BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00032860
         (1477 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX84261.1| ribonuclease H, partial [Trifolium pratense]           497   e-169
gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]           484   e-157
gb|PNX92765.1| ribonuclease H [Trifolium pratense]                    455   e-144
gb|PNX93226.1| ribonuclease H, partial [Trifolium pratense]           442   e-144
gb|PNX92520.1| ribonuclease H, partial [Trifolium pratense]           437   e-141
dbj|GAU35685.1| hypothetical protein TSUD_162570 [Trifolium subt...   440   e-138
gb|PNX93586.1| ribonuclease H, partial [Trifolium pratense]           427   e-137
dbj|GAU37589.1| hypothetical protein TSUD_365100 [Trifolium subt...   407   e-132
dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subt...   409   e-128
gb|PNX92714.1| ribonuclease H [Trifolium pratense]                    411   e-127
gb|PNX92852.1| hypothetical protein L195_g015995, partial [Trifo...   390   e-126
dbj|GAU20604.1| hypothetical protein TSUD_33400 [Trifolium subte...   402   e-125
dbj|GAU49954.1| hypothetical protein TSUD_180180 [Trifolium subt...   395   e-124
gb|KYP32780.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]   362   e-122
gb|PNY05589.1| ribonuclease H [Trifolium pratense]                    398   e-122
dbj|GAU51664.1| hypothetical protein TSUD_268670 [Trifolium subt...   395   e-122
gb|PNX92211.1| ribonuclease H, partial [Trifolium pratense]           398   e-122
gb|PNY14872.1| ribonuclease H, partial [Trifolium pratense]           346   e-121
gb|KYP67620.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]   354   e-120
gb|PNY14401.1| ribonuclease H [Trifolium pratense]                    390   e-119

>gb|PNX84261.1| ribonuclease H, partial [Trifolium pratense]
          Length = 574

 Score =  497 bits (1280), Expect = e-169
 Identities = 257/379 (67%), Positives = 294/379 (77%), Gaps = 13/379 (3%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            H KTVI+RKRNK          WC DD TL EEA ++YKNLF SQ     AD+DDS+   
Sbjct: 34   HTKTVIRRKRNKIHGLHLPNGIWCTDDTTLREEAQTYYKNLFCSQTPQVNADIDDSL--- 90

Query: 1285 FE*RGQALLDQTC-------DKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDIT 1127
               +   L ++ C        +      L     F +PG DGFQ +FFKQYWHIVGDD+ 
Sbjct: 91   ---QIPTLTEEACLSLTKQITRDEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVV 147

Query: 1126 HLISEAFVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPL 947
             LIS +F TG+F  +L+ TLIALIPKVDCP NFKEFRPISLCNTIYKLITKIMVNRLRP 
Sbjct: 148  RLISTSFETGSFPPALAETLIALIPKVDCPTNFKEFRPISLCNTIYKLITKIMVNRLRPH 207

Query: 946  LDQIVGPFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFL 767
            L+QIVGPFQSSFLPGKGT D+AIILQEAIH+M++SKRKKGDMVFKIDLEKAYDNV W+FL
Sbjct: 208  LNQIVGPFQSSFLPGKGTTDNAIILQEAIHSMKKSKRKKGDMVFKIDLEKAYDNVSWEFL 267

Query: 766  EFCLHHNGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICME 587
            + CL  NGFP  T  LIM+CV+SSSL I+WNG RL +F PTRGL+QGDPLS YLFVICME
Sbjct: 268  QHCLQRNGFPPSTISLIMYCVSSSSLIILWNGCRLPSFTPTRGLRQGDPLSPYLFVICME 327

Query: 586  FLSQKILKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVL 407
            FLSQ I++ VE+G+WKPVRLSRNGPPLSHLFFADDVLLFAKAT SQA+ IA +L RFA  
Sbjct: 328  FLSQIIIREVEEGHWKPVRLSRNGPPLSHLFFADDVLLFAKATKSQALNIASTLTRFANY 387

Query: 406  SGLKINVAKSKVFFSSSTK 350
            SGLK+NV+KSKVFFSS+TK
Sbjct: 388  SGLKVNVSKSKVFFSSTTK 406



 Score =  182 bits (462), Expect = 2e-47
 Identities = 89/133 (66%), Positives = 104/133 (78%)
 Frame = -2

Query: 399 LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
           LK+ +   K  F    K  K+  IV++TGI RT SLEKYLGFPMLH RL R+DYEFLEEK
Sbjct: 390 LKVNVSKSKVFFSSTTKRGKITSIVNSTGINRTYSLEKYLGFPMLHERLHRRDYEFLEEK 449

Query: 219 TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
            SQRLASWK+ LLNKAGR+T VKSVLNSIP YYMQ+ WLPQSTC+ ID+M+ NF+WKG S
Sbjct: 450 VSQRLASWKHNLLNKAGRMTLVKSVLNSIPNYYMQVAWLPQSTCDSIDRMARNFLWKGTS 509

Query: 39  TSGAHLVGCDKIT 1
            +G +LVG DKIT
Sbjct: 510 NTGINLVGWDKIT 522


>gb|PNY15195.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1142

 Score =  484 bits (1247), Expect = e-157
 Identities = 248/374 (66%), Positives = 288/374 (77%), Gaps = 8/374 (2%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            H KT+I+RKRNK          WC+DD  L +EA +++KN F SQ    + +++    + 
Sbjct: 307  HTKTIIRRKRNKIHGLHLPNGIWCNDDTILRQEAQTYFKNFFCSQTPLASGELNGLPLAP 366

Query: 1285 F--E*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISE 1112
               E   Q+L  Q   +      L     F +PG DGFQ +FFKQYWHIVGDD+  +IS 
Sbjct: 367  ILNEEAYQSLSSQVT-RDEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVVRIIST 425

Query: 1111 AFVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIV 932
            AF TG+F+ S+S TLIALIPKVDCP NFKE RPISLCNT+YKLITKIMVNRLRP L+QIV
Sbjct: 426  AFDTGSFHPSISETLIALIPKVDCPNNFKELRPISLCNTVYKLITKIMVNRLRPHLNQIV 485

Query: 931  GPFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLH 752
            GPFQSSFLPGKGT D+AIILQEAIH+MR+SKRKKGDMVFKIDLEKAYDNV W+FLEFCL 
Sbjct: 486  GPFQSSFLPGKGTTDNAIILQEAIHSMRKSKRKKGDMVFKIDLEKAYDNVNWEFLEFCLQ 545

Query: 751  HNGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQK 572
             NGFP    KLIM CV+SSS+SI+WNG+RL NF PT+GL+QGDPLS YLFV+CME LSQ 
Sbjct: 546  RNGFPPTIIKLIMFCVSSSSMSIMWNGRRLPNFTPTKGLRQGDPLSPYLFVLCMECLSQV 605

Query: 571  ILKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKI 392
            I+K+V DG WKPVRLSRNGPPLSHLFFADDVLLFAKAT SQA+ +A +L  FA  SGLK+
Sbjct: 606  IIKAVNDGLWKPVRLSRNGPPLSHLFFADDVLLFAKATKSQALNVATTLTHFASFSGLKV 665

Query: 391  NVAKSKVFFSSSTK 350
            N  KSKVFFSSSTK
Sbjct: 666  NATKSKVFFSSSTK 679



 Score =  187 bits (474), Expect = 2e-47
 Identities = 91/133 (68%), Positives = 104/133 (78%)
 Frame = -2

Query: 399  LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
            LK+     K  F    K  KM  IV++TGI RT SLEKYLGFPM+HGRLQRKDYEFLEEK
Sbjct: 663  LKVNATKSKVFFSSSTKRGKMTSIVTSTGISRTHSLEKYLGFPMMHGRLQRKDYEFLEEK 722

Query: 219  TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
             S RLASW++ LLNKAGR+T VKSVLNSIP YYMQ+ WLPQSTC  ID+M+ NF+WKGNS
Sbjct: 723  ISHRLASWQHNLLNKAGRMTLVKSVLNSIPNYYMQVAWLPQSTCETIDRMARNFLWKGNS 782

