BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00030775
         (408 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposo...   134   5e-34
gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposo...   130   9e-33
gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposo...   126   4e-31
gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinen...   124   4e-30
gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]   123   6e-30
gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]   123   6e-30
gb|KYP42102.1| Retrovirus-related Pol polyprotein from transposo...   121   2e-29
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   121   3e-29
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   121   3e-29
emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]   121   4e-29
gb|PNX85109.1| retrovirus-related Pol polyprotein from transposo...   119   5e-29
gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]   114   2e-28
gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinen...   118   3e-28
emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]     117   6e-28
gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinen...   117   1e-27
dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subt...   117   1e-27
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]   116   2e-27
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            116   2e-27
gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]            115   3e-27
dbj|GAU13723.1| hypothetical protein TSUD_348270 [Trifolium subt...   115   4e-27

>gb|KYP43087.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  134 bits (336), Expect = 5e-34
 Identities = 70/137 (51%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  E+GLT++F+S +C++Y P++GL+ E+ MT+NRMF L A  + K    
Sbjct: 54  ELKNNLLSIGQLQEKGLTVMFQSGTCKLYHPDKGLILETNMTTNRMFILFAQSATK---- 109

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLP-KLSGEKKVCADCMKGKQH 52
            +SC + + +D+S LW   Y H           K MVRGLP  LS  +KVC DCMKGKQH
Sbjct: 110 KDSCFHISTQDLSSLWHRRYAHLSHKGLRILQSKGMVRGLPSSLSTTEKVCEDCMKGKQH 169

Query: 51  RDSFPKKGQSRASSKLE 1
           RD  PKK Q RA  KLE
Sbjct: 170 RDPIPKKSQWRAKQKLE 186


>gb|KYP38784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 560

 Score =  130 bits (327), Expect = 9e-33
 Identities = 65/136 (47%), Positives = 87/136 (63%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  E+GL++L ++ SC+IY PE+GL+ ++ MT+NRMF LTA P       
Sbjct: 331 ELKNNLLSIGQLQEKGLSILIQNGSCKIYHPEKGLVIQTEMTTNRMFVLTAVPM----PQ 386

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
             +CL+TT +++++LW C Y H           K+MV GLP L     VC  CM GKQHR
Sbjct: 387 KPTCLHTTVQEIAHLWHCRYGHLSHKGLRTLQYKKMVHGLPPLKSPTDVCTVCMIGKQHR 446

Query: 48  DSFPKKGQSRASSKLE 1
           D  PKK   RA+ KL+
Sbjct: 447 DPIPKKANWRATQKLQ 462


>gb|KYP44457.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 690

 Score =  126 bits (317), Expect = 4e-31
 Identities = 67/137 (48%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  E+GLT++F+S +C++Y P++GL+ E+ MT+N MF L A  + K    
Sbjct: 362 ELKNNLLSIGQLQEKGLTVMFQSGTCKLYHPDKGLILETNMTTNIMFILFAQSATK---- 417

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLP-KLSGEKKVCADCMKGKQH 52
            +SC + + +D+S LW   Y H           K MVRGLP  LS  + VC DC KGKQH
Sbjct: 418 KDSCFHISTQDLSSLWHHRYAHLSHKGLRILQSKGMVRGLPSSLSTTENVCEDCTKGKQH 477

Query: 51  RDSFPKKGQSRASSKLE 1
           RD  PKK Q RA  KLE
Sbjct: 478 RDPIPKKSQWRAKQKLE 494


>gb|PRQ33299.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1363

 Score =  124 bits (310), Expect = 4e-30
 Identities = 63/138 (45%), Positives = 86/138 (62%), Gaps = 2/138 (1%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTA--PPSLKGN 235
           ELKNNLLS+GQ  ERGL +L     C+IY P++GL+ +S MT+NRMF L A   P+L  +
Sbjct: 418 ELKNNLLSIGQLQERGLAILIHYGKCKIYHPQKGLIIQSEMTANRMFVLVARIEPTLSDS 477

Query: 234 HSDNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQ 55
           + +  C  TT +D+++LW C   H           K+MV GLP+L     VC DC+KGKQ
Sbjct: 478 NQE-ICFNTTTQDLTHLWHCRLGHISNTGLQTLQRKKMVHGLPQLPALDVVCVDCLKGKQ 536

Query: 54  HRDSFPKKGQSRASSKLE 1
           HR+  PK+   RA+ +LE
Sbjct: 537 HREPIPKRSTWRATQRLE 554


>gb|PNX96089.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1062

 Score =  123 bits (309), Expect = 6e-30
 Identities = 61/136 (44%), Positives = 83/136 (61%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  E+GLT++FK   CR+Y  ERG++ + +MT+NRM+ +     +     
Sbjct: 383 ELKNNLLSIGQLQEKGLTVVFKEDMCRVYHQERGVIMQCKMTANRMYVIMVDVVIP---- 438

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
             +C   T+EDV+YLW C Y +           K MVRGLPKL     VC+DCM GKQHR
Sbjct: 439 --TCFKVTNEDVTYLWHCRYGYLSQKGLKILEQKNMVRGLPKLQDSSNVCSDCMIGKQHR 496

Query: 48  DSFPKKGQSRASSKLE 1
           + F K    RA+ +L+
Sbjct: 497 EPFLKVSTRRATKRLQ 512


>gb|PNX96091.1| retrotransposon-related protein [Trifolium pratense]
          Length = 1326

 Score =  123 bits (309), Expect = 6e-30
 Identities = 58/136 (42%), Positives = 82/136 (60%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           EL+NNLLS+GQ  E+GL +L K   C+I+ PE+GL+ ++ M++NRMF L +   +     
Sbjct: 355 ELRNNLLSIGQLQEKGLAILIKGGMCKIFHPEKGLIIQTNMSTNRMFTLRSQAQVSPQAQ 414

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
            + C +T  +D+S+LW   Y H           K MVRGLP+ S    +C +C+ GKQHR
Sbjct: 415 SDQCFHTKAQDLSHLWHRRYGHLSYKGLRTLLYKNMVRGLPQFSISSVICTNCINGKQHR 474

Query: 48  DSFPKKGQSRASSKLE 1
           D  PKK   RA+ KLE
Sbjct: 475 DPIPKKSNWRATQKLE 490


>gb|KYP42102.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 538

 Score =  121 bits (303), Expect = 2e-29
 Identities = 63/139 (45%), Positives = 85/139 (61%), Gaps = 3/139 (2%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMF---KLTAPPSLKG 238
           ELKNNLLSLGQ  E+GL++LF+   C+IY P++GL+ ++ M +NRMF    ++ P S   
Sbjct: 360 ELKNNLLSLGQLQEKGLSILFQQGHCKIYHPDKGLIMKANMFANRMFILHSISLPIS--- 416

Query: 237 NHSDNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGK 58
               ++C     EDV++LW C + H           KEMV+GLP L    K+C DC+ GK
Sbjct: 417 ----STCFKIATEDVAHLWHCRFGHLSFKGLQTLQQKEMVKGLPLLKSPSKLCKDCIAGK 472

Query: 57  QHRDSFPKKGQSRASSKLE 1
           QHRDSFP K   RAS  L+
Sbjct: 473 QHRDSFPIKSSWRASQILQ 491


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  121 bits (304), Expect = 3e-29
 Identities = 58/136 (42%), Positives = 85/136 (62%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  E+G+T+L ++  C+IY P +GL+ +++M++NRMF + A    + +  
Sbjct: 81  ELKNNLLSIGQLQEKGVTILIRNGMCQIYHPRKGLIMQTKMSANRMFVIRANMLPQAS-- 138

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
             +C  T  ED ++LW C Y H           ++MV+GLP      K+C DCM GKQHR
Sbjct: 139 --ACFQTVSEDNTHLWHCRYGHLSFKGLRTLQYRKMVKGLPDFKMSSKLCKDCMVGKQHR 196

Query: 48  DSFPKKGQSRASSKLE 1
           +S PKK   RAS +L+
Sbjct: 197 ESIPKKSMWRASHRLQ 212


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  121 bits (304), Expect = 3e-29
 Identities = 58/136 (42%), Positives = 85/136 (62%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  E+G+T+L ++  C+IY P +GL+ +++M++NRMF + A    + +  
Sbjct: 362 ELKNNLLSIGQLQEKGVTILIRNGMCQIYHPRKGLIMQTKMSANRMFVIRANMLPQAS-- 419

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
             +C  T  ED ++LW C Y H           ++MV+GLP      K+C DCM GKQHR
Sbjct: 420 --ACFQTVSEDNTHLWHCRYGHLSFKGLRSLQYRKMVKGLPDFKMSSKLCKDCMVGKQHR 477

Query: 48  DSFPKKGQSRASSKLE 1
           +S PKK   RAS +L+
Sbjct: 478 ESIPKKSMWRASHRLQ 493


>emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]
          Length = 2408

 Score =  121 bits (303), Expect = 4e-29
 Identities = 61/136 (44%), Positives = 84/136 (61%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  ERG+ +L +   CR+Y P++GL+ ++ M++ RMF L+A    K    
Sbjct: 300 ELKNNLLSVGQLQERGVAILIQHGVCRVYHPKKGLIMQTAMSTKRMFILSARILSKAP-- 357

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
             +C  T  ED ++LW C Y H           K+MVRGLP+L    K+C DCM GKQHR
Sbjct: 358 --TCFQTILEDNTHLWHCRYGHLSFKGLRTLQYKQMVRGLPQLKAPSKICTDCMVGKQHR 415

Query: 48  DSFPKKGQSRASSKLE 1
           D+ PK+   RAS +L+
Sbjct: 416 DAIPKRSLWRASQRLQ 431


>gb|PNX85109.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Trifolium pratense]
          Length = 488

 Score =  119 bits (299), Expect = 5e-29
 Identities = 58/132 (43%), Positives = 79/132 (59%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           EL+NNLLS+GQ  E+GL +L K  SC+I+ PE+GL+ ++ M++NRMF L           
Sbjct: 356 ELQNNLLSIGQLQEKGLAILIKGGSCKIFHPEKGLMIQTNMSANRMFILLPQTQASSQAQ 415

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
            + C +T  +D+S+LW   Y H           K MVRGLP+LS     C DC+ GKQHR
Sbjct: 416 FDQCFHTKAQDLSHLWHRRYGHLSYKGLKTLLYKNMVRGLPQLSISTVTCTDCINGKQHR 475

Query: 48  DSFPKKGQSRAS 13
           DS P+K   RA+
Sbjct: 476 DSIPRKSNWRAT 487


>gb|PNX61303.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 298

 Score =  114 bits (286), Expect = 2e-28
 Identities = 56/135 (41%), Positives = 78/135 (57%)
 Frame = -1

Query: 405 LKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHSD 226
           LKNNLLS+GQ  ++ LT++F   +C+I+  E+GL+  + MT+NRM+ L AP  +      
Sbjct: 29  LKNNLLSIGQLQQKNLTIVFSKNTCKIFHEEKGLIISTPMTANRMYVLLAPVMMP----- 83

Query: 225 NSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHRD 46
             CL    ED+ ++W C Y H           + MV+GLP L    ++C DC+  K HRD
Sbjct: 84  -QCLVAKHEDIEHIWHCRYGHLNFKGLVTLAKRTMVKGLPILKDSAELCPDCVISKHHRD 142

Query: 45  SFPKKGQSRASSKLE 1
           S PK    RASSKLE
Sbjct: 143 SIPKTASWRASSKLE 157


>gb|PRQ17740.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1302

 Score =  118 bits (296), Expect = 3e-28
 Identities = 57/136 (41%), Positives = 83/136 (61%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  E+G+ +L ++  C+IY P +GL+ +++M++NRMF + A    + +  
Sbjct: 360 ELKNNLLSIGQLQEKGVAILIQNGMCQIYHPRKGLIMQTKMSANRMFVILANMLPQAS-- 417

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
             +C  T  ED ++LW C Y H           + MV+GLP      K+C DCM GKQHR
Sbjct: 418 --ACFQTVSEDNTHLWHCRYGHLSFKGLKTLQYRNMVKGLPDFKMPSKLCKDCMVGKQHR 475

Query: 48  DSFPKKGQSRASSKLE 1
           +S PKK   RAS +L+
Sbjct: 476 ESIPKKSMWRASHRLQ 491


>emb|CBI37296.3| unnamed protein product, partial [Vitis vinifera]
          Length = 3048

 Score =  117 bits (294), Expect = 6e-28
 Identities = 57/136 (41%), Positives = 81/136 (59%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  E+GLT+LF+   C+++  ++GL+ +++M+SNRMF L A         
Sbjct: 383 ELKNNLLSIGQLQEKGLTILFQHGKCKVFHSQKGLIMDTKMSSNRMFMLYA----LSQPI 438

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
            ++C  T  ED+  LW C Y H           ++MV GLP+     K+C DC+ GKQHR
Sbjct: 439 SSTCFNTVTEDILQLWHCRYGHLSFQGLKTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHR 498

Query: 48  DSFPKKGQSRASSKLE 1
            S PKK   RA+  L+
Sbjct: 499 SSIPKKSNWRAAEILQ 514


>gb|PRQ38021.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 719

 Score =  117 bits (292), Expect = 1e-27
 Identities = 56/136 (41%), Positives = 85/136 (62%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           EL+NNLLS+GQ  E+GL +L +   C+IY  ++GL+ ++ MT+NRMF L A   +     
Sbjct: 372 ELRNNLLSIGQLQEKGLAILIQHGVCKIYHSKKGLIMQTPMTANRMFVLLANVVVT---D 428

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
            ++C+  + +D+S+LW C Y H           ++MV+GLP++    +VC DC+ GKQ R
Sbjct: 429 FSTCMQASSDDLSHLWHCRYSHLNYKGLKTLHYRKMVKGLPQIKASARVCHDCLVGKQSR 488

Query: 48  DSFPKKGQSRASSKLE 1
           DS PK  Q RAS +L+
Sbjct: 489 DSIPKSSQWRASQRLQ 504


>dbj|GAU51371.1| hypothetical protein TSUD_247260 [Trifolium subterraneum]
          Length = 1980

 Score =  117 bits (292), Expect = 1e-27
 Identities = 60/135 (44%), Positives = 79/135 (58%)
 Frame = -1

Query: 405 LKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHSD 226
           LKNNLLS+GQ  ERGL +L +S  CRIY   +GL+F++ MT+NRMF L +        + 
Sbjct: 359 LKNNLLSVGQLQERGLAVLMQSNECRIYHHTKGLVFQTNMTANRMFVLLSSTQSIKKENK 418

Query: 225 NSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHRD 46
             C   T +DV++LW   + H           K MVRGLP  S  + VC +C+KGKQHRD
Sbjct: 419 EECFQVTTDDVAHLWHRRFGHLSYKGLKTLQTKNMVRGLPSFSVGEIVCTNCLKGKQHRD 478

Query: 45  SFPKKGQSRASSKLE 1
              ++   RAS KLE
Sbjct: 479 VISRRSTWRASEKLE 493


>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
          Length = 1265

 Score =  116 bits (291), Expect = 2e-27
 Identities = 61/135 (45%), Positives = 81/135 (60%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  E+GLT+LF+S  C+++ PERG++ E +M+SNRMF L A         
Sbjct: 342 ELKNNLLSIGQLQEKGLTILFQSGKCKVFHPERGVITEMKMSSNRMFMLHA----ISQPI 397

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
            ++C     ED+ +LW C Y H           K+MV GLP+L    ++C DC+ GKQ R
Sbjct: 398 ASTCFNAITEDIVHLWHCRYGHLSFKGLKTLQQKKMVNGLPQLKSPLRLCKDCLVGKQQR 457

Query: 48  DSFPKKGQSRASSKL 4
            SFP K   RAS  L
Sbjct: 458 YSFPWKSTWRASQIL 472


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  116 bits (291), Expect = 2e-27
 Identities = 61/136 (44%), Positives = 83/136 (61%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           ELKNNLLS+GQ  ++GL++L +   C IY P +GL+ E+ M+ N+MF L A  S+  N S
Sbjct: 363 ELKNNLLSIGQLQDKGLSILIQHGKCMIYHPTKGLIMETIMSGNKMFCLVA--SMMPNES 420

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
             +C     E+ SYLW C + H           K+MV GLP +   KK+C +C+ GKQHR
Sbjct: 421 --TCFQNVSENESYLWHCRFGHLSYQGLRTLFYKKMVNGLPSIQIPKKLCTECLIGKQHR 478

Query: 48  DSFPKKGQSRASSKLE 1
           DS  KK   RAS+KL+
Sbjct: 479 DSMSKKSLWRASNKLQ 494


>gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]
          Length = 1324

 Score =  115 bits (289), Expect = 3e-27
 Identities = 58/135 (42%), Positives = 83/135 (61%)
 Frame = -1

Query: 405 LKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHSD 226
           LKNNLLS+GQ  ++ +T++FK   C+++  +RGL+  +RMT+NRM+ ++AP  L      
Sbjct: 362 LKNNLLSIGQLQQKDVTIVFKDDLCKVFHEQRGLIMTTRMTANRMYVISAPVILP----- 416

Query: 225 NSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHRD 46
             CL T  +  S+LW C Y H           + MV+GLP+L   +  C+DCM GKQHRD
Sbjct: 417 -MCLKTEKQVNSHLWHCRYGHLSFKGLNTLVKRNMVKGLPQLQEIETNCSDCMIGKQHRD 475

Query: 45  SFPKKGQSRASSKLE 1
           S PK+   RA+ KLE
Sbjct: 476 SIPKQANWRATKKLE 490


>dbj|GAU13723.1| hypothetical protein TSUD_348270 [Trifolium subterraneum]
          Length = 1117

 Score =  115 bits (288), Expect = 4e-27
 Identities = 56/136 (41%), Positives = 82/136 (60%)
 Frame = -1

Query: 408 ELKNNLLSLGQFNERGLTLLFKSYSCRIYRPERGLLFESRMTSNRMFKLTAPPSLKGNHS 229
           +LKNNLLS+GQ  ++ LT++F    C+I+   +GL+  ++MT NRM+ + AP  L     
Sbjct: 357 DLKNNLLSIGQLQQKNLTIVFSKDVCKIFHEGKGLIVTTQMTVNRMYIILAPVMLP---- 412

Query: 228 DNSCLYTTDEDVSYLWPCSYVHXXXXXXXXXXXKEMVRGLPKLSGEKKVCADCMKGKQHR 49
             +C   T++D  +LW C Y H           +EMV+GLP +   + VC+DC+  KQHR
Sbjct: 413 --TCFKVTNKDEGHLWHCRYGHLSFKGLNTLAKREMVKGLPMVKDNQTVCSDCVVSKQHR 470

Query: 48  DSFPKKGQSRASSKLE 1
           D+FPK    RA+SKLE
Sbjct: 471 DTFPKNASWRATSKLE 486