BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00033453
         (811 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|GAU19541.1| hypothetical protein TSUD_303540 [Trifolium subt...   162   8e-46
dbj|GAU50328.1| hypothetical protein TSUD_290640 [Trifolium subt...   162   3e-43
gb|PNX81608.1| ribonuclease H [Trifolium pratense]                    161   6e-42
gb|PNY15946.1| ribonuclease H, partial [Trifolium pratense]           149   8e-42
dbj|GAU43243.1| hypothetical protein TSUD_241340 [Trifolium subt...   142   1e-36
gb|PNX92362.1| ribonuclease H [Trifolium pratense] >gi|133525119...   141   2e-36
gb|PNX94788.1| ribonuclease H [Trifolium pratense]                    134   1e-35
gb|PNY05394.1| ribonuclease H [Trifolium pratense]                    144   2e-35
gb|PNX97265.1| ribonuclease H, partial [Trifolium pratense]           145   2e-35
gb|PNY12120.1| 3-ketoacyl-CoA synthase, partial [Trifolium prate...   142   4e-35
dbj|GAU51253.1| hypothetical protein TSUD_412460, partial [Trifo...   134   1e-34
gb|PNX68268.1| ribonuclease H, partial [Trifolium pratense]           132   2e-34
gb|PNY06537.1| ribonuclease H, partial [Trifolium pratense]           136   5e-34
dbj|GAU17272.1| hypothetical protein TSUD_109880 [Trifolium subt...   130   7e-34
dbj|GAU34105.1| hypothetical protein TSUD_256010 [Trifolium subt...   104   2e-33
gb|PNY10278.1| ribonuclease H [Trifolium pratense]                    134   3e-33
gb|PNY15498.1| ribonuclease H [Trifolium pratense]                    132   1e-32
gb|PNX88162.1| hypothetical protein L195_g044263 [Trifolium prat...   132   2e-32
gb|PNY00647.1| ribonuclease H [Trifolium pratense]                    130   2e-32
gb|PNY12420.1| ribonuclease H [Trifolium pratense]                    127   4e-32

>dbj|GAU19541.1| hypothetical protein TSUD_303540 [Trifolium subterraneum]
          Length = 642

 Score =  162 bits (411), Expect(2) = 8e-46
 Identities = 71/154 (46%), Positives = 100/154 (64%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           RL+TN RK+ MQL  P+C+HC ++VE  +HVLRDCPLA VVW N+L+   R  F++ NLE
Sbjct: 338 RLLTNYRKSKMQLCEPWCNHCIDIVEDTMHVLRDCPLAKVVWSNLLNDTARYSFYHTNLE 397

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
           DWI MN+  +LG +  + WS VWA  C++LW WRN+  H +  VRP   W  I+   +QY
Sbjct: 398 DWICMNLHKELGKETNVRWSCVWAVGCHVLWLWRNRECHGDMRVRPTQLWQTILYMVQQY 457

Query: 103 GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
                K +A+ V +K+E+ + W  P   W+KLN+
Sbjct: 458 KQADIKSIALPVHQKVEVPIGWNKPAGDWIKLNT 491



 Score = 50.4 bits (119), Expect(2) = 8e-46
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 20/65 (30%)
 Frame = -3

Query: 599 DLRIWPGNSQGQFSVSSA--------------------SLNVKQRIRQFIWLTRHDRLMT 480
           D R W G+S G F+++SA                     L V +R+R F+WL RHDRL+T
Sbjct: 282 DRRAWSGSSDGSFTIASAYTLLCRFNDEAWDTRWLHIWRLKVPERVRSFVWLVRHDRLLT 341

Query: 479 NQRKT 465
           N RK+
Sbjct: 342 NYRKS 346



 Score = 70.5 bits (171), Expect = 5e-10
 Identities = 35/57 (61%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = -3

Query: 809 KVHAVCWDVVSTPKYMGGLGIRRLSTMNKACLMKLGWELRCDSADL-CKVLRGKYAR 642
           K HAV WD V+ PK +GGLGIRRL  MNKACLMKLGW +R     L   V++GKY R
Sbjct: 114 KYHAVSWDNVTKPKALGGLGIRRLVHMNKACLMKLGWAIRSGQEALWIDVMKGKYVR 170


