BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00030525
         (1193 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_013455287.1| replication factor-A carboxy-terminal domain...    96   7e-18
ref|XP_003605675.1| replication factor-A carboxy-terminal domain...    96   1e-17
ref|XP_003605674.2| replication factor-A carboxy-terminal domain...    96   1e-17
ref|XP_003600272.2| replication factor-A carboxy-terminal domain...    96   2e-17
gb|PNX95898.1| replication factor A protein [Trifolium pratense]       88   5e-15
gb|PNY01563.1| replication factor A protein [Trifolium pratense]       87   8e-15
gb|PNY13096.1| replication factor A protein [Trifolium pratense]       87   1e-14
dbj|GAU46750.1| hypothetical protein TSUD_402760 [Trifolium subt...    87   1e-14
dbj|GAU42709.1| hypothetical protein TSUD_382450 [Trifolium subt...    57   1e-14
ref|XP_003593181.2| replication factor-A carboxy-terminal domain...    84   1e-13
ref|XP_013446466.1| replication factor-A carboxy-terminal domain...    84   1e-13
gb|PNX78543.1| replication factor-A carboxy-terminal domain prot...    81   3e-13
dbj|GAU46627.1| hypothetical protein TSUD_284750 [Trifolium subt...    82   3e-13
gb|PNX83103.1| ATP-dependent DNA helicase PIF1, partial [Trifoli...    81   3e-13
gb|PNX95543.1| replication factor-A carboxy-terminal domain prot...    82   4e-13
gb|PNX92168.1| replication factor A protein [Trifolium pratense]       79   4e-12
gb|PNX87840.1| hypothetical protein L195_g043937, partial [Trifo...    74   2e-11
gb|PNY05687.1| replication factor A protein [Trifolium pratense]       76   4e-11
dbj|GAU47630.1| hypothetical protein TSUD_137600 [Trifolium subt...    74   1e-10
dbj|GAU20673.1| hypothetical protein TSUD_230870 [Trifolium subt...    73   4e-10

>ref|XP_013455287.1| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
 gb|KEH29318.1| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
          Length = 417

 Score = 95.5 bits (236), Expect = 7e-18
 Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 8/138 (5%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSHNTRTK*VPLSFSR-------WR 838
           Y +KVRV+D+SDCAT V+FDRDA++L NKSCAD++++H      +P   +        ++
Sbjct: 194 YSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIAALVNCTYLFK 253

Query: 837 PXXXXXXXXXXXSEF-VKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKGKE 661
                         F VK V     IIN+F  KW KEEATF+KN +E  SLS+++ KGK+
Sbjct: 254 VEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKD 313

Query: 660 KVGGSETNILSQHPDSLS 607
            +    +++ S    SLS
Sbjct: 314 VLVVGSSSVQSHDLGSLS 331


>ref|XP_003605675.1| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
 gb|AES87872.1| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
          Length = 480

 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 8/138 (5%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSHNTRTK*VPLSFSR-------WR 838
           Y +KVRV+D+SDCAT V+FDRDA++L NKSCAD++++H      +P   +        ++
Sbjct: 257 YSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIAALVNCTYLFK 316

Query: 837 PXXXXXXXXXXXSEF-VKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKGKE 661
                         F VK V     IIN+F  KW KEEATF+KN +E  SLS+++ KGK+
Sbjct: 317 VEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKD 376

Query: 660 KVGGSETNILSQHPDSLS 607
            +    +++ S    SLS
Sbjct: 377 VLVVGSSSVQSHDLGSLS 394


>ref|XP_003605674.2| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
 gb|AES87871.2| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
          Length = 560

 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 8/138 (5%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSHNTRTK*VPLSFSR-------WR 838
           Y +KVRV+D+SDCAT V+FDRDA++L NKSCAD++++H      +P   +        ++
Sbjct: 337 YSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIAALVNCTYLFK 396

Query: 837 PXXXXXXXXXXXSEF-VKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKGKE 661
                         F VK V     IIN+F  KW KEEATF+KN +E  SLS+++ KGK+
Sbjct: 397 VEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKD 456

Query: 660 KVGGSETNILSQHPDSLS 607
            +    +++ S    SLS
Sbjct: 457 VLVVGSSSVQSHDLGSLS 474


>ref|XP_003600272.2| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
 gb|AES70523.2| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
          Length = 719

 Score = 95.5 bits (236), Expect = 2e-17
 Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 8/138 (5%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSHNTRTK*VPLSFSR-------WR 838
           Y +KVRV+D+SDCAT V+FDRDA++L NKSCAD++++H      +P            ++
Sbjct: 496 YSIKVRVVDDSDCATFVLFDRDATMLFNKSCADILETHRADEGVLPTEIGALVNCTYLFK 555

Query: 837 PXXXXXXXXXXXSEF-VKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKGKE 661
                         F VK V     IIN+F  KW KEEATF+KN +E  SLS+++ KGK+
Sbjct: 556 VEFKTAISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLSSLLDKGKD 615

Query: 660 KVGGSETNILSQHPDSLS 607
            +    +++ S    SLS
Sbjct: 616 MLVVGSSSVQSHDLGSLS 633


>gb|PNX95898.1| replication factor A protein [Trifolium pratense]
          Length = 600

 Score = 87.8 bits (216), Expect = 5e-15
 Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 13/144 (9%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQS----------HNTRTK*VPLSFS 847
           +C+KVRV+D++D AT VIFD+DAS++ N SCAD+IQ                +   +   
Sbjct: 309 FCIKVRVMDHTDSATLVIFDKDASLILNMSCADLIQGIQGTGAGAGGGELPPQIEGMVEK 368

Query: 846 RWRPXXXXXXXXXXXSEF---VKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIM 676
            W              +    V+ +    +II +F  KWD EEA FLKN +E  SLS ++
Sbjct: 369 TWLFKVEAKPSHNPRFDTSYRVRKICTDNAIIKQFKDKWDNEEAVFLKNKNEGGSLSTLL 428

Query: 675 GKGKEKVGGSETNILSQHPDSLSG 604
            KGK    G  +N+LS+  D+ SG
Sbjct: 429 DKGKNVYVGGSSNVLSEDHDNFSG 452


>gb|PNY01563.1| replication factor A protein [Trifolium pratense]
          Length = 526

 Score = 87.0 bits (214), Expect = 8e-15
 Identities = 58/141 (41%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQ--SHNTRTK*VPLSFS-----RWR 838
           YCVKVRV+D +D A  V+FD+DAS L N SCADM++    N     VP   S      W 
Sbjct: 267 YCVKVRVMDQTDHAPFVMFDKDASSLFNMSCADMLEHTRRNGGVGSVPPQISGLVDKTWL 326

Query: 837 PXXXXXXXXXXXSE---FVKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKG 667
                        E    V+ +    +II +F  KWDKEEA   K N+E  SLS ++ KG
Sbjct: 327 FKVETKPSTNPRFEQTFRVRKICTDYAIIKQFQDKWDKEEAAISKINNEVGSLSTLVEKG 386

Query: 666 KEKVGGSETNILSQHPDSLSG 604
           K+ +  S TNILS+   SL+G
Sbjct: 387 KDVLVCSSTNILSEDLQSLTG 407


>gb|PNY13096.1| replication factor A protein [Trifolium pratense]
          Length = 608

 Score = 87.0 bits (214), Expect = 1e-14
 Identities = 58/141 (41%), Positives = 75/141 (53%), Gaps = 10/141 (7%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQ--SHNTRTK*VPLSFS-----RWR 838
           YCVKVRV+D +D A  V+FD+DAS L N SCADM++    N     VP   S      W 
Sbjct: 267 YCVKVRVMDQTDHAPFVMFDKDASSLFNMSCADMLEHTRRNGGVGSVPPQISGLVDKTWL 326

Query: 837 PXXXXXXXXXXXSE---FVKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKG 667
                        E    V+ +    +II +F  KWDKEEA   K N+E  SLS ++ KG
Sbjct: 327 FKVETKPSTNPRFEQTFRVRKICTDYAIIKQFQDKWDKEEAAISKINNEVGSLSTLVEKG 386

Query: 666 KEKVGGSETNILSQHPDSLSG 604
           K+ +  S TNILS+   SL+G
Sbjct: 387 KDVLVCSSTNILSEDLQSLTG 407


>dbj|GAU46750.1| hypothetical protein TSUD_402760 [Trifolium subterraneum]
          Length = 676

 Score = 87.0 bits (214), Expect = 1e-14
 Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSHNT--RTK*VPLSFSR-----WR 838
           YC+KVRV+D++D A+ VIFD+DAS L N SCADM++   T      VP   +R     W 
Sbjct: 321 YCLKVRVMDHTDHASFVIFDKDASSLFNMSCADMLEHTQTIGGVGSVPPQIARLVDNTWL 380

Query: 837 PXXXXXXXXXXXSEF---VKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKG 667
                        E    ++ +    +II +F  KWD+EEA F K N+E  SLS ++ KG
Sbjct: 381 FKVETKPSTNPRFEQTFRIRKICTDHAIIKQFKDKWDREEAAFSKINNEVGSLSTLLEKG 440

Query: 666 KEKVGGSETNILSQHPDSLSG 604
           K+ +  S  NILS+   SL+G
Sbjct: 441 KDILVCSSANILSEDLQSLTG 461


>dbj|GAU42709.1| hypothetical protein TSUD_382450 [Trifolium subterraneum]
          Length = 234

 Score = 56.6 bits (135), Expect(2) = 1e-14
 Identities = 27/54 (50%), Positives = 36/54 (66%)
 Frame = -3

Query: 765 IINKFNQKWDKEEATFLKNNDETNSLSAIMGKGKEKVGGSETNILSQHPDSLSG 604
           II +F  KWD E+A F KN +E  SLS ++ KGK+ + G  +N+LSQ   SLSG
Sbjct: 60  IIKQFKDKWDVEDAEFRKNRNEGGSLSTLLNKGKDILVGGSSNVLSQDYGSLSG 113



 Score = 53.1 bits (126), Expect(2) = 1e-14
 Identities = 27/39 (69%), Positives = 29/39 (74%)
 Frame = -2

Query: 874 D*VSTTILFKVEAKPVFSPRFEQSFRVRKICLDDLIDHQ 758
           D V  T LFKVEAKP  +P+FEQSFRVRKIC DD I  Q
Sbjct: 25  DLVEKTWLFKVEAKPSHNPKFEQSFRVRKICTDDQIIKQ 63


>ref|XP_003593181.2| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
 gb|AES63432.2| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
          Length = 555

 Score = 83.6 bits (205), Expect = 1e-13
 Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 15/145 (10%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSHNTRTK*VPLSFSRWRPXXXXXX 817
           YC++VR ID++DCAT VIFD++A+ L NKSC DM+  H      V +S     P      
Sbjct: 341 YCLRVRAIDHTDCATLVIFDKEATALFNKSCVDMLAEHG-----VAVSEGHLPPEIAGII 395

Query: 816 XXXXXSEF---------------VKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSA 682
                 +                V+ +     +IN+F +KW +EEA F KN  E +SLS 
Sbjct: 396 GKTFLFKVETKVDQNPRFEQSFRVRKICAMPDVINEFKKKWGEEEAAFFKNAMEASSLSV 455

Query: 681 IMGKGKEKVGGSETNILSQHPDSLS 607
           ++ KGK  +    +++L+Q   SL+
Sbjct: 456 LLDKGKAPMIAGSSDVLNQDDFSLT 480


>ref|XP_013446466.1| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
 gb|KEH20493.1| replication factor-A carboxy-terminal domain protein [Medicago
           truncatula]
          Length = 555

 Score = 83.6 bits (205), Expect = 1e-13
 Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 15/145 (10%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSHNTRTK*VPLSFSRWRPXXXXXX 817
           YC++VR ID++DCAT VIFD++A+ L NKSC DM+  H      V +S     P      
Sbjct: 341 YCLRVRAIDHTDCATLVIFDKEATALFNKSCVDMLAEHG-----VAVSEGHLPPEIAGII 395

Query: 816 XXXXXSEF---------------VKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSA 682
                 +                V+ +     +IN+F +KW +EEA F KN  E +SLS 
Sbjct: 396 GKTFLFKVETKVDQNPRFEQSFRVRKICAMPDVINEFKKKWGEEEAAFFKNAMEASSLSV 455

Query: 681 IMGKGKEKVGGSETNILSQHPDSLS 607
           ++ KGK  +    +++L+Q   SL+
Sbjct: 456 LLDKGKAPMIAGSSDVLNQDDFSLT 480


>gb|PNX78543.1| replication factor-A carboxy-terminal domain protein, partial
           [Trifolium pratense]
          Length = 341

 Score = 81.3 bits (199), Expect = 3e-13
 Identities = 52/134 (38%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQS-------HNTRTK*VPLSFSRWR 838
           YC+KVRVID +D AT VIFD+DAS L   SCADM+             ++   L    W 
Sbjct: 53  YCMKVRVIDQTDSATFVIFDKDASSLFQMSCADMLDDIQRVAGVGGVPSQLTSLIDKTWL 112

Query: 837 PXXXXXXXXXXXSE---FVKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKG 667
                        E    V+ +    +II +F  KWD EEA+  K N+E  SLS ++GKG
Sbjct: 113 FKVETKPSNNPRFEQTFKVRKICTDANIIKQFKDKWDHEEASISKLNNEVGSLSTLIGKG 172

Query: 666 KEKVGGSETNILSQ 625
           K+ +    TNILS+
Sbjct: 173 KDVLVCGYTNILSE 186


>dbj|GAU46627.1| hypothetical protein TSUD_284750 [Trifolium subterraneum]
          Length = 526

 Score = 82.4 bits (202), Expect = 3e-13
 Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSHNTRTK*VP----LSFSRWRPXX 829
           +C+KVRVID++D  T VIFD++AS++ N SCADMIQ  +      P    L    W    
Sbjct: 270 FCIKVRVIDHTDSVTLVIFDKEASLILNMSCADMIQGADPAFGVPPLLEGLVDKTWFFKV 329

Query: 828 XXXXXXXXXSE---FVKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKGKEK 658
                     E    V+ +    +II +F  KWD E+A F KN +E  SLS ++ KGK+ 
Sbjct: 330 EAKPSHNPKFEQSFRVRKICTDDAIIKQFKDKWDGEDAKFRKNRNEGGSLSTLLNKGKDI 389

Query: 657 VGGSETNILSQ 625
           + G  +N+L +
Sbjct: 390 LVGGSSNVLCE 400


>gb|PNX83103.1| ATP-dependent DNA helicase PIF1, partial [Trifolium pratense]
          Length = 372

 Score = 81.3 bits (199), Expect = 3e-13
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 10/141 (7%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSH--NTRTK*VP-----LSFSRWR 838
           YC+KVRV+D++D A+ VIFDR+AS L N SCADM+ ++  N     +P     L    W 
Sbjct: 64  YCMKVRVMDHTDSASLVIFDREASSLFNMSCADMLDANQMNVGPNVMPPEIASLVEKTWL 123

Query: 837 PXXXXXXXXXXXSE---FVKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKG 667
                        E    V+ +    +II  F  +WD+EE +  K N+E  SLS ++GKG
Sbjct: 124 FKVETKHARNPRFEQTFKVRKICTDSAIIKIFRDRWDREEDSISKLNNEVGSLSTLLGKG 183

Query: 666 KEKVGGSETNILSQHPDSLSG 604
           K+ +    TN+LS+   SL+G
Sbjct: 184 KDILICGSTNVLSEDLLSLTG 204


>gb|PNX95543.1| replication factor-A carboxy-terminal domain protein [Trifolium
           pratense]
          Length = 445

 Score = 81.6 bits (200), Expect = 4e-13
 Identities = 51/142 (35%), Positives = 77/142 (54%), Gaps = 11/142 (7%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQS--HNTRTK*VP------LSFSRW 841
           +CVKVRV+D++D A  VIFD++AS + N +CADMIQ+  ++   + VP      L    W
Sbjct: 140 FCVKVRVMDDTDSAIFVIFDKEASSIFNMTCADMIQNGENDVGERIVPPQIDETLIDQTW 199

Query: 840 RPXXXXXXXXXXXSE---FVKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGK 670
                         E    V+ +    SII +F  KWD E+A +LKN +E  SLS ++ K
Sbjct: 200 LFKVEAKPFQNPRFEQSFRVRKICTDESIIKEFKDKWDNEDAVYLKNTNEDGSLSTLLEK 259

Query: 669 GKEKVGGSETNILSQHPDSLSG 604
           GK+      +N+L +  ++ SG
Sbjct: 260 GKDDYVVGSSNVLCEEFENFSG 281


>gb|PNX92168.1| replication factor A protein [Trifolium pratense]
          Length = 661

 Score = 79.0 bits (193), Expect = 4e-12
 Identities = 52/143 (36%), Positives = 73/143 (51%), Gaps = 12/143 (8%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQ---SHNTRTK*VP------LSFSR 844
           +CVK+RVID++D AT V+FD++AS + N SCADM+Q   + N     VP      L    
Sbjct: 346 FCVKLRVIDDTDSATLVVFDKEASGIFNMSCADMLQLGDADNDGEGIVPPPIDDSLVNQT 405

Query: 843 WRPXXXXXXXXXXXSE---FVKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMG 673
           W              E    V+ +     II +F  KWD E+A   K  +E  SLS ++ 
Sbjct: 406 WLFKVETKPSQNPRFEQSFRVRKICTDEGIIKQFKDKWDSEDALRTKKRNEGGSLSTLLD 465

Query: 672 KGKEKVGGSETNILSQHPDSLSG 604
           KGK+   G  +N+LSQ   + SG
Sbjct: 466 KGKDVYVGGTSNVLSQECQNFSG 488


>gb|PNX87840.1| hypothetical protein L195_g043937, partial [Trifolium pratense]
          Length = 206

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 44/134 (32%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQ--SHNTRTK*VPLSFSR------- 844
           +C+KVRV+DN+DC T VIFD D ++L  K+C  ++     +  +  +P            
Sbjct: 2   FCIKVRVLDNTDCGTMVIFDNDVTLLFRKTCQAVLDFIPRDAPSGFLPNELVGLVEQTLL 61

Query: 843 WRPXXXXXXXXXXXSEF-VKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKG 667
           ++              F V+ +    ++IN F +KWD E+A F K+ +ET SLS +M KG
Sbjct: 62  FKVETKPKFNTKFEQSFRVRKICSDANVINTFKKKWDNEDAPFSKSANETASLSTLMDKG 121

Query: 666 KEKVGGSETNILSQ 625
           K  +G   ++ LSQ
Sbjct: 122 KRVLGEGSSHGLSQ 135


>gb|PNY05687.1| replication factor A protein [Trifolium pratense]
          Length = 651

 Score = 75.9 bits (185), Expect = 4e-11
 Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSHNTR--TK*VP------LSFSRW 841
           YCVK+RV+D++D AT V+FD++AS + N SCADM+Q  +     + VP      L    W
Sbjct: 346 YCVKLRVMDDTDSATFVVFDKEASAIFNMSCADMLQLGDVADGEQIVPPEIDDMLVNHTW 405

Query: 840 RPXXXXXXXXXXXSE---FVKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGK 670
                         E    V+ +     II +F  KWD E+A   K  +E  SLS ++ K
Sbjct: 406 LFMVEAKPSQNPRFEQSFRVRKICTDEVIIKQFKDKWDNEDAVCNKKRNEGGSLSTLLDK 465

Query: 669 GKEKVGGSETNILSQHPDSLSG 604
           GK+   G  +N LS+   + SG
Sbjct: 466 GKDVYVGGTSNFLSEECQNFSG 487


>dbj|GAU47630.1| hypothetical protein TSUD_137600 [Trifolium subterraneum]
          Length = 416

 Score = 73.9 bits (180), Expect = 1e-10
 Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
 Frame = -3

Query: 1017 IMLEAEGYCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQS--HNTRTK*VPLSFS- 847
            +M     +C+KVR +DN+DC T VIFD DAS+L +KSC  ++ S         +P   + 
Sbjct: 189  VMRVTPRFCIKVRALDNTDCGTMVIFDNDASLLIHKSCQAVLDSIPRGVADGFLPNEIAG 248

Query: 846  ------RWRPXXXXXXXXXXXSEF-VKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSL 688
                   ++              F V+ +    ++I++F  KWDKE+A+F K+ +E  SL
Sbjct: 249  LVGQTLLFKVETKAKFNTKFEQSFRVRKICADANVISQFKMKWDKEDASFSKSKNENASL 308

Query: 687  SAIMGKGK 664
            S +M KGK
Sbjct: 309  STLMDKGK 316


>dbj|GAU20673.1| hypothetical protein TSUD_230870 [Trifolium subterraneum]
          Length = 531

 Score = 72.8 bits (177), Expect = 4e-10
 Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 10/124 (8%)
 Frame = -3

Query: 996 YCVKVRVIDNSDCATSVIFDRDASILCNKSCADMIQSHNT--RTK*VP-----LSFSRWR 838
           +C+KVRVID++D AT VIFD++AS++ N SCADMIQ  +T      VP     L    W 
Sbjct: 297 FCIKVRVIDHTDSATLVIFDKEASLILNMSCADMIQGADTVVGVGVVPPLLEGLVEKTWL 356

Query: 837 PXXXXXXXXXXXSE---FVKYVLMTLSIINKFNQKWDKEEATFLKNNDETNSLSAIMGKG 667
                        E    V+ +    +II +F  KWD E+A F KN ++ + LS    KG
Sbjct: 357 FKVEAKPSHNPKFEPSYRVRKICTDDAIIKQFKDKWDAEDAKFRKNRNDLSCLSGQCDKG 416

Query: 666 KEKV 655
           K+ +
Sbjct: 417 KDLI 420