BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00034370
         (453 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP40819.1| Retrovirus-related Pol polyprotein from transposo...   212   5e-63
gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposo...   208   3e-62
gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]   183   5e-51
gb|PNY15318.1| copia-type polyprotein, partial [Trifolium pratense]   184   7e-51
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   184   7e-51
dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subt...   183   1e-50
dbj|GAU36545.1| hypothetical protein TSUD_277510 [Trifolium subt...   182   3e-50
dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subt...   181   4e-50
gb|PKU61775.1| Retrovirus-related Pol polyprotein from transposo...   170   5e-50
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   180   1e-49
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   180   2e-49
gb|PNX69528.1| copia-type polyprotein, partial [Trifolium pratense]   167   2e-49
gb|PKU79836.1| Retrovirus-related Pol polyprotein from transposo...   167   4e-49
dbj|GAU24969.1| hypothetical protein TSUD_312040 [Trifolium subt...   178   5e-49
gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]            178   5e-49
gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   174   9e-49
gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]   177   1e-48
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   177   1e-48
gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]            177   1e-48
dbj|GAU14528.1| hypothetical protein TSUD_250700 [Trifolium subt...   173   1e-48

>gb|KYP40819.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 582

 Score =  212 bits (539), Expect = 5e-63
 Identities = 97/152 (63%), Positives = 122/152 (80%), Gaps = 2/152 (1%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKAFPIDT--SCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGL 175
           MTS MA NRMF +KA P+ T  +C+Q S  D TE+WHKR+GHL Y GL+LL QK MV+GL
Sbjct: 390 MTSYMANNRMFPIKAKPVITEAACIQTSNVDSTEMWHKRYGHLSYGGLKLLNQKAMVKGL 449

Query: 176 PELPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISF 355
           PEL + +KVCPEC  GKQ R+ +SKQ+ WR +R+LELIHSD+CGP TP SNS  RYFI+F
Sbjct: 450 PELKEMDKVCPECAVGKQHRDAISKQSTWRATRRLELIHSDICGPSTPTSNSNRRYFITF 509

Query: 356 IDDYSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           IDD+S+K WV+FL EK+ AF+TFK+FR+M+EK
Sbjct: 510 IDDFSRKTWVFFLCEKAEAFETFKRFRLMVEK 541


>gb|KYP35468.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 508

 Score =  208 bits (529), Expect = 3e-62
 Identities = 96/152 (63%), Positives = 121/152 (79%), Gaps = 2/152 (1%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKAFPIDT--SCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGL 175
           MTS MA NRMF +KA  + T  +C+Q S  D TE+WHKR+GHL Y GL+LL QK MV+GL
Sbjct: 61  MTSYMANNRMFPIKAKLVITEAACIQTSNVDSTEMWHKRYGHLSYGGLKLLNQKAMVKGL 120

Query: 176 PELPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISF 355
           PEL + +KVCPEC  GKQ R+ +SKQ+ WR +R+LELIHSD+CGP TP SNS  RYFI+F
Sbjct: 121 PELKEMDKVCPECAVGKQHRDAISKQSTWRATRRLELIHSDICGPSTPTSNSNRRYFITF 180

Query: 356 IDDYSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           IDD+S+K WV+FL EK+ AF+TFK+FR+M+EK
Sbjct: 181 IDDFSRKTWVFFLCEKAEAFETFKRFRLMVEK 212


>gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 803

 Score =  183 bits (464), Expect = 5e-51
 Identities = 83/149 (55%), Positives = 108/149 (72%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPE 181
           +++ M  NRM+ V+A  I  +CLQ +  + TELWHKR+ HL  KGLR+L +K MV+GLPE
Sbjct: 155 LSTEMTMNRMYIVRATVIIPNCLQVTKAEETELWHKRYAHLSIKGLRVLNKKHMVKGLPE 214

Query: 182 LPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFID 361
           L DTE+ C +C +GKQ RE M KQ NWR S  LELIHSD+CGPITP+SN   RYF++F D
Sbjct: 215 LRDTEEKCTDCLSGKQHRENMPKQANWRASEILELIHSDICGPITPKSNGGNRYFLTFTD 274

Query: 362 DYSKKGWVYFLSEKSVAFDTFKKFRMMIE 448
           D+S+K W Y + EKS A   FKKF+ ++E
Sbjct: 275 DFSRKTWTYIIQEKSCALSVFKKFKSLVE 303