>dbj|GAU50328.1| hypothetical protein TSUD_290640 [Trifolium subterraneum]
          Length = 474

 Score =  162 bits (411), Expect = 3e-43
 Identities = 68/154 (44%), Positives = 98/154 (63%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           RL+TN RK+ M +G P+C HC ++VE  LHVLRDCPLA  VW N+L+   R+  F   L+
Sbjct: 221 RLLTNYRKSKMHIGEPWCTHCVDIVEDTLHVLRDCPLAKSVWCNLLNNAARENSFAAELK 280

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
           DWI+MN+   LG    + W  VWAT+C+ LW WRN+  H+E  +RP HPW +I++   QY
Sbjct: 281 DWIHMNLQQDLGRNMHMEWYGVWATSCHSLWTWRNRETHDETRLRPIHPWRYILDCHLQY 340

Query: 103 GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
                  +A+  +++ME+ + W+ P   WV LN+
Sbjct: 341 MAANVNNIALSTRQQMEVDIAWQQPEAGWVVLNT 374


>gb|PNX81608.1| ribonuclease H [Trifolium pratense]
          Length = 630

 Score =  161 bits (408), Expect = 6e-42
 Identities = 68/154 (44%), Positives = 102/154 (66%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           RL+TN RK+ M +  P+C+HC +VVE  LHVLRDCPLA  VW N+L+G  +D FF   L+
Sbjct: 322 RLLTNYRKSKMHISEPWCNHCVDVVEDTLHVLRDCPLAKSVWCNLLNGKDKDWFFTAALD 381

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
           +WI +NM  +LG  + L+W++VWAT+C+ LW WRN+  H +  +RP  PW  I++   QY
Sbjct: 382 EWIILNMKKQLGRDNNLSWASVWATSCHFLWLWRNRETHGDSRLRPLQPWKLILKWVMQY 441

Query: 103 GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
            +     + +  ++K+EI V W+ P + W+ LN+
Sbjct: 442 FEADVSGIVIANRQKVEITVTWQCPEDGWLSLNT 475



 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 34/57 (59%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
 Frame = -3

Query: 809 KVHAVCWDVVSTPKYMGGLGIRRLSTMNKACLMKLGWELRC-DSADLCKVLRGKYAR 642
           K HAV WD ++ PK  GGLGIRRL  MNKACLMKL W +R  + A    V+RGKY+R
Sbjct: 98  KYHAVSWDNITKPKAFGGLGIRRLVQMNKACLMKLAWSIRSGEEALWIDVIRGKYSR 154


>gb|PNY15946.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1195

 Score =  149 bits (377), Expect(2) = 8e-42
 Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 3/157 (1%)
 Frame = -1

Query: 463  RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
            R++TN RK+ M LG P+C+HC + +E +LH+LRDCPLA  +W N+L    R  FFN   +
Sbjct: 1031 RILTNYRKSKMNLGGPWCNHCVDEIEDVLHILRDCPLAKAIWCNVLRMEVRTTFFNLQHQ 1090

Query: 283  DWINMNMTSKLGLQD-ELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQ 107
            +WI  N+T +LG     + W+  WAT+C+MLW+WRN   H+  F+RP  PW  + + T  
Sbjct: 1091 EWITFNITKELGKDHVTVPWNAFWATSCHMLWKWRNSEEHDATFMRPVQPWKEVYKWTTY 1150

Query: 106  YGDYLDKQLAVGVKRKME--IQVCWKPPNNSWVKLNS 2
            Y + +  ++           + + WKPP N WV LN+
Sbjct: 1151 YMNAMQNKVMHNSNSTASVCVSIAWKPPINGWVCLNT 1187



 Score = 50.1 bits (118), Expect(2) = 8e-42
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 20/68 (29%)
 Frame = -3