Query: 39   TSGAHLVGCDKIT 1
            ++G HLV  DKIT
Sbjct: 783  STGVHLVSWDKIT 795


>gb|PNX92765.1| ribonuclease H [Trifolium pratense]
          Length = 1310

 Score =  455 bits (1171), Expect = e-144
 Identities = 228/370 (61%), Positives = 278/370 (75%), Gaps = 7/370 (1%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFS-SQNQTFTADMDDSICS 1289
            HA+T+I+RKRNK          WC +D+ L EEAL F+KNLFS +   + +   D     
Sbjct: 317  HAQTIIRRKRNKIHGLTLPCGSWCTEDSILQEEALKFFKNLFSPATGSSHSHSFDVKYTP 376

Query: 1288 KFE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISEA 1109
            KF+    + L Q   K   +  L       SPG DGFQ +FF++YWHI+G+DI  +I++A
Sbjct: 377  KFDSVQASALTQEVTKEEVYQALNQMHPLKSPGPDGFQGVFFRRYWHIMGEDIYTMINQA 436

Query: 1108 FVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIVG 929
            F TG FN SL+ TLI LIPKVDCP NFKEFRPISLCNT+YKLITK++VNRLRP+LD I+G
Sbjct: 437  FSTGHFNPSLAETLICLIPKVDCPNNFKEFRPISLCNTLYKLITKVLVNRLRPMLDSIIG 496

Query: 928  PFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLHH 749
            PFQSSFLPG+GTCD+AIILQE IH+MR+SK KKGD+ +KIDLEKAYDNV W +L  CL  
Sbjct: 497  PFQSSFLPGRGTCDNAIILQEIIHSMRKSKSKKGDVAYKIDLEKAYDNVDWSYLRSCLRD 556

Query: 748  NGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQKI 569
             GFP IT KLIMHCV+SSSLS+IWNG RL NF+PTRGL+QGDPLS YLFVICME LS  I
Sbjct: 557  FGFPPITIKLIMHCVSSSSLSLIWNGNRLPNFSPTRGLRQGDPLSPYLFVICMEKLSLAI 616

Query: 568  LKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKIN 389
            +++V+D  WKP+R+S+NGP  SHLFFADDVLLF+KAT SQ  L+A+  N F+  SGLKIN
Sbjct: 617  VEAVQDNCWKPIRVSKNGPCFSHLFFADDVLLFSKATCSQGRLMANLFNNFSKASGLKIN 676

Query: 388  VAKSKVFFSS 359
              KS+ FFS+
Sbjct: 677  CTKSRAFFSA 686



 Score =  147 bits (370), Expect = 8e-34
 Identities = 72/133 (54%), Positives = 90/133 (67%)
 Frame = -2

Query: 399  LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
            LK+     ++ F       K + + S + IR T S   YLGFPM+ GR++++D+ F+ +K
Sbjct: 673  LKINCTKSRAFFSAGVTRRKREKLTSLSSIRSTNSFGNYLGFPMISGRVRKEDFNFILDK 732

Query: 219  TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
             + RLASWKNKLLNK GRVT  KSVLNSIPTYYMQI WLP S C  ID+M+ NFIWKG+S
Sbjct: 733  LNSRLASWKNKLLNKPGRVTLAKSVLNSIPTYYMQISWLPSSICYQIDQMTRNFIWKGSS 792

Query: 39   TSGAHLVGCDKIT 1
              G HLVG   IT
Sbjct: 793  NKGIHLVGWSSIT 805


>gb|PNX93226.1| ribonuclease H, partial [Trifolium pratense]
          Length = 851

 Score =  442 bits (1138), Expect = e-144
 Identities = 226/370 (61%), Positives = 275/370 (74%), Gaps = 8/370 (2%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFS--SQNQTFTADMDDSIC 1292
            HA+T+I+RKRNK          WC DD  L EEA +F+KNLF+  S NQT   D+D  + 
Sbjct: 317  HAQTIIRRKRNKIHGLTLPCGAWCTDDIILQEEANNFFKNLFAPISNNQTIVFDIDH-VP 375

Query: 1291 SKFE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISE 1112
               E +   LL Q   K      L       +PG DGFQ +FF++YWHI+G+DI +L+S+
Sbjct: 376  KLNEDQASTLLQQI-SKEEVLAALNQMHPLKAPGPDGFQGVFFRRYWHIIGEDIYNLVSQ 434

Query: 1111 AFVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIV 932
            AF TG FN SL+ TLI LIPK+DCP++FK+FRPISLCNT+YKLITK++VNRLRP+LD I+
Sbjct: 435  AFNTGYFNPSLAETLICLIPKIDCPKHFKDFRPISLCNTLYKLITKVLVNRLRPMLDSII 494

Query: 931  GPFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLH 752
            GPFQSSFLPG+GTCD+AIILQE IH M +SK KKGD+ FKIDLEKAYDNV W++L  CL 
Sbjct: 495  GPFQSSFLPGRGTCDNAIILQEIIHHMNKSKSKKGDVAFKIDLEKAYDNVNWNYLRSCLL 554

Query: 751  HNGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQK 572
              GFP I  KLIMHCV+SSSLS+IWNGKRL NF PTRGL+QGDPLS YLFVICME LS  
Sbjct: 555  DFGFPPIIIKLIMHCVSSSSLSLIWNGKRLPNFTPTRGLRQGDPLSPYLFVICMEKLSLA 614

Query: 571  ILKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKI 392
            I ++V+   W PV++S+NGP  SHLFFADDVLLF+KAT +Q   IA+  N F++ SGLKI
Sbjct: 615  ISEAVQKNSWSPVQISKNGPRFSHLFFADDVLLFSKATCAQGRTIANLFNSFSIASGLKI 674

Query: 391  NVAKSKVFFS 362
            N  KS+V FS
Sbjct: 675  NCVKSRVLFS 684



 Score =  147 bits (370), Expect = 6e-34
 Identities = 76/139 (54%), Positives = 94/139 (67%), Gaps = 2/139 (1%)
 Frame = -2

Query: 411  FSLALKLMLPSQKSSFLLQP--KSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDY 238
            FS+A  L +   KS  L       SK D I + + IR T SL  YLGFPM+ GR+++ D+
Sbjct: 666  FSIASGLKINCVKSRVLFSKGVPRSKRDKITNLSSIRSTNSLGNYLGFPMVTGRVKKADF 725

Query: 237  EFLEEKTSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNF 58
             F+ +K + RLASWKNKLL+K GRVT  KSV+NSIPTYYMQI WLP S C+ ID M+  F
Sbjct: 726  AFIIDKLNSRLASWKNKLLSKPGRVTLAKSVMNSIPTYYMQISWLPSSICSQIDMMTRKF 785

Query: 57   IWKGNSTSGAHLVGCDKIT 1
            IWKGNS  G HLVG + +T
Sbjct: 786  IWKGNSNKGIHLVGWNVVT 804


>gb|PNX92520.1| ribonuclease H, partial [Trifolium pratense]
          Length = 865

 Score =  437 bits (1123), Expect = e-141
 Identities = 218/368 (59%), Positives = 270/368 (73%), Gaps = 6/368 (1%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            HA+TVI+RKRNK          WC DD  L EEA   +KNLF+  N +     D ++  K
Sbjct: 296  HAQTVIRRKRNKIHGITLPCGAWCTDDTILQEEAKKIFKNLFAPPNNSPHCSFDVAVVPK 355

Query: 1285 FE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISEAF 1106
             +      L     K   F  L       +PG DGFQ +FF+QYWHI+G+DI  ++SEAF
Sbjct: 356  LDAEQVQTLLHHVSKEEVFIALNQMHPLKAPGPDGFQGVFFRQYWHILGNDICDMVSEAF 415

Query: 1105 VTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIVGP 926
             TG FN SL+ TLI LIPK DCP++FK+FRPISLCNT+YKLITKI+VNRLRP+LD IVGP
Sbjct: 416  ATGQFNPSLAETLICLIPKEDCPKHFKDFRPISLCNTLYKLITKILVNRLRPMLDSIVGP 475

Query: 925  FQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLHHN 746
            FQSSFLPG+GT D+AIILQE I+ M +SK KKGD+ +KIDLEKAYDNV W++L  CLH  
Sbjct: 476  FQSSFLPGRGTSDNAIILQEVIYNMNKSKAKKGDVAYKIDLEKAYDNVDWNYLRSCLHDF 535

Query: 745  GFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQKIL 566
            GFP +T KLIMHCV SS+LS+IWNG+RL +F+PTRGL+QGDPLS YLFV+CME LS  I 
Sbjct: 536  GFPPLTIKLIMHCVCSSTLSLIWNGQRLPSFSPTRGLRQGDPLSPYLFVLCMEKLSLAIS 595

Query: 565  KSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKINV 386
            ++V++  WKP+++S+NGP  SHLFFADDVLLF+KAT SQ  ++A+  N F+  SGLKIN 
Sbjct: 596  EAVQNNSWKPIQISKNGPRFSHLFFADDVLLFSKATCSQGRIMANLFNNFSKASGLKINC 655

Query: 385  AKSKVFFS 362
            AKS+  FS
Sbjct: 656  AKSRALFS 663



 Score =  156 bits (394), Expect = 4e-37
 Identities = 76/133 (57%), Positives = 94/133 (70%)
 Frame = -2

Query: 399  LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
            LK+     ++ F       KMD + S +GIR T +L KYLGFPM+ GR+++ DY F+ +K
Sbjct: 651  LKINCAKSRALFSKGVPRRKMDKLTSLSGIRSTNALGKYLGFPMITGRVRKDDYHFILDK 710

Query: 219  TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
             + RLASWKNK LNK GRVT  KSVLNSIPTYYMQI WLP S C+ ID+++ NFIWKGNS
Sbjct: 711  LNSRLASWKNKFLNKPGRVTLAKSVLNSIPTYYMQISWLPSSICSQIDQLTRNFIWKGNS 770

Query: 39   TSGAHLVGCDKIT 1
             +G HLVG   IT
Sbjct: 771  NNGIHLVGWQSIT 783


>dbj|GAU35685.1| hypothetical protein TSUD_162570 [Trifolium subterraneum]
          Length = 1375

 Score =  440 bits (1131), Expect = e-138
 Identities = 233/356 (65%), Positives = 263/356 (73%), Gaps = 7/356 (1%)
 Frame = -1

Query: 1399 WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSKFE*RGQALLDQTCD-------K 1241
            WC DD TL EEA   +KNLF   N      ++D   + F      L D+ C        +
Sbjct: 533  WCTDDTTLREEAQKHFKNLFCILNTCDQNALNDLPEAPF------LNDEACQSLTQQVTR 586

Query: 1240 GGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISEAFVTGTFNSSLSVTLIA 1061
                  L     F +PG DGFQ +FFKQYWHIVGDD+  LIS AF TG F S+LS TLIA
Sbjct: 587  EEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVVRLISTAFETGRFPSTLSETLIA 646

Query: 1060 LIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIVGPFQSSFLPGKGTCDDA 881
            LIPKVDCP+NFKEFRPISLCNTIYKLITKIM                SSFLPGKGT D+A
Sbjct: 647  LIPKVDCPKNFKEFRPISLCNTIYKLITKIM----------------SSFLPGKGTTDNA 690

Query: 880  IILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLHHNGFPTITTKLIMHCVT 701
            IILQEAIH+M++SKRKKGDMVFKIDLEKAYDNV WDFL+FCL  +GFP IT KLIM CV+
Sbjct: 691  IILQEAIHSMKKSKRKKGDMVFKIDLEKAYDNVSWDFLQFCLQRSGFPPITIKLIMFCVS 750

Query: 700  SSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQKILKSVEDGYWKPVRLSR 521
            SSSL+I+WNG+RL +F PTRGL+QGDPLS YLFV+CME LSQ I+K+V+DGYWKPVRLSR
Sbjct: 751  SSSLAILWNGRRLPSFTPTRGLRQGDPLSPYLFVVCMECLSQVIIKAVDDGYWKPVRLSR 810

Query: 520  NGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKINVAKSKVFFSSST 353
            NGPPLSHLFF DDVLLFAKAT SQA+ IA  L RFA  SGLK+NV+KSKVFFS ST
Sbjct: 811  NGPPLSHLFFVDDVLLFAKATNSQALNIATILTRFASCSGLKVNVSKSKVFFSPST 866



 Score =  177 bits (450), Expect = 3e-44
 Identities = 85/133 (63%), Positives = 105/133 (78%)
 Frame = -2

Query: 399  LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
            LK+ +   K  F       K++ IV++TGI RT SLEKYLGFPM+HGRL+R+D+EFLEEK
Sbjct: 851  LKVNVSKSKVFFSPSTPRGKINSIVTHTGINRTHSLEKYLGFPMMHGRLRRRDFEFLEEK 910

Query: 219  TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
             SQRLASW++ LLNKAGR+T VKSVLNSIP YYMQ+ WLPQ+TC+ ID+M+ +F+WKG S
Sbjct: 911  ISQRLASWQHNLLNKAGRMTLVKSVLNSIPNYYMQVAWLPQTTCDSIDRMTRSFLWKGAS 970

Query: 39   TSGAHLVGCDKIT 1
              G HLVG DKIT
Sbjct: 971  NKGIHLVGWDKIT 983


>gb|PNX93586.1| ribonuclease H, partial [Trifolium pratense]
          Length = 953

 Score =  427 bits (1098), Expect = e-137
 Identities = 217/374 (58%), Positives = 278/374 (74%), Gaps = 7/374 (1%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKA------LSFWCDDDATLGEEALSFYKNLFSSQNQTFTAD-MDDSICS 1289
            HA TVI+RKRNK          WC DD  L +EA  F+KNLF +   +  ++  ++++ S
Sbjct: 412  HATTVIRRKRNKIHGLHLPCGMWCTDDNILKDEAQKFFKNLFGADPLSRNSNPTNENVTS 471

Query: 1288 KFE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISEA 1109
                                P+L   A          +T+  ++YWHIVG+D+ +L+ +A
Sbjct: 472  --------------------PKLSEEAVECLS-----KTVTREEYWHIVGEDVYNLVCQA 506

Query: 1108 FVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIVG 929
            F +GTFNS +  TLIALIPKVD PQNFKEFRPISLCNTIYKLITK++VNRLRP LDQI+G
Sbjct: 507  FASGTFNSCIGETLIALIPKVDYPQNFKEFRPISLCNTIYKLITKVLVNRLRPYLDQIIG 566

Query: 928  PFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLHH 749
            P+QSSFLPG+GTCD+AI+LQE IH+M++SK+KKGD+V+KIDLEKAYD+V W+FL  CL  
Sbjct: 567  PYQSSFLPGRGTCDNAIVLQEVIHSMKKSKKKKGDVVYKIDLEKAYDHVNWEFLRSCLIQ 626

Query: 748  NGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQKI 569
             GFP IT  LIMHCV++SSLS+IWNG+RL +F+PTRGL+QGDPLS YLFVICME LS  I
Sbjct: 627  FGFPPITITLIMHCVSASSLSLIWNGQRLPSFSPTRGLRQGDPLSPYLFVICMESLSHAI 686

Query: 568  LKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKIN 389
            L++V++  WKPV +SRNGP LSHLFFADDVLLF+KATVSQA +I   L +FA LSGL++N
Sbjct: 687  LQAVDNNAWKPVSISRNGPGLSHLFFADDVLLFSKATVSQATVIEGILTKFANLSGLRVN 746

Query: 388  VAKSKVFFSSSTKE 347
            + KS+ FFS++T++
Sbjct: 747  IQKSRAFFSATTRQ 760



 Score =  158 bits (400), Expect = 8e-38
 Identities = 72/132 (54%), Positives = 99/132 (75%)
 Frame = -2

Query: 399  LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
            L++ +   ++ F    + +K+D IVS TGI+ T SLEKYLGFP++HGRL ++DY+F  +K
Sbjct: 743  LRVNIQKSRAFFSATTRQNKIDSIVSITGIQNTNSLEKYLGFPIIHGRLCKRDYDFFIDK 802

Query: 219  TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
               RLASWKNKLLNKAGR+  V+SVL SIPTYYMQ+ WLP S C+++D++S  F+W+G +
Sbjct: 803  IQHRLASWKNKLLNKAGRLALVQSVLTSIPTYYMQLNWLPSSICDYMDRISRKFLWRGTN 862

Query: 39   TSGAHLVGCDKI 4
              G HLVG +KI
Sbjct: 863  DRGIHLVGWEKI 874


>dbj|GAU37589.1| hypothetical protein TSUD_365100 [Trifolium subterraneum]
          Length = 648

 Score =  407 bits (1047), Expect = e-132
 Identities = 190/279 (68%), Positives = 235/279 (84%)
 Frame = -1

Query: 1198 SPGADGFQTMFFKQYWHIVGDDITHLISEAFVTGTFNSSLSVTLIALIPKVDCPQNFKEF 1019
            +PG DGFQ +FF+QYWHI+GDDI  +I++AF TG  N +L+ TLI LIPKVDCP++FK+F
Sbjct: 6    APGPDGFQGVFFRQYWHILGDDIYEMINQAFTTGQLNPTLAETLICLIPKVDCPKHFKDF 65

Query: 1018 RPISLCNTIYKLITKIMVNRLRPLLDQIVGPFQSSFLPGKGTCDDAIILQEAIHTMRRSK 839
            RPISLCNT+YKLITKI+VNRLRP+LD I+GPFQSSFLPG+GTCD+AIILQE I+ M++SK
Sbjct: 66   RPISLCNTLYKLITKILVNRLRPMLDSIIGPFQSSFLPGRGTCDNAIILQEIIYNMQKSK 125

Query: 838  RKKGDMVFKIDLEKAYDNVRWDFLEFCLHHNGFPTITTKLIMHCVTSSSLSIIWNGKRLQ 659
             KKGD+ +KIDLEKAYDNV W+FL  CLH  GFP +T KLIMHCV+SSSLS+IWNGKRL 
Sbjct: 126  AKKGDVAYKIDLEKAYDNVNWNFLRSCLHDFGFPQLTVKLIMHCVSSSSLSLIWNGKRLP 185

Query: 658  NFNPTRGLQQGDPLSLYLFVICMEFLSQKILKSVEDGYWKPVRLSRNGPPLSHLFFADDV 479
            NF+PTRGL+QGDPLS YLFV+CME LS  I  +V++  WKP+++S+NGP  SHLFFADDV
Sbjct: 186  NFSPTRGLRQGDPLSPYLFVLCMEKLSLAISAAVQNNSWKPLQISKNGPRFSHLFFADDV 245

Query: 478  LLFAKATVSQAVLIADSLNRFAVLSGLKINVAKSKVFFS 362
            LLF+KAT +Q  ++A+  N F+  SGL+IN AKS+  FS
Sbjct: 246  LLFSKATCAQGRVMANLFNNFSKASGLRINCAKSRALFS 284



 Score =  141 bits (356), Expect = 2e-32
 Identities = 72/133 (54%), Positives = 91/133 (68%), Gaps = 2/133 (1%)
 Frame = -2

Query: 411 FSLALKLMLPSQKSSFLLQPKSS--KMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDY 238
           FS A  L +   KS  L     +  K+D + + + IR T SL KYLGFPM+ GR +++D+
Sbjct: 266 FSKASGLRINCAKSRALFSKGVTRRKVDKMTTLSNIRSTTSLGKYLGFPMISGRAKKEDF 325

Query: 237 EFLEEKTSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNF 58
            F+ +K + RLASWKNK LNK GRVT  KSVLNSIPTYYMQI WLP + C+ ID+ + NF
Sbjct: 326 NFILDKINSRLASWKNKFLNKLGRVTLAKSVLNSIPTYYMQIHWLPSAICSKIDQTTRNF 385

Query: 57  IWKGNSTSGAHLV 19
           IWKGN+  G HLV
Sbjct: 386 IWKGNTNKGIHLV 398


>dbj|GAU41508.1| hypothetical protein TSUD_302460 [Trifolium subterraneum]
          Length = 1075

 Score =  409 bits (1050), Expect = e-128
 Identities = 202/372 (54%), Positives = 262/372 (70%), Gaps = 9/372 (2%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            HA+T+I+RKRN+          W  D + L  EA +++KNLFSS     ++  +      
Sbjct: 158  HAQTIIRRKRNRIHKLQLPNGTWSSDSSILQHEAQNYFKNLFSSSQHNTSSSFNVGTHPT 217

Query: 1285 FE*RGQALLDQTCDKG---GGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLIS 1115
             +  G+  L +   K         +KPY    +PG DGFQ +FFKQYWH+VGDDI  L+ 
Sbjct: 218  IDEDGRNSLSKPVTKEEVTAALNSMKPYK---APGPDGFQCIFFKQYWHLVGDDIFDLVK 274

Query: 1114 EAFVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQI 935
             AF TG F+ ++S TLI+LIPK+D P  +++FRPISLCN +YK+ITK++V+RLRP+LD I
Sbjct: 275  TAFHTGYFDPTISDTLISLIPKIDSPTTYRDFRPISLCNIVYKIITKVLVHRLRPILDSI 334

Query: 934  VGPFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCL 755
            +GP+QSSFLPG+GT D+AI+LQE IH MRRSKRKKG + FK+DLEKA+DNV WDFL+ CL
Sbjct: 335  IGPYQSSFLPGRGTSDNAIVLQEIIHFMRRSKRKKGFVAFKLDLEKAFDNVNWDFLKSCL 394

Query: 754  HHNGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQ 575
            H  GFP IT +LIMHCVTSS+ S++WNG +L +F PT GL+QGDPLS YLF++CME LS 
Sbjct: 395  HDFGFPNITIRLIMHCVTSSNFSLLWNGNKLPSFKPTHGLRQGDPLSPYLFILCMEKLSI 454

Query: 574  KILKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLK 395
             I   V  G W P+R+S  GP LSHL FADDVLLF KA  SQ   I +  +RF + SGLK
Sbjct: 455  SINSVVHQGAWDPIRISNTGPHLSHLLFADDVLLFTKAKNSQIRFITNLFDRFGLASGLK 514

Query: 394  INVAKSKVFFSS 359
            IN++KS+ F+SS
Sbjct: 515  INLSKSRAFYSS 526



 Score =  143 bits (360), Expect = 1e-32
 Identities = 70/138 (50%), Positives = 96/138 (69%), Gaps = 2/138 (1%)
 Frame = -2

Query: 411 FSLA--LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDY 238
           F LA  LK+ L   ++ +      +K++ + S +GIR T+SL+KYLGFP+L GR +R D+
Sbjct: 507 FGLASGLKINLSKSRAFYSSGIPQAKINKLTSLSGIRSTVSLDKYLGFPILKGRAKRNDF 566

Query: 237 EFLEEKTSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNF 58
            F+ +K   RLASWKN+LLNK GR+    SVL+SIPTYYMQI WLPQS C+ ID+ +  F
Sbjct: 567 NFIIDKMQSRLASWKNRLLNKPGRLALASSVLSSIPTYYMQIAWLPQSICDSIDQTTRKF 626

Query: 57  IWKGNSTSGAHLVGCDKI 4
           +WK ++  G HLVG +KI
Sbjct: 627 LWKDSNNKGIHLVGWNKI 644


>gb|PNX92714.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score =  411 bits (1057), Expect = e-127
 Identities = 210/373 (56%), Positives = 264/373 (70%), Gaps = 10/373 (2%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKA------LSFWCDDDATLGEEALSFYKNLFSS----QNQTFTADMDDS 1298
            HA+T+I+RKRNK          W  D + +  E   F+K+LF S     N +F  +    
Sbjct: 366  HAQTIIRRKRNKIHNIQLPTGIWSSDSSIIQHETQKFFKDLFCSPQSPHNHSFVINTHPI 425

Query: 1297 ICSKFE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLI 1118
            I +     G   L +   K      L     F +PG DGFQ +FFKQYWHIVGDDI +L+
Sbjct: 426  IDAD----GCGNLTKDVTKEEVTLALNSMKPFKAPGPDGFQCIFFKQYWHIVGDDIYNLV 481

Query: 1117 SEAFVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQ 938
              AF TG F+S +S TLIALIPKVD P  FKE RPISLCN +YK+ITK++VNRLRP+LD 
Sbjct: 482  KNAFATGHFDSKISETLIALIPKVDPPTTFKELRPISLCNIVYKIITKVLVNRLRPMLDN 541

Query: 937  IVGPFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFC 758
            ++GPFQSSFLPG+GT D+AI+LQE +H MR+SK+KKGD+ FK+DLEKA+DNV W FL+ C
Sbjct: 542  LIGPFQSSFLPGRGTSDNAIVLQEVVHYMRKSKKKKGDVAFKLDLEKAFDNVNWTFLKNC 601

Query: 757  LHHNGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLS 578
            L+  GFPTITT LIMHCVTSS+LSI+WNG R+ +F PT GL+QGDPLS YLF++CME LS
Sbjct: 602  LNDFGFPTITTNLIMHCVTSSNLSILWNGNRMPSFKPTHGLRQGDPLSPYLFILCMEKLS 661

Query: 577  QKILKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGL 398
              I ++V+ G WKP+ +SRNGP LSHL FADDVLLF+KA  SQ   I +  + F+  SGL
Sbjct: 662  LAINEAVDIGSWKPICISRNGPRLSHLLFADDVLLFSKAKKSQLRFITNLFDVFSRASGL 721

Query: 397  KINVAKSKVFFSS 359
            KIN++KS+  FSS
Sbjct: 722  KINISKSRALFSS 734



 Score =  142 bits (359), Expect = 2e-32
 Identities = 69/133 (51%), Positives = 93/133 (69%)
 Frame = -2

Query: 399  LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
            LK+ +   ++ F      +K+  + S TGIR T SL KYLGFP+L+GR ++ D++F+ EK
Sbjct: 721  LKINISKSRALFSSGIPRAKIQQLTSITGIRSTPSLGKYLGFPILNGRAKKSDFDFIIEK 780

Query: 219  TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
               RLASWK+KLLNK GR+    SVL SIP+YYMQI WLPQS CN ID  + +FIWKG++
Sbjct: 781  MQTRLASWKSKLLNKPGRLALASSVLTSIPSYYMQIAWLPQSICNIIDHTTRHFIWKGST 840

Query: 39   TSGAHLVGCDKIT 1
             +G +LVG  KI+
Sbjct: 841  NTGINLVGWQKIS 853


>gb|PNX92852.1| hypothetical protein L195_g015995, partial [Trifolium pratense]
          Length = 664

 Score =  390 bits (1003), Expect = e-126
 Identities = 200/298 (67%), Positives = 226/298 (75%), Gaps = 7/298 (2%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDD-SICS 1289
            H KT+I+RKRNK          WC DD+TL +EA  ++KNLF S N +   D+DD  +  
Sbjct: 367  HTKTIIRRKRNKIHGLHLPNGIWCTDDSTLKDEAQYYFKNLFCSPNLSNINDIDDRQLAP 426

Query: 1288 KFE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISEA 1109
                     L +   K      L     F +PG DGFQ +FFKQYWHIVGDD+THL+S A
Sbjct: 427  TLNDEACHFLSKQVTKDEVTQALNQMHPFKAPGPDGFQGIFFKQYWHIVGDDVTHLVSVA 486

Query: 1108 FVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIVG 929
            F TG F  SLS TLIALIPKVDCP+NFKEFRPISLCNTIYKLITKI+VNRLRP L+QIVG
Sbjct: 487  FETGEFPQSLSETLIALIPKVDCPKNFKEFRPISLCNTIYKLITKILVNRLRPFLNQIVG 546

Query: 928  PFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLHH 749
            PFQSSFLPGKGT D+AIILQE IH+MR+SKRKKGDMVFKIDLEKAYDNV W+FL+FCL  
Sbjct: 547  PFQSSFLPGKGTTDNAIILQEVIHSMRKSKRKKGDMVFKIDLEKAYDNVSWEFLQFCLQQ 606

Query: 748  NGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQ 575
            NGFP IT KLIM+CV+SSSLSIIWNG RL  F PTRGL+QGDPLS YLFV+CME LSQ
Sbjct: 607  NGFPPITIKLIMYCVSSSSLSIIWNGCRLPCFTPTRGLRQGDPLSPYLFVLCMEVLSQ 664


>dbj|GAU20604.1| hypothetical protein TSUD_33400 [Trifolium subterraneum]
          Length = 1174

 Score =  402 bits (1032), Expect = e-125
 Identities = 206/373 (55%), Positives = 254/373 (68%), Gaps = 6/373 (1%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            HA+T+I+RKRNK          W  D ATL +EA +++KN FS    T      +     
Sbjct: 277  HAQTIIRRKRNKIHRLQLPNGVWTTDSATLQDEAQTYFKNFFSIAQPTHDRTFKEGSHPI 336

Query: 1285 FE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISEAF 1106
             +  G   L     K      L     F +PG DGFQ +FFKQYWHIVGDDI HL+  AF
Sbjct: 337  IDDTGITTLTCPITKAEVTATLNSMKPFKAPGPDGFQCIFFKQYWHIVGDDIFHLVKTAF 396

Query: 1105 VTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIVGP 926
             TG F+ ++S TLIALIPK+D P+ FK+FRPISLCN +YKLI K++V+RLRP+LD I+GP
Sbjct: 397  STGNFDHNISNTLIALIPKIDTPKTFKDFRPISLCNIVYKLIAKVLVHRLRPILDNIIGP 456

Query: 925  FQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLHHN 746
            FQSSFLPG+GT D+AI+LQE IH M+RSK KKG   FK+DLEKA+DNV WDFL+ CL   
Sbjct: 457  FQSSFLPGRGTSDNAIVLQEIIHFMKRSKNKKGYAAFKLDLEKAFDNVNWDFLQNCLFDF 516

Query: 745  GFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQKIL 566
            GFP IT +LIMHCVTSS+ SI+ NG +L  F PT GL+QG+PLS YLF+ICME LS  I 
Sbjct: 517  GFPEITIRLIMHCVTSSTYSILGNGNQLPQFKPTHGLRQGEPLSPYLFIICMEKLSIAIN 576

Query: 565  KSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKINV 386
              V    W P+ L++ GP LSHL FADDVLLF KA  SQ   I +   RF+  SGLKIN+
Sbjct: 577  NVVTQKNWDPINLTKQGPSLSHLLFADDVLLFTKAKNSQINFITELFERFSHASGLKINL 636

Query: 385  AKSKVFFSSSTKE 347
            +KS+VF+SS T +
Sbjct: 637  SKSRVFYSSGTTQ 649


>dbj|GAU49954.1| hypothetical protein TSUD_180180 [Trifolium subterraneum]
          Length = 968

 Score =  395 bits (1014), Expect = e-124
 Identities = 202/371 (54%), Positives = 256/371 (69%), Gaps = 9/371 (2%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            H +T+I+RKRN+          W  D   L  EA  +YKN F+S   +  +   +     
Sbjct: 129  HTQTIIRRKRNRIHRLQLPNGTWTTDSFVLQSEAHQYYKNFFNSNQSSQASPFYNGFHPT 188

Query: 1285 F--E*RGQALLDQTCDK-GGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLIS 1115
               E R   L   T D+       +KPY    +PG DGFQ +FFKQYWHIVGDDI +L+ 
Sbjct: 189  IDEEERQSLLRPVTKDEVSAALNSMKPYK---APGPDGFQCIFFKQYWHIVGDDIFNLVK 245

Query: 1114 EAFVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQI 935
             AF TG F+ ++S TLIALIPKVD P  FK+FRPISLCN +YK+ITK++V RLRP+LD I
Sbjct: 246  TAFHTGYFDPAISETLIALIPKVDPPTTFKDFRPISLCNIVYKIITKVLVLRLRPILDSI 305

Query: 934  VGPFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCL 755
            +GP QSSFLPG+GT D+AI+LQE IH MRRSK+KKG + FK+DLEKA+DNV W+FL+ CL
Sbjct: 306  IGPCQSSFLPGRGTSDNAIVLQEVIHYMRRSKKKKGFVAFKLDLEKAFDNVNWEFLKICL 365

Query: 754  HHNGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQ 575
            H  GFP  T +LIMHCVTSS+LS++WNG ++ +F P+ GL+QGDPLS YLF++CME LS 
Sbjct: 366  HDFGFPDDTIRLIMHCVTSSNLSLLWNGNKMPSFKPSHGLRQGDPLSPYLFILCMEKLSI 425

Query: 574  KILKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLK 395
             I  +V+   W P+ +  NGP LSHL FADDVLLF KA  SQ  LI D   RF+  SGLK
Sbjct: 426  AINDAVQHNAWTPIHILNNGPRLSHLLFADDVLLFTKAKYSQIRLIIDLFARFSQASGLK 485

Query: 394  INVAKSKVFFS 362
            IN++KS+ F+S
Sbjct: 486  INLSKSRAFYS 496



 Score =  136 bits (342), Expect = 3e-30
 Identities = 67/132 (50%), Positives = 88/132 (66%)
 Frame = -2

Query: 399 LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
           LK+ L   ++ +      +K++ + S + IR T SL+KYLGFP+L GR +  D+ F+ EK
Sbjct: 484 LKINLSKSRAFYSRGVPQAKINKLTSISSIRSTTSLDKYLGFPILKGRAKICDFHFIIEK 543

Query: 219 TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
              RLASWKNKLLNK GR+    SVL SIPTYYMQI WLPQ  C+ ID+ + NFIW+ ++
Sbjct: 544 MQARLASWKNKLLNKPGRLALASSVLTSIPTYYMQIAWLPQIICDSIDQTTRNFIWRDSN 603

Query: 39  TSGAHLVGCDKI 4
             G HLVG  KI
Sbjct: 604 NKGIHLVGWKKI 615


>gb|KYP32780.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]
          Length = 1123

 Score =  362 bits (929), Expect(2) = e-122
 Identities = 186/370 (50%), Positives = 249/370 (67%), Gaps = 6/370 (1%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            H +TVI+R+RN           WC D+  L  EA  ++KN+F  +  T  + +  ++ + 
Sbjct: 236  HTQTVIRRRRNHVSGLFLPNGEWCSDNNVLEHEASLYFKNIFCMREATGESIITPNMPTL 295

Query: 1285 FE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISEAF 1106
             +   + LL     K   F  L     F +PG DGFQ +FFK YWH+VGDD+ +LI+EAF
Sbjct: 296  SD-DNKNLLVAPVTKEEVFKALTGMKSFKAPGPDGFQPIFFKLYWHVVGDDVWNLINEAF 354

Query: 1105 VTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIVGP 926
             TG  ++ L+ TLI LIPKVD P ++K+FRPISLCN +YKLITK++VNRLR  +  I+ P
Sbjct: 355  QTGIIDTKLAETLIVLIPKVDAPLSYKDFRPISLCNVVYKLITKVLVNRLRVFIGNIMSP 414

Query: 925  FQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLHHN 746
             QSSF+PG+ T D+AIILQE +H M +SKRKKGD++FK+DLEKAYD + W+FL   L   
Sbjct: 415  LQSSFIPGRSTVDNAIILQEVLHFMNKSKRKKGDLIFKLDLEKAYDRIDWEFLNNVLLDF 474

Query: 745  GFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQKIL 566
            GFP IT +LIM+CV+SSSL ++WNG +     P RGL+QGDPLS YLFV+CME L   I 
Sbjct: 475  GFPDITCRLIMNCVSSSSLHLLWNGVKSAAIIPRRGLRQGDPLSPYLFVLCMEKLGLLIN 534

Query: 565  KSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKINV 386
            ++V D  W+P+++S+ GP +SHLFFADD LLF KA  SQ  L+   ++ F   SGLKINV
Sbjct: 535  QAVFDHRWQPIKISKEGPSISHLFFADDCLLFIKAHNSQVRLMQIIIDEFCTKSGLKINV 594

Query: 385  AKSKVFFSSS 356
             KS+ F S +
Sbjct: 595  EKSRAFASKT 604



 Score =  108 bits (270), Expect(2) = e-122
 Identities = 54/116 (46%), Positives = 81/116 (69%)
 Frame = -2

Query: 348 SSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEKTSQRLASWKNKLLNKAG 169
           S+K   I   + IR T +L KYLGFP+ +GR +R+ ++ + ++ S +LA+WK KLL+K G
Sbjct: 607 SAKKARIQGISNIRFT-TLGKYLGFPIFYGRPRREVFQPVMDRISAKLATWKGKLLSKPG 665

Query: 168 RVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNSTSGAHLVGCDKIT 1
           RVT   +V++SIPT++MQ+ W P   C+ +D+MS +FIWKG+S  G +LV   KIT
Sbjct: 666 RVTLANAVISSIPTFFMQLYWFPNYICSTLDQMSRDFIWKGSSGKGINLVAWTKIT 721


>gb|PNY05589.1| ribonuclease H [Trifolium pratense]
          Length = 1360

 Score =  398 bits (1022), Expect = e-122
 Identities = 202/376 (53%), Positives = 260/376 (69%), Gaps = 11/376 (2%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKAL------SFWCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            HA+T+I+RK+NK          W  D   L EEA   +KNLF++        +++     
Sbjct: 366  HAQTIIRRKKNKVHRIQLPNGIWTTDSVILQEEAQKIFKNLFTNNQPNQNRTLNEGTHPT 425

Query: 1285 FE*RGQALLDQTC-----DKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHL 1121
             +  G    + TC     +       +KPY    +PG DGFQ +FFKQYWHIVGDDI HL
Sbjct: 426  IDDFGS--FELTCPITKEEVTAALNSMKPYK---APGPDGFQCIFFKQYWHIVGDDIFHL 480

Query: 1120 ISEAFVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLD 941
            +  AF TG F+ ++S TLI+LIPKV+  + +K+FRPISLCN +YK+ITK++V+RLRP+L+
Sbjct: 481  VKIAFSTGYFDPNISNTLISLIPKVEPTKTYKDFRPISLCNIVYKIITKVLVHRLRPILE 540

Query: 940  QIVGPFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEF 761
            +I+GPFQSSFLPG+GT D+AI+LQE IH MRRSK+KKG + FK+DLEKA+DNV WDFLE 
Sbjct: 541  KIIGPFQSSFLPGRGTSDNAIVLQEIIHFMRRSKKKKGYVAFKLDLEKAFDNVNWDFLEN 600

Query: 760  CLHHNGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFL 581
            CLH  GFP IT +LIMHCVTS + SI+WNG ++  F PT GL+QGDPLS YLF+ICME L
Sbjct: 601  CLHDFGFPEITIRLIMHCVTSPTYSILWNGNQMPQFKPTHGLRQGDPLSPYLFIICMEKL 660

Query: 580  SQKILKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSG 401
            S  I  +V    W PV +S+ GP LSHL FADDVLLF KA  SQ   + +   RF+  SG
Sbjct: 661  SISINNAVLQKTWDPVHISKFGPKLSHLLFADDVLLFTKAKNSQIKFMTELFERFSHASG 720

Query: 400  LKINVAKSKVFFSSST 353
            LKIN++KS+ F+SS T
Sbjct: 721  LKINLSKSRAFYSSGT 736



 Score =  140 bits (354), Expect = 9e-32
 Identities = 68/133 (51%), Positives = 90/133 (67%)
 Frame = -2

Query: 399  LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
            LK+ L   ++ +       K++ + S +GIR T SLEKYLGFP+L GR ++ D+ F+ EK
Sbjct: 721  LKINLSKSRAFYSSGTPRDKINRLTSLSGIRNTTSLEKYLGFPILKGRAKKSDFLFIIEK 780

Query: 219  TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
               RLASWKNKLLNK GR+    SVL+SIP YYMQI WLPQS C+ ID+ + NFIW+ ++
Sbjct: 781  MQSRLASWKNKLLNKPGRLALASSVLSSIPNYYMQIAWLPQSICDGIDQTTRNFIWRDSN 840

Query: 39   TSGAHLVGCDKIT 1
              G HLV   KI+
Sbjct: 841  NKGTHLVSWKKIS 853


>dbj|GAU51664.1| hypothetical protein TSUD_268670 [Trifolium subterraneum]
          Length = 1231

 Score =  395 bits (1015), Expect = e-122
 Identities = 201/374 (53%), Positives = 257/374 (68%), Gaps = 9/374 (2%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKAL------SFWCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            HA+T+I+RKRN+          W  D + L +EA  +YKN+F S     T          
Sbjct: 393  HAQTIIRRKRNRIHRLQLPNGIWTSDSSILQQEAQHYYKNVFYSNQHNHTPSFTTGSHPI 452

Query: 1285 FE*RGQALLDQTCDKGG---GFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLIS 1115
             +  G+  L +   K         +KPY    +PG DGFQ +FFKQYWHIVGDDI +L+ 
Sbjct: 453  IDDLGKTSLTRPVTKEEVTIALNSMKPYK---APGPDGFQCIFFKQYWHIVGDDIFNLVK 509

Query: 1114 EAFVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQI 935
             AF +G F+ ++S TLIALIPK+D P  FK+FRPISLCN +YK+ITK++V+RLRPLLD I
Sbjct: 510  SAFHSGYFDPTISETLIALIPKIDPPSTFKDFRPISLCNIVYKIITKVLVHRLRPLLDSI 569

Query: 934  VGPFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCL 755
            +GP+QSSFL G+GT ++AI+LQE IH MRRSK+KKG + FK+DLEKA+DNV W FL+ CL
Sbjct: 570  IGPYQSSFLLGRGTSNNAIVLQEIIHFMRRSKKKKGYVAFKLDLEKAFDNVNWSFLQSCL 629

Query: 754  HHNGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQ 575
               GFP ITT+LIMHCVTSS+ SI+WNG ++  F PT GL+QGDPLS YLF++CME LS 
Sbjct: 630  QDFGFPDITTQLIMHCVTSSTYSILWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSV 689

Query: 574  KILKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLK 395
             I  +V+  +W PV +S NGP LSHL FADDVLLF KA  S    I +   RF+  SGLK
Sbjct: 690  AINDAVQQRHWDPVHISDNGPHLSHLLFADDVLLFTKAKNSHIRFITNLFERFSNASGLK 749

Query: 394  INVAKSKVFFSSST 353
            IN++KS+ F+S  T
Sbjct: 750  INLSKSRAFYSIGT 763



 Score =  101 bits (251), Expect = 9e-19
 Identities = 50/102 (49%), Positives = 68/102 (66%), Gaps = 4/102 (3%)
 Frame = -2

Query: 399  LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
            LK+ L   ++ + +   S+K+  + S +GIR T SL+KYLGFP+L GR +R D+ F+  K
Sbjct: 748  LKINLSKSRAFYSIGTPSTKITKLTSISGIRSTTSLDKYLGFPILKGRAKRSDFHFIINK 807

Query: 219  TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQ----IGW 106
               RLASWKN+LLNK GR+    SVL+SIP YYMQ    +GW
Sbjct: 808  MQSRLASWKNRLLNKPGRLALASSVLSSIPNYYMQGIHLVGW 849


>gb|PNX92211.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1462

 Score =  398 bits (1022), Expect = e-122
 Identities = 202/376 (53%), Positives = 260/376 (69%), Gaps = 11/376 (2%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKAL------SFWCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            HA+T+I+RK+NK          W  D   L EEA   +KNLF++        +++     
Sbjct: 581  HAQTIIRRKKNKVHRIQLPNGIWTTDSVILQEEAQKIFKNLFTNNQPNQNRTLNEGTHPT 640

Query: 1285 FE*RGQALLDQTC-----DKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHL 1121
             +  G    + TC     +       +KPY    +PG DGFQ +FFKQYWHIVGDDI HL
Sbjct: 641  IDDFGS--FELTCPITKEEVTAALNSMKPYK---APGPDGFQCIFFKQYWHIVGDDIFHL 695

Query: 1120 ISEAFVTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLD 941
            +  AF TG F+ ++S TLI+LIPKV+  + +K+FRPISLCN +YK+ITK++V+RLRP+L+
Sbjct: 696  VKIAFSTGYFDPNISNTLISLIPKVEPTKTYKDFRPISLCNIVYKIITKVLVHRLRPILE 755

Query: 940  QIVGPFQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEF 761
            +I+GPFQSSFLPG+GT D+AI+LQE IH MRRSK+KKG + FK+DLEKA+DNV WDFLE 
Sbjct: 756  KIIGPFQSSFLPGRGTSDNAIVLQEIIHFMRRSKKKKGYVAFKLDLEKAFDNVNWDFLEN 815

Query: 760  CLHHNGFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFL 581
            CLH  GFP IT +LIMHCVTS + SI+WNG ++  F PT GL+QGDPLS YLF+ICME L
Sbjct: 816  CLHDFGFPEITIRLIMHCVTSPTYSILWNGNQMPQFKPTHGLRQGDPLSPYLFIICMEKL 875

Query: 580  SQKILKSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSG 401
            S  I  +V    W PV +S+ GP LSHL FADDVLLF KA  SQ   + +   RF+  SG
Sbjct: 876  SISINNAVLQKTWDPVHISKFGPKLSHLLFADDVLLFTKAKNSQIKFMTELFERFSHASG 935

Query: 400  LKINVAKSKVFFSSST 353
            LKIN++KS+ F+SS T
Sbjct: 936  LKINLSKSRAFYSSGT 951



 Score =  140 bits (354), Expect = 9e-32
 Identities = 68/133 (51%), Positives = 90/133 (67%)
 Frame = -2

Query: 399  LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
            LK+ L   ++ +       K++ + S +GIR T SLEKYLGFP+L GR ++ D+ F+ EK
Sbjct: 936  LKINLSKSRAFYSSGTPRDKINRLTSLSGIRNTTSLEKYLGFPILKGRAKKSDFLFIIEK 995

Query: 219  TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
               RLASWKNKLLNK GR+    SVL+SIP YYMQI WLPQS C+ ID+ + NFIW+ ++
Sbjct: 996  MQSRLASWKNKLLNKPGRLALASSVLSSIPNYYMQIAWLPQSICDGIDQTTRNFIWRDSN 1055

Query: 39   TSGAHLVGCDKIT 1
              G HLV   KI+
Sbjct: 1056 NKGTHLVSWKKIS 1068


>gb|PNY14872.1| ribonuclease H, partial [Trifolium pratense]
          Length = 1396

 Score =  346 bits (888), Expect(2) = e-121
 Identities = 178/364 (48%), Positives = 237/364 (65%), Gaps = 6/364 (1%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            HA+++I+RKRNK          WC D   +  EAL+F+K LF + NQ    + +    + 
Sbjct: 690  HAQSIIRRKRNKIHGIRLSSGDWCTDPEVMRSEALNFFKELFCT-NQNVVLNNNVPYVAT 748

Query: 1285 FE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISEAF 1106
             E    A L +   K   F  L     + +PG DGFQ +FFK +W  +GDD+   +  AF
Sbjct: 749  LEDSAAAELVKPVSKKEVFDALMSMKSYKAPGPDGFQPIFFKLFWEDIGDDLWQFVKLAF 808

Query: 1105 VTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIVGP 926
             TG ++  +  TLI L+PK +    FK+FRPISLCN  YKLI+KI+V+RLRP LD I+ P
Sbjct: 809  ETGKYDPKICETLIVLLPKGENQSTFKDFRPISLCNVTYKLISKIIVSRLRPFLDDIISP 868

Query: 925  FQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLHHN 746
            FQ+SF+PG+ T D+AI+LQE +H MR+SK+K GDMVFK+DLEKAYD V W FL   L   
Sbjct: 869  FQNSFIPGRSTKDNAIVLQEVLHVMRKSKKKNGDMVFKLDLEKAYDRVNWTFLRDTLTKF 928

Query: 745  GFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQKIL 566
             FP     LIM  +++SS SI+WNG + + F P RGL+QGDPLS YLFV+CME L   + 
Sbjct: 929  NFPPKIISLIMFGISASSNSILWNGSKTEAFTPMRGLRQGDPLSPYLFVLCMERLGMMVS 988

Query: 565  KSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKINV 386
              V  G WKP++L +NG  +SHLFFADDVLLFAKA+ SQA ++ + L+ F  +SGLKI++
Sbjct: 989  NRVSTGDWKPMQLVKNGTKISHLFFADDVLLFAKASPSQASIVKEVLDLFCSMSGLKISL 1048

Query: 385  AKSK 374
             KSK
Sbjct: 1049 GKSK 1052



 Score =  120 bits (301), Expect(2) = e-121
 Identities = 56/112 (50%), Positives = 75/112 (66%)
 Frame = -2

Query: 336  DLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEKTSQRLASWKNKLLNKAGRVTW 157
            D I + T I  T   EKYLGF MLHGR+++ D+  + ++ S +LASWK++LLNK GRV  
Sbjct: 1065 DNIFTTTQIHATSRFEKYLGFKMLHGRIRKLDFVDVYDRVSTKLASWKSRLLNKPGRVVL 1124

Query: 156  VKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNSTSGAHLVGCDKIT 1
              SV++S+P Y+MQI WLPQ  C+ +D+    FIWKG    G HLV  +KIT
Sbjct: 1125 ANSVISSLPAYHMQINWLPQGMCDDLDRTVRRFIWKGTGDVGMHLVSWNKIT 1176


>gb|KYP67620.1| LINE-1 reverse transcriptase isogeny [Cajanus cajan]
          Length = 756

 Score =  354 bits (909), Expect(2) = e-120
 Identities = 179/348 (51%), Positives = 239/348 (68%)
 Frame = -1

Query: 1399 WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSKFE*RGQALLDQTCDKGGGFPRL 1220
            WC D+  L  EA  ++KN+F  +  T  + +  ++ +  +   + LL     K   F  L
Sbjct: 234  WCSDNNVLEHEASLYFKNIFCMREATGESIITPNMPTLSD-DNKNLLVAPVTKEEVFKAL 292

Query: 1219 KPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISEAFVTGTFNSSLSVTLIALIPKVDC 1040
                 F +PG DGFQ +FFK YWH+VGDD+ +LI+EAF TG  ++ L+ TLI LIPKVD 
Sbjct: 293  TGMKSFKAPGPDGFQPIFFKLYWHVVGDDVWNLINEAFQTGIIDTKLAETLIVLIPKVDA 352

Query: 1039 PQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIVGPFQSSFLPGKGTCDDAIILQEAI 860
            P ++K+FRPISLCN +YKLITK++VNRLR  +  I+ P QSSF+PG+ T D+AIILQE +
Sbjct: 353  PLSYKDFRPISLCNVVYKLITKVLVNRLRVFIGNIMSPLQSSFIPGRSTVDNAIILQEVL 412

Query: 859  HTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLHHNGFPTITTKLIMHCVTSSSLSII 680
            H M +SKRKKGD++FK+DLEKAYD + W+FL   L   GFP IT +LIM+CV+SSSL ++
Sbjct: 413  HFMNKSKRKKGDLIFKLDLEKAYDRIDWEFLNNVLLDFGFPDITCRLIMNCVSSSSLHLL 472

Query: 679  WNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQKILKSVEDGYWKPVRLSRNGPPLSH 500
            WNG +     P RGL+QGDPLS YLFV+CME L   I ++V D  W+P+++S+ GP +SH
Sbjct: 473  WNGVKSAAIIPRRGLRQGDPLSPYLFVLCMEKLGLLINQAVFDHRWQPIKISKEGPSISH 532

Query: 499  LFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKINVAKSKVFFSSS 356
            LFFADD LLF KA  SQ  L+   ++ F   SGLKINV KS+ F S +
Sbjct: 533  LFFADDCLLFIKARNSQVRLMQIIIDEFCTKSGLKINVEKSRAFASKT 580



 Score =  108 bits (270), Expect(2) = e-120
 Identities = 54/116 (46%), Positives = 81/116 (69%)
 Frame = -2

Query: 348 SSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEKTSQRLASWKNKLLNKAG 169
           S+K   I   + IR T +L KYLGFP+ +GR +R+ ++ + ++ S +LA+WK KLL+K G
Sbjct: 583 SAKKARIQGISNIRFT-TLGKYLGFPIFYGRPRREVFQPVMDRISAKLATWKGKLLSKPG 641

Query: 168 RVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNSTSGAHLVGCDKIT 1
           RVT   +V++SIPT++MQ+ W P   C+ +D+MS +FIWKG+S  G +LV   KIT
Sbjct: 642 RVTLANAVISSIPTFFMQLYWFPNYICSTLDQMSRDFIWKGSSGKGINLVAWTKIT 697


>gb|PNY14401.1| ribonuclease H [Trifolium pratense]
          Length = 1359

 Score =  390 bits (1003), Expect = e-119
 Identities = 200/373 (53%), Positives = 251/373 (67%), Gaps = 6/373 (1%)
 Frame = -1

Query: 1447 HAKTVIQRKRNKALSF------WCDDDATLGEEALSFYKNLFSSQNQTFTADMDDSICSK 1286
            HA+T+I+R+RNK          W  D ATL +EA  ++KN FSS          +     
Sbjct: 366  HAQTIIRRRRNKIHRLQLPNGTWSTDCATLQDEAQLYFKNFFSSTQPVHNRIFREGSHPI 425

Query: 1285 FE*RGQALLDQTCDKGGGFPRLKPYAFF*SPGADGFQTMFFKQYWHIVGDDITHLISEAF 1106
             +  G   L     K      L     F +PG DGF  +FFKQYWHIVGDDI HL+  AF
Sbjct: 426  IDDAGITALTCPITKDEVTAALNSMKPFKAPGPDGFHCIFFKQYWHIVGDDIFHLVKTAF 485

Query: 1105 VTGTFNSSLSVTLIALIPKVDCPQNFKEFRPISLCNTIYKLITKIMVNRLRPLLDQIVGP 926
             +G F+ ++S TLIALIPK+D P+ FK+FRPISLCN +YKLITK++V+RLRP LD I+GP
Sbjct: 486  SSGYFDHNISNTLIALIPKIDTPKTFKDFRPISLCNIVYKLITKVLVHRLRPFLDNIIGP 545

Query: 925  FQSSFLPGKGTCDDAIILQEAIHTMRRSKRKKGDMVFKIDLEKAYDNVRWDFLEFCLHHN 746
            FQSSFLPG+GT D+AI+LQE IH M+RS+ K G   FK+DLEKA+DNV WDFL  CL   
Sbjct: 546  FQSSFLPGRGTSDNAIVLQEIIHFMKRSRNKNGYAAFKLDLEKAFDNVNWDFLRNCLIDF 605

Query: 745  GFPTITTKLIMHCVTSSSLSIIWNGKRLQNFNPTRGLQQGDPLSLYLFVICMEFLSQKIL 566
            GFP IT +LIMHCVTS + SI+WNG +L  F PT GL+QGDPLS YLF+ICME LS  I 
Sbjct: 606  GFPDITVRLIMHCVTSPTYSILWNGTQLPPFTPTHGLRQGDPLSPYLFIICMEKLSVAIN 665

Query: 565  KSVEDGYWKPVRLSRNGPPLSHLFFADDVLLFAKATVSQAVLIADSLNRFAVLSGLKINV 386
             +V    W+P+ ++ +GP LSHL FADDVLLF KA  SQ   I +   RF+  SGLKIN+
Sbjct: 666  NAVIQRNWEPIAITTHGPQLSHLLFADDVLLFTKAKNSQINFITELFERFSHASGLKINL 725

Query: 385  AKSKVFFSSSTKE 347
            +KS+ ++SS T +
Sbjct: 726  SKSRAYYSSGTPQ 738



 Score =  144 bits (362), Expect = 8e-33
 Identities = 69/133 (51%), Positives = 95/133 (71%)
 Frame = -2

Query: 399  LKLMLPSQKSSFLLQPKSSKMDLIVSNTGIRRTLSLEKYLGFPMLHGRLQRKDYEFLEEK 220
            LK+ L   ++ +       K+  + S +GIR TLSLEKYLGFP+L GR ++ D+ F+ EK
Sbjct: 721  LKINLSKSRAYYSSGTPQDKIHRLTSLSGIRNTLSLEKYLGFPILQGRAKKTDFLFIFEK 780

Query: 219  TSQRLASWKNKLLNKAGRVTWVKSVLNSIPTYYMQIGWLPQSTCNFIDKMSMNFIWKGNS 40
              +RLASWKNK+LNK+GR+    SVL+SIPTYYMQI WLPQS C+ ID+++ NF+WK ++
Sbjct: 781  MQRRLASWKNKILNKSGRLALASSVLSSIPTYYMQITWLPQSICDGIDQITRNFLWKDSN 840

Query: 39   TSGAHLVGCDKIT 1
              G +LVG  KI+
Sbjct: 841  KKGINLVGWKKIS 853