>gb|PNY15318.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1064

 Score =  184 bits (466), Expect = 7e-51
 Identities = 81/149 (54%), Positives = 110/149 (73%)
 Frame = +2

Query: 5   TSAMAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPEL 184
           TS M+KNRM+ + A  I   CL+ + ++ T+LWH R+GHL +KGL  L ++ +V+GLPEL
Sbjct: 372 TSHMSKNRMYVITAPVIMPMCLKTAKQESTQLWHDRYGHLSFKGLNTLSKRQIVKGLPEL 431

Query: 185 PDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFIDD 364
            DTE+ C +C TGKQ R+ + KQ NWR S KLELIHSD+CGPI+P+SN   RYF++F DD
Sbjct: 432 EDTEENCTDCLTGKQHRDTIPKQANWRASVKLELIHSDICGPISPQSNGGCRYFMTFTDD 491

Query: 365 YSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           +S+K W Y L EKS AF+ FK F+ ++EK
Sbjct: 492 FSRKTWCYMLKEKSAAFEAFKNFKALVEK 520


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  184 bits (466), Expect = 7e-51
 Identities = 82/150 (54%), Positives = 110/150 (73%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPE 181
           M + M+ NRM+ + A  I   CL+    D  ELWH R+GHL +KGL  L +KDMVRGLP+
Sbjct: 390 MATKMSANRMYIIYAPVIIPMCLKTVKMDNNELWHCRYGHLSFKGLNTLVKKDMVRGLPQ 449

Query: 182 LPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFID 361
           L +T + C  C TGKQ RE + K +NWR S+KLEL+HSD+CGPITP+SN  +RYF++F D
Sbjct: 450 LQETTENCTNCMTGKQHREAIPKSSNWRASKKLELVHSDICGPITPQSNGGIRYFMTFTD 509

Query: 362 DYSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           D+S+K W Y LS+K+ AFD FKKF++++EK
Sbjct: 510 DFSRKTWTYLLSDKASAFDVFKKFKVLVEK 539


>dbj|GAU42405.1| hypothetical protein TSUD_324600 [Trifolium subterraneum]
          Length = 1302

 Score =  183 bits (464), Expect = 1e-50
 Identities = 86/150 (57%), Positives = 112/150 (74%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPE 181
           M S MA N++F + A      CLQA+ EDIT+LWH R+GHL  KGL+ L+QK+MV GLP+
Sbjct: 393 MCSQMASNKLFPIMA-EAKQVCLQANTEDITQLWHCRYGHLNIKGLQNLQQKNMVIGLPK 451

Query: 182 LPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFID 361
             ++  VC +C  GKQ RE + K +NW+ S++LELIHSD+CGPITP SNS  RY ++FID
Sbjct: 452 FEESNHVCADCLRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFID 511

Query: 362 DYSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           DYS+K WVY+LS KS AF+ FKKF+ M+EK
Sbjct: 512 DYSRKIWVYYLSNKSDAFECFKKFKCMVEK 541


>dbj|GAU36545.1| hypothetical protein TSUD_277510 [Trifolium subterraneum]
          Length = 1139

 Score =  182 bits (461), Expect = 3e-50
 Identities = 82/146 (56%), Positives = 105/146 (71%)
 Frame = +2

Query: 14  MAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPELPDT 193
           M+ N+M+ +KA  +   CLQAS ED ++LWH R+GHL  KGL  L + DMVRGLP+L D 
Sbjct: 354 MSANKMYVIKALVVIPKCLQASKEDTSQLWHMRYGHLSIKGLNTLVKMDMVRGLPDLEDF 413

Query: 194 EKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFIDDYSK 373
            + C +C TGKQ RE + KQ  WR S KL+L+HSD+CGPI P SN   RYFI+F DD ++
Sbjct: 414 SEKCIDCLTGKQHREVIPKQAKWRASVKLDLVHSDICGPINPTSNGGNRYFITFTDDLTR 473

Query: 374 KGWVYFLSEKSVAFDTFKKFRMMIEK 451
           K WVYFL EKS AFDTF  F++++EK
Sbjct: 474 KTWVYFLKEKSSAFDTFNNFKILVEK 499


>dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  181 bits (460), Expect = 4e-50
 Identities = 85/150 (56%), Positives = 111/150 (74%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPE 181
           M S MA N++F + A      CLQA+ EDIT+LWH R+GHL  KGL+ L+QK+MV GLP+
Sbjct: 393 MCSQMASNKLFPIMA-EAKQVCLQANIEDITQLWHCRYGHLNIKGLQNLQQKNMVIGLPK 451

Query: 182 LPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFID 361
             ++  VC +C  GKQ RE + K +NW+ S++LELIHSD+CGPITP SNS  RY ++FID
Sbjct: 452 FEESNHVCADCLRGKQHRESIPKTSNWKSSKRLELIHSDICGPITPVSNSNKRYVLTFID 511

Query: 362 DYSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           DYS+K W Y+LS KS AF+ FKKF+ M+EK
Sbjct: 512 DYSRKIWAYYLSNKSDAFECFKKFKCMVEK 541


>gb|PKU61775.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 267

 Score =  170 bits (430), Expect = 5e-50
 Identities = 81/146 (55%), Positives = 98/146 (67%)
 Frame = +2

Query: 14  MAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPELPDT 193
           MAKNRM+ +    +   CLQ   ED   LWH RFGHL Y GL  L +K MV GLPE+  T
Sbjct: 95  MAKNRMYKINLVYVLEKCLQVDVEDKASLWHLRFGHLHYGGLHKLLKKKMVYGLPEVDYT 154

Query: 194 EKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFIDDYSK 373
            K+C +C  GK  R    K+  +R S  LEL+H+D+CGPITPES S  RYFI+FIDDYS+
Sbjct: 155 NKLCEDCIFGKHARNSFQKKEEYRASSILELVHTDICGPITPESFSDKRYFITFIDDYSR 214

Query: 374 KGWVYFLSEKSVAFDTFKKFRMMIEK 451
           K WVYFL EKS  F+ FKKF+ M+EK
Sbjct: 215 KTWVYFLKEKSETFNVFKKFKAMVEK 240


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  180 bits (457), Expect = 1e-49
 Identities = 83/152 (54%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKA--FPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGL 175
           M + M+ NRMF ++A   P  ++C Q   ED T LWH R+GHL +KGLR L+ + MV+GL
Sbjct: 117 MQTKMSANRMFVIRANMLPQASACFQTVSEDNTHLWHCRYGHLSFKGLRTLQYRKMVKGL 176

Query: 176 PELPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISF 355
           P+   + K+C +C  GKQ RE + K++ WR S +L+LIHSD+CGPI P SNS+ RY ISF
Sbjct: 177 PDFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSRKRYLISF 236

Query: 356 IDDYSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           IDDYS+K WVYFL EKS AF TFK F+ ++EK
Sbjct: 237 IDDYSRKTWVYFLYEKSQAFTTFKSFKCLVEK 268


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  180 bits (456), Expect = 2e-49
 Identities = 83/152 (54%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKA--FPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGL 175
           M + M+ NRMF ++A   P  ++C Q   ED T LWH R+GHL +KGLR L+ + MV+GL
Sbjct: 398 MQTKMSANRMFVIRANMLPQASACFQTVSEDNTHLWHCRYGHLSFKGLRSLQYRKMVKGL 457

Query: 176 PELPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISF 355
           P+   + K+C +C  GKQ RE + K++ WR S +L+LIHSD+CGPI P SNS+ RY ISF
Sbjct: 458 PDFKMSSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNSRKRYLISF 517

Query: 356 IDDYSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           IDDYS+K WVYFL EKS AF TFK F+ ++EK
Sbjct: 518 IDDYSRKTWVYFLYEKSQAFTTFKSFKCLVEK 549


>gb|PNX69528.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 223

 Score =  167 bits (423), Expect = 2e-49
 Identities = 76/145 (52%), Positives = 103/145 (71%)
 Frame = +2

Query: 14  MAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPELPDT 193
           M+ NRM+ +KA  +   C +A+  +  +LWH+R+GHL +KG+ +L  K MV+GLP + + 
Sbjct: 1   MSMNRMYIIKAPVLIPHCYKAAQSNDAQLWHQRYGHLSFKGINILALKKMVQGLPYVKEP 60

Query: 194 EKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFIDDYSK 373
           E+ C  C  GKQQRE M K++  R S KL+L+HSD+CGPI PESN K RYFI+FIDD S+
Sbjct: 61  EQKCDSCMKGKQQRESMPKKSLXRASEKLQLVHSDICGPINPESNGKKRYFITFIDDLSR 120

Query: 374 KGWVYFLSEKSVAFDTFKKFRMMIE 448
           K W YFLSE S AF  F+KF+ M+E
Sbjct: 121 KTWTYFLSENSEAFIAFQKFKAMVE 145


>gb|PKU79836.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 249

 Score =  167 bits (423), Expect = 4e-49
 Identities = 79/146 (54%), Positives = 97/146 (66%)
 Frame = +2

Query: 14  MAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPELPDT 193
           MAKNRM+ +    +   CLQ   ED   LWH RFGHL Y GL+ L +  MV  LPE+  T
Sbjct: 95  MAKNRMYKINLVYVREKCLQVDVEDKASLWHFRFGHLYYGGLQKLLKNKMVYRLPEVDYT 154

Query: 194 EKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFIDDYSK 373
            K+C +C  GK  R    K+  +R S  LEL+H+D+CGPITPES S  RYFI+FIDDYS+
Sbjct: 155 NKICEDCIFGKHARSSFQKKAEYRASHTLELVHTDICGPITPESFSGKRYFITFIDDYSR 214

Query: 374 KGWVYFLSEKSVAFDTFKKFRMMIEK 451
           K WVYFL EKS  F+ FKKF+ M+EK
Sbjct: 215 KTWVYFLKEKSETFNVFKKFKAMVEK 240


>dbj|GAU24969.1| hypothetical protein TSUD_312040 [Trifolium subterraneum]
          Length = 1326

 Score =  178 bits (452), Expect = 5e-49
 Identities = 81/148 (54%), Positives = 106/148 (71%)
 Frame = +2

Query: 5   TSAMAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPEL 184
           ++ M+ NRM+ + A  +   CLQ S ED T+LWH R+GHL  KGL+LL +KDMV+GLP L
Sbjct: 394 STPMSTNRMYIITAPVLVPMCLQTSIEDNTQLWHLRYGHLSIKGLKLLSKKDMVKGLPAL 453

Query: 185 PDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFIDD 364
            D ++ C +C  GKQQRE + KQ  WR + KL+LIHSD+CGPI P SN   RYF++F DD
Sbjct: 454 QDMDEKCIDCLNGKQQREAIPKQAKWRATTKLQLIHSDICGPINPSSNGGKRYFLTFTDD 513

Query: 365 YSKKGWVYFLSEKSVAFDTFKKFRMMIE 448
           +S+K WVY L EKS AF+ FK F+ M+E
Sbjct: 514 FSRKTWVYVLKEKSEAFEIFKIFKAMVE 541


>gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]
          Length = 1328

 Score =  178 bits (452), Expect = 5e-49
 Identities = 80/150 (53%), Positives = 109/150 (72%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPE 181
           M++ M+ NRMF +KA  +   CLQ + E  ++LWHKR+GHL YKGL  L +K+MVRGLP 
Sbjct: 397 MSTPMSANRMFVIKATVLVPMCLQTTNEIDSQLWHKRYGHLSYKGLNTLVKKEMVRGLPA 456

Query: 182 LPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFID 361
           L +   VC +C  GKQ RE + K+ NWR + KLELIHSD+CGPI P SNS  +YFI+F D
Sbjct: 457 LKEASDVCSDCLFGKQHREVIPKKVNWRATHKLELIHSDICGPINPASNSGNKYFITFTD 516

Query: 362 DYSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           D+++K WVY L +K+ AF++FK+F+ + EK
Sbjct: 517 DFTRKTWVYILQDKASAFESFKRFKAVAEK 546


>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  174 bits (440), Expect = 9e-49
 Identities = 80/149 (53%), Positives = 107/149 (71%), Gaps = 3/149 (2%)
 Frame = +2

Query: 14  MAKNRMFAVKAFPIDT--SCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPE-L 184
           M  NRMF + A       SC   S +D++ LWH+R+ HL +KGLR+L+ K MVRGLP  L
Sbjct: 94  MTTNRMFILFAQSATKKDSCFHISTQDLSSLWHRRYAHLSHKGLRILQSKGMVRGLPSSL 153

Query: 185 PDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFIDD 364
             TEKVC +C  GKQ R+P+ K++ WR  +KLELIH+D+CGPI P SNS+ RYF+ FIDD
Sbjct: 154 STTEKVCEDCMKGKQHRDPIPKKSQWRAKQKLELIHADICGPIIPSSNSQKRYFLCFIDD 213

Query: 365 YSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           Y++K W+YFL+EKS AF  F+ F+ ++EK
Sbjct: 214 YTRKAWIYFLTEKSEAFHYFQCFKNLVEK 242


>gb|PNX72392.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 886

 Score =  177 bits (449), Expect = 1e-48
 Identities = 80/150 (53%), Positives = 107/150 (71%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPE 181
           +TS M+ NRMF ++A  I   CL+ S +  + LWH R+ HL +KGL  L +KDMV+GLP 
Sbjct: 394 ITSDMSANRMFIIQASIISPMCLKISKDSQSHLWHCRYAHLSFKGLNTLVKKDMVKGLPT 453

Query: 182 LPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFID 361
           L +T++VC +C TGKQ RE + K  NWR S KL+L+HSD+CGPI P SN   RYFI+F D
Sbjct: 454 LQETDEVCSDCATGKQSREAIPKSNNWRASEKLQLVHSDICGPINPASNGGSRYFITFTD 513

Query: 362 DYSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           D+S+K W Y L+ KS AF+ FKKF+ ++EK
Sbjct: 514 DFSRKTWTYPLAAKSNAFEIFKKFKALVEK 543


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  177 bits (450), Expect = 1e-48
 Identities = 81/152 (53%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKA--FPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGL 175
           M + M+ NRMF + A   P  ++C Q   ED T LWH R+GHL +KGL+ L+ ++MV+GL
Sbjct: 396 MQTKMSANRMFVILANMLPQASACFQTVSEDNTHLWHCRYGHLSFKGLKTLQYRNMVKGL 455

Query: 176 PELPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISF 355
           P+     K+C +C  GKQ RE + K++ WR S +L+LIHSD+CGPI P SN++ RY ISF
Sbjct: 456 PDFKMPSKLCKDCMVGKQHRESIPKKSMWRASHRLQLIHSDICGPIKPLSNNRKRYLISF 515

Query: 356 IDDYSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           IDDYS+K WVYFL+EKS AF TFK F+ ++EK
Sbjct: 516 IDDYSRKTWVYFLNEKSQAFTTFKSFKCLVEK 547


>gb|PNX99782.1| copia-type polyprotein [Trifolium pratense]
          Length = 912

 Score =  177 bits (448), Expect = 1e-48
 Identities = 78/149 (52%), Positives = 108/149 (72%)
 Frame = +2

Query: 2   MTSAMAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPE 181
           +T+ M  N+M+ VKA  I  +CLQA+  + T LWH+R+ HL ++GL+ L  K MV+GLP 
Sbjct: 390 LTTKMTFNKMYIVKASMILPNCLQATALEETTLWHQRYAHLSFQGLKTLITKQMVKGLPN 449

Query: 182 LPDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFID 361
           L ++   C +C  GKQ R  + K+ NWR S+KLEL+HSD+CGPI P+SN   RYFI+FID
Sbjct: 450 LKESGDKCTDCLVGKQHRSSIPKEANWRASKKLELVHSDICGPINPQSNGGNRYFITFID 509

Query: 362 DYSKKGWVYFLSEKSVAFDTFKKFRMMIE 448
           D++KK W+YFL +KS AFD FKKF+ ++E
Sbjct: 510 DFTKKTWIYFLQKKSSAFDVFKKFKSLVE 538


>dbj|GAU14528.1| hypothetical protein TSUD_250700 [Trifolium subterraneum]
          Length = 539

 Score =  173 bits (438), Expect = 1e-48
 Identities = 78/149 (52%), Positives = 104/149 (69%)
 Frame = +2

Query: 5   TSAMAKNRMFAVKAFPIDTSCLQASCEDITELWHKRFGHLGYKGLRLLKQKDMVRGLPEL 184
           T+ M+ NRM+ V A  I   CLQ + +D ++LWH R+GHL  KGL  L +K+MV+GLP L
Sbjct: 339 TTQMSPNRMYVVNANVIMPKCLQVTKKDWSQLWHSRYGHLSIKGLNTLARKEMVKGLPPL 398

Query: 185 PDTEKVCPECQTGKQQREPMSKQTNWRVSRKLELIHSDLCGPITPESNSKMRYFISFIDD 364
            +  + C +C TGKQ R+ + KQ  WR   KLEL+HSD+CGP+ P SN    YFI+F DD
Sbjct: 399 EELNEHCVDCLTGKQHRDAIPKQAVWRAKLKLELVHSDICGPLNPISNGGNMYFITFTDD 458

Query: 365 YSKKGWVYFLSEKSVAFDTFKKFRMMIEK 451
           +S+K W+YFL EKS A DTFK F++M+EK
Sbjct: 459 FSRKTWIYFLKEKSSALDTFKMFKLMVEK 487