Query: 608  DGTDLRIWPGNSQGQFSVSSASL--------------------NVKQRIRQFIWLTRHDR 489
            +G D R W G+  G+FSVSSA L                     V +RIR FIWL +H+R
Sbjct: 972  NGMDQRGWKGDKNGEFSVSSAYLMICNFTENFDDTIWAKIWRITVAERIRSFIWLVKHNR 1031

Query: 488  LMTNQRKT 465
            ++TN RK+
Sbjct: 1032 ILTNYRKS 1039



 Score = 77.0 bits (188), Expect = 4e-12
 Identities = 37/58 (63%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
 Frame = -3

Query: 809 KVHAVCWDVVSTPKYMGGLGIRRLSTMNKACLMKLGWEL-RCDSADLCKVLRGKYARD 639
           + HAV WD ++ PK +GGLGIRRL  MNKACLMKLGW + R DSA    VL+GKYAR+
Sbjct: 807 RYHAVSWDTITLPKSLGGLGIRRLHNMNKACLMKLGWSMKRGDSALWIDVLKGKYARE 864


>dbj|GAU43243.1| hypothetical protein TSUD_241340 [Trifolium subterraneum]
          Length = 371

 Score =  142 bits (359), Expect = 1e-36
 Identities = 61/154 (39%), Positives = 94/154 (61%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           RL+TN++K  M LG+  CD+C  ++E  LH LRDCP  + +W+N+++ + R  FFN +L 
Sbjct: 163 RLLTNEKKHKMGLGSAMCDYCGSIIEDTLHALRDCPQTMPIWLNLVNEHARANFFNGDLF 222

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
            WIN NM++ +G  + + W  +W  AC+ LW WRNK  HEE F RP +   H++ + + Y
Sbjct: 223 YWINYNMSNYMGKYNGVEWKIMWVVACHQLWFWRNKEKHEESFSRPSNAVLHVMNQVKYY 282

Query: 103 GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
            D   + + V    +  + V WK P + WVKLN+
Sbjct: 283 QDADCENVIVVSPTREVVMVGWKYPPSGWVKLNT 316


>gb|PNX92362.1| ribonuclease H [Trifolium pratense]
 gb|PNY10145.1| ribonuclease H [Trifolium pratense]
          Length = 339

 Score =  141 bits (356), Expect = 2e-36
 Identities = 63/144 (43%), Positives = 88/144 (61%), Gaps = 1/144 (0%)
 Frame = -1

Query: 433 MQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLEDWIN-MNMTS 257
           M+LG PYCDHC +  ESILHV+RDCP+A+  W ++LH N R  FF   L+     +N++ 
Sbjct: 69  MKLGEPYCDHCYQFEESILHVIRDCPIAVQTWQHLLH-NGRGNFFLAQLQRVDRGLNLSC 127

Query: 256 KLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQYGDYLDKQLA 77
           +LG   E  W ++WAT CY+LW WRNK + +E F+ P  P   ++E  + YGD +  +  
Sbjct: 128 QLGRNSEYGWDSIWATTCYLLWYWRNKRIQDENFISPIKPLEVVLEYVKTYGDSIALEQK 187

Query: 76  VGVKRKMEIQVCWKPPNNSWVKLN 5
               RK ++QV WK P N W  LN
Sbjct: 188 AQSGRKTQVQVAWKGPPNGWCALN 211


>gb|PNX94788.1| ribonuclease H [Trifolium pratense]
          Length = 509

 Score =  134 bits (337), Expect(2) = 1e-35
 Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 1/155 (0%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           RLMT  R    Q+G  YCD C +  ES +HV+RDCP A+ +W +++    R  FF    +
Sbjct: 199 RLMTKARLARWQIGNSYCDSCTQFEESTIHVVRDCPRAVHLWRHLISNQERGYFFVIEFD 258

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
           +WI++N+ +K G     +W  +WAT CY+LW WRNK +H++EFV P  PW  +++    Y
Sbjct: 259 EWIHLNLNNKFGQNYGNDWKAIWATTCYLLWLWRNKSIHDDEFVIPERPWQVVMDYVAAY 318

Query: 103 GDYLDKQLAVGVKR-KMEIQVCWKPPNNSWVKLNS 2
              +  +  VG  R + ++ + W  P   W  LNS
Sbjct: 319 KHSMLTEEQVGHGRVQQQVDITWLAPPPGWFALNS 353



 Score = 44.7 bits (104), Expect(2) = 1e-35
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 20/71 (28%)
 Frame = -3

Query: 623 PFYATDGTDLRIWPGNSQGQFSVSSA--------------------SLNVKQRIRQFIWL 504
           P + + G D ++WPG + GQF+VS+A                     ++  +RI+ FIW 
Sbjct: 135 PPHESQGEDGQLWPGTNTGQFTVSAAYQLLTEAAEENDEKKWTQIWKIDSTERIKVFIWQ 194

Query: 503 TRHDRLMTNQR 471
             HDRLMT  R
Sbjct: 195 LAHDRLMTKAR 205


>gb|PNY05394.1| ribonuclease H [Trifolium pratense]
          Length = 675

 Score =  144 bits (363), Expect = 2e-35
 Identities = 64/154 (41%), Positives = 89/154 (57%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           RL+TN RK+ M +  P+C HC + +E  +HVLRD PLA VVW N+++    D F+  NLE
Sbjct: 401 RLITNYRKSKMHICAPWCKHCVKAIEDTMHVLRDFPLAKVVWCNLMNSAVGDIFYAANLE 460

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
           DWI +N+   LG + E  WS VWA  C+ LW WRNK  H +E  R   PW  I+ + + Y
Sbjct: 461 DWITLNLNQDLGKEKEGTWSCVWAVGCHFLWFWRNKEAHGDESRRLSQPWQLIMSQFQHY 520

Query: 103 GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
                  +A  V+ K  +Q+ W  P   W+ LN+
Sbjct: 521 QQANILHVASHVRHKAVVQIGWTRPEEDWIMLNT 554


>gb|PNX97265.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1220

 Score =  145 bits (365), Expect = 2e-35
 Identities = 60/120 (50%), Positives = 81/120 (67%)
 Frame = -1

Query: 463  RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
            RL+TN RK  M +G P+C HC ++ E  LHVLRDCPLA  VW N+L+   R+KFF   L+
Sbjct: 1093 RLITNYRKNKMHIGEPWCTHCVDIXEDTLHVLRDCPLAKSVWCNLLNNAAREKFFAAELK 1152

Query: 283  DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
             WI+MN+   LG    + WS+VWAT+C+ LW WRN+  H+E  +RP HPW +I++   QY
Sbjct: 1153 TWIHMNLQQDLGRNMHMEWSSVWATSCHSLWTWRNRETHDETRLRPIHPWRYILDCHLQY 1212



 Score = 68.2 bits (165), Expect = 4e-09
 Identities = 33/60 (55%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
 Frame = -3

Query: 809  KVHAVCWDVVSTPKYMGGLGIRRLSTMNKACLMKLGWELRCDSADL-CKVLRGKYARDMT 633
            K HAV W+ V+ PK  GGLG+RRL  MNKACLMK+GW +R  +  L  +V++GKY R+ T
Sbjct: 869  KYHAVSWENVTLPKAYGGLGMRRLVQMNKACLMKMGWAIRSGADALWIEVIKGKYDRENT 928


>gb|PNY12120.1| 3-ketoacyl-CoA synthase, partial [Trifolium pratense]
          Length = 609

 Score =  142 bits (359), Expect = 4e-35
 Identities = 59/152 (38%), Positives = 91/152 (59%)
 Frame = -1

Query: 457 MTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLEDW 278
           +T  R++ M +GTPYC HC+  +E+ LHVLRDCPLA+++WVN +    +++FF+ +L DW
Sbjct: 155 LTEGRRSQMHIGTPYCHHCQSTIETTLHVLRDCPLAMIIWVNSVDVQIQNQFFDTDLNDW 214

Query: 277 INMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQYGD 98
           I +N+       ++  W   WAT C+ LW WRNK +H+E F+ P  PW  I   T+ Y  
Sbjct: 215 IELNI-------NKPRWVQFWATGCHALWTWRNKLIHDESFIMPLQPWKEIHRSTQLYEM 267

Query: 97  YLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
           +   Q  V +  ++   V W P    WV++N+
Sbjct: 268 HSSVQSTVNLVERVVTNVRWLPLEPGWVRINT 299


>dbj|GAU51253.1| hypothetical protein TSUD_412460, partial [Trifolium subterraneum]
          Length = 609

 Score =  134 bits (336), Expect(2) = 1e-34
 Identities = 58/154 (37%), Positives = 87/154 (56%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           R++TN R     L  PYC +C+ + E+ LHVLRDCPLA+ VW ++L    R +FF   L 
Sbjct: 310 RILTNWRTAKWNLTDPYCSYCEHMEETTLHVLRDCPLAVEVWQHLLEEEHRGRFFIGQLH 369

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
            WI++N+++ +G++ +L+W  VW T C+ LW+WRNK VHE      W PW+ I+    +Y
Sbjct: 370 QWIDLNLSTSIGIRRDLDWDAVWVTTCFWLWKWRNKRVHEPNHTSQWKPWSFILNLVNEY 429

Query: 103 GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
                 +      +K    + W  P   WV LN+
Sbjct: 430 KYTKQARETEKPCQKELKDIKWIYPAKGWVCLNT 463



 Score = 41.6 bits (96), Expect(2) = 1e-34
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 20/66 (30%)
 Frame = -3

Query: 608 DGTDLRIWPGNSQGQFSVSSA--------------------SLNVKQRIRQFIWLTRHDR 489
           +G D  +WPG   G FSV++A                     L   +RIR F+W   HDR
Sbjct: 251 NGPDTPLWPGERMGNFSVATAYQYLTGVHLREYEKKWFKIWRLETTERIRVFMWQVLHDR 310

Query: 488 LMTNQR 471
           ++TN R
Sbjct: 311 ILTNWR 316



 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 39/83 (46%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
 Frame = -3

Query: 809 KVHAVCWDVVSTPKYMGGLGIRRLSTMNKACLMKLGWELRCDSADL-CKVLRGKYARDMT 633
           K H + W+ V+ PK MGGLGIR+L+ MN A LMK GW LR     L  +VLRGKY R++ 
Sbjct: 114 KAHMIGWNQVTLPKEMGGLGIRKLAPMNDAFLMKFGWSLRMGERSLWAQVLRGKYGRNII 173

Query: 632 LQSP--FYATDG----TDLRIWP 582
                   ATD     T  R+WP
Sbjct: 174 EHGEVMICATDSSLWKTIGRLWP 196


>gb|PNX68268.1| ribonuclease H, partial [Trifolium pratense]
          Length = 194

 Score =  132 bits (332), Expect = 2e-34
 Identities = 53/144 (36%), Positives = 82/144 (56%)
 Frame = -1

Query: 433 MQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLEDWINMNMTSK 254
           M +G P+C+HC ++VE   HVL DCPLA  VW ++L  + R+ FF  N+++ + +N+   
Sbjct: 1   MHIGAPWCNHCVDIVEDTSHVLHDCPLAKSVWCSLLTNDVRNMFFTVNIKECVRINLHQN 60

Query: 253 LGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQYGDYLDKQLAV 74
           LG     +W +VWAT CY LW WRN+  H +  +RP  PW  I+    QY       +  
Sbjct: 61  LGRSMNRSWPSVWATGCYFLWMWRNREAHGDTRLRPAQPWNFILNWVDQYKRADVNDITS 120

Query: 73  GVKRKMEIQVCWKPPNNSWVKLNS 2
           G + K  + + W+ P + W+ LN+
Sbjct: 121 GTEHKTLVNIAWQRPEDGWILLNT 144


>gb|PNY06537.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1770

 Score =  136 bits (343), Expect(2) = 5e-34
 Identities = 59/154 (38%), Positives = 92/154 (59%)
 Frame = -1

Query: 463  RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
            R++T+ R + M LG P+C  C++ +E+ LHVLRDC  ++ VW+NI+H + R+ FFN + +
Sbjct: 1573 RMLTHYRMSKMNLGLPFCTFCEDEIETELHVLRDCSKSMQVWLNIVHDSSREVFFNADFQ 1632

Query: 283  DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
             WINMN+   +   D  NW + WA AC+ LW WRNK  H++ F RP+ P   I +   +Y
Sbjct: 1633 QWINMNLHGDIQGVDVNNWQSYWAIACHALWTWRNKEKHDDSFNRPYRPHLVIKQYMTEY 1692

Query: 103  GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
                     V V  ++  Q+ W PP+  W+ +N+
Sbjct: 1693 EKSSQVDHNVVVLPRVMRQIGWCPPSEGWIIINT 1726



 Score = 37.0 bits (84), Expect(2) = 5e-34
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 20/63 (31%)
 Frame = -3

Query: 599  DLRIWPGNSQGQFSVSSA--------------------SLNVKQRIRQFIWLTRHDRLMT 480
            D+  WP    G F+V+SA                     +   +R+R F+WL +H R++T
Sbjct: 1517 DINYWPAGKHGNFTVASAYNILADINCQHNNTTWNIVWKIQACERVRAFVWLLKHGRMLT 1576

Query: 479  NQR 471
            + R
Sbjct: 1577 HYR 1579



 Score = 76.6 bits (187), Expect = 5e-12
 Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
 Frame = -3

Query: 809  KVHAVCWDVVSTPKYMGGLGIRRLSTMNKACLMKLGWEL-RCDSADLCKVLRGKYARDMT 633
            K HAV W++ + PK +GGLG+RRL  MN+ACLMKLGW+L R  +   C VLRGKY R +T
Sbjct: 1350 KYHAVSWEIATKPKSLGGLGLRRLDVMNRACLMKLGWDLSRGSNGMWCAVLRGKYGRGVT 1409


>dbj|GAU17272.1| hypothetical protein TSUD_109880 [Trifolium subterraneum]
          Length = 168

 Score =  130 bits (326), Expect = 7e-34
 Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
 Frame = -1

Query: 433 MQLGTPYCDHCKEVVESILHVLRDCPLA-LVVWVNILHGNCRDKFFNCNLEDWINMNMTS 257
           M LGTPYC HC ++VE+ LHVLRDCPL  LVVW+N++  + R+ FF   L +WI +N+  
Sbjct: 1   MHLGTPYCFHCGDIVETTLHVLRDCPLVMLVVWMNLVPQHLREGFFTAELHNWITINI-- 58

Query: 256 KLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQYGDYLDKQLA 77
                ++  WS  WAT  + LW+WRNK +H ++FV    PW  I    + Y  Y   Q  
Sbjct: 59  -----EQPKWSHYWATTVHALWEWRNKALHYDDFVMFVKPWEVICSRVKHYYSYTRVQTI 113

Query: 76  VGVKRKMEIQVCWKPPNNSWVKLNS 2
            G+       + WKPP++  V+LN+
Sbjct: 114 AGLSNNNVEYIRWKPPDDGSVRLNT 138


>dbj|GAU34105.1| hypothetical protein TSUD_256010 [Trifolium subterraneum]
          Length = 679

 Score =  104 bits (260), Expect(2) = 2e-33
 Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLG-TPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNL 287
           RL+TN R++   +G +P C  C    E+ +HVLR+CPLA  +W+ ++  N    FF+ + 
Sbjct: 321 RLLTNYRRSKWGVGVSPLCSACDRDNETTIHVLRECPLATQIWIRLVPSNQISNFFSLHC 380

Query: 286 EDWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQ 107
            +WI  N+ ++L       WST++  AC+ +W WRNK + E+ F RP      I++    
Sbjct: 381 REWIFKNINNQLLGTHNKKWSTIFMVACWHMWMWRNKTIFEDHFQRPNDSIFKILKMVED 440

Query: 106 YGDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLN 5
              Y   Q  + + +   + + W  P   W+KLN
Sbjct: 441 INKY--TQHPLNIHQCNTVFIGWNKPREGWIKLN 472



 Score = 67.0 bits (162), Expect(2) = 2e-33
 Identities = 50/140 (35%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
 Frame = -3

Query: 803 HAVCWDVVSTPKYMGGLGIRRLSTMNKACLMKLGWELRCDSADL-CKVLRGKYAR----- 642
           H V WDV   P   GGLGI+R+  MN A LMK+ W L     DL CKV    ++R     
Sbjct: 190 HLVGWDVCCLPMNEGGLGIKRIHHMNDAFLMKMMWNLITKPNDLWCKVFGINFSRILCGK 249

Query: 641 -DMTLQSPF-YATDGTDLRIWPGNSQGQFSVSSA--SLNVK-----------------QR 525
            +M L  P     DG D   W G +   F+V SA  S N                    R
Sbjct: 250 LEMVLAIPAPKDIDGQDSIGWGGTNNRGFTVKSAYDSHNTSSHSIEGDWKALWNWKDPHR 309

Query: 524 IRQFIWLTRHDRLMTNQRKT 465
           I+ F+W+  H+RL+TN R++
Sbjct: 310 IQTFMWMAAHERLLTNYRRS 329


>gb|PNY10278.1| ribonuclease H [Trifolium pratense]
          Length = 374

 Score =  134 bits (337), Expect = 3e-33
 Identities = 60/154 (38%), Positives = 91/154 (59%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           R++T+ R + M LG P+C  C++ +E+ LHVLRDC  ++ VW+NI+H + R+ FFN + +
Sbjct: 198 RMLTHYRMSKMNLGLPFCTFCEDEIETELHVLRDCSKSMQVWLNIVHDSSREVFFNADFQ 257

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
            WINMN+   +   D  NW + WA AC+ LW WRNK  H + F RP+ P   I +   +Y
Sbjct: 258 QWINMNLHGDIQGVDVNNWQSYWAIACHALWTWRNKEKHYDCFNRPYRPHLVIKQYMTEY 317

Query: 103 GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
                    V V  ++  Q+ W PP+  W+ +NS
Sbjct: 318 EKSNQVDHNVVVLLRVMRQIGWCPPSEGWIIINS 351


>gb|PNY15498.1| ribonuclease H [Trifolium pratense]
          Length = 378

 Score =  132 bits (332), Expect = 1e-32
 Identities = 64/156 (41%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           RL+TN  K  M LG PYC  C   VE+I HV+RDCP+A VVW++I+    R  FFN   +
Sbjct: 70  RLLTNHYKHKMHLGYPYCRRCSLQVETISHVMRDCPIARVVWMHIVPHKLRRNFFNTGKD 129

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
            WI  N+       D + W+ +WA AC+ LW WRNK  H+    RP   W  I +  + Y
Sbjct: 130 VWIAQNVLYNWENNDGIKWNALWAIACHYLWLWRNKETHDSNVSRPPEAWVWIRKIAKDY 189

Query: 103 --GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
                + ++L  GV  + +IQV W+PP+  WVK+N+
Sbjct: 190 KIATAMAEELQKGV--RTQIQVKWQPPSIGWVKVNT 223


>gb|PNX88162.1| hypothetical protein L195_g044263 [Trifolium pratense]
          Length = 414

 Score =  132 bits (333), Expect = 2e-32
 Identities = 60/155 (38%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           R++TN +K  M LG+  CD C + VE+ILHV+RDCPL + +W+N++H N R  F     +
Sbjct: 256 RILTNYQKNRMGLGSSMCDFCGDQVETILHVMRDCPLVMPLWLNLVHSNMRRNFCTGYTQ 315

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
            WI+ N+   +  Q ++ W ++WA +C+  W WRNK  H   F+RP  P   ++   R Y
Sbjct: 316 QWIDFNLNVDVRGQFDVEWKSIWAISCHFAWSWRNKEKHGLNFIRPIAPTMVVMNVVRNY 375

Query: 103 GDYLDKQLAVGVK-RKMEIQVCWKPPNNSWVKLNS 2
               D  L + ++ RK+E  + WKPP   WV+LN+
Sbjct: 376 -VVADDVLHIDMESRKVEKLISWKPPPVGWVRLNT 409



 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
 Frame = -3

Query: 809 KVHAVCWDVVSTPKYMGGLGIRRLSTMNKACLMKLGWELRCDSADL-CKVLRGKYARDMT 633
           K HA+ WD+++ PK  GGLG+RRL+ MNKAC++KLG +L+  S +  C V+ GKY R  T
Sbjct: 31  KYHAIGWDIMTKPKDCGGLGLRRLTVMNKACILKLGRKLQTGSQEFWCNVMWGKYRRGST 90

Query: 632 LQSPFYATDGTDL-----RIWP 582
             +    T  + L     ++WP
Sbjct: 91  NNNVVAKTLDSHLWKSIVKLWP 112


>gb|PNY00647.1| ribonuclease H [Trifolium pratense]
          Length = 302

 Score =  130 bits (326), Expect = 2e-32
 Identities = 58/152 (38%), Positives = 83/152 (54%)
 Frame = -1

Query: 463 RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
           RL+TN  K  M L    CD+C+EV E  LH  RDC LA  +W +I+  + R  F+  +L 
Sbjct: 79  RLLTNSTKARMGLNHGMCDYCREVEEMCLHAPRDCELAKSIWTSIVPVHARASFYGGDLI 138

Query: 283 DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
           +W   N+   L   +E++W   WA  CY LW WRNK  H+E F+RP  P   +++ +R+Y
Sbjct: 139 NWFKYNLQGDLNKINEIHWPEFWANGCYSLWTWRNKEQHDENFLRPHQPVPFVLQRSREY 198

Query: 103 GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKL 8
            + +       +K    + V WKPP   WVKL
Sbjct: 199 FNAVQTTKVTTMKPHRTVWVGWKPPGAGWVKL 230


>gb|PNY12420.1| ribonuclease H [Trifolium pratense]
          Length = 1341

 Score =  127 bits (318), Expect(2) = 4e-32
 Identities = 56/154 (36%), Positives = 89/154 (57%)
 Frame = -1

Query: 463  RLMTNQRKTSMQLGTPYCDHCKEVVESILHVLRDCPLALVVWVNILHGNCRDKFFNCNLE 284
            RL+TN  K+SM LG   C++C +VVE+ +HV+RDCP A+ +WV ++  N R  F   N++
Sbjct: 1033 RLLTNSTKSSMGLGHAMCNYCGDVVETAIHVMRDCPKAMQIWVTVVPANDRGSFLMGNVK 1092

Query: 283  DWINMNMTSKLGLQDELNWSTVWATACYMLWQWRNKGVHEEEFVRPWHPWTHIIEETRQY 104
            +W+  N+ + +       W   WA AC+ LW WRNK +H+E+FVRP  P   +++    Y
Sbjct: 1093 NWVCFNLQNSVTWDRRGQWREYWAQACHCLWFWRNKDIHDEDFVRPTRPVQQVMKLLGDY 1152

Query: 103  GDYLDKQLAVGVKRKMEIQVCWKPPNNSWVKLNS 2
                +    V  + +    + W PP  ++VKLN+
Sbjct: 1153 MHAFNNNNVVLERTRSIRWIGWSPPKMNFVKLNT 1186



 Score = 40.4 bits (93), Expect(2) = 4e-32
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 20/67 (29%)
 Frame = -3

Query: 605  GTDLRIWPGNSQGQFSVSSA--------------------SLNVKQRIRQFIWLTRHDRL 486
            G D R+  G S+  FSVSS                      L V +R+R F+WL  HDRL
Sbjct: 975  GCDERLGVGGSKYSFSVSSMYNNLCDFHGNESDSTWNMIWKLQVPERVRAFVWLLMHDRL 1034

Query: 485  MTNQRKT 465
            +TN  K+
Sbjct: 1035 LTNSTKS 1041



 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
 Frame = -3

Query: 803 HAVCWDVVSTPKYMGGLGIRRLSTMNKACLMKLGWELRCDSADL-CKVLRGKY 648
           HA+ W+ ++ PK MGGLG R+L TMNKACL+KL W+    + D  C+VLRGKY
Sbjct: 813 HAIGWEKLTVPKRMGGLGFRKLETMNKACLLKLVWKFLESNDDYWCRVLRGKY 865