPAYLQD 833
++++ + ED+ +L EGR +R PA+++D
Sbjct: 457 GSNSSGSFEEDT--SNVTSLPEGRTRRPPAWMRD 488
>gb|PNY15642.1| copia-type polyprotein [Trifolium pratense]
Length = 822
Score = 92.4 bits (228), Expect = 9e-17
Identities = 89/282 (31%), Positives = 132/282 (46%), Gaps = 16/282 (5%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTILNMVR +L+ +++PK FW +AVKWA +V RSPT A+ AW G
Sbjct: 80 QNGVSERKNRTILNMVRSMLAAREVPKNFWPEAVKWATYVMNRSPTFAVQDMTPEEAWSG 139
Query: 414 LKSSVHFFQNF*VCS--SSPRTWCTKKEARQ*CQ*RVKIL----------YAL*SYCKKD 557
+K SVH F+ F + P K + + VK + Y L + +K
Sbjct: 140 VKPSVHHFRVFGCLAHVHVPDVQRKKLDGKS-----VKCIHLGLSEESKAYKLYNPNEKK 194
Query: 558 LDQQGCKICEDET-WKWREEGSNSKI---QVADLEEKEEEGSVVGTSAGNQTRNAGANVQ 725
+ I E++ W W+++ S I +D E +E V GNQ+ +A ++
Sbjct: 195 IIVSRDVIFEEQKGWNWKKKNYKSPIIHDTESDSEVAAQENHPVAPE-GNQSDDAEIDMD 253
Query: 726 EQNASANENTNEDSLVEQGRALVEGRIKRKPAYLQDMSLSK*SWMSSNT*KTLALLWSLK 905
Q A++ NEDS + G L R +R P YL+D + N + AL S +
Sbjct: 254 TQ---ASDTENEDSDNDNGNNL-PPRTRRPPGYLEDYDTTT-GEEQENMIQHFALFSSKE 308
Query: 906 QKILSPLRML*EVKNGKKAIDLEIEAIEKLKRHMGTDNLPKG 1031
++ KKA++ EIE+I K T LPKG
Sbjct: 309 DP--ESYEDAIKIDVWKKAMESEIESINKNDTWELT-TLPKG 347
>dbj|GAU41840.1| hypothetical protein TSUD_177510 [Trifolium subterraneum]
Length = 936
Score = 91.7 bits (226), Expect = 2e-16
Identities = 85/292 (29%), Positives = 139/292 (47%), Gaps = 17/292 (5%)
Frame = +3
Query: 207 IFLLP-YGGIQKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALH 383
++ +P Y Q + ER+NRTIL+MVR ++S + +PK FW AV WA +V+ RSPT +
Sbjct: 350 VYYIPAYTPQQNGVSERKNRTILDMVRSLISARNVPKRFWPGAVNWATYVKNRSPTHVVQ 409
Query: 384 XXXXXXAWCGLKSSVHFFQNF*VCS--SSPRTWCTKKEARQ*CQ*RVKILYAL*SYC--- 548
AW G+K SVH F+ F + P K + + + + +Y
Sbjct: 410 DITLEEAWSGVKPSVHNFRIFGCVAHVHIPDVNRKKLDGKSIMCILLGVSEESKTYKLYN 469
Query: 549 ---KKDLDQQGCKICEDETWKW-REEGSNSKIQVADLEE---KEEEGSVVGTSAGNQTRN 707
KK + + E ++W W ++E S++K Q D+E+ ++ G + G+ T N
Sbjct: 470 PSEKKIIISRDVVFEESKSWNWNKQETSSAKGQTIDIEDNDANDDTGQIEAKVTGSNTDN 529
Query: 708 AGANVQEQNASANENTNEDSLVEQG--RALVEGRIKRKPAYLQDMSLSK*SWMSSNT*KT 881
++ ANE+ +D V ++ R +R P YL+D ++ + +
Sbjct: 530 TESH---DGNEANEDIQQDGHVSDSSDSEVLTPRTRRPPNYLRDYVTNQEQENEVDVMQN 586
Query: 882 LALLWSLKQKILSPLRML*EVKNG--KKAIDLEIEAIEKLKRHMGTDNLPKG 1031
A L+S K+ P VK+ KKA++ EIE I+K TD LP+G
Sbjct: 587 FA-LFSFKE---DPNSYEEAVKHDVWKKAMESEIEVIKKNDTWELTD-LPQG 633
>gb|PNX89974.1| copia-type polyprotein, partial [Trifolium pratense]
Length = 415
Score = 90.5 bits (223), Expect = 2e-16
Identities = 82/276 (29%), Positives = 118/276 (42%), Gaps = 10/276 (3%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+N+TI+NMVRC+LSEK LPK W +AV WAV + RSPT A+ AW
Sbjct: 47 QNGVAERKNQTIMNMVRCMLSEKHLPKFLWGEAVNWAVHILNRSPTLAVKDKTPEEAWSD 106
Query: 414 LKSSVHFFQNF*VCS--SSPRTWCTKKEARQ*CQ*RVKILYAL*SY------CKKDLDQQ 569
+K +VH+ + F + P K +A+ + I +Y K+ + +
Sbjct: 107 IKPAVHYLKVFGCVAHVHIPEAKRKKLDAKSFRCVMLGISDESKAYRLFDPTTKRIVISK 166
Query: 570 GCKICEDETWKWREEGSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQNASANE 749
E+E W W K + D E EEE RN E E
Sbjct: 167 DVIFEENECWDWERSPEQMKPDLLDWGESEEE------------RN------ENTEEVRE 208
Query: 750 NTNEDSLVEQGRALVEGRIKRKPAYLQDMSLSK*SWMSSNT*KTLALLWSLKQKILSPLR 929
S + A +EGR++R P ++QD + + S + L + P
Sbjct: 209 GMGSSSSLSSEEAPIEGRVRRPPGWMQDYTSGE--EFSEEEIQNLVMFTVAS----DPTT 262
Query: 930 ML*EVKNGK--KAIDLEIEAIEKLKRHMGTDNLPKG 1031
VK+ K A++ E+EAIEK TD LP G
Sbjct: 263 FEEAVKSEKWRNAMNNEMEAIEKNNTWELTD-LPTG 297
>gb|PNX95763.1| retrotransposon-related protein, partial [Trifolium pratense]
Length = 1327
Score = 87.0 bits (214), Expect = 6e-15
Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 8/208 (3%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTI+NMVR +LSEK++PKEFW++A W++ + R PTTAL AW G
Sbjct: 591 QNGVAERKNRTIMNMVRSMLSEKQMPKEFWAEAANWSIHILNRCPTTALENMTPQEAWTG 650
Query: 414 LKSSVHFFQNF*VCS--SSPRTWCTKKEARQ*CQ*RVKILYAL*SY------CKKDLDQQ 569
K V F+ F + P K + + + + +Y KK +
Sbjct: 651 CKPRVDHFRIFGCLAHVHVPDQKRIKLDDKSKTHIFLGVSKESKAYKLFDPITKKITISR 710
Query: 570 GCKICEDETWKWREEGSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQNASANE 749
K E+ WKW++ + V DLE+K + + + N +N Q +
Sbjct: 711 DVKFEENACWKWKQSKGEVQSDVLDLEDKNSDANKELELEEDSDSNNTSNTISQTGGNSS 770
Query: 750 NTNEDSLVEQGRALVEGRIKRKPAYLQD 833
T+ GR +R P ++ D
Sbjct: 771 TTSSGGSEPNSPT---GRFRRAPGWMSD 795
>gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]
Length = 1324
Score = 86.7 bits (213), Expect = 9e-15
Identities = 66/214 (30%), Positives = 100/214 (46%), Gaps = 14/214 (6%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRT+LNMVR +L+ + +PK+FW +AVKWA +V RSPT ++ AW G
Sbjct: 589 QNGVSERKNRTLLNMVRSMLAGRNVPKKFWPEAVKWATYVLNRSPTLSVKDSTPEEAWSG 648
Query: 414 LKSSVHFFQNF*VCS--SSPRTWCTKKEARQ*CQ*RVKILYAL*SY------CKKDLDQQ 569
LK SVH F+ F + P TK +A+ + + +Y KK + +
Sbjct: 649 LKPSVHHFKIFGCLAYVHVPDAKRTKLDAKSLKCVHLGVSEESKAYKLYDPVNKKIIVSR 708
Query: 570 GCKICEDETWKWREE------GSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQ 731
E W W ++ SN+ ++D + EEE G + GN N ++ +
Sbjct: 709 DVVFEEGTEWNWNDKKKAAASSSNNNDLISDETDIEEEAK-NGVNTGN---NESSSEYDS 764
Query: 732 NASANENTNEDSLVEQGRALVEGRIKRKPAYLQD 833
N+ E+ L R K+KP YL D
Sbjct: 765 EQEGNDYETEEEL--------PPRPKKKPGYLND 790
>gb|PNX77752.1| copia-type polyprotein, partial [Trifolium pratense]
Length = 736
Score = 86.3 bits (212), Expect = 1e-14
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 11/211 (5%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + E +NRTI+NMVRC+LSEK +PK FW +AV WA + RSPT A+ AW G
Sbjct: 358 QNGVSESKNRTIVNMVRCMLSEKNVPKNFWPEAVNWAAHILNRSPTFAVKDITPEEAWSG 417
Query: 414 LKSSVHFFQNF*VCS--SSPRTWCTKKEARQ*CQ*RVKI-----LYAL*SYCKKDLD-QQ 569
+K SV F+ F + P K + + + I Y L KK + +
Sbjct: 418 IKPSVSHFKVFGCIAYVHVPDNLRKKLDDKSTVCIHLGISEESKAYKLYDPIKKRIAVSK 477
Query: 570 GCKICEDETWKWRE---EGSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQNAS 740
K E + W W + E SN Q+ D ++ E + A N +N ++
Sbjct: 478 DVKFDESKQWNWNDKNTENSNKNKQIIDCDDIETPSTSNQNEASNDAEEQASNSHSEDMD 537
Query: 741 ANENTNEDSLVEQGRALVEGRIKRKPAYLQD 833
+E+ L + R+ ++P YL D
Sbjct: 538 LVVTDSEEEDGNDENPLGK-RVSKRPDYLND 567
>gb|PNX91151.1| copia-type polyprotein, partial [Trifolium pratense]
Length = 430
Score = 84.7 bits (208), Expect = 2e-14
Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 8/208 (3%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTI+NMVRC+LS+KK+PK+FW ++VKWAV+V RSPT + AW
Sbjct: 193 QNGVSERKNRTIMNMVRCMLSDKKVPKKFWPESVKWAVYVLNRSPTLLVKDITPEEAWSN 252
Query: 414 LKSSVHFFQNF*VCSSSPRTWCTKKEARQ*CQ*RVKILYAL*SYCKKDLDQQGCKIC--- 584
+K SV F+ F + +K+ V + + S K + +I
Sbjct: 253 MKPSVKHFKVFGCLAFVHVPDAQRKKLDDKSIKCVHLGVSEESKAYKLYNPADRRIIVSR 312
Query: 585 -----EDETWKWREEGSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQNASANE 749
E + W W G NS+ Q + E E ++ AG NV+ +
Sbjct: 313 DVVFDESKGWNW---GENSQAQATQYDNSENE-----VYETDEEPAAGENVEADPQNITV 364
Query: 750 NTNEDSLVEQGRALVEGRIKRKPAYLQD 833
+E + + R+ R+P YL D
Sbjct: 365 PDSESDEQYESEEELPPRVIRRPGYLND 392
>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
Length = 1326
Score = 85.5 bits (210), Expect = 2e-14
Identities = 78/277 (28%), Positives = 130/277 (46%), Gaps = 11/277 (3%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRT++NMVR +L +K +PK FW +AV W ++V R PT A+ AW G
Sbjct: 589 QNGVAERKNRTVMNMVRSLLFDKNIPKTFWPEAVNWTIYVLNRCPTLAVKDVTPEEAWSG 648
Query: 414 LKSSVHFFQNF*VCS--SSPRTWCTKKEARQ*CQ*RVKILYAL*SY------CKKDLDQQ 569
+K SV+ F+ F + P TK ++R + + Y KK + +
Sbjct: 649 VKPSVNHFRVFGCIAHVHVPEAKRTKLDSRSITCVLLGVSEESKGYRFFDPVSKKIVVSR 708
Query: 570 GCKICEDETWKWREEGSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQNASANE 749
ED+ W W E+ + + ++ D E +E ++ N G NV+++ E
Sbjct: 709 DVIFEEDKQWDWEEKQTVADLEWNDGENEERVSENDNEERVSENDNQG-NVEKEREVIRE 767
Query: 750 NTNEDSLVEQGRALV-EGRIKRKPAYLQDMSLSK*SWMSSNT*KTLALLWSLKQKILSPL 926
++ + +G +V E R +R P ++ D + S +AL+ S + PL
Sbjct: 768 EEHDSN---EGEEIVKEYRERRPPGWMSDFESGE---GLSEDEAHMALMVS-----IDPL 816
Query: 927 RML*EVK--NGKKAIDLEIEAIEKLKRHMGTDNLPKG 1031
VK N + A++ EI++IEK + T+ LP G
Sbjct: 817 CFEEAVKSENWRLAMEKEIKSIEKNQTWTLTE-LPAG 852
>gb|KYP37051.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1079
Score = 85.1 bits (209), Expect = 3e-14
Identities = 68/261 (26%), Positives = 114/261 (43%), Gaps = 8/261 (3%)
Frame = +3
Query: 234 QKRLVERENRTILNMVRCILSEKKLPKEFWSDAVKWAVFVEKRSPTTALHXXXXXXAWCG 413
Q + ER+NRTI+N VR +L EK++ K FW + V+W V ++ RSPTTA+ W G
Sbjct: 572 QNGVAERKNRTIMNAVRAVLHEKQVSKSFWPEVVRWCVHIQNRSPTTAIDHGTLEEVWSG 631
Query: 414 LKSSVHFFQNF*VCS--SSPRTWCTKKEARQ------*CQ*RVKILYAL*SYCKKDLDQQ 569
+K V +F+ F + P +K + + K KK + +
Sbjct: 632 IKPRVDYFRTFGCVAHVHIPDQRRSKLDDKSHTCVLLGVSDEAKAYKLFDPISKKVIVSR 691
Query: 570 GCKICEDETWKWREEGSNSKIQVADLEEKEEEGSVVGTSAGNQTRNAGANVQEQNASANE 749
ED+ W W + + S D+E ++EEGS S G+N +
Sbjct: 692 DVVFEEDKGWNWHKGTTESTPLALDMEGQDEEGSDDVDSTPQLVATRGSNNNSEPPEPVS 751
Query: 750 NTNEDSLVEQGRALVEGRIKRKPAYLQDMSLSK*SWMSSNT*KTLALLWSLKQKILSPLR 929
N+ +GRA R +R+P ++ D + + + LA+L + +
Sbjct: 752 NSESIVPPVEGRAT---RTQRQPLWMTDYETN----LFAEEESLLAML-TTNSEDPQTFE 803
Query: 930 ML*EVKNGKKAIDLEIEAIEK 992
+ K+A+D E++AIE+
Sbjct: 804 EASTSQKWKEAMDTEMKAIER 824