BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Astragalus22_contig00030434
         (870 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]            185   e-104
gb|PNX81877.1| hypothetical protein L195_g037902, partial [Trifo...   189   e-104
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   182   e-103
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   181   e-102
dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subt...   189   e-102
gb|PNX85850.1| hypothetical protein L195_g041924 [Trifolium prat...   189   e-101
gb|KYP60712.1| Retrovirus-related Pol polyprotein from transposo...   177   2e-99
emb|CAN76698.1| hypothetical protein VITISV_011792 [Vitis vinifera]   177   4e-99
dbj|GAU23220.1| hypothetical protein TSUD_172480 [Trifolium subt...   166   1e-96
emb|CAN72600.1| hypothetical protein VITISV_036712 [Vitis vinifera]   173   2e-96
gb|AFP55578.1| copia-type polyprotein [Rosa rugosa]                   182   2e-96
dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subt...   168   2e-96
gb|KYP58220.1| Retrovirus-related Pol polyprotein from transposo...   186   4e-96
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            177   5e-96
emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]   177   6e-96
gb|PNX85069.1| retrotransposon-related protein [Trifolium pratense]   175   1e-95
gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]   166   5e-95
emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]   181   2e-94
gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]            161   3e-94
gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]            166   4e-94

>gb|PNX94522.1| copia-type polyprotein [Trifolium pratense]
          Length = 1172

 Score =  185 bits (470), Expect(3) = e-104
 Identities = 89/117 (76%), Positives = 103/117 (88%)
 Frame = -3

Query: 583  WNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWYSKIE 404
            W+++QLDVKSAFLHGEL+E VYVEQPLGYVKKG+ED+VYRLHKALY LKQAPRA YSKIE
Sbjct: 907  WSVFQLDVKSAFLHGELNEIVYVEQPLGYVKKGKEDQVYRLHKALYELKQAPRALYSKIE 966

Query: 403  KYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMMKS 233
            +YFV+EGF K  +EHTLF KKD   N LIISLYVDDLIFTGN+ +M E+FK+SMM +
Sbjct: 967  QYFVREGFEKCPHEHTLFVKKDGNNNWLIISLYVDDLIFTGNNHNMVEKFKNSMMNN 1023



 Score =  132 bits (331), Expect(3) = e-104
 Identities = 60/82 (73%), Positives = 73/82 (89%)
 Frame = -2

Query: 836  NEIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDY 657
            +EI +IERNNTWELTKLPKNA+ IGVKWI+KTK+N++GE+EK+KARLVAK Y Q+ G DY
Sbjct: 823  DEIAAIERNNTWELTKLPKNARVIGVKWIYKTKVNDKGEVEKFKARLVAKRYAQRYGTDY 882

Query: 656  KEVFAPVARWDTIRCILAVACS 591
            KEVFAPVARW+TIR + A+A S
Sbjct: 883  KEVFAPVARWNTIRSLSAIAAS 904



 Score =  112 bits (279), Expect(3) = e-104
 Identities = 53/77 (68%), Positives = 62/77 (80%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            FDM+DLGKMRHFLGIE +Q  +GIF+CQQRYA EILERF M +S A+ SPIV GTKL + 
Sbjct: 1024 FDMSDLGKMRHFLGIEAIQCDQGIFVCQQRYAQEILERFNMDKSNAVCSPIVSGTKLSKH 1083

Query: 51   ESGEPVDATQFKQIVGS 1
              G+ V+ TQFKQIVGS
Sbjct: 1084 NKGDDVNPTQFKQIVGS 1100


>gb|PNX81877.1| hypothetical protein L195_g037902, partial [Trifolium pratense]
          Length = 575

 Score =  189 bits (480), Expect(3) = e-104
 Identities = 88/120 (73%), Positives = 103/120 (85%)
 Frame = -3

Query: 595 ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
           A KGWN+YQLDVKSAFLHGEL+E V+V+QP GYVKKG+E KVY+L +ALYGLKQAPRAWY
Sbjct: 174 AQKGWNVYQLDVKSAFLHGELNEQVFVDQPQGYVKKGDELKVYKLKRALYGLKQAPRAWY 233

Query: 415 SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMMK 236
           S+IE YF KEGF +  YEHTLF K+ + GNILI+SLYVDDLIFTGN  +MF++FK SM K
Sbjct: 234 SRIEAYFTKEGFERCPYEHTLFVKQSETGNILIVSLYVDDLIFTGNDENMFKEFKKSMEK 293



 Score =  137 bits (346), Expect(3) = e-104
 Identities = 61/84 (72%), Positives = 74/84 (88%)
 Frame = -2

Query: 836 NEIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDY 657
           NE+++IE+NNTWELT LP  AK IG+KWIFKTK+NE GE+EKYKARLVAKGY+Q+ G+DY
Sbjct: 94  NEMEAIEKNNTWELTDLPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDY 153

Query: 656 KEVFAPVARWDTIRCILAVACSKG 585
            EVFAPVARWDTIR ++A+A  KG
Sbjct: 154 TEVFAPVARWDTIRMVIALAAQKG 177



 Score =  102 bits (253), Expect(3) = e-104
 Identities = 44/78 (56%), Positives = 61/78 (78%)
 Frame = -1

Query: 237 KAFDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLP 58
           K F+M+DLGKM +FLG+EV+QN  GI+ICQ++Y +++LERFGM +S    +PI PG KL 
Sbjct: 293 KEFNMSDLGKMHYFLGVEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPGCKLI 352

Query: 57  RSESGEPVDATQFKQIVG 4
           + E+G  VDAT +KQ+VG
Sbjct: 353 KDENGVKVDATMYKQVVG 370


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  182 bits (462), Expect(3) = e-103
 Identities = 84/118 (71%), Positives = 100/118 (84%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A KGW +YQLDVKSAFLHGEL+E V+++QP GYVK+G+E KVY+L+KALYGLKQAPRAWY
Sbjct: 903  AQKGWKVYQLDVKSAFLHGELTEAVFIDQPQGYVKEGDELKVYKLNKALYGLKQAPRAWY 962

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSM 242
            S+IE YF+KEGF +  +EHTLF K  + G ILI+SLYVDDLIFTGN   MFE+FK SM
Sbjct: 963  SRIEAYFIKEGFERCPHEHTLFVKSSEGGKILIVSLYVDDLIFTGNDEYMFEEFKKSM 1020



 Score =  132 bits (333), Expect(3) = e-103
 Identities = 62/83 (74%), Positives = 71/83 (85%)
 Frame = -2

Query: 833  EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
            EI++IERN+TWELT LP  AK IGVKWIFKTK+NE GE+EK KARLVAKGY Q+ GIDY 
Sbjct: 824  EIEAIERNHTWELTILPAGAKTIGVKWIFKTKLNENGEVEKCKARLVAKGYAQQYGIDYT 883

Query: 653  EVFAPVARWDTIRCILAVACSKG 585
            EVFAPVARWDTIR ++A+A  KG
Sbjct: 884  EVFAPVARWDTIRMVIALAAQKG 906



 Score =  110 bits (275), Expect(3) = e-103
 Identities = 51/77 (66%), Positives = 64/77 (83%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            FDM+DLG MR+FLG+EVVQN  GI+ICQ++YASEILERFGM ++ ++ +PIVPG KL + 
Sbjct: 1024 FDMSDLGMMRYFLGVEVVQNEAGIYICQKKYASEILERFGMEKANSVRNPIVPGIKLMKD 1083

Query: 51   ESGEPVDATQFKQIVGS 1
            E G  VDAT +KQIVGS
Sbjct: 1084 EGGVKVDATMYKQIVGS 1100


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  181 bits (460), Expect(3) = e-102
 Identities = 84/118 (71%), Positives = 100/118 (84%)
 Frame = -3

Query: 595 ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
           A KGW +YQLDVKSAFLHGEL+E V+++QP GYVK+G+E KVY+L+KALYGLKQAPRAWY
Sbjct: 631 AKKGWKVYQLDVKSAFLHGELTEAVFIDQPQGYVKEGDELKVYKLNKALYGLKQAPRAWY 690

Query: 415 SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSM 242
           S+IE YF+KEGF +  +EHTLF K  + G ILI+SLYVDDLIFTGN   MFE+FK SM
Sbjct: 691 SRIEAYFIKEGFERCPHEHTLFVKLSEGGKILIVSLYVDDLIFTGNDEYMFEEFKKSM 748



 Score =  132 bits (333), Expect(3) = e-102
 Identities = 62/83 (74%), Positives = 71/83 (85%)
 Frame = -2

Query: 833 EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
           EI++IERN+TWELT LP  AK IGVKWIFKTK+NE GE+EK KARLVAKGY Q+ GIDY 
Sbjct: 552 EIEAIERNHTWELTILPAGAKTIGVKWIFKTKLNENGEVEKCKARLVAKGYAQQYGIDYT 611

Query: 653 EVFAPVARWDTIRCILAVACSKG 585
           EVFAPVARWDTIR ++A+A  KG
Sbjct: 612 EVFAPVARWDTIRMVIALAAKKG 634



 Score =  110 bits (274), Expect(3) = e-102
 Identities = 51/77 (66%), Positives = 64/77 (83%)
 Frame = -1

Query: 231 FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
           FDM+DLG MR+FLG+EVVQN  GI+ICQ++YASEILERFGM ++ ++ +PIVPG KL + 
Sbjct: 752 FDMSDLGMMRYFLGVEVVQNEAGIYICQKKYASEILERFGMEKANSVRNPIVPGFKLMKD 811

Query: 51  ESGEPVDATQFKQIVGS 1
           E G  VDAT +KQIVGS
Sbjct: 812 EGGVKVDATMYKQIVGS 828


>dbj|GAU16533.1| hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  189 bits (479), Expect(3) = e-102
 Identities = 91/119 (76%), Positives = 102/119 (85%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A +GWN+YQLDVKSAFLHGEL ETVYVEQP GYVK G+EDKVY+LHKALYGLKQAPRAWY
Sbjct: 918  ASRGWNVYQLDVKSAFLHGELKETVYVEQPAGYVKSGKEDKVYKLHKALYGLKQAPRAWY 977

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMM 239
            SKIE YF+KEGF K  +EHTLF K++ + N LIISLYVDDLIFTGN   + +QFK SMM
Sbjct: 978  SKIEAYFIKEGFVKCPHEHTLFVKRE-DKNWLIISLYVDDLIFTGNDNKLLKQFKESMM 1035



 Score =  135 bits (340), Expect(3) = e-102
 Identities = 61/83 (73%), Positives = 74/83 (89%)
 Frame = -2

Query: 833  EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
            EI++IE+N TW+LT LP+ AK IGVKWI+KTK+NE+GEIEKYKARLVAKGY Q+ G DYK
Sbjct: 839  EIEAIEKNKTWQLTDLPQGAKVIGVKWIYKTKLNEKGEIEKYKARLVAKGYAQRYGTDYK 898

Query: 653  EVFAPVARWDTIRCILAVACSKG 585
            EVFAPVARWDTIR +LA++ S+G
Sbjct: 899  EVFAPVARWDTIRSLLAISASRG 921



 Score = 97.4 bits (241), Expect(3) = e-102
 Identities = 45/63 (71%), Positives = 52/63 (82%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            FDMTDLGKMRHFLGIEV+QN  GIFICQ+RYA EILERF M +S A+ +PIV GTKL + 
Sbjct: 1038 FDMTDLGKMRHFLGIEVIQNEHGIFICQKRYAKEILERFNMDKSNAVYNPIVTGTKLSKH 1097

Query: 51   ESG 43
            + G
Sbjct: 1098 DKG 1100


>gb|PNX85850.1| hypothetical protein L195_g041924 [Trifolium pratense]
          Length = 477

 Score =  189 bits (481), Expect(3) = e-101
 Identities = 90/118 (76%), Positives = 101/118 (85%)
 Frame = -3

Query: 595 ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
           A KGW++YQLDVKSAFLHGEL+E V+V+QP GYVKKG+  KVYRL KALYGLKQAPRAWY
Sbjct: 106 AQKGWSVYQLDVKSAFLHGELNEAVFVDQPQGYVKKGDTVKVYRLKKALYGLKQAPRAWY 165

Query: 415 SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSM 242
           S+IE YF+KEGF K  YEHTLF K  + GNILIISLYVDDLIFTGN  +MFE+FK SM
Sbjct: 166 SRIEAYFIKEGFEKCPYEHTLFVKLSEGGNILIISLYVDDLIFTGNDENMFEEFKKSM 223



 Score =  137 bits (346), Expect(3) = e-101
 Identities = 61/84 (72%), Positives = 74/84 (88%)
 Frame = -2

Query: 836 NEIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDY 657
           NE+++IE+NNTWELT LP  AK IG+KWIFKTK+NE GE+EKYKARLVAKGY+Q+ G+DY
Sbjct: 26  NEMEAIEKNNTWELTDLPTGAKTIGLKWIFKTKLNENGEVEKYKARLVAKGYSQQYGVDY 85

Query: 656 KEVFAPVARWDTIRCILAVACSKG 585
            EVFAPVARWDTIR ++A+A  KG
Sbjct: 86  TEVFAPVARWDTIRMVIALAAQKG 109



 Score = 92.0 bits (227), Expect(3) = e-101
 Identities = 40/70 (57%), Positives = 54/70 (77%)
 Frame = -1

Query: 231 FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
           F+M+DLGKM +FLG+EV+QN +GI+ICQ++Y  E+LERFGM +S    +PI PG KL + 
Sbjct: 227 FNMSDLGKMHYFLGVEVIQNEKGIYICQRKYVRELLERFGMEKSNLSRNPIAPGCKLVKD 286

Query: 51  ESGEPVDATQ 22
           E G  VDAT+
Sbjct: 287 EEGVKVDATK 296


>gb|KYP60712.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1110

 Score =  177 bits (449), Expect(3) = 2e-99
 Identities = 84/120 (70%), Positives = 99/120 (82%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A +GW +YQLDVKSAFLHGEL E VYVEQP GY   GEEDKVY+L KALYGLKQAPRAW+
Sbjct: 862  ASQGWTVYQLDVKSAFLHGELVEEVYVEQPKGYEVIGEEDKVYKLKKALYGLKQAPRAWF 921

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMMK 236
            SKIE YF+KEGF +   +H LFTKK+   N+LI++LYVDDLIFTGNS  MF++F++SM K
Sbjct: 922  SKIESYFLKEGFERSTSDHALFTKKEGGINVLIVNLYVDDLIFTGNSEKMFQEFRNSMKK 981



 Score =  134 bits (337), Expect(3) = 2e-99
 Identities = 62/84 (73%), Positives = 72/84 (85%)
 Frame = -2

Query: 836  NEIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDY 657
            NEI +I +N TWELT LP  AKKIGVKW+FKTKINE+GE++KYKARLVAKGY Q+ GIDY
Sbjct: 782  NEIAAINKNGTWELTTLPTGAKKIGVKWVFKTKINEKGEVDKYKARLVAKGYAQEAGIDY 841

Query: 656  KEVFAPVARWDTIRCILAVACSKG 585
             EVFAPVARWDTIR  L++A S+G
Sbjct: 842  FEVFAPVARWDTIRLTLSIAASQG 865



 Score =  102 bits (253), Expect(3) = 2e-99
 Identities = 47/79 (59%), Positives = 60/79 (75%)
 Frame = -1

Query: 237  KAFDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLP 58
            K F+MTDLG+MR+FLG+EV   S GIFICQ++YA++ILERFG     A+ +PIVPG KL 
Sbjct: 981  KEFEMTDLGRMRYFLGVEVTHTSNGIFICQRKYANQILERFGFQNCSAVKNPIVPGCKLT 1040

Query: 57   RSESGEPVDATQFKQIVGS 1
            +   G  VDAT +KQ+VGS
Sbjct: 1041 KDAGGLKVDATTYKQMVGS 1059


>emb|CAN76698.1| hypothetical protein VITISV_011792 [Vitis vinifera]
          Length = 1084

 Score =  177 bits (449), Expect(3) = 4e-99
 Identities = 83/118 (70%), Positives = 97/118 (82%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A  GW++YQLDVKSAFLHGEL+E V++EQP GY KKGEE KVY+L KALYGLKQAPRAWY
Sbjct: 697  ARNGWSVYQLDVKSAFLHGELNEAVFIEQPQGYEKKGEEHKVYKLKKALYGLKQAPRAWY 756

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSM 242
            S+IE YF+KEGF + + +HTLF K    G ILI+SLYVDDLIFTGN   MF +FK+SM
Sbjct: 757  SRIEAYFIKEGFERCSCDHTLFIKTGDGGKILIVSLYVDDLIFTGNDESMFVKFKNSM 814



 Score =  127 bits (318), Expect(3) = 4e-99
 Identities = 57/83 (68%), Positives = 69/83 (83%)
 Frame = -2

Query: 833 EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
           EI++IE N TWELT LP+  KKIGVKW+FKTK+NE G+++K KARLVAKGY Q+ GIDY 
Sbjct: 618 EIEAIEXNXTWELTDLPEGVKKIGVKWVFKTKLNENGKVDKCKARLVAKGYAQQHGIDYT 677

Query: 653 EVFAPVARWDTIRCILAVACSKG 585
           EVFAPVARWDTIR ++A+A   G
Sbjct: 678 EVFAPVARWDTIRMVIALAARNG 700



 Score =  108 bits (270), Expect(3) = 4e-99
 Identities = 48/77 (62%), Positives = 66/77 (85%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            FDMTDLGKM++FLG+EV+QNS GI+I Q++YA E+LERFGM +S ++ +PIVPG +L ++
Sbjct: 818  FDMTDLGKMKYFLGVEVLQNSEGIYISQRKYAKEVLERFGMEKSNSVKNPIVPGDRLTKN 877

Query: 51   ESGEPVDATQFKQIVGS 1
            E G  VDAT++KQ+VGS
Sbjct: 878  EGGVKVDATKYKQLVGS 894


>dbj|GAU23220.1| hypothetical protein TSUD_172480 [Trifolium subterraneum]
          Length = 1323

 Score =  166 bits (420), Expect(3) = 1e-96
 Identities = 81/118 (68%), Positives = 94/118 (79%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A +GW +YQ DVKSAFLHGEL E VY++QP GY +      VY+L KALYGLKQAPRAWY
Sbjct: 916  ASQGWFVYQFDVKSAFLHGELQENVYIDQPPGYGRGN--GMVYKLKKALYGLKQAPRAWY 973

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSM 242
            SKIE YFV+E F K  +EHTLF K+DK+G+ILI+SLYVDDLIFTGN+  MFE FK SM
Sbjct: 974  SKIESYFVQENFVKCPHEHTLFVKQDKDGSILIVSLYVDDLIFTGNNEAMFESFKKSM 1031



 Score =  139 bits (351), Expect(3) = 1e-96
 Identities = 66/83 (79%), Positives = 74/83 (89%)
 Frame = -2

Query: 833  EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
            EI+SIERN+TWEL  LP+ AK+IGVKWIFKTK NE GEIEKYKARLVAKGY+Q+ GID+ 
Sbjct: 837  EIESIERNDTWELVTLPREAKRIGVKWIFKTKYNENGEIEKYKARLVAKGYSQQHGIDFN 896

Query: 653  EVFAPVARWDTIRCILAVACSKG 585
            EVFAPVARWDTIR ILAVA S+G
Sbjct: 897  EVFAPVARWDTIRTILAVAASQG 919



 Score = 99.0 bits (245), Expect(3) = 1e-96
 Identities = 46/76 (60%), Positives = 61/76 (80%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            F MTDLGKMR FLG+EV Q + GIFI QQ+YA+E+LERF MS+   + SP+VPG KL + 
Sbjct: 1035 FAMTDLGKMRFFLGVEVKQLNCGIFIHQQKYANEVLERFNMSQCNKVCSPMVPGNKLTKD 1094

Query: 51   ESGEPVDATQFKQIVG 4
            E+G+PVDAT ++Q++G
Sbjct: 1095 ENGKPVDATSYRQMIG 1110


>emb|CAN72600.1| hypothetical protein VITISV_036712 [Vitis vinifera]
          Length = 1246

 Score =  173 bits (438), Expect(3) = 2e-96
 Identities = 81/120 (67%), Positives = 96/120 (80%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A +GW IYQLDVKSAFL+GEL+E VYV+QP GY KKG E KVY+LHKALYGLKQAPRAW+
Sbjct: 849  AQRGWTIYQLDVKSAFLNGELNEDVYVDQPKGYEKKGSEHKVYKLHKALYGLKQAPRAWF 908

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMMK 236
            S+IE YF+ EGF K   E TLFTK+   G ILI+S+Y+D+LI+T N  DM   FK+SMMK
Sbjct: 909  SRIEAYFISEGFQKCPNEQTLFTKRSSAGKILIVSIYMDNLIYTSNDEDMISGFKNSMMK 968



 Score =  122 bits (305), Expect(3) = 2e-96
 Identities = 53/84 (63%), Positives = 72/84 (85%)
 Frame = -2

Query: 836  NEIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDY 657
            +EI+SIE+N TW+LT LP  AK IGVKWI+KTK+NE GE++KYKARLVAKGY+Q+QG+D+
Sbjct: 769  SEINSIEKNQTWKLTDLPTGAKTIGVKWIYKTKLNELGEVDKYKARLVAKGYSQQQGVDF 828

Query: 656  KEVFAPVARWDTIRCILAVACSKG 585
             +++APVAR DT+R I+A+   +G
Sbjct: 829  TKIYAPVARMDTVRMIVALTAQRG 852



 Score =  108 bits (271), Expect(3) = 2e-96
 Identities = 52/79 (65%), Positives = 63/79 (79%)
 Frame = -1

Query: 237  KAFDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLP 58
            K FDMTDLG+MR FLGIEV+Q S GIFICQ RYA+E+L+RFGM  SK ++SPIVPG K+ 
Sbjct: 968  KVFDMTDLGRMRFFLGIEVLQKSNGIFICQMRYATEVLKRFGMFDSKPVSSPIVPGFKMS 1027

Query: 57   RSESGEPVDATQFKQIVGS 1
            R + G  V+ T FKQ+VGS
Sbjct: 1028 RDDDGVAVNMTNFKQMVGS 1046


>gb|AFP55578.1| copia-type polyprotein [Rosa rugosa]
          Length = 1187

 Score =  182 bits (462), Expect(3) = 2e-96
 Identities = 86/119 (72%), Positives = 100/119 (84%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A K W I+QLDVKSAFLHGEL+E VY+EQP G+ +KGEE+KVY+L KALYGLKQAPRAWY
Sbjct: 774  AQKNWTIFQLDVKSAFLHGELNEDVYIEQPQGFEQKGEEEKVYKLKKALYGLKQAPRAWY 833

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMM 239
            S+IE YFVKEGF + +YEHTLF K + EG +LI+SLYVDD IFTGN   M E+FKSSMM
Sbjct: 834  SRIEGYFVKEGFERCSYEHTLFVKIEGEGKMLIVSLYVDDQIFTGNDMSMIEKFKSSMM 892



 Score =  125 bits (314), Expect(3) = 2e-96
 Identities = 58/87 (66%), Positives = 71/87 (81%)
 Frame = -2

Query: 848 ESYGNEIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQ 669
           E+   EI++IE N+TW+LT LPK  KKIGVKW+FKTK NE G+++K KARLVAKGY Q+ 
Sbjct: 690 EAMRAEIEAIETNDTWQLTSLPKGVKKIGVKWVFKTKYNEHGKVDKCKARLVAKGYAQQF 749

Query: 668 GIDYKEVFAPVARWDTIRCILAVACSK 588
           GIDY EV+APVARWDTIR I+A+A  K
Sbjct: 750 GIDYTEVYAPVARWDTIRLIVALAAQK 776



 Score = 96.3 bits (238), Expect(3) = 2e-96
 Identities = 42/77 (54%), Positives = 59/77 (76%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            F+MTDLG+M++FLG+E+ Q++ GI +CQ +YA E++ERFGM +S  + +PIVPG+KL   
Sbjct: 895  FEMTDLGEMKYFLGVEIRQSAEGIHLCQSKYAREVIERFGMGKSNPVRNPIVPGSKLSME 954

Query: 51   ESGEPVDATQFKQIVGS 1
              G  VD T FKQ+VGS
Sbjct: 955  AGGAVVDGTLFKQLVGS 971


>dbj|GAU23361.1| hypothetical protein TSUD_334080 [Trifolium subterraneum]
          Length = 1322

 Score =  168 bits (426), Expect(3) = 2e-96
 Identities = 83/120 (69%), Positives = 97/120 (80%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A + W++YQLDVKSAFLHGEL E VYV+QPLGY K+ E+ KVY+L KALYGLKQAPRAWY
Sbjct: 910  ASQNWSVYQLDVKSAFLHGELVENVYVDQPLGYQKE-EKGKVYKLKKALYGLKQAPRAWY 968

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMMK 236
            SKIE YF +E F K  YEHTLF K++KE  +LI+SLYVDDLI+TGN  +MF  FK SM K
Sbjct: 969  SKIESYFGQEKFEKCPYEHTLFVKRNKE-KLLIVSLYVDDLIYTGNDVEMFNNFKDSMQK 1027



 Score =  139 bits (349), Expect(3) = 2e-96
 Identities = 65/91 (71%), Positives = 78/91 (85%)
 Frame = -2

Query: 860  GCLEESYGNEIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGY 681
            G  +++   EI+SIERN+TWEL  LP  AKKIGVKWI+KTK NE+GE+EKYKARLVAKGY
Sbjct: 822  GVWKKAMDQEIESIERNDTWELVTLPAGAKKIGVKWIYKTKYNEKGEVEKYKARLVAKGY 881

Query: 680  TQKQGIDYKEVFAPVARWDTIRCILAVACSK 588
            +Q+QGIDY EVFAPVARWDTIR IL++A S+
Sbjct: 882  SQQQGIDYNEVFAPVARWDTIRTILSLAASQ 912



 Score = 96.3 bits (238), Expect(3) = 2e-96
 Identities = 48/86 (55%), Positives = 58/86 (67%)
 Frame = -1

Query: 261  NNLRVQ**KAFDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSP 82
            NN +    K F MTDLGKMR FLG+EV Q   GIFI QQ+Y  EIL RFGM     + SP
Sbjct: 1019 NNFKDSMQKKFAMTDLGKMRFFLGVEVTQGEFGIFINQQKYVKEILSRFGMEACNMVCSP 1078

Query: 81   IVPGTKLPRSESGEPVDATQFKQIVG 4
            +VPG KL + E G  VD+T++KQ+VG
Sbjct: 1079 MVPGNKLMKDEEGSAVDSTKYKQMVG 1104


>gb|KYP58220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 377

 Score =  186 bits (471), Expect(3) = 4e-96
 Identities = 86/121 (71%), Positives = 105/121 (86%)
 Frame = -3

Query: 601 WPALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRA 422
           + A KGW I+QLDVKSAFLHGEL+E V+VEQP GYV+KG+E+KVY+L KALYGLKQAPRA
Sbjct: 81  YAAQKGWAIHQLDVKSAFLHGELAEDVFVEQPRGYVQKGKEEKVYKLKKALYGLKQAPRA 140

Query: 421 WYSKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSM 242
           WY++IE YF+KEGF K  YEHTLF K++K G++LI+SLYVDDL+FTGN   MF +FK+SM
Sbjct: 141 WYNRIEAYFIKEGFKKCEYEHTLFVKQNKRGSMLIVSLYVDDLLFTGNDELMFTEFKNSM 200

Query: 241 M 239
           M
Sbjct: 201 M 201



 Score =  119 bits (299), Expect(3) = 4e-96
 Identities = 52/83 (62%), Positives = 68/83 (81%)
 Frame = -2

Query: 833 EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
           EI++IE+N TWEL   PK AK +GVKW++KTK+NE+GE++K+KARLV KGY Q+ GIDY 
Sbjct: 4   EIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGEVDKFKARLVVKGYAQQYGIDYT 63

Query: 653 EVFAPVARWDTIRCILAVACSKG 585
           EVFAPVAR +T+R ++A A  KG
Sbjct: 64  EVFAPVARMETVRLVIAYAAQKG 86



 Score = 97.4 bits (241), Expect(3) = 4e-96
 Identities = 42/76 (55%), Positives = 61/76 (80%)
 Frame = -1

Query: 231 FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
           FDMTDLGKM++FLG+E++Q S GIFICQ++Y  E+L+RFG+++S ++ +PI PG K+ + 
Sbjct: 204 FDMTDLGKMKYFLGLEILQTSGGIFICQKKYVEEMLQRFGLNQSNSVQTPIAPGFKICKD 263

Query: 51  ESGEPVDATQFKQIVG 4
           E G+ VD T F Q+VG
Sbjct: 264 EGGQQVDKTCFMQMVG 279


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  177 bits (450), Expect(3) = 5e-96
 Identities = 85/119 (71%), Positives = 99/119 (83%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A   W+++QLDVKSAFLHGEL+E V+V+QPLGY KKGEEDKVY+L KALYGLKQAPRAWY
Sbjct: 934  AQHSWDVFQLDVKSAFLHGELNEEVFVKQPLGYEKKGEEDKVYKLKKALYGLKQAPRAWY 993

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMM 239
            SKIE YFV+EGF K   EHTLFTK  +   +LI+SLYVDDLI+TGN   M E+FK+SMM
Sbjct: 994  SKIEAYFVREGFEKCFCEHTLFTKTKEGSKLLIVSLYVDDLIYTGNDRIMCEEFKNSMM 1052



 Score =  122 bits (307), Expect(3) = 5e-96
 Identities = 58/79 (73%), Positives = 67/79 (84%)
 Frame = -2

Query: 833  EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
            EI+SIE+N TWELT LP   K IGVKWI+KTK+NE G+I+KYKARLVAKGY Q+ G+DY 
Sbjct: 855  EIESIEKNKTWELTILPNGIKPIGVKWIYKTKLNENGQIDKYKARLVAKGYAQQYGVDYT 914

Query: 653  EVFAPVARWDTIRCILAVA 597
            EVFAPVAR DTIR ILA+A
Sbjct: 915  EVFAPVARLDTIRLILALA 933



 Score =  102 bits (253), Expect(3) = 5e-96
 Identities = 46/77 (59%), Positives = 62/77 (80%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            FDM+DLG+MR+FLGIEV+QN  GIF+CQ+RYA E+L RFGM+ S ++ +PIVPGTKL ++
Sbjct: 1055 FDMSDLGRMRYFLGIEVIQNPNGIFVCQRRYAHEVLVRFGMNNSNSVQNPIVPGTKLSKN 1114

Query: 51   ESGEPVDATQFKQIVGS 1
                 VDAT + ++VGS
Sbjct: 1115 NEETKVDATLYMKMVGS 1131


>emb|CAN65188.1| hypothetical protein VITISV_004365 [Vitis vinifera]
          Length = 1265

 Score =  177 bits (448), Expect(3) = 6e-96
 Identities = 86/118 (72%), Positives = 94/118 (79%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A + W IYQLDVKSAFLHGEL+E V+VEQP GYV+KG E KVY+L KALYGLKQAP AWY
Sbjct: 880  AQRKWTIYQLDVKSAFLHGELNEEVFVEQPCGYVQKGHEQKVYKLKKALYGLKQAPXAWY 939

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSM 242
            S IE YF+KEGF K  YEHTLF K  KEG +LI+SLYVDDLIFTGN   MF  FK SM
Sbjct: 940  SXIEAYFMKEGFEKCDYEHTLFIKTRKEGKVLIVSLYVDDLIFTGNDELMFTDFKRSM 997



 Score =  122 bits (306), Expect(3) = 6e-96
 Identities = 54/82 (65%), Positives = 69/82 (84%)
 Frame = -2

Query: 833  EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
            E+ +I +N TWELT+LP+  KKIGVKWI+KTK NE GE++KYKARLVAKGYTQ+ G+DY 
Sbjct: 801  ELAAINKNGTWELTELPEGGKKIGVKWIYKTKFNENGEVDKYKARLVAKGYTQQHGVDYT 860

Query: 653  EVFAPVARWDTIRCILAVACSK 588
            EVFAPVAR +TIR ++A+A  +
Sbjct: 861  EVFAPVARMETIRLVVALAAQR 882



 Score =  102 bits (255), Expect(3) = 6e-96
 Identities = 48/77 (62%), Positives = 62/77 (80%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            FDMTDLGKMR+FLG+EV+Q S GIFI Q++YA E+L+RFGM +S ++ +PIVPG KL + 
Sbjct: 1001 FDMTDLGKMRYFLGLEVLQRSDGIFISQKKYALEVLQRFGMDKSNSVHNPIVPGFKLMKD 1060

Query: 51   ESGEPVDATQFKQIVGS 1
            E G  VD T +KQ+VGS
Sbjct: 1061 EGGVKVDKTYYKQVVGS 1077


>gb|PNX85069.1| retrotransposon-related protein [Trifolium pratense]
          Length = 538

 Score =  175 bits (443), Expect(3) = 1e-95
 Identities = 85/119 (71%), Positives = 97/119 (81%)
 Frame = -3

Query: 595 ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
           A +GW IYQLDVKSAFLHGEL+E V+VEQP GY KK   +KVY+L KALYGLKQAPR+W+
Sbjct: 125 AQRGWIIYQLDVKSAFLHGELNEDVFVEQPRGYEKKDSPNKVYKLKKALYGLKQAPRSWF 184

Query: 415 SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMM 239
           S+IE YFVKEGF K   EHTLF K  KEG ILI+S+YVDDLIFTG+   MFE FK+SMM
Sbjct: 185 SRIEAYFVKEGFLKCHSEHTLFVKISKEGKILIVSIYVDDLIFTGDDESMFEDFKNSMM 243



 Score =  125 bits (313), Expect(3) = 1e-95
 Identities = 56/83 (67%), Positives = 71/83 (85%)
 Frame = -2

Query: 833 EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
           EI +IE+N TW LT LP++AKKIGVKW++KTK+NE GE++KYKARLVAKGY Q+ G+DY 
Sbjct: 46  EIKAIEKNETWVLTDLPEHAKKIGVKWVYKTKLNENGEVDKYKARLVAKGYAQQFGVDYT 105

Query: 653 EVFAPVARWDTIRCILAVACSKG 585
           EVFAPVAR DT+R I+A+A  +G
Sbjct: 106 EVFAPVARMDTVRMIVALAAQRG 128



 Score =  100 bits (250), Expect(3) = 1e-95
 Identities = 47/77 (61%), Positives = 62/77 (80%)
 Frame = -1

Query: 231 FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
           FDM+DLGKMR+FLGIEV+Q + GI+ICQ++YA E+L RFGM  S ++ +PIVPG K+ + 
Sbjct: 246 FDMSDLGKMRYFLGIEVLQRNDGIYICQKKYALEVLRRFGMEGSNSVHNPIVPGFKICKD 305

Query: 51  ESGEPVDATQFKQIVGS 1
           + G  VDAT FKQ+VGS
Sbjct: 306 KEGVKVDATFFKQVVGS 322


>gb|PNX99755.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 1209

 Score =  166 bits (421), Expect(3) = 5e-95
 Identities = 82/118 (69%), Positives = 96/118 (81%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A KGW + QLDVKSAFLHGEL E V+V+QP GY K  ++ KVY+L KALYGLKQAPRAWY
Sbjct: 892  ASKGWPVNQLDVKSAFLHGELVENVFVDQPPGYDK--QDGKVYKLKKALYGLKQAPRAWY 949

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSM 242
            SKIE YF +E F K  +EHTLF K D +GN+LI+S+YVDDLIFTG+SA MFE+FK SM
Sbjct: 950  SKIESYFTEENFEKCPHEHTLFMKYDGKGNVLIVSIYVDDLIFTGSSALMFEEFKHSM 1007



 Score =  139 bits (351), Expect(3) = 5e-95
 Identities = 64/89 (71%), Positives = 75/89 (84%)
 Frame = -2

Query: 851  EESYGNEIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQK 672
            +++   EI+SIE+NNTWEL  LPK  KKIGVKW++KTK NE GE+EK KARLVAKGYTQ+
Sbjct: 807  KQAMDQEIESIEKNNTWELVDLPKGVKKIGVKWVYKTKYNEHGEVEKLKARLVAKGYTQQ 866

Query: 671  QGIDYKEVFAPVARWDTIRCILAVACSKG 585
             G+D+ EVFAPVARWDTIR ILAVA SKG
Sbjct: 867  YGVDFNEVFAPVARWDTIRAILAVAASKG 895



 Score = 92.8 bits (229), Expect(3) = 5e-95
 Identities = 41/78 (52%), Positives = 58/78 (74%)
 Frame = -1

Query: 237  KAFDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLP 58
            + F MTDLG+MR FLG+EV+Q+  GIFI QQ+YA ++L RF M++  ++  PIVPG KL 
Sbjct: 1009 RKFSMTDLGRMRFFLGVEVMQSDHGIFIYQQKYAKDLLMRFNMAQCNSVNXPIVPGNKLT 1068

Query: 57   RSESGEPVDATQFKQIVG 4
            + + G  VDAT ++QI+G
Sbjct: 1069 KDQDGSIVDATNYRQIIG 1086


>emb|CAN81839.1| hypothetical protein VITISV_033739 [Vitis vinifera]
          Length = 1088

 Score =  181 bits (460), Expect(3) = 2e-94
 Identities = 87/119 (73%), Positives = 97/119 (81%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A K W IYQLDVKSAFLHGE+ E  +VEQP GY +KG+E KVYRL KALYGLKQAPRAWY
Sbjct: 676  AQKDWMIYQLDVKSAFLHGEIHEEXFVEQPPGYEQKGKESKVYRLKKALYGLKQAPRAWY 735

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMM 239
            S+IE YF+KEGFNK  YEHTLFTK  + G ILI+ LYVD+LIFTGN   MF+QFK SMM
Sbjct: 736  SRIESYFIKEGFNKCPYEHTLFTKTAEGGKILIVCLYVDELIFTGNDESMFKQFKKSMM 794



 Score =  124 bits (312), Expect(3) = 2e-94
 Identities = 57/82 (69%), Positives = 69/82 (84%)
 Frame = -2

Query: 833 EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
           EI++IERNNTWELT LP   K IGVKWIFKTK+NE GE++KYKARLVAKGY+Q+ G DY 
Sbjct: 597 EIEAIERNNTWELTDLPSGGKTIGVKWIFKTKLNENGEVDKYKARLVAKGYSQQYGXDYV 656

Query: 653 EVFAPVARWDTIRCILAVACSK 588
           EVFAPVAR +TIR ++++A  K
Sbjct: 657 EVFAPVARLETIRIVISLAAQK 678



 Score = 90.9 bits (224), Expect(3) = 2e-94
 Identities = 43/77 (55%), Positives = 58/77 (75%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            FDMTDL K+R+FLGIEV+Q + GIFI Q++YA E+LERF + +   + +P+VPG KL R 
Sbjct: 797  FDMTDLEKLRYFLGIEVMQKTDGIFINQRKYAQEVLERFNLYQCNPVHNPVVPGFKLTRD 856

Query: 51   ESGEPVDATQFKQIVGS 1
            + G  VD T +KQ+VGS
Sbjct: 857  KEGVEVDGTLYKQMVGS 873


>gb|PNX95204.1| copia-type polyprotein [Trifolium pratense]
          Length = 1328

 Score =  161 bits (407), Expect(3) = 3e-94
 Identities = 79/121 (65%), Positives = 98/121 (80%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A + W +YQLDVKSAFLHGELSE VYV+QPLGY +KG++ +VY+L KALYGL+QAPRAWY
Sbjct: 915  ASESWTVYQLDVKSAFLHGELSEDVYVDQPLGY-QKGKKSQVYKLKKALYGLRQAPRAWY 973

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMMK 236
            SKIE YF  E F K ++EHTLF K+ +E  ILI+SLYVDDLI+TGN  ++   FKSSM +
Sbjct: 974  SKIEAYFSNEKFEKCSHEHTLFVKQVEE-KILIVSLYVDDLIYTGNDDELIRDFKSSMKR 1032

Query: 235  S 233
            +
Sbjct: 1033 N 1033



 Score =  133 bits (334), Expect(3) = 3e-94
 Identities = 59/82 (71%), Positives = 75/82 (91%)
 Frame = -2

Query: 833  EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
            EI+ IE N+TWELT+LP  +KKIGVKWI+KTK+NE+G++EKYKARLVAKGY+Q+ GID+K
Sbjct: 836  EIECIESNDTWELTELPSGSKKIGVKWIYKTKLNEKGKVEKYKARLVAKGYSQQYGIDFK 895

Query: 653  EVFAPVARWDTIRCILAVACSK 588
            EVFAPVARWDTIR +L++A S+
Sbjct: 896  EVFAPVARWDTIRTVLSIAASE 917



 Score =  102 bits (253), Expect(3) = 3e-94
 Identities = 50/76 (65%), Positives = 60/76 (78%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            F MTDLGKM +FLG+EV QN RGIFI QQ+YA+EIL RF M     + SPIVPGTKL + 
Sbjct: 1034 FAMTDLGKMSYFLGVEVTQNDRGIFINQQKYAAEILNRFNMDSCNFVCSPIVPGTKLFKD 1093

Query: 51   ESGEPVDATQFKQIVG 4
            E+G+ VD+TQFKQ+VG
Sbjct: 1094 ENGKCVDSTQFKQMVG 1109


>gb|PNX94698.1| copia-type polyprotein [Trifolium pratense]
          Length = 1324

 Score =  166 bits (420), Expect(3) = 4e-94
 Identities = 83/121 (68%), Positives = 99/121 (81%)
 Frame = -3

Query: 595  ALKGWNIYQLDVKSAFLHGELSETVYVEQPLGYVKKGEEDKVYRLHKALYGLKQAPRAWY 416
            A KGW ++QLDVKSAFLHGEL+E VYVEQPLGY +  E+DKVY+L KALYGLKQAPRAWY
Sbjct: 913  ASKGWEVHQLDVKSAFLHGELTEDVYVEQPLGY-QTTEKDKVYKLQKALYGLKQAPRAWY 971

Query: 415  SKIEKYFVKEGFNKYAYEHTLFTKKDKEGNILIISLYVDDLIFTGNSADMFEQFKSSMMK 236
            SKIE YF +E F+K   EHTLF K+D +  ILI+SLYVDDLI+TGN   +FE+FK SM +
Sbjct: 972  SKIESYFCQEKFDKCQNEHTLFVKQDGD-KILIVSLYVDDLIYTGNDKMLFEEFKISMKR 1030

Query: 235  S 233
            +
Sbjct: 1031 N 1031



 Score =  136 bits (342), Expect(3) = 4e-94
 Identities = 63/85 (74%), Positives = 73/85 (85%)
 Frame = -2

Query: 833  EIDSIERNNTWELTKLPKNAKKIGVKWIFKTKINEQGEIEKYKARLVAKGYTQKQGIDYK 654
            EI+SIE N TW+LT LP+ AK IGVKWI+KTK NE+GE+EKYKARLVAKGY+Q+ GIDY 
Sbjct: 834  EIESIENNKTWKLTSLPQGAKTIGVKWIYKTKYNEKGEVEKYKARLVAKGYSQQYGIDYN 893

Query: 653  EVFAPVARWDTIRCILAVACSKGVE 579
            EVFAPVARWDTIR +L +A SKG E
Sbjct: 894  EVFAPVARWDTIRTLLCIAASKGWE 918



 Score = 93.6 bits (231), Expect(3) = 4e-94
 Identities = 45/77 (58%), Positives = 56/77 (72%)
 Frame = -1

Query: 231  FDMTDLGKMRHFLGIEVVQNSRGIFICQQRYASEILERFGMSRSKAMTSPIVPGTKLPRS 52
            F MTDLGKM++FLG+EV Q   GI I QQ+YA E+L RFGM     + SPIVPG KL + 
Sbjct: 1032 FAMTDLGKMKYFLGVEVSQKDYGILIHQQKYAKELLSRFGMESCNTVNSPIVPGNKLNKD 1091

Query: 51   ESGEPVDATQFKQIVGS 1
            E G  V+AT++KQ+VGS
Sbjct: 1092 EGGTVVNATKYKQMVGS 